AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41129

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41129.t1 MTR_4g064740 96.166 913 27 4 1 907 1 911 0.0 1702
MS.gene41129.t1 MTR_4g064740 94.633 913 27 4 1 907 1 897 0.0 1347
MS.gene41129.t1 MTR_4g064740 90.649 909 19 4 1 907 1 845 0.0 1251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41129.t1 AT2G29210 58.893 253 94 3 1 252 1 244 3.41e-84 289
MS.gene41129.t1 AT2G29210 58.893 253 94 3 1 252 1 244 4.27e-84 289

Find 238 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGTCTGTTGGCTTCTT+TGG 0.135375 4.1:+36050518 None:intergenic
TATGGTCTGTTGGCTTCTTT+GGG 0.166124 4.1:+36050519 None:intergenic
CTCATCCTCGTGATGAAATT+TGG 0.210053 4.1:+36050227 None:intergenic
GGATGTCATGGCTAGGTTTA+TGG 0.238409 4.1:+36050501 None:intergenic
ACTTTGAAGTCCAGGGATTC+AGG 0.246504 4.1:-36053418 MS.gene41129:CDS
ACTATCATACCTTCGCATTA+TGG 0.249458 4.1:+36051554 None:intergenic
GGGAAGAGAGACGGCGAAAA+AGG 0.256769 4.1:-36049593 MS.gene41129:CDS
AAGTCCTGTGCAGTCTTCTA+TGG 0.258541 4.1:-36051352 MS.gene41129:CDS
AGCTCAATCTCAAGCTTCTT+TGG 0.264195 4.1:+36049456 None:intergenic
TCTGCTCCTTCACTCGTCTC+TGG 0.265737 4.1:+36050479 None:intergenic
CATGCTCTTCTTTGCTTTGA+GGG 0.276810 4.1:+36049413 None:intergenic
TCATGAGAAGGAGACCTCTT+AGG 0.281842 4.1:+36051450 None:intergenic
GGAATTCGAAAATGATTTAC+TGG 0.282450 4.1:+36052425 None:intergenic
CAGCATAGATCACCTGTTTC+GGG 0.285960 4.1:-36051498 MS.gene41129:CDS
TGGTGTTCCTCAGCAGTTCT+TGG 0.291429 4.1:-36053848 MS.gene41129:CDS
GAGATTCAAATACAAATTAC+TGG 0.293003 4.1:-36053946 MS.gene41129:CDS
CAGAAGAAGCATATTATTCT+AGG 0.297335 4.1:-36050460 MS.gene41129:intron
GAACCTATTCGCTTACTAAC+TGG 0.299039 4.1:+36050255 None:intergenic
CTTGAGTGCCTTCTGATTTG+TGG 0.303451 4.1:+36049856 None:intergenic
AGATGACTAGCTGCCCTTTC+AGG 0.304384 4.1:+36050198 None:intergenic
ACAGAAGTTTGCACCGGAAT+TGG 0.310132 4.1:-36054772 MS.gene41129:CDS
CTATCATACCTTCGCATTAT+GGG 0.312064 4.1:+36051555 None:intergenic
TAACTTCATACATGGTCTTC+TGG 0.314039 4.1:-36054309 MS.gene41129:CDS
AAGACTGCACAGGACTTCTT+TGG 0.314046 4.1:+36051358 None:intergenic
AATACAAATTACTGGATTCA+TGG 0.319893 4.1:