AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30557

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30557.t1 MTR_4g064740 95.838 913 30 4 1 907 1 911 0.0 1699
MS.gene30557.t1 MTR_4g064740 94.304 913 30 4 1 907 1 897 0.0 1344
MS.gene30557.t1 MTR_4g064740 90.209 909 23 4 1 907 1 845 0.0 1244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30557.t1 AT2G29210 58.893 253 94 3 1 252 1 244 3.67e-84 289
MS.gene30557.t1 AT2G29210 58.893 253 94 3 1 252 1 244 4.75e-84 289

Find 241 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTCCTTCACTCGTTTC+TGG 0.046623 4.2:+40470155 None:intergenic
TTATGGTCTGTTGGCTTCTT+TGG 0.135375 4.2:+40470194 None:intergenic
TATGGTCTGTTGGCTTCTTT+GGG 0.166124 4.2:+40470195 None:intergenic
CTCATCCTCGTGATGAAATT+TGG 0.210053 4.2:+40469910 None:intergenic
GGATGTCATGGCTAGGTTTA+TGG 0.238409 4.2:+40470177 None:intergenic
ACTTTGAAGTCCAGGGATTC+AGG 0.246504 4.2:-40473096 MS.gene30557:CDS
ACTATCATACCTTCGCATTA+TGG 0.249458 4.2:+40471234 None:intergenic
GGGAAGAGAGACGGCGAAAA+AGG 0.256769 4.2:-40469276 MS.gene30557:CDS
AAGTCCTGTGCAGTCTTCTA+TGG 0.258541 4.2:-40471032 MS.gene30557:CDS
AGCTCAATCTCAAGCTTCTT+TGG 0.264195 4.2:+40469139 None:intergenic
TCATGAGAAGGAGACCTCTT+AGG 0.281842 4.2:+40471130 None:intergenic
GGAATTCGAAAATGATTTAC+TGG 0.282450 4.2:+40472105 None:intergenic
CTGCTCCTTCACTCGTTTCT+GGG 0.283018 4.2:+40470156 None:intergenic
CAGCATAGATCACCTGTTTC+GGG 0.285960 4.2:-40471178 MS.gene30557:CDS
GAAATTCAAATACAAATTAC+TGG 0.289351 4.2:-40473624 MS.gene30557:CDS
TGGTGTTCCTCAGCAGTTCT+TGG 0.291429 4.2:-40473526 MS.gene30557:CDS
CAGAAGAAGCATATTATTCT+AGG 0.297335 4.2:-40470136 MS.gene30557:intron
GAACCTATTCGCTTACTAAC+TGG 0.299039 4.2:+40469938 None:intergenic
CTTGAGTGCCTTCTGATTTG+TGG 0.303451 4.2:+40469539 None:intergenic
AGATGACTAGCTGCCCTTTC+AGG 0.304384 4.2:+40469881 None:intergenic
ACAGAAGTTTGCACCGGAAT+TGG 0.310132 4.2:-40474450 MS.gene30557:CDS
CTATCATACCTTCGCATTAT+GGG 0.312064 4.2:+40471235 None:intergenic
TAACTTCATACATGGTCTTC+TGG 0.314039 4.2:-40473987 MS.gene30557:CDS
AAGACTGCACAGGACTTCTT+TGG 0.314046 4.2:+40471038 None:intergenic
CATGCCCTTCTTTGCTTTGA+GGG 0.316228 4.2:+40469096 None:intergenic
AATACAAATTACTGGATTCA+TGG 0.319893 4.2:-40473616 MS.gene30557:CDS
AGGATAGGAGAAAGCATAAA+AGG 0.322404 4.2:-40469429 MS.gene30557:CDS
AGAGGCCAAGAGGAGGAAAA+AGG 0.328053 4.2:-40469341 MS.gene30557:CDS
TGAGATTGAGCTGCGTAATA+AGG 0.334168 4.2:-40469128 MS.gene30557:CDS
GGTGATCTGCGTCGTCGTAC+TGG 0.335851 4.2:+40471526 None:intergenic
GATCGGATTGGAGACTTATC+TGG 0.337789 4.2:+40470437 None:intergenic
AAGAAAGTGGCAAGCATAGA+AGG 0.346706 4.2:-40469459 MS.gene30557:CDS
TTTGGCAGTGATAAATCTTC+TGG 0.349282 4.2:-40469715 MS.gene30557:intron
GCAGCATAGATCACCTGTTT+CGG 0.356772 4.2:-40471179 MS.gene30557:CDS
TACTAGGAGATCTCTGTTGC+AGG 0.361598 4.2:+40471335 None:intergenic
AGAAAGGCCAGGATATAAAA+TGG 0.364329 4.2:-40469817 MS.gene30557:intron
TCATGCCCTTCTTTGCTTTG+AGG 0.366849 4.2:+40469095 None:intergenic
GATTTACTGGTTGCCCTTGC+AGG 0.368060 4.2:+40472118 None:intergenic
ACAGGACTTCTTTGGAGTCT+TGG 0.369222 4.2:+40471046 None:intergenic
CAAACCAGATGCTCCAATTC+CGG 0.371274 4.2:+40474437 None:intergenic
TGCACCGGAATTGGAGCATC+TGG 0.375069 4.2:-40474441 MS.gene30557:intron
TGGCTAGGTTTATGGTCTGT+TGG 0.380139 4.2:+40470185 None:intergenic
ATCAACCCTCTAGTCCTTTG+CGG 0.382879 4.2:-40470523 MS.gene30557:CDS
GAAAAGTGACCGAGCTTCTT+GGG 0.391597 4.2:-40474030 MS.gene30557:CDS
AAGCTCTTTCATGAACTTAC+CGG 0.392718 4.2:+40473584 None:intergenic
TTGTATCCTTTCAGAAGAAA+TGG 0.392995 4.2:+40471816 None:intergenic
GAGGGTGACCTTCGTCTAAT+AGG 0.395608 4.2:+40471361 None:intergenic
TAAGGAGAGTAAAGATATCA+TGG 0.397290 4.2:-40473321 MS.gene30557:CDS
GGTGATCTACGTCGTCGTAT+AGG 0.402707 4.2:+40471415 None:intergenic
CATGAGAAGGAGACCTCTTA+GGG 0.404136 4.2:+40471131 None:intergenic
GTGATCTGCGTCGTCGTACT+GGG 0.406823 4.2:+40471527 None:intergenic
ATGGAACGCCCTCGACCCTT+TGG 0.410183 4.2:+40471835 None:intergenic
AGAAAAGTGACCGAGCTTCT+TGG 0.412238 4.2:-40474031 MS.gene30557:CDS
GGTGATCTGCGTTGTCGTAC+TGG 0.413128 4.2:+40471496 None:intergenic
GAGGGCGATCTCCGTCTAAC+AGG 0.415650 4.2:+40471607 None:intergenic
AGATCTCTGTTGCAGGGGTG+AGG 0.421202 4.2:+40471342 None:intergenic
GGAAGAGAGGCTGAAGAAAC+TGG 0.422262 4.2:-40473300 MS.gene30557:intron
CTGCGTCTCCGTCCAGGATA+AGG 0.423188 4.2:+40471475 None:intergenic
GGGACTCAAGCTTCCTTCAA+TGG 0.423755 4.2:+40470217 None:intergenic
GACCTCCGTCCACGGCTTAG+TGG 0.424037 4.2:+40471277 None:intergenic
GGATTCAGGGCACTACATTC+AGG 0.425295 4.2:-40473082 MS.gene30557:CDS
GGTGTTCTGCGTCTTTGAAC+AGG 0.425400 4.2:+40471634 None:intergenic
CGAATTCCCGAAGTTATTCA+AGG 0.427764 4.2:-40472090 MS.gene30557:intron
GAAGGCACTCAAGATTTAGT+TGG 0.429516 4.2:-40469529 MS.gene30557:CDS
GTGGTGCTGATCACTACTTT+TGG 0.430067 4.2:+40469558 None:intergenic
GTAAGTTCATGAAAGAGCTT+TGG 0.430325 4.2:-40473581 MS.gene30557:CDS
AGAGAGAAATTGACCATTGA+AGG 0.434146 4.2:-40470230 MS.gene30557:CDS
GGTGACCTGCGCCGCATACT+AGG 0.436692 4.2:+40471319 None:intergenic
GGTGTTCTGCGTCGACGAAA+TGG 0.439002 4.2:+40471661 None:intergenic
CAGATCCAACTTTGAAGTCC+AGG 0.450428 4.2:-40473104 MS.gene30557:CDS
TTCTCTCTTGTTTGCCTCAG+AGG 0.451538 4.2:+40470245 None:intergenic
TCTCTCTTGTTTGCCTCAGA+GGG 0.451933 4.2:+40470246 None:intergenic
CTAGAGGGTTGATAAACTTC+CGG 0.454350 4.2:+40470533 None:intergenic
TCAAGCTTCTTTGGATCGTA+TGG 0.456459 4.2:+40469148 None:intergenic
CTTTGAAGTCCAGGGATTCA+GGG 0.458452 4.2:-40473095 MS.gene30557:CDS
GGTGATCTGCGTCGTCGTAC+TGG 0.460733 4.2:+40471556 None:intergenic
CTGCAAGTGCCTCCCCTAAG+AGG 0.462910 4.2:-40471144 MS.gene30557:CDS
AATGTAGTGCCCTGAATCCC+TGG 0.465080 4.2:+40473086 None:intergenic
GGCAAGGGAGGCGAGTCTCC+TGG 0.466974 4.2:-40469694 MS.gene30557:CDS
TGAGTCCCTCAAAGCAAAGA+AGG 0.472235 4.2:-40469101 MS.gene30557:CDS
GAATCCCTGGACTTCAAAGT+TGG 0.474942 4.2:+40473099 None:intergenic
AGCGGACCTTGAATAACTTC+GGG 0.477075 4.2:+40472084 None:intergenic
ATAGGAGGCCATCTTATTCA+AGG 0.477162 4.2:-40471735 MS.gene30557:CDS
TAATGATGCAGAAAGTGAAC+GGG 0.480070 4.2:-40473650 MS.gene30557:intron
GATCTTCTCCTTGAATAAGA+TGG 0.481430 4.2:+40471727 None:intergenic
ACATGGACGTAATGAGGCCT+TGG 0.485790 4.2:-40474060 MS.gene30557:CDS
CACTCGTTTCTGGGATGTCA+TGG 0.488472 4.2:+40470165 None:intergenic
GATTCTGTTTCTGAAGAAAG+TGG 0.489143 4.2:-40469472 MS.gene30557:CDS
CTCCTATGAGGAGATCTTTG+TGG 0.490568 4.2:+40471751 None:intergenic
AAGCGGACCTTGAATAACTT+CGG 0.491825 4.2:+40472083 None:intergenic
GGTGATCTTCGTCGTCGCAC+TGG 0.494165 4.2:+40471583 None:intergenic
GGCGTTCCATTTCTTCTGAA+AGG 0.495811 4.2:-40471822 MS.gene30557:CDS
TTGCTTGTGGTGATATTGAT+CGG 0.498595 4.2:+40470420 None:intergenic
AACCTATTCGCTTACTAACT+GGG 0.499232 4.2:+40469939 None:intergenic
GGAGGAGAAGCATCGAAAGC+GGG 0.501336 4.2:-40469296 MS.gene30557:CDS
GGAGATCTGCGTCTCCGTCC+AGG 0.505031 4.2:+40471469 None:intergenic
GGTCTCCTTCTCATGATGAA+TGG 0.507530 4.2:-40471123 MS.gene30557:CDS
TGAAAGGGCAGCTAGTCATC+TGG 0.509913 4.2:-40469879 MS.gene30557:CDS
CTTCGTCGTCGCACTGGAGA+GGG 0.511910 4.2:+40471589 None:intergenic
ATGGTTCTTCATCATCACTT+TGG 0.512444 4.2:+40469167 None:intergenic
GGTATTCGACGCATCGGTGA+AGG 0.512792 4.2:+40471298 None:intergenic
CTGCGTCTTCGCACAGGAGA+GGG 0.514178 4.2:+40471448 None:intergenic
TCATCGTCTGAAATATAGCC+TGG 0.514329 4.2:+40469214 None:intergenic
GGTGAAGTTCTCCTTCTGAC+TGG 0.515094 4.2:+40471067 None:intergenic
GTGTTATGGTGGTACCGATA+AGG 0.515482 4.2:+40472219 None:intergenic
CTGCGTCGTCGTACTGGGGA+AGG 0.515506 4.2:+40471532 None:intergenic
AGATCCAACTTTGAAGTCCA+GGG 0.516379 4.2:-40473103 MS.gene30557:CDS
GAATAAGATGGCCTCCTATG+AGG 0.522443 4.2:+40471739 None:intergenic
CTTTGTGGTGAACGTCTTCG+AGG 0.524203 4.2:+40471766 None:intergenic
TCTCGCCGTCACAACATGTC+AGG 0.524525 4.2:-40474857 None:intergenic
GATCTATGCTGCAAAGGAGA+TGG 0.525694 4.2:+40471190 None:intergenic
ATGGTGTTAGAGCAAGGAAC+AGG 0.526411 4.2:-40473038 MS.gene30557:intron
TGCCTCAGAGGGATTTCATG+TGG 0.527285 4.2:+40470257 None:intergenic
GGTGATCTACGTCGGTGCAC+AGG 0.528164 4.2:+40471388 None:intergenic
AATAATGAAAGGAATAAGAA+AGG 0.530279 4.2:-40469833 MS.gene30557:CDS
TGGTCTGTTGGCTTCTTTGG+GGG 0.531174 4.2:+40470197 None:intergenic
CAACGCAGATCACCTTATCC+TGG 0.531639 4.2:-40471487 MS.gene30557:CDS
AATTCAGAGGAAGAAAGATA+AGG 0.532772 4.2:-40473339 MS.gene30557:CDS
TATCATACCTTCGCATTATG+GGG 0.534876 4.2:+40471236 None:intergenic
GAAGAAGAAGCTGCGAAAGG+AGG 0.535503 4.2:-40469314 MS.gene30557:CDS
GATCTCTGTTGCAGGGGTGA+GGG 0.537291 4.2:+40471343 None:intergenic
CACCACAAAGATCTCCTCAT+AGG 0.537344 4.2:-40471753 MS.gene30557:CDS
TGCAGATCTCCAAAGGGTCG+AGG 0.538902 4.2:-40471844 MS.gene30557:intron
GTCTTCAAACCCAAGAAGCT+CGG 0.539593 4.2:+40474021 None:intergenic
TGTGGTGATATTGATCGGAT+TGG 0.543477 4.2:+40470425 None:intergenic
GATCTCCTAGTATGCGGCGC+AGG 0.544212 4.2:-40471324 MS.gene30557:CDS
TCCCCAGTTAGTAAGCGAAT+AGG 0.546444 4.2:-40469941 MS.gene30557:CDS
TTGACAGAGGCTCACCTGCA+AGG 0.546463 4.2:-40472132 MS.gene30557:intron
TTGAAAACTGCAGGTGAATG+TGG 0.546556 4.2:+40472246 None:intergenic
GTTTCTGGGATGTCATGGCT+AGG 0.546768 4.2:+40470170 None:intergenic
ACTGGTGACTTCTGTTGACC+AGG 0.547027 4.2:+40469676 None:intergenic
TGACAGAGGCTCACCTGCAA+GGG 0.547216 4.2:-40472131 MS.gene30557:intron
CTGCGTCTTTGAACAGGAGA+GGG 0.548291 4.2:+40471640 None:intergenic
TAAGGTGAATTGAAAACTGC+AGG 0.548365 4.2:+40472237 None:intergenic
AGTCCTGTGCAGTCTTCTAT+GGG 0.549704 4.2:-40471031 MS.gene30557:CDS
ATCGAAAGCGGGAAGAGAGA+CGG 0.550323 4.2:-40469285 MS.gene30557:CDS
ATGGTCTGTTGGCTTCTTTG+GGG 0.552334 4.2:+40470196 None:intergenic
GTTCTCCTTCTGACTGGAGA+TGG 0.552568 4.2:+40471073 None:intergenic
GGTGATCTGCGTCTTCGCAC+AGG 0.555011 4.2:+40471442 None:intergenic
AGTCTTCTATGGGAAGAGTC+AGG 0.555275 4.2:-40471021 MS.gene30557:intron
ATAGAAGGGATGGAAAGGAT+AGG 0.555910 4.2:-40469444 MS.gene30557:CDS
CTGCGTCGTCGTACTGGAGA+GGG 0.556617 4.2:+40471562 None:intergenic
CTGAAAATGAAGAGTAAACC+AGG 0.557310 4.2:-40469232 MS.gene30557:CDS
CAGTGATAAATCTTCTGGCA+AGG 0.559732 4.2:-40469710 MS.gene30557:CDS
CTACGTCGGTGCACAGGAGA+AGG 0.560039 4.2:+40471394 None:intergenic
ATAGTAGAACTCCACGGCGC+AGG 0.561138 4.2:-40471216 MS.gene30557:CDS
CTGCGTTGTCGTACTGGAGA+AGG 0.562594 4.2:+40471502 None:intergenic
GAATGCATTCCACGTCGGAT+AGG 0.562702 4.2:+40471685 None:intergenic
GAGTATATGCAGATCTCCAA+AGG 0.566273 4.2:-40471851 MS.gene30557:intron
AGGAGGAGAAGCATCGAAAG+CGG 0.568565 4.2:-40469297 MS.gene30557:CDS
AGGTGAACATGGACGTAATG+AGG 0.572338 4.2:-40474066 MS.gene30557:CDS
ACTAGGAGATCTCTGTTGCA+GGG 0.573359 4.2:+40471336 None:intergenic
GTAATGATGCAGAAAGTGAA+CGG 0.574593 4.2:-40473651 MS.gene30557:intron
GGACATGACAAAGGTGAACA+TGG 0.574597 4.2:-40474077 MS.gene30557:CDS
TGAAAGGAATAAGAAAGGCC+AGG 0.574897 4.2:-40469828 MS.gene30557:CDS
CGTCGTCGTACTGGGGAAGG+TGG 0.575213 4.2:+40471535 None:intergenic
CTGGTCTTACTTCTTGCTTG+TGG 0.575834 4.2:+40470407 None:intergenic
CGATGAGGAAGCTGAACGAA+GGG 0.577929 4.2:-40469197 MS.gene30557:CDS
AGGATGGAAAACAAACTGAC+AGG 0.578708 4.2:-40473062 MS.gene30557:CDS
GTGCTTATTAACTTCATACA+TGG 0.580754 4.2:-40473995 MS.gene30557:CDS
GACCTTCGTCTAATAGGTGA+TGG 0.581463 4.2:+40471367 None:intergenic
AGTGGCAAGCATAGAAGGGA+TGG 0.582926 4.2:-40469454 MS.gene30557:CDS
TGGATTAGGCTGAAAGCGAT+AGG 0.583442 4.2:-40473373 MS.gene30557:intron
TCTTCGTCGTCGCACTGGAG+AGG 0.583498 4.2:+40471588 None:intergenic
ATGATTCTGAGTTAGAAGAC+AGG 0.586623 4.2:-40469366 MS.gene30557:CDS
GTAAAGATATCATGGAAGAG+AGG 0.588000 4.2:-40473313 MS.gene30557:CDS
ACAGAAGTCACCAGTGAACA+AGG 0.589806 4.2:-40469668 MS.gene30557:CDS
ACATGGTCTTCTGGAAGCGA+AGG 0.592482 4.2:-40473978 MS.gene30557:intron
AGCATTATGATAATAATGAA+AGG 0.592936 4.2:-40469844 MS.gene30557:CDS
GGAGATGGAGATACACGTGC+AGG 0.593789 4.2:+40471088 None:intergenic
CTACGTCGTCGTATAGGAGA+AGG 0.596511 4.2:+40471421 None:intergenic
GCAGATCTCCAAAGGGTCGA+GGG 0.599101 4.2:-40471843 MS.gene30557:intron
CACAAAGATCTCCTCATAGG+AGG 0.599164 4.2:-40471750 MS.gene30557:CDS
TCTGCGTCTTTGAACAGGAG+AGG 0.599370 4.2:+40471639 None:intergenic
TGAGTTAGAAGACAGGAAAG+AGG 0.599489 4.2:-40469359 MS.gene30557:CDS
TACAGACCGCAAAGGACTAG+AGG 0.599929 4.2:+40470517 None:intergenic
AGTGATAAATCTTCTGGCAA+GGG 0.600108 4.2:-40469709 MS.gene30557:CDS
GAGGAAGCTGAACGAAGGGA+TGG 0.600904 4.2:-40469193 MS.gene30557:CDS
GAACACCCTCTCCTGTTAGA+CGG 0.602336 4.2:-40471618 MS.gene30557:CDS
TAAGTCACAGAAGTTTGCAC+CGG 0.605355 4.2:-40474456 MS.gene30557:CDS
GAGAGCTTGACCTCCGTCCA+CGG 0.605834 4.2:+40471269 None:intergenic
GGAGAAGAAGAAGCTGCGAA+AGG 0.606850 4.2:-40469317 MS.gene30557:CDS
CAAGCATAGAAGGGATGGAA+AGG 0.610084 4.2:-40469449 MS.gene30557:CDS
ACAGGTGATCTATGCTGCAA+AGG 0.611103 4.2:+40471184 None:intergenic
CTAGGAGATCTCTGTTGCAG+GGG 0.611845 4.2:+40471337 None:intergenic
ACGATGAGGAAGCTGAACGA+AGG 0.612999 4.2:-40469198 MS.gene30557:CDS
ATCTGCCAAATTTCATCACG+AGG 0.613155 4.2:-40469915 MS.gene30557:CDS
GAACTCCATTCATCATGAGA+AGG 0.615832 4.2:+40471118 None:intergenic
AGTATATGCAGATCTCCAAA+GGG 0.617919 4.2:-40471850 MS.gene30557:intron
GAGTCCCTCAAAGCAAAGAA+GGG 0.618920 4.2:-40469100 MS.gene30557:CDS
ATCATACCTTCGCATTATGG+GGG 0.620361 4.2:+40471237 None:intergenic
TATCTCCATCTCCAGTCAGA+AGG 0.621299 4.2:-40471078 MS.gene30557:CDS
GATAAATCTTCTGGCAAGGG+AGG 0.621601 4.2:-40469706 MS.gene30557:CDS
GGATAACAAGTGAAATTCAG+AGG 0.624286 4.2:-40473352 MS.gene30557:CDS
CGATCTCCGTCTAACAGGAG+AGG 0.624447 4.2:+40471612 None:intergenic
GGAAAACAAACTGACAGGAA+TGG 0.624597 4.2:-40473057 MS.gene30557:CDS
TCTGCGTCGTCGTACTGGAG+AGG 0.626382 4.2:+40471561 None:intergenic
TCAGGGCACTACATTCAGGA+TGG 0.627377 4.2:-40473078 MS.gene30557:CDS
TTAGCATCCAAGAACTGCTG+AGG 0.629191 4.2:+40473519 None:intergenic
GGACGGAGGATTAGATGCGA+AGG 0.629390 4.2:-40473142 MS.gene30557:CDS
AGAAAGTGGCAAGCATAGAA+GGG 0.631893 4.2:-40469458 MS.gene30557:CDS
GAACTGCTGAGGAACACCAC+TGG 0.634456 4.2:+40473530 None:intergenic
ACAGGAATGGTGTTAGAGCA+AGG 0.635476 4.2:-40473044 MS.gene30557:CDS
CGCCGTCACAACATGTCAGG+CGG 0.637769 4.2:-40474854 None:intergenic
ACAGGAAAGAGGCCAAGAGG+AGG 0.638857 4.2:-40469348 MS.gene30557:CDS
AAGACAGGAAAGAGGCCAAG+AGG 0.640404 4.2:-40469351 MS.gene30557:CDS
GATCAGCACCACAAATCAGA+AGG 0.640722 4.2:-40469547 MS.gene30557:CDS
GATCTCCGTCTAACAGGAGA+GGG 0.642163 4.2:+40471613 None:intergenic
CATCTGCGGATCAAGACACT+CGG 0.642784 4.2:-40474505 MS.gene30557:CDS
TCTGCGTCTTCGCACAGGAG+AGG 0.644756 4.2:+40471447 None:intergenic
GATTGGAGACTTATCTGGTG+TGG 0.644922 4.2:+40470442 None:intergenic
GAATACCACTAAGCCGTGGA+CGG 0.647906 4.2:-40471282 MS.gene30557:CDS
CGTTGTCGTACTGGAGAAGG+TGG 0.649650 4.2:+40471505 None:intergenic
AGGCTATATTTCAGACGATG+AGG 0.652893 4.2:-40469212 MS.gene30557:CDS
TACCACTAAGCCGTGGACGG+AGG 0.653994 4.2:-40471279 MS.gene30557:CDS
GACATCCCAGAAACGAGTGA+AGG 0.656511 4.2:-40470161 MS.gene30557:CDS
TGATCTGCGTCGTCGTACTG+GGG 0.659410 4.2:+40471528 None:intergenic
CTTAGTGGTATTCGACGCAT+CGG 0.660302 4.2:+40471292 None:intergenic
GCAGATCACCTTATCCTGGA+CGG 0.662868 4.2:-40471483 MS.gene30557:CDS
CTTCCCATAGAAGACTGCAC+AGG 0.663283 4.2:+40471028 None:intergenic
AACAGAGATCTCCTAGTATG+CGG 0.664203 4.2:-40471330 MS.gene30557:CDS
GGATACAACGGTCTTCACGA+CGG 0.664510 4.2:-40471801 MS.gene30557:CDS
ACCTATTCGCTTACTAACTG+GGG 0.667629 4.2:+40469940 None:intergenic
AGAAGGAGACCTCTTAGGGG+AGG 0.669972 4.2:+40471135 None:intergenic
ACAGACCGCAAAGGACTAGA+GGG 0.670912 4.2:+40470518 None:intergenic
ATGGAGAATGCATTCCACGT+CGG 0.671570 4.2:+40471680 None:intergenic
GGAGATGGAGACCTGCGCCG+TGG 0.671901 4.2:+40471205 None:intergenic
CACCATCACCTATTAGACGA+AGG 0.685718 4.2:-40471369 MS.gene30557:CDS
TCTGCAGCATAAGAATCGCG+AGG 0.686337 4.2:+40469625 None:intergenic
TAGGTGATGGTGATCTACGT+CGG 0.690454 4.2:+40471380 None:intergenic
GATGCAGAAAGTGAACGGGA+AGG 0.691146 4.2:-40473646 MS.gene30557:intron
TTTCTTCTGAAAGGATACAA+CGG 0.693142 4.2:-40471813 MS.gene30557:CDS
CGTCGAATACCACTAAGCCG+TGG 0.697725 4.2:-40471286 MS.gene30557:CDS
TTGGATGTAGGGTACATCTG+CGG 0.702200 4.2:-40474519 MS.gene30557:intron
ATGAGAAGGAGACCTCTTAG+GGG 0.707295 4.2:+40471132 None:intergenic
TTTGTAGGTGGACATGACAA+AGG 0.709049 4.2:-40474086 MS.gene30557:intron
CTCAAACTACTGTAGGACGG+AGG 0.719978 4.2:-40473156 MS.gene30557:intron
TCATCTTCTCCTATCCGACG+TGG 0.725643 4.2:-40471694 MS.gene30557:CDS
TCTCTCTGTACAGACCGCAA+AGG 0.728007 4.2:+40470509 None:intergenic
GTCCACATGAAATCCCTCTG+AGG 0.742228 4.2:-40470259 MS.gene30557:CDS
GGTATGATAGTAGAACTCCA+CGG 0.784949 4.2:-40471222 MS.gene30557:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTACTCATTAATAA+AGG + chr4.2:40472011-40472030 None:intergenic 10.0%
!! ATATACAAAAATTTAAAAAC+AGG + chr4.2:40469333-40469352 None:intergenic 10.0%
!! ATATAAAATGGTAATATGAT+TGG - chr4.2:40474124-40474143 MS.gene30557:intron 15.0%
!! TACAAAATATCAAAAAACAA+TGG + chr4.2:40471463-40471482 None:intergenic 15.0%
!!! AAATATAACATGTTGAATTT+TGG - chr4.2:40469391-40469410 MS.gene30557:CDS 15.0%
!!! AACAAACCTTATTTAAAAAA+TGG + chr4.2:40473312-40473331 None:intergenic 15.0%
!!! ACAAACCTTATTTAAAAAAT+GGG + chr4.2:40473311-40473330 None:intergenic 15.0%
!!! ATTTTATTCAATTTTGAAGT+AGG - chr4.2:40473043-40473062 MS.gene30557:CDS 15.0%
!!! CTTAGTTGATTTTTTTTATA+GGG - chr4.2:40469537-40469556 MS.gene30557:CDS 15.0%
!!! TAGTTTATGCATATTTATTT+TGG - chr4.2:40473631-40473650 MS.gene30557:CDS 15.0%
!!! TTATTGTTTTTGAACTATTT+TGG - chr4.2:40469978-40469997 MS.gene30557:CDS 15.0%
!!! TTGCACATTTAATTTTTATT+TGG - chr4.2:40472029-40472048 MS.gene30557:intron 15.0%
!! AAGCAAATGAATAATTGAAA+TGG + chr4.2:40469139-40469158 None:intergenic 20.0%
!! AATAACCAGAATTACTATTA+TGG - chr4.2:40473076-40473095 MS.gene30557:CDS 20.0%
!! AATAATGAAAGGAATAAGAA+AGG - chr4.2:40474096-40474115 MS.gene30557:intron 20.0%
!! AATGAAATAGAAACAAACAT+CGG + chr4.2:40470955-40470974 None:intergenic 20.0%
!! AGCATTATGATAATAATGAA+AGG - chr4.2:40474085-40474104 MS.gene30557:intron 20.0%
!! ATGATTAAAAAAGAAGGAAT+CGG + chr4.2:40470926-40470945 None:intergenic 20.0%
!! CACATAATGATTAAAAAAGA+AGG + chr4.2:40470932-40470951 None:intergenic 20.0%
!! GAAATTCAAATACAAATTAC+TGG - chr4.2:40470305-40470324 MS.gene30557:intron 20.0%
!! GTAAAAAACTTTATTCAGAA+AGG + chr4.2:40470530-40470549 None:intergenic 20.0%
!! TAAGCTAAATTAATCAATCA+AGG + chr4.2:40469521-40469540 None:intergenic 20.0%
!! TATGCATACATAATATATAC+AGG - chr4.2:40471128-40471147 MS.gene30557:CDS 20.0%
!!! AAACTCTATTATTTTGTTGT+TGG - chr4.2:40471539-40471558 MS.gene30557:CDS 20.0%
!!! AACTCTATTATTTTGTTGTT+GGG - chr4.2:40471540-40471559 MS.gene30557:CDS 20.0%
!!! AACTTGTTATAGTGATTTTT+TGG - chr4.2:40469307-40469326 MS.gene30557:CDS 20.0%
!!! AAGTTTGTTTGATTTTTCTT+TGG - chr4.2:40472960-40472979 MS.gene30557:intron 20.0%
!!! CAAATGTAGAAACTTATTTT+TGG - chr4.2:40473194-40473213 MS.gene30557:intron 20.0%
!!! GCTTAGTTGATTTTTTTTAT+AGG - chr4.2:40469536-40469555 MS.gene30557:CDS 20.0%
!!! GTTTCTATTTCATTTTCTTA+TGG - chr4.2:40470961-40470980 MS.gene30557:intron 20.0%
!!! TCTACAAAATTTGTTTTTGT+TGG + chr4.2:40471268-40471287 None:intergenic 20.0%
!!! TTAGTTATGCATATTTTTGT+GGG + chr4.2:40471198-40471217 None:intergenic 20.0%
!!! TTTGAACTATTTTGGTTATA+CGG - chr4.2:40469986-40470005 MS.gene30557:CDS 20.0%
!!! TTTGCAGACTAATTTTTTAA+GGG - chr4.2:40473132-40473151 MS.gene30557:CDS 20.0%
!!! TTTTCTGATGAATTTGATTT+AGG + chr4.2:40473955-40473974 None:intergenic 20.0%
!!! TTTTGCAGACTAATTTTTTA+AGG - chr4.2:40473131-40473150 MS.gene30557:CDS 20.0%
! AAAATTGAAAAACTGAACAG+AGG + chr4.2:40471509-40471528 None:intergenic 25.0%
! AACAAAAAAAACTGATGACA+AGG - chr4.2:40474327-40474346 MS.gene30557:intron 25.0%
! AAGAAAATTTGTGAAATCTG+TGG - chr4.2:40473337-40473356 MS.gene30557:CDS 25.0%
! AATACAAATTACTGGATTCA+TGG - chr4.2:40470313-40470332 MS.gene30557:intron 25.0%
! AATTGAAATGGTGAATTCAA+CGG + chr4.2:40469127-40469146 None:intergenic 25.0%
! ACTCATTAATAAAGGCTAAA+AGG + chr4.2:40472003-40472022 None:intergenic 25.0%
! ATCTATGATAGTTCATTTAG+AGG + chr4.2:40470200-40470219 None:intergenic 25.0%
! ATTCAAGAACTCATTTAACA+GGG + chr4.2:40471617-40471636 None:intergenic 25.0%
! CAAGGTAAAAAATAAAAGCA+TGG + chr4.2:40470245-40470264 None:intergenic 25.0%
! CTCATTAATAAAGGCTAAAA+GGG + chr4.2:40472002-40472021 None:intergenic 25.0%
! TAATAGTTAATGCAAAGCAT+TGG - chr4.2:40471386-40471405 MS.gene30557:CDS 25.0%
! TACTGTATGCTATGAAATTA+GGG - chr4.2:40469229-40469248 MS.gene30557:CDS 25.0%
! TAGAACCATAATAGTAATTC+TGG + chr4.2:40473084-40473103 None:intergenic 25.0%
! TCATTAATAAAGGCTAAAAG+GGG + chr4.2:40472001-40472020 None:intergenic 25.0%
! TTAAAAAATGGGTCATGTTA+AGG + chr4.2:40473300-40473319 None:intergenic 25.0%
! TTACATCAAAAAAATAGCAG+AGG + chr4.2:40469805-40469824 None:intergenic 25.0%
! TTGAATGTAATCACATTTGT+CGG + chr4.2:40469603-40469622 None:intergenic 25.0%
! TTGTATGTTGTATTAGATGT+TGG - chr4.2:40471478-40471497 MS.gene30557:CDS 25.0%
! TTTCAATCCAATATACAAGA+TGG + chr4.2:40471751-40471770 None:intergenic 25.0%
!! AAAAAAAGTGCAAGGATAAA+AGG + chr4.2:40470504-40470523 None:intergenic 25.0%
!! AATAGTTAATGCAAAGCATT+GGG - chr4.2:40471387-40471406 MS.gene30557:CDS 25.0%
!! ACATTTTCCATCTTGTATAT+TGG - chr4.2:40471741-40471760 MS.gene30557:CDS 25.0%
!! CATATTACCATTTTATATCC+TGG + chr4.2:40474122-40474141 None:intergenic 25.0%
!! CGTATTTGTTGAAATCAATA+TGG - chr4.2:40470116-40470135 MS.gene30557:intron 25.0%
!! TTAAAAGAACCTTCTTTTTC+AGG + chr4.2:40470448-40470467 None:intergenic 25.0%
!!! ATAAAGTTTTTTACTGTCGA+TGG - chr4.2:40470536-40470555 MS.gene30557:CDS 25.0%
!!! ATTAGCTTTTACTCTCTTAT+AGG - chr4.2:40471648-40471667 MS.gene30557:CDS 25.0%
!!! ATTTTTTACCTTGCAACATT+CGG - chr4.2:40470252-40470271 MS.gene30557:CDS 25.0%
!!! CATGACCCATTTTTTAAATA+AGG - chr4.2:40473303-40473322 MS.gene30557:CDS 25.0%
!!! CCATTTTTCCTAATTATTAC+CGG - chr4.2:40469628-40469647 MS.gene30557:CDS 25.0%
!!! CTTAGTTATGCATATTTTTG+TGG + chr4.2:40471199-40471218 None:intergenic 25.0%
!!! TTTATCCTTGCACTTTTTTT+TGG - chr4.2:40470504-40470523 MS.gene30557:CDS 25.0%
AAAAATAAAGATCCGTTAGC+AGG + chr4.2:40471970-40471989 None:intergenic 30.0%
AAAATTTCACAGCTCCAAAA+AGG + chr4.2:40473115-40473134 None:intergenic 30.0%
AATTCAGAGGAAGAAAGATA+AGG - chr4.2:40470590-40470609 MS.gene30557:intron 30.0%
AGTAAGCATATATGCAAAAG+CGG + chr4.2:40471866-40471885 None:intergenic 30.0%
AGTCTTGATTTACCATTCAT+TGG - chr4.2:40470467-40470486 MS.gene30557:CDS 30.0%
ATCCAATTCTATAGTTGTCA+AGG + chr4.2:40471362-40471381 None:intergenic 30.0%
ATTAATAAAGGCTAAAAGGG+GGG + chr4.2:40471999-40472018 None:intergenic 30.0%
ATTCAGTAGCATAATCTGAT+GGG - chr4.2:40471925-40471944 MS.gene30557:intron 30.0%
CATTAATAAAGGCTAAAAGG+GGG + chr4.2:40472000-40472019 None:intergenic 30.0%
CCGGTAATAATTAGGAAAAA+TGG + chr4.2:40469631-40469650 None:intergenic 30.0%
GATTCAAGAACTCATTTAAC+AGG + chr4.2:40471618-40471637 None:intergenic 30.0%
GGAATTCGAAAATGATTTAC+TGG + chr4.2:40471827-40471846 None:intergenic 30.0%
GTACTGTATGCTATGAAATT+AGG - chr4.2:40469228-40469247 MS.gene30557:CDS 30.0%
GTCTTGATTTACCATTCATT+GGG - chr4.2:40470468-40470487 MS.gene30557:CDS 30.0%
GTGCTTATTAACTTCATACA+TGG - chr4.2:40469934-40469953 MS.gene30557:CDS 30.0%
TAAGGAGAGTAAAGATATCA+TGG - chr4.2:40470608-40470627 MS.gene30557:intron 30.0%
TAATACTATTTGTTCGTTGC+TGG - chr4.2:40470652-40470671 MS.gene30557:intron 30.0%
TATGCTTACTTAGTTTCGTT+TGG - chr4.2:40471876-40471895 MS.gene30557:intron 30.0%
TCTGTACAGAGAGATAAAAA+TGG - chr4.2:40473429-40473448 MS.gene30557:intron 30.0%
TTCATAACACAGTAGTTTGA+GGG + chr4.2:40471164-40471183 None:intergenic 30.0%
TTCCAAATTTCAAAAGCAGT+TGG + chr4.2:40469718-40469737 None:intergenic 30.0%
TTCCTTGACAACTATAGAAT+TGG - chr4.2:40471357-40471376 MS.gene30557:CDS 30.0%
TTCTAGGTTTGAATACGAAT+TGG - chr4.2:40473809-40473828 MS.gene30557:intron 30.0%
TTGTATCCTTTCAGAAGAAA+TGG + chr4.2:40472116-40472135 None:intergenic 30.0%
! ACATGTTGAATTTTGGATGT+AGG - chr4.2:40469398-40469417 MS.gene30557:CDS 30.0%
! ACTCATTTAACAGGGTTTTT+AGG + chr4.2:40471609-40471628 None:intergenic 30.0%
! ATGTTTTCAGCTTCTTAAAG+TGG - chr4.2:40471022-40471041 MS.gene30557:CDS 30.0%
! ATTTTCTTATGGTTTCACAG+TGG - chr4.2:40470972-40470991 MS.gene30557:intron 30.0%
! CAGAAGAAGCATATTATTCT+AGG - chr4.2:40473793-40473812 MS.gene30557:intron 30.0%
! CAGTTTTCAATTCACCTTAT+CGG - chr4.2:40471696-40471715 MS.gene30557:CDS 30.0%
! CATGTTGAATTTTGGATGTA+GGG - chr4.2:40469399-40469418 MS.gene30557:CDS 30.0%
! CTTGAAAAATGATTTGTAGG+TGG - chr4.2:40469831-40469850 MS.gene30557:CDS 30.0%
! GTGCTTGAAAAATGATTTGT+AGG - chr4.2:40469828-40469847 MS.gene30557:CDS 30.0%
! TGATTTTATAAAGCGAGACA+TGG - chr4.2:40471059-40471078 MS.gene30557:CDS 30.0%
! TTGCTGGATTACGTTTTATA+GGG - chr4.2:40470668-40470687 MS.gene30557:intron 30.0%
! TTTCTTCTGAAAGGATACAA+CGG - chr4.2:40472116-40472135 MS.gene30557:CDS 30.0%
! TTTTCTTATGGTTTCACAGT+GGG - chr4.2:40470973-40470992 MS.gene30557:intron 30.0%
!! AAATGTGCTAAGAAGTGTTA+TGG + chr4.2:40471727-40471746 None:intergenic 30.0%
!! GTCATTTTGAACTAATGTCA+AGG - chr4.2:40472056-40472075 MS.gene30557:intron 30.0%
!! TTTTGGTTATACGGTAATCT+TGG - chr4.2:40469995-40470014 MS.gene30557:intron 30.0%
!!! GTATTTTGATACCCAATGAA+TGG + chr4.2:40470482-40470501 None:intergenic 30.0%
!!! TTACCTTCTATTTTTACAGC+TGG + chr4.2:40473544-40473563 None:intergenic 30.0%
!!! TTCCAACTGCTTTTGAAATT+TGG - chr4.2:40469713-40469732 MS.gene30557:intron 30.0%
!!! TTTTTTACTGTCGATGGATT+AGG - chr4.2:40470542-40470561 MS.gene30557:CDS 30.0%
AACCTATTCGCTTACTAACT+GGG + chr4.2:40473993-40474012 None:intergenic 35.0%
AAGAGTTGTATGAGAAGTCA+AGG + chr4.2:40473571-40473590 None:intergenic 35.0%
AAGCTCTTTCATGAACTTAC+CGG + chr4.2:40470348-40470367 None:intergenic 35.0%
ACACTGTACATCTCTGATAA+TGG - chr4.2:40474183-40474202 MS.gene30557:intron 35.0%
ACGGTAATCTTGGAGATTAA+TGG - chr4.2:40470005-40470024 MS.gene30557:intron 35.0%
ACTATCATACCTTCGCATTA+TGG + chr4.2:40472698-40472717 None:intergenic 35.0%
ACTTCTAAACTTGTGCCTTA+AGG + chr4.2:40473174-40473193 None:intergenic 35.0%
AGAAAGGCCAGGATATAAAA+TGG - chr4.2:40474112-40474131 MS.gene30557:intron 35.0%
AGAAGAACTCCTGAAAAAGA+AGG - chr4.2:40470436-40470455 MS.gene30557:CDS 35.0%
AGAAGATTTATCACTGCCAA+AGG + chr4.2:40474215-40474234 None:intergenic 35.0%
AGACCAGCTGTAAAAATAGA+AGG - chr4.2:40473538-40473557 MS.gene30557:CDS 35.0%
AGAGAGAAATTGACCATTGA+AGG - chr4.2:40473699-40473718 MS.gene30557:intron 35.0%
AGTATATGCAGATCTCCAAA+GGG - chr4.2:40472079-40472098 MS.gene30557:intron 35.0%
AGTGATAAATCTTCTGGCAA+GGG - chr4.2:40474220-40474239 MS.gene30557:intron 35.0%
ATGATTCTGAGTTAGAAGAC+AGG - chr4.2:40474563-40474582 MS.gene30557:intron 35.0%
ATGCATAAACTAACTACTGC+AGG + chr4.2:40473623-40473642 None:intergenic 35.0%
ATGGTTCTTCATCATCACTT+TGG + chr4.2:40474765-40474784 None:intergenic 35.0%
ATTACAAACCGAATGTTGCA+AGG + chr4.2:40470263-40470282 None:intergenic 35.0%
CATATACACCATGATGTTTG+AGG + chr4.2:40469741-40469760 None:intergenic 35.0%
CATTCAGTAGCATAATCTGA+TGG - chr4.2:40471924-40471943 MS.gene30557:intron 35.0%
CTATCATACCTTCGCATTAT+GGG + chr4.2:40472697-40472716 None:intergenic 35.0%
CTGAAAATGAAGAGTAAACC+AGG - chr4.2:40474697-40474716 MS.gene30557:intron 35.0%
CTTCATAACACAGTAGTTTG+AGG + chr4.2:40471165-40471184 None:intergenic 35.0%
CTTCTAAACTTGTGCCTTAA+GGG + chr4.2:40473173-40473192 None:intergenic 35.0%
GAAAAAAACTCCTTGTTCAC+TGG + chr4.2:40474274-40474293 None:intergenic 35.0%
GATAAAAATGGCAAAGCTTC+AGG - chr4.2:40473441-40473460 MS.gene30557:intron 35.0%
GATCTTCTCCTTGAATAAGA+TGG + chr4.2:40472205-40472224 None:intergenic 35.0%
GGATAACAAGTGAAATTCAG+AGG - chr4.2:40470577-40470596 MS.gene30557:intron 35.0%
GGATTCATGGAAAAAAACAC+CGG - chr4.2:40470326-40470345 MS.gene30557:intron 35.0%
GTAAAGATATCATGGAAGAG+AGG - chr4.2:40470616-40470635 MS.gene30557:intron 35.0%
GTAAGTTCATGAAAGAGCTT+TGG - chr4.2:40470348-40470367 MS.gene30557:intron 35.0%
GTAATGATGCAGAAAGTGAA+CGG - chr4.2:40470278-40470297 MS.gene30557:intron 35.0%
TAACTTCATACATGGTCTTC+TGG - chr4.2:40469942-40469961 MS.gene30557:CDS 35.0%
TAAGGTGAATTGAAAACTGC+AGG + chr4.2:40471695-40471714 None:intergenic 35.0%
TAATGATGCAGAAAGTGAAC+GGG - chr4.2:40470279-40470298 MS.gene30557:intron 35.0%
TATCATACCTTCGCATTATG+GGG + chr4.2:40472696-40472715 None:intergenic 35.0%
TTGCTTGTGGTGATATTGAT+CGG + chr4.2:40473512-40473531 None:intergenic 35.0%
TTTCAGCTTCTTAAAGTGGA+TGG - chr4.2:40471026-40471045 MS.gene30557:CDS 35.0%
TTTGGCAGTGATAAATCTTC+TGG - chr4.2:40474214-40474233 MS.gene30557:intron 35.0%
! AAAGGCCAAAAAAAAGTGCA+AGG + chr4.2:40470512-40470531 None:intergenic 35.0%
! ACAACTCTTTTATCTGCTCA+TGG - chr4.2:40473582-40473601 MS.gene30557:CDS 35.0%
! AGCTAGCTTCTGCAATTATT+TGG - chr4.2:40470735-40470754 MS.gene30557:intron 35.0%
! AGGATAGGAGAAAGCATAAA+AGG - chr4.2:40474500-40474519 MS.gene30557:CDS 35.0%
! ATTTGGAACCTCAAACATCA+TGG - chr4.2:40469730-40469749 MS.gene30557:intron 35.0%
! GCTAGCTTCTGCAATTATTT+GGG - chr4.2:40470736-40470755 MS.gene30557:intron 35.0%
! GTGTCTGCTATCAAAAGTAT+CGG + chr4.2:40469581-40469600 None:intergenic 35.0%
! GTTCTACTCCATATCCTTTT+TGG - chr4.2:40473098-40473117 MS.gene30557:CDS 35.0%
! GTTGCTGGATTACGTTTTAT+AGG - chr4.2:40470667-40470686 MS.gene30557:intron 35.0%
! GTTTTATAGGGCTGAGATTT+TGG - chr4.2:40470680-40470699 MS.gene30557:intron 35.0%
! TTTTATAAAGCGAGACATGG+TGG - chr4.2:40471062-40471081 MS.gene30557:CDS 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr4.2:40473156-40473175 MS.gene30557:intron 35.0%
!! AGGATGAGTTTTATCCTGAA+AGG - chr4.2:40474034-40474053 MS.gene30557:CDS 35.0%
!! CTGATAATGGTAAACTCCTT+TGG - chr4.2:40474196-40474215 MS.gene30557:intron 35.0%
!! GATTCTGTTTCTGAAGAAAG+TGG - chr4.2:40474457-40474476 MS.gene30557:CDS 35.0%
!! GGATGAGTTTTATCCTGAAA+GGG - chr4.2:40474035-40474054 MS.gene30557:CDS 35.0%
!! GTATTTGCTATCTTTGACAG+AGG - chr4.2:40471784-40471803 MS.gene30557:CDS 35.0%
!!! GTCACTTTTCTAGTAATCCA+AGG + chr4.2:40469889-40469908 None:intergenic 35.0%
!!! GTGAACAAGGAGTTTTTTTC+TGG - chr4.2:40474274-40474293 MS.gene30557:intron 35.0%
AACAGAGATCTCCTAGTATG+CGG - chr4.2:40472599-40472618 MS.gene30557:intron 40.0%
AAGAAAGTGGCAAGCATAGA+AGG - chr4.2:40474470-40474489 MS.gene30557:CDS 40.0%
AAGCGGACCTTGAATAACTT+CGG + chr4.2:40471849-40471868 None:intergenic 40.0%
ACCTATTCGCTTACTAACTG+GGG + chr4.2:40473992-40474011 None:intergenic 40.0%
AGAAAGTGGCAAGCATAGAA+GGG - chr4.2:40474471-40474490 MS.gene30557:CDS 40.0%
AGCTCAATCTCAAGCTTCTT+TGG + chr4.2:40474793-40474812 None:intergenic 40.0%
AGGATGGAAAACAAACTGAC+AGG - chr4.2:40470867-40470886 MS.gene30557:intron 40.0%
AGGCTATATTTCAGACGATG+AGG - chr4.2:40474717-40474736 MS.gene30557:intron 40.0%
ATAAACTAACTACTGCAGGC+AGG + chr4.2:40473619-40473638 None:intergenic 40.0%
ATAGAAGGGATGGAAAGGAT+AGG - chr4.2:40474485-40474504 MS.gene30557:CDS 40.0%
ATAGGAGGCCATCTTATTCA+AGG - chr4.2:40472194-40472213 MS.gene30557:intron 40.0%
ATCATACCTTCGCATTATGG+GGG + chr4.2:40472695-40472714 None:intergenic 40.0%
ATCTGCCAAATTTCATCACG+AGG - chr4.2:40474014-40474033 MS.gene30557:CDS 40.0%
CAGTGATAAATCTTCTGGCA+AGG - chr4.2:40474219-40474238 MS.gene30557:intron 40.0%
CCCACTAGAAAGACTTCATA+CGG + chr4.2:40471305-40471324 None:intergenic 40.0%
CCTTTACCTCAAACTACTGT+AGG - chr4.2:40470766-40470785 MS.gene30557:intron 40.0%
CGAATTCCCGAAGTTATTCA+AGG - chr4.2:40471839-40471858 MS.gene30557:CDS 40.0%
CGTTGACACCGGTAATAATT+AGG + chr4.2:40469639-40469658 None:intergenic 40.0%
CTCATCCTCGTGATGAAATT+TGG + chr4.2:40474022-40474041 None:intergenic 40.0%
GAACCTATTCGCTTACTAAC+TGG + chr4.2:40473994-40474013 None:intergenic 40.0%
GAACTCCATTCATCATGAGA+AGG + chr4.2:40472814-40472833 None:intergenic 40.0%
GAGCAAGGAACAGGTAAAAT+CGG - chr4.2:40470900-40470919 MS.gene30557:intron 40.0%
GAGCGCAATGAAAACACAAA+TGG + chr4.2:40470715-40470734 None:intergenic 40.0%
GAGTATATGCAGATCTCCAA+AGG - chr4.2:40472078-40472097 MS.gene30557:intron 40.0%
GGAAAACAAACTGACAGGAA+TGG - chr4.2:40470872-40470891 MS.gene30557:intron 40.0%
GGTATGATAGTAGAACTCCA+CGG - chr4.2:40472707-40472726 MS.gene30557:intron 40.0%
TAAGTCACAGAAGTTTGCAC+CGG - chr4.2:40469473-40469492 MS.gene30557:CDS 40.0%
TAATATATACAGGCCCTCAC+TGG - chr4.2:40471138-40471157 MS.gene30557:CDS 40.0%
TACCTCAAACTACTGTAGGA+CGG - chr4.2:40470770-40470789 MS.gene30557:intron 40.0%
TCAAGCTTCTTTGGATCGTA+TGG + chr4.2:40474784-40474803 None:intergenic 40.0%
TCACAGCTCCAAAAAGGATA+TGG + chr4.2:40473109-40473128 None:intergenic 40.0%
TGAAAGGAATAAGAAAGGCC+AGG - chr4.2:40474101-40474120 MS.gene30557:intron 40.0%
TGAGATTGAGCTGCGTAATA+AGG - chr4.2:40474801-40474820 MS.gene30557:intron 40.0%
TGAGTTAGAAGACAGGAAAG+AGG - chr4.2:40474570-40474589 MS.gene30557:intron 40.0%
TGTGCATTCAATGTCGTGAA+AGG - chr4.2:40473221-40473240 MS.gene30557:intron 40.0%
TGTGGTGATATTGATCGGAT+TGG + chr4.2:40473507-40473526 None:intergenic 40.0%
TGTTCAACTTTGCCTGCTAA+CGG - chr4.2:40471955-40471974 MS.gene30557:intron 40.0%
TTGAAAACTGCAGGTGAATG+TGG + chr4.2:40471686-40471705 None:intergenic 40.0%
TTTGTAGGTGGACATGACAA+AGG - chr4.2:40469843-40469862 MS.gene30557:CDS 40.0%
! CCGTATGAAGTCTTTCTAGT+GGG - chr4.2:40471302-40471321 MS.gene30557:CDS 40.0%
! CCTACAGTAGTTTGAGGTAA+AGG + chr4.2:40470769-40470788 None:intergenic 40.0%
! GAAGTCTTTCTAGTGGGATA+AGG - chr4.2:40471308-40471327 MS.gene30557:CDS 40.0%
! TCATCGTCTGAAATATAGCC+TGG + chr4.2:40474718-40474737 None:intergenic 40.0%
!! AGATCCAACTTTGAAGTCCA+GGG - chr4.2:40470826-40470845 MS.gene30557:intron 40.0%
!! CTAGAGGGTTGATAAACTTC+CGG + chr4.2:40473399-40473418 None:intergenic 40.0%
!! GAAGGCACTCAAGATTTAGT+TGG - chr4.2:40474400-40474419 MS.gene30557:intron 40.0%
!! TATGGTCTGTTGGCTTCTTT+GGG + chr4.2:40473737-40473756 None:intergenic 40.0%
!! TGTGCTAAGAAGTGTTATGG+TGG + chr4.2:40471724-40471743 None:intergenic 40.0%
!! TTATGGTCTGTTGGCTTCTT+TGG + chr4.2:40473738-40473757 None:intergenic 40.0%
AAGACTGCACAGGACTTCTT+TGG + chr4.2:40472894-40472913 None:intergenic 45.0%
AAGACTTCATACGGCGACTT+AGG + chr4.2:40471296-40471315 None:intergenic 45.0%
AAGTCCTGTGCAGTCTTCTA+TGG - chr4.2:40472897-40472916 MS.gene30557:intron 45.0%
AATAAAGGCTAAAAGGGGGG+CGG + chr4.2:40471996-40472015 None:intergenic 45.0%
ACAGAAGTCACCAGTGAACA+AGG - chr4.2:40474261-40474280 MS.gene30557:intron 45.0%
ACAGAAGTTTGCACCGGAAT+TGG - chr4.2:40469479-40469498 MS.gene30557:CDS 45.0%
ACAGGTGATCTATGCTGCAA+AGG + chr4.2:40472748-40472767 None:intergenic 45.0%
ACTAGGAGATCTCTGTTGCA+GGG + chr4.2:40472596-40472615 None:intergenic 45.0%
AGAAAAGTGACCGAGCTTCT+TGG - chr4.2:40469898-40469917 MS.gene30557:CDS 45.0%
AGCGGACCTTGAATAACTTC+GGG + chr4.2:40471848-40471867 None:intergenic 45.0%
AGGTGAACATGGACGTAATG+AGG - chr4.2:40469863-40469882 MS.gene30557:CDS 45.0%
AGTCCTGTGCAGTCTTCTAT+GGG - chr4.2:40472898-40472917 MS.gene30557:intron 45.0%
AGTCTTCTATGGGAAGAGTC+AGG - chr4.2:40472908-40472927 MS.gene30557:intron 45.0%
AGTGCACAGAAAAATGCCAG+TGG - chr4.2:40470383-40470402 MS.gene30557:intron 45.0%
ATCAACCCTCTAGTCCTTTG+CGG - chr4.2:40473406-40473425 MS.gene30557:intron 45.0%
ATGAGAAGGAGACCTCTTAG+GGG + chr4.2:40472800-40472819 None:intergenic 45.0%
ATGGAGAATGCATTCCACGT+CGG + chr4.2:40472252-40472271 None:intergenic 45.0%
CAAACCAGATGCTCCAATTC+CGG + chr4.2:40469495-40469514 None:intergenic 45.0%
CAAGCATAGAAGGGATGGAA+AGG - chr4.2:40474480-40474499 MS.gene30557:CDS 45.0%
CACAAAGATCTCCTCATAGG+AGG - chr4.2:40472179-40472198 MS.gene30557:intron 45.0%
CACCACAAAGATCTCCTCAT+AGG - chr4.2:40472176-40472195 MS.gene30557:intron 45.0%
CACCATCACCTATTAGACGA+AGG - chr4.2:40472560-40472579 MS.gene30557:intron 45.0%
CAGCATAGATCACCTGTTTC+GGG - chr4.2:40472751-40472770 MS.gene30557:intron 45.0%
CATGAGAAGGAGACCTCTTA+GGG + chr4.2:40472801-40472820 None:intergenic 45.0%
CATGCCCTTCTTTGCTTTGA+GGG + chr4.2:40474836-40474855 None:intergenic 45.0%
CTCCTATGAGGAGATCTTTG+TGG + chr4.2:40472181-40472200 None:intergenic 45.0%
CTTAGTGGTATTCGACGCAT+CGG + chr4.2:40472640-40472659 None:intergenic 45.0%
GAAAAGTGACCGAGCTTCTT+GGG - chr4.2:40469899-40469918 MS.gene30557:CDS 45.0%
GAATAAGATGGCCTCCTATG+AGG + chr4.2:40472193-40472212 None:intergenic 45.0%
GAATCCCTGGACTTCAAAGT+TGG + chr4.2:40470833-40470852 None:intergenic 45.0%
GACCTTCGTCTAATAGGTGA+TGG + chr4.2:40472565-40472584 None:intergenic 45.0%
GAGTCCCTCAAAGCAAAGAA+GGG - chr4.2:40474829-40474848 MS.gene30557:intron 45.0%
GATAAATCTTCTGGCAAGGG+AGG - chr4.2:40474223-40474242 MS.gene30557:intron 45.0%
GATCAGCACCACAAATCAGA+AGG - chr4.2:40474382-40474401 MS.gene30557:intron 45.0%
GATCTATGCTGCAAAGGAGA+TGG + chr4.2:40472742-40472761 None:intergenic 45.0%
GATTGGAGACTTATCTGGTG+TGG + chr4.2:40473490-40473509 None:intergenic 45.0%
GCAGCATAGATCACCTGTTT+CGG - chr4.2:40472750-40472769 MS.gene30557:intron 45.0%
GCCGTATGAAGTCTTTCTAG+TGG - chr4.2:40471301-40471320 MS.gene30557:CDS 45.0%
GCGCTCTCTACAAGAGAAAT+AGG + chr4.2:40473926-40473945 None:intergenic 45.0%
GGACATGACAAAGGTGAACA+TGG - chr4.2:40469852-40469871 MS.gene30557:CDS 45.0%
GGATGTCATGGCTAGGTTTA+TGG + chr4.2:40473755-40473774 None:intergenic 45.0%
GGCGTTCCATTTCTTCTGAA+AGG - chr4.2:40472107-40472126 MS.gene30557:CDS 45.0%
GGTCTCCTTCTCATGATGAA+TGG - chr4.2:40472806-40472825 MS.gene30557:intron 45.0%
GTCTTCAAACCCAAGAAGCT+CGG + chr4.2:40469911-40469930 None:intergenic 45.0%
TACTAGGAGATCTCTGTTGC+AGG + chr4.2:40472597-40472616 None:intergenic 45.0%
TATCTCCATCTCCAGTCAGA+AGG - chr4.2:40472851-40472870 MS.gene30557:intron 45.0%
TCAGGTACAGTGACACTTGA+GGG - chr4.2:40472926-40472945 MS.gene30557:intron 45.0%
TCATGAGAAGGAGACCTCTT+AGG + chr4.2:40472802-40472821 None:intergenic 45.0%
TCATGCCCTTCTTTGCTTTG+AGG + chr4.2:40474837-40474856 None:intergenic 45.0%
TCCCCAGTTAGTAAGCGAAT+AGG - chr4.2:40473988-40474007 MS.gene30557:CDS 45.0%
TGAGTCCCTCAAAGCAAAGA+AGG - chr4.2:40474828-40474847 MS.gene30557:intron 45.0%
TGGCTAGGTTTATGGTCTGT+TGG + chr4.2:40473747-40473766 None:intergenic 45.0%
TTAGCATCCAAGAACTGCTG+AGG + chr4.2:40470413-40470432 None:intergenic 45.0%
TTGGATGTAGGGTACATCTG+CGG - chr4.2:40469410-40469429 MS.gene30557:CDS 45.0%
! ACAGGAATGGTGTTAGAGCA+AGG - chr4.2:40470885-40470904 MS.gene30557:intron 45.0%
! ATGGTGTTAGAGCAAGGAAC+AGG - chr4.2:40470891-40470910 MS.gene30557:intron 45.0%
! CTTGAGTGCCTTCTGATTTG+TGG + chr4.2:40474393-40474412 None:intergenic 45.0%
! CTTTCTAGTGGGATAAGGCT+TGG - chr4.2:40471313-40471332 MS.gene30557:CDS 45.0%
! GATCGGATTGGAGACTTATC+TGG + chr4.2:40473495-40473514 None:intergenic 45.0%
! GATCTTTTCTTGCCCGAAAC+AGG + chr4.2:40472766-40472785 None:intergenic 45.0%
! TAGGTGATGGTGATCTACGT+CGG + chr4.2:40472552-40472571 None:intergenic 45.0%
! TCTCTCTTGTTTGCCTCAGA+GGG + chr4.2:40473686-40473705 None:intergenic 45.0%
! TGGATTAGGCTGAAAGCGAT+AGG - chr4.2:40470556-40470575 MS.gene30557:intron 45.0%
! TTCTCTCTTGTTTGCCTCAG+AGG + chr4.2:40473687-40473706 None:intergenic 45.0%
! TTGTTGTTGGGCCAGTGTTT+GGG - chr4.2:40471552-40471571 MS.gene30557:CDS 45.0%
!! ACAGGACTTCTTTGGAGTCT+TGG + chr4.2:40472886-40472905 None:intergenic 45.0%
!! ACTTTGAAGTCCAGGGATTC+AGG - chr4.2:40470833-40470852 MS.gene30557:intron 45.0%
!! AGAGAGCATCTTGGTGAACT+CGG - chr4.2:40471576-40471595 MS.gene30557:CDS 45.0%
!! ATGGTCTGTTGGCTTCTTTG+GGG + chr4.2:40473736-40473755 None:intergenic 45.0%
!! CAGATCCAACTTTGAAGTCC+AGG - chr4.2:40470825-40470844 MS.gene30557:intron 45.0%
!! CTGGTCTTACTTCTTGCTTG+TGG + chr4.2:40473525-40473544 None:intergenic 45.0%
!! CTTTGAAGTCCAGGGATTCA+GGG - chr4.2:40470834-40470853 MS.gene30557:intron 45.0%
!! GTGTTATGGTGGTACCGATA+AGG + chr4.2:40471713-40471732 None:intergenic 45.0%
!! TTTGTTGTTGGGCCAGTGTT+TGG - chr4.2:40471551-40471570 MS.gene30557:CDS 45.0%
!!! GTGGTGCTGATCACTACTTT+TGG + chr4.2:40474374-40474393 None:intergenic 45.0%
AAGACAGGAAAGAGGCCAAG+AGG - chr4.2:40474578-40474597 MS.gene30557:intron 50.0%
AATGTAGTGCCCTGAATCCC+TGG + chr4.2:40470846-40470865 None:intergenic 50.0%
ACAGACCGCAAAGGACTAGA+GGG + chr4.2:40473414-40473433 None:intergenic 50.0%
ACATGGACGTAATGAGGCCT+TGG - chr4.2:40469869-40469888 MS.gene30557:CDS 50.0%
ACGATGAGGAAGCTGAACGA+AGG - chr4.2:40474731-40474750 MS.gene30557:intron 50.0%
ACTGGTGACTTCTGTTGACC+AGG + chr4.2:40474256-40474275 None:intergenic 50.0%
AGAGGCCAAGAGGAGGAAAA+AGG - chr4.2:40474588-40474607 MS.gene30557:intron 50.0%
AGTAGTTTGAGGGCCAGTGA+GGG + chr4.2:40471154-40471173 None:intergenic 50.0%
AGTGGCAAGCATAGAAGGGA+TGG - chr4.2:40474475-40474494 MS.gene30557:CDS 50.0%
ATAAAGGCTAAAAGGGGGGC+GGG + chr4.2:40471995-40472014 None:intergenic 50.0%
ATCGAAAGCGGGAAGAGAGA+CGG - chr4.2:40474644-40474663 MS.gene30557:intron 50.0%
CAACGCAGATCACCTTATCC+TGG - chr4.2:40472442-40472461 MS.gene30557:intron 50.0%
CAACGTGTTAGTGTGGTGTC+TGG - chr4.2:40469654-40469673 MS.gene30557:CDS 50.0%
CATCTGCGGATCAAGACACT+CGG - chr4.2:40469424-40469443 MS.gene30557:CDS 50.0%
CCACACTAACACGTTGACAC+CGG + chr4.2:40469650-40469669 None:intergenic 50.0%
CGATGAGGAAGCTGAACGAA+GGG - chr4.2:40474732-40474751 MS.gene30557:intron 50.0%
CGCATTATGGGGGATTGCAT+TGG + chr4.2:40472685-40472704 None:intergenic 50.0%
CTACGTCGTCGTATAGGAGA+AGG + chr4.2:40472511-40472530 None:intergenic 50.0%
CTAGGAGATCTCTGTTGCAG+GGG + chr4.2:40472595-40472614 None:intergenic 50.0%
CTCAAACTACTGTAGGACGG+AGG - chr4.2:40470773-40470792 MS.gene30557:intron 50.0%
CTCCGTCCTACAGTAGTTTG+AGG + chr4.2:40470775-40470794 None:intergenic 50.0%
CTGCGTCTTTGAACAGGAGA+GGG + chr4.2:40472292-40472311 None:intergenic 50.0%
CTGCTCCTTCACTCGTTTCT+GGG + chr4.2:40473776-40473795 None:intergenic 50.0%
CTTCATACGGCGACTTAGGA+AGG + chr4.2:40471292-40471311 None:intergenic 50.0%
CTTCCCATAGAAGACTGCAC+AGG + chr4.2:40472904-40472923 None:intergenic 50.0%
CTTTGTGGTGAACGTCTTCG+AGG + chr4.2:40472166-40472185 None:intergenic 50.0%
GAACACCCTCTCCTGTTAGA+CGG - chr4.2:40472311-40472330 MS.gene30557:intron 50.0%
GAAGAAGAAGCTGCGAAAGG+AGG - chr4.2:40474615-40474634 MS.gene30557:intron 50.0%
GAATACCACTAAGCCGTGGA+CGG - chr4.2:40472647-40472666 MS.gene30557:intron 50.0%
GAATGCATTCCACGTCGGAT+AGG + chr4.2:40472247-40472266 None:intergenic 50.0%
GACATCCCAGAAACGAGTGA+AGG - chr4.2:40473768-40473787 MS.gene30557:intron 50.0%
GAGGGTGACCTTCGTCTAAT+AGG + chr4.2:40472571-40472590 None:intergenic 50.0%
GATCTCCGTCTAACAGGAGA+GGG + chr4.2:40472319-40472338 None:intergenic 50.0%
GATGCAGAAAGTGAACGGGA+AGG - chr4.2:40470283-40470302 MS.gene30557:intron 50.0%
GCAGATCACCTTATCCTGGA+CGG - chr4.2:40472446-40472465 MS.gene30557:intron 50.0%
GGAAGAGAGACGGCGAAAAA+GGG - chr4.2:40474654-40474673 MS.gene30557:intron 50.0%
GGAAGAGAGGCTGAAGAAAC+TGG - chr4.2:40470629-40470648 MS.gene30557:intron 50.0%
GGAGAAGAAGAAGCTGCGAA+AGG - chr4.2:40474612-40474631 MS.gene30557:intron 50.0%
GGATACAACGGTCTTCACGA+CGG - chr4.2:40472128-40472147 MS.gene30557:CDS 50.0%
GGGACTCAAGCTTCCTTCAA+TGG + chr4.2:40473715-40473734 None:intergenic 50.0%
GGTGAAGTTCTCCTTCTGAC+TGG + chr4.2:40472865-40472884 None:intergenic 50.0%
GGTGATCTACGTCGTCGTAT+AGG + chr4.2:40472517-40472536 None:intergenic 50.0%
GGTGTTCTGCGTCTTTGAAC+AGG + chr4.2:40472298-40472317 None:intergenic 50.0%
GTCAGGTACAGTGACACTTG+AGG - chr4.2:40472925-40472944 MS.gene30557:intron 50.0%
GTCCACATGAAATCCCTCTG+AGG - chr4.2:40473670-40473689 MS.gene30557:intron 50.0%
GTGGTGATACCCATGTTGCA+GGG - chr4.2:40473356-40473375 MS.gene30557:CDS 50.0%
GTTCTCCTTCTGACTGGAGA+TGG + chr4.2:40472859-40472878 None:intergenic 50.0%
TACAGACCGCAAAGGACTAG+AGG + chr4.2:40473415-40473434 None:intergenic 50.0%
TCATCTTCTCCTATCCGACG+TGG - chr4.2:40472235-40472254 MS.gene30557:CDS 50.0%
TCTCTCTGTACAGACCGCAA+AGG + chr4.2:40473423-40473442 None:intergenic 50.0%
TCTGCAGCATAAGAATCGCG+AGG + chr4.2:40474307-40474326 None:intergenic 50.0%
TCTGCGTCTTTGAACAGGAG+AGG + chr4.2:40472293-40472312 None:intergenic 50.0%
TCTGCTCCTTCACTCGTTTC+TGG + chr4.2:40473777-40473796 None:intergenic 50.0%
TGAAAGGGCAGCTAGTCATC+TGG - chr4.2:40474050-40474069 MS.gene30557:CDS 50.0%
TGCAATCCCCCATAATGCGA+AGG - chr4.2:40472686-40472705 MS.gene30557:intron 50.0%
TGCCTCAGAGGGATTTCATG+TGG + chr4.2:40473675-40473694 None:intergenic 50.0%
TGGTGTTCCTCAGCAGTTCT+TGG - chr4.2:40470403-40470422 MS.gene30557:CDS 50.0%
TGTGGTGATACCCATGTTGC+AGG - chr4.2:40473355-40473374 MS.gene30557:CDS 50.0%
! AAAGCGAGACATGGTGGAAG+TGG - chr4.2:40471068-40471087 MS.gene30557:CDS 50.0%
! ACATGGTCTTCTGGAAGCGA+AGG - chr4.2:40469951-40469970 MS.gene30557:CDS 50.0%
! AGATGACTAGCTGCCCTTTC+AGG + chr4.2:40474051-40474070 None:intergenic 50.0%
! CTCCTCCTTTTTCCTCCTCT+TGG + chr4.2:40474596-40474615 None:intergenic 50.0%
! GAGACATGGTGGAAGTGGTT+AGG - chr4.2:40471073-40471092 MS.gene30557:CDS 50.0%
! GATTTACTGGTTGCCCTTGC+AGG + chr4.2:40471814-40471833 None:intergenic 50.0%
! GGATTCAGGGCACTACATTC+AGG - chr4.2:40470847-40470866 MS.gene30557:intron 50.0%
! TCAGGGCACTACATTCAGGA+TGG - chr4.2:40470851-40470870 MS.gene30557:intron 50.0%
!! AGGAGGAGAAGCATCGAAAG+CGG - chr4.2:40474632-40474651 MS.gene30557:intron 50.0%
!! CACTCGTTTCTGGGATGTCA+TGG + chr4.2:40473767-40473786 None:intergenic 50.0%
!! GTTTCTGGGATGTCATGGCT+AGG + chr4.2:40473762-40473781 None:intergenic 50.0%
!! TGGTCTGTTGGCTTCTTTGG+GGG + chr4.2:40473735-40473754 None:intergenic 50.0%
!! TGTTTGGGCAGAGAGCATCT+TGG - chr4.2:40471567-40471586 MS.gene30557:CDS 50.0%
ACAGGAAAGAGGCCAAGAGG+AGG - chr4.2:40474581-40474600 MS.gene30557:intron 55.0%
ACTAACTACTGCAGGCAGGC+AGG + chr4.2:40473615-40473634 None:intergenic 55.0%
AGAAGGAGACCTCTTAGGGG+AGG + chr4.2:40472797-40472816 None:intergenic 55.0%
AGATCTCTGTTGCAGGGGTG+AGG + chr4.2:40472590-40472609 None:intergenic 55.0%
ATAGTAGAACTCCACGGCGC+AGG - chr4.2:40472713-40472732 MS.gene30557:intron 55.0%
CAGTAGTTTGAGGGCCAGTG+AGG + chr4.2:40471155-40471174 None:intergenic 55.0%
CGATCTCCGTCTAACAGGAG+AGG + chr4.2:40472320-40472339 None:intergenic 55.0%
CGTCGAATACCACTAAGCCG+TGG - chr4.2:40472643-40472662 MS.gene30557:intron 55.0%
CGTTGTCGTACTGGAGAAGG+TGG + chr4.2:40472427-40472446 None:intergenic 55.0%
CTGCGTTGTCGTACTGGAGA+AGG + chr4.2:40472430-40472449 None:intergenic 55.0%
GAACTGCTGAGGAACACCAC+TGG + chr4.2:40470402-40470421 None:intergenic 55.0%
GACGGCGAAAAAGGGAAGAG+CGG - chr4.2:40474662-40474681 MS.gene30557:intron 55.0%
GAGGAAGCTGAACGAAGGGA+TGG - chr4.2:40474736-40474755 MS.gene30557:intron 55.0%
GATCTCTGTTGCAGGGGTGA+GGG + chr4.2:40472589-40472608 None:intergenic 55.0%
GATGCTCTCTGCCCAAACAC+TGG + chr4.2:40471566-40471585 None:intergenic 55.0%
GCAGATCTCCAAAGGGTCGA+GGG - chr4.2:40472086-40472105 MS.gene30557:intron 55.0%
GGACGGAGGATTAGATGCGA+AGG - chr4.2:40470787-40470806 MS.gene30557:intron 55.0%
GGAGATGGAGATACACGTGC+AGG + chr4.2:40472844-40472863 None:intergenic 55.0%
GGCCAAGAGGAGGAAAAAGG+AGG - chr4.2:40474591-40474610 MS.gene30557:intron 55.0%
GGGAAGAGAGACGGCGAAAA+AGG - chr4.2:40474653-40474672 MS.gene30557:intron 55.0%
GGTGATCTGCGTTGTCGTAC+TGG + chr4.2:40472436-40472455 None:intergenic 55.0%
GTGATCTGCGTCGTCGTACT+GGG + chr4.2:40472375-40472394 None:intergenic 55.0%
TGACAGAGGCTCACCTGCAA+GGG - chr4.2:40471798-40471817 MS.gene30557:CDS 55.0%
TGATCTGCGTCGTCGTACTG+GGG + chr4.2:40472374-40472393 None:intergenic 55.0%
TGCAGATCTCCAAAGGGTCG+AGG - chr4.2:40472085-40472104 MS.gene30557:intron 55.0%
TTGACAGAGGCTCACCTGCA+AGG - chr4.2:40471797-40471816 MS.gene30557:CDS 55.0%
! CCGGTGTCAACGTGTTAGTG+TGG - chr4.2:40469647-40469666 MS.gene30557:CDS 55.0%
! GGTATTCGACGCATCGGTGA+AGG + chr4.2:40472634-40472653 None:intergenic 55.0%
! GGTGTTCTGCGTCGACGAAA+TGG + chr4.2:40472271-40472290 None:intergenic 55.0%
! TGCACCGGAATTGGAGCATC+TGG - chr4.2:40469488-40469507 MS.gene30557:CDS 55.0%
!! GGAGGAGAAGCATCGAAAGC+GGG - chr4.2:40474633-40474652 MS.gene30557:intron 55.0%
ATGGAACGCCCTCGACCCTT+TGG + chr4.2:40472097-40472116 None:intergenic 60.0%
CTACGTCGGTGCACAGGAGA+AGG + chr4.2:40472538-40472557 None:intergenic 60.0%
CTGCAAGTGCCTCCCCTAAG+AGG - chr4.2:40472785-40472804 MS.gene30557:intron 60.0%
CTGCGTCGTCGTACTGGAGA+GGG + chr4.2:40472370-40472389 None:intergenic 60.0%
CTGCGTCTCCGTCCAGGATA+AGG + chr4.2:40472457-40472476 None:intergenic 60.0%
CTGCGTCTTCGCACAGGAGA+GGG + chr4.2:40472484-40472503 None:intergenic 60.0%
CTTCGTCGTCGCACTGGAGA+GGG + chr4.2:40472343-40472362 None:intergenic 60.0%
GAGAGCTTGACCTCCGTCCA+CGG + chr4.2:40472663-40472682 None:intergenic 60.0%
GAGGGCGATCTCCGTCTAAC+AGG + chr4.2:40472325-40472344 None:intergenic 60.0%
GATCTCCTAGTATGCGGCGC+AGG - chr4.2:40472605-40472624 MS.gene30557:intron 60.0%
GGTGATCTACGTCGGTGCAC+AGG + chr4.2:40472544-40472563 None:intergenic 60.0%
GGTGATCTGCGTCGTCGTAC+TGG + chr4.2:40472376-40472395 None:intergenic 60.0%
GGTGATCTGCGTCTTCGCAC+AGG + chr4.2:40472490-40472509 None:intergenic 60.0%
GGTGATCTTCGTCGTCGCAC+TGG + chr4.2:40472349-40472368 None:intergenic 60.0%
TACCACTAAGCCGTGGACGG+AGG - chr4.2:40472650-40472669 MS.gene30557:intron 60.0%
TCTGCGTCGTCGTACTGGAG+AGG + chr4.2:40472371-40472390 None:intergenic 60.0%
TCTGCGTCTTCGCACAGGAG+AGG + chr4.2:40472485-40472504 None:intergenic 60.0%
TCTTCGTCGTCGCACTGGAG+AGG + chr4.2:40472344-40472363 None:intergenic 60.0%
ACTACTGCAGGCAGGCAGGC+AGG + chr4.2:40473611-40473630 None:intergenic 65.0%
CGTCGTCGTACTGGGGAAGG+TGG + chr4.2:40472397-40472416 None:intergenic 65.0%
CTGCGTCGTCGTACTGGGGA+AGG + chr4.2:40472400-40472419 None:intergenic 65.0%
GACCTCCGTCCACGGCTTAG+TGG + chr4.2:40472655-40472674 None:intergenic 65.0%
GGAGATCTGCGTCTCCGTCC+AGG + chr4.2:40472463-40472482 None:intergenic 65.0%
GGTGACCTGCGCCGCATACT+AGG + chr4.2:40472613-40472632 None:intergenic 65.0%
GGAGATGGAGACCTGCGCCG+TGG + chr4.2:40472727-40472746 None:intergenic 70.0%
GGCAAGGGAGGCGAGTCTCC+TGG - chr4.2:40474235-40474254 MS.gene30557:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 40469087 40474864 40469087 ID=MS.gene30557
chr4.2 mRNA 40469087 40474864 40469087 ID=MS.gene30557.t1;Parent=MS.gene30557
chr4.2 exon 40474844 40474864 40474844 ID=MS.gene30557.t1.exon1;Parent=MS.gene30557.t1
chr4.2 CDS 40474844 40474864 40474844 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40474442 40474531 40474442 ID=MS.gene30557.t1.exon2;Parent=MS.gene30557.t1
chr4.2 CDS 40474442 40474531 40474442 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40473979 40474101 40473979 ID=MS.gene30557.t1.exon3;Parent=MS.gene30557.t1
chr4.2 CDS 40473979 40474101 40473979 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40473494 40473661 40473494 ID=MS.gene30557.t1.exon4;Parent=MS.gene30557.t1
chr4.2 CDS 40473494 40473661 40473494 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40473301 40473387 40473301 ID=MS.gene30557.t1.exon5;Parent=MS.gene30557.t1
chr4.2 CDS 40473301 40473387 40473301 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40473039 40473163 40473039 ID=MS.gene30557.t1.exon6;Parent=MS.gene30557.t1
chr4.2 CDS 40473039 40473163 40473039 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40472234 40472281 40472234 ID=MS.gene30557.t1.exon7;Parent=MS.gene30557.t1
chr4.2 CDS 40472234 40472281 40472234 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40472091 40472147 40472091 ID=MS.gene30557.t1.exon8;Parent=MS.gene30557.t1
chr4.2 CDS 40472091 40472147 40472091 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40471022 40471861 40471022 ID=MS.gene30557.t1.exon9;Parent=MS.gene30557.t1
chr4.2 CDS 40471022 40471861 40471022 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40470392 40470574 40470392 ID=MS.gene30557.t1.exon10;Parent=MS.gene30557.t1
chr4.2 CDS 40470392 40470574 40470392 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40470137 40470280 40470137 ID=MS.gene30557.t1.exon11;Parent=MS.gene30557.t1
chr4.2 CDS 40470137 40470280 40470137 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40469818 40470012 40469818 ID=MS.gene30557.t1.exon12;Parent=MS.gene30557.t1
chr4.2 CDS 40469818 40470012 40469818 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
chr4.2 exon 40469087 40469729 40469087 ID=MS.gene30557.t1.exon13;Parent=MS.gene30557.t1
chr4.2 CDS 40469087 40469729 40469087 ID=cds.MS.gene30557.t1;Parent=MS.gene30557.t1
Gene Sequence

>MS.gene30557

ATGTCAGGCGGTTTTTTTCGAGTAAGTTCATCGCAAACCGTTGAATTCACCATTTCAATTATTCATTTGCTTTTTGTAATAATGAATTGTTATTTAATCATTTTTCAGATCTTATTTGTGACTTTAATTTGATGAAATTAAGTACTGTATGCTATGAAATTAGGGTTCAAAACTTTGAATATTTGTTGATGAAACTGAATTAAGATTTGTGTTGTAATTCAACTTGTTATAGTGATTTTTTGGCCTGTTTTTAAATTTTTGTATATTCATAATTGAAAAATGTTACTTAGCTAGTTAGCTTATGAAATATAACATGTTGAATTTTGGATGTAGGGTACATCTGCGGATCAAGACACTCGGTTTTCGAACAAGCAAGCGAAGCTGCTTAAGTCACAGAAGTTTGCACCGGAATTGGAGCATCTGGTTTGTTTCCTTGATTGATTAATTTAGCTTAGTTGATTTTTTTTATAGGGAGAATTGTCTCTATAGCACCGATACTTTTGATAGCAGACACCGACAAATGTGATTACATTCAATTATGCCATTTTTCCTAATTATTACCGGTGTCAACGTGTTAGTGTGGTGTCTGGTGTTCGCGTCTGTGTCAGTGCTTTGTAGAGAACTATTTCCAACTGCTTTTGAAATTTGGAACCTCAAACATCATGGTGTATATGATCTCGATATATTTATTTATTTTAACTAGCGACATCGCTTTCCTCTGCTATTTTTTTGATGTAAGTCGTGCTTGAAAAATGATTTGTAGGTGGACATGACAAAGGTGAACATGGACGTAATGAGGCCTTGGATTACTAGAAAAGTGACCGAGCTTCTTGGGTTTGAAGACGAAGTGCTTATTAACTTCATACATGGTCTTCTGGAAGCGAAGGTAATTTATTGTTTTTGAACTATTTTGGTTATACGGTAATCTTGGAGATTAATGGCGCTTTCAAAGTTCTATTTTTTATTTGCTGAATACTTACTTTATCGTTTCTTTATCATCATTATTATTATTATCATTAAATATTAAATCGTATTTGTTGAAATCAATATGGCATTTATTTCAAACATTATAATCACTTTGAGTTTGAGTTGTAACTGTGCAATCTTTTTCCTCTAAATGAACTATCATAGATTTACATGCACTTTCTGATAATGCCATGCTTTTATTTTTTACCTTGCAACATTCGGTTTGTAATGATGCAGAAAGTGAACGGGAAGGAAATTCAAATACAAATTACTGGATTCATGGAAAAAAACACCGGTAAGTTCATGAAAGAGCTTTGGACACTTCTTCTCAGTGCACAGAAAAATGCCAGTGGTGTTCCTCAGCAGTTCTTGGATGCTAAAGAAGAAGAACTCCTGAAAAAGAAGGTTCTTTTAAGTCTTGATTTACCATTCATTGGGTATCAAAATACCTTTTATCCTTGCACTTTTTTTTGGCCTTTCTGAATAAAGTTTTTTACTGTCGATGGATTAGGCTGAAAGCGATAGGATAACAAGTGAAATTCAGAGGAAGAAAGATAAGGAGAGTAAAGATATCATGGAAGAGAGGCTGAAGAAACTGGTAATACTATTTGTTCGTTGCTGGATTACGTTTTATAGGGCTGAGATTTTGGTTTTAACTTCCATTTGTGTTTTCATTGCGCTCAGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCTCAAACTACTGTAGGACGGAGGATTAGATGCGAAGGATAATGATGCTGCTTCAGATCCAACTTTGAAGTCCAGGGATTCAGGGCACTACATTCAGGATGGAAAACAAACTGACAGGAATGGTGTTAGAGCAAGGAACAGGTAAAATCGGCCGATTCCTTCTTTTTTAATCATTATGTGCCGATGTTTGTTTCTATTTCATTTTCTTATGGTTTCACAGTGGGTCAAACATCAATATATAAGCTTAATTATGTTTTCAGCTTCTTAAAGTGGATGGACTTGTGTTATGATTTTATAAAGCGAGACATGGTGGAAGTGGTTAGGCATCATTCTAGCAGTTGCATGCATAACTAAAATATGCATACATAATATATACAGGCCCTCACTGGCCCTCAAACTACTGTGTTATGAAGTCATTTTAATCCCACAAAAATATGCATAACTAAGAACATTAGTAGCTGTATCTCACTTAGAATATAAACTTAATAACAAGCCAACAAAAACAAATTTTGTAGAACCTTCCTAAGTCGCCGTATGAAGTCTTTCTAGTGGGATAAGGCTTGGTTGTTGTTGTTGCTCATAACTTTCCTTGACAACTATAGAATTGGATAACATAATAGTTAATGCAAAGCATTGGGAAAATCACATGAAATTTGTAAAACTTTCTGTGTTATGAAGTCATTTTAATCCATTGTTTTTTGATATTTTGTATGTTGTATTAGATGTTGGAATAGCCTCTGTTCAGTTTTTCAATTTTCTTTTAGCTTAAACTCTATTATTTTGTTGTTGGGCCAGTGTTTGGGCAGAGAGCATCTTGGTGAACTCGGCTCTGCACCTAAAAACCCTGTTAAATGAGTTCTTGAATCTTTAGTACTAATTAGCTTTTACTCTCTTATAGGATTTCTAGATCTCCACATTCACCTGCAGTTTTCAATTCACCTTATCGGTACCACCATAACACTTCTTAGCACATTTTCCATCTTGTATATTGGATTGAAATGCTCTAAATGTTGTATTTGCTATCTTTGACAGAGGCTCACCTGCAAGGGCAACCAGTAAATCATTTTCGAATTCCCGAAGTTATTCAAGGTCCGCTTTTGCATATATGCTTACTTAGTTTCGTTTGGCTTTATATGTTCATGTAGCTTTTGTCATTCAGTAGCATAATCTGATGGGTATTAGATGTTCAACTTTGCCTGCTAACGGATCTTTATTTTTCTCCCGCCCCCCTTTTAGCCTTTATTAATGAGTAATATATTGCACATTTAATTTTTATTTGGATTTGTCATTTTGAACTAATGTCAAGGAGTATATGCAGATCTCCAAAGGGTCGAGGGCGTTCCATTTCTTCTGAAAGGATACAACGGTCTTCACGACGGCAATCTATTTCTCCTCGAAGACGTTCACCACAAAGATCTCCTCATAGGAGGCCATCTTATTCAAGGAGAAGATCTAGATCTAGCTCATCTTCTCCTATCCGACGTGGAATGCATTCTCCATTTCGTCGACGCAGAACACCCTCTCCTGTTCAAAGACGCAGAACACCCTCTCCTGTTAGACGGAGATCGCCCTCTCCAGTGCGACGACGAAGATCACCCTCTCCAGTACGACGACGCAGATCACCACCTTCCCCAGTACGACGACGCAGATCACCACCTTCTCCAGTACGACAACGCAGATCACCTTATCCTGGACGGAGACGCAGATCTCCCTCTCCTGTGCGAAGACGCAGATCACCTTCTCCTATACGACGACGTAGATCACCTTCTCCTGTGCACCGACGTAGATCACCATCACCTATTAGACGAAGGTCACCCTCACCCCTGCAACAGAGATCTCCTAGTATGCGGCGCAGGTCACCTTCACCGATGCGTCGAATACCACTAAGCCGTGGACGGAGGTCAAGCTCTCCAATGCAATCCCCCATAATGCGAAGGTATGATAGTAGAACTCCACGGCGCAGGTCTCCATCTCCTTTGCAGCATAGATCACCTGTTTCGGGCAAGAAAAGATCTGCAAGTGCCTCCCCTAAGAGGTCTCCTTCTCATGATGAATGGAGTTCTCAGTCTCCTGCACGTGTATCTCCATCTCCAGTCAGAAGGAGAACTTCACCAAGACTCCAAAGAAGTCCTGTGCAGTCTTCTATGGGAAGAGTCAGGTACAGTGACACTTGAGGGACTGCTTGAATAAGTTTGTTTGATTTTTCTTTGGTGTGCATGATTTTAATGTGATGATAAAAAAACTTTTAAAAATGAAATATTTTAAATTTTTATTTTATTCAATTTTGAAGTAGGCTTATAGTTTAATAACCAGAATTACTATTATGGTTCTACTCCATATCCTTTTTGGAGCTGTGAAATTTTGCAGACTAATTTTTTAAGGGAAATGTTAACTTGTGCCCTTAAGGCACAAGTTTAGAAGTCAAATGTAGAAACTTATTTTTGGAGATTGTGCATTCAATGTCGTGAAAGGTTAAAAGCTTATTTTTTCAATACAACACTTGTGTTTTAATTCTTTTTTTAGATCCTTAACATGACCCATTTTTTAAATAAGGTTTGTTCTTGCAAGAAAATTTGTGAAATCTGTGGTGATACCCATGTTGCAGGGTGCAAAAAATATTGTCACCGGAAGTTTATCAACCCTCTAGTCCTTTGCGGTCTGTACAGAGAGATAAAAATGGCAAAGCTTCAGGCTATAAATCACAAGATTCAATGTCCACACCAGATAAGTCTCCAATCCGATCAATATCACCACAAGCAAGAAGTAAGACCAGCTGTAAAAATAGAAGGTAACTTTCCTTGACTTCTCATACAACTCTTTTATCTGCTCATGGTTGCCTGCCTGCCTGCCTGCAGTAGTTAGTTTATGCATATTTATTTTGGCTTTTGAAAATGTATAGTCCACATGAAATCCCTCTGAGGCAAACAAGAGAGAAATTGACCATTGAAGGAAGCTTGAGTCCCCCAAAGAAGCCAACAGACCATAAACCTAGCCATGACATCCCAGAAACGAGTGAAGGAGCAGAAGAAGCATATTATTCTAGGTTTGAATACGAATTGGATAGCTTTCATTTACTTCTTTTAAATATACGAAATGTAAATCACTGTCATTGATTTGTTTATTGTTTTGCTTGCTTTTTTTTTTTTTTCTTCCTATTTCTCTTGTAGAGAGCGCAGAGATCCTAAATCAAATTCATCAGAAAAGAAATCAAGACACTCCCCAGTTAGTAAGCGAATAGGTTCATCTGCCAAATTTCATCACGAGGATGAGTTTTATCCTGAAAGGGCAGCTAGTCATCTGGCTTCTGATTCTAAGCATTATGATAATAATGAAAGGAATAAGAAAGGCCAGGATATAAAATGGTAATATGATTGGCATACTGCACTTGTTCTAACTAGTTTGAATGACTTCACACTGTACATCTCTGATAATGGTAAACTCCTTTGGCAGTGATAAATCTTCTGGCAAGGGAGGCGAGTCTCCTGGTCAACAGAAGTCACCAGTGAACAAGGAGTTTTTTTCTGGCGAGAAGCCTCGCGATTCTTATGCTGCAGAAACAAAAAAAACTGATGACAAGGATCAATTCAATTCAAAATATGCCAAAAGTAGTGATCAGCACCACAAATCAGAAGGCACTCAAGATTTAGTTGGAAAAGTTGATCACATCAATCAGAGTGCTTCTTATGATTCTGTTTCTGAAGAAAGTGGCAAGCATAGAAGGGATGGAAAGGATAGGAGAAAGCATAAAAGGTCAGAGAGAAAAGTTGTTTCTTCTGATGAGAATGATAGTTATGATTCTGAGTTAGAAGACAGGAAAGAGGCCAAGAGGAGGAAAAAGGAGGAGAAGAAGAAGCTGCGAAAGGAGGAGAAGCATCGAAAGCGGGAAGAGAGACGGCGAAAAAGGGAAGAGCGGCATGCTGAAAAGCTGAAAATGAAGAGTAAACCAGGCTATATTTCAGACGATGAGGAAGCTGAACGAAGGGATGGTCACCAAAGTGATGATGAAGAACCATACGATCCAAAGAAGCTTGAGATTGAGCTGCGTAATAAGGCTCTTGAGTCCCTCAAAGCAAAGAAGGGCATGAATAATTAA
Protein sequence

>MS.gene30557.t1

MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMDVMRPWITRKVTELLGFEDEVLINFIHGLLEAKKVNGKEIQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQQFLDAKEEELLKKKAESDRITSEIQRKKDKESKDIMEERLKKLDGGLDAKDNDAASDPTLKSRDSGHYIQDGKQTDRNGVRARNRISRSPHSPAVFNSPYRGSPARATSKSFSNSRSYSRSPKGRGRSISSERIQRSSRRQSISPRRRSPQRSPHRRPSYSRRRSRSSSSSPIRRGMHSPFRRRRTPSPVQRRRTPSPVRRRSPSPVRRRRSPSPVRRRRSPPSPVRRRRSPPSPVRQRRSPYPGRRRRSPSPVRRRRSPSPIRRRRSPSPVHRRRSPSPIRRRSPSPLQQRSPSMRRRSPSPMRRIPLSRGRRSSSPMQSPIMRRYDSRTPRRRSPSPLQHRSPVSGKKRSASASPKRSPSHDEWSSQSPARVSPSPVRRRTSPRLQRSPVQSSMGRVRVQKILSPEVYQPSSPLRSVQRDKNGKASGYKSQDSMSTPDKSPIRSISPQARSKTSCKNRSPHEIPLRQTREKLTIEGSLSPPKKPTDHKPSHDIPETSEGAEEAYYSRERRDPKSNSSEKKSRHSPVSKRIGSSAKFHHEDEFYPERAASHLASDSKHYDNNERNKKGQDIKCDKSSGKGGESPGQQKSPVNKEFFSGEKPRDSYAAETKKTDDKDQFNSKYAKSSDQHHKSEGTQDLVGKVDHINQSASYDSVSEESGKHRRDGKDRRKHKRSERKVVSSDENDSYDSELEDRKEAKRRKKEEKKKLRKEEKHRKREERRRKREERHAEKLKMKSKPGYISDDEEAERRDGHQSDDEEPYDPKKLEIELRNKALESLKAKKGMNN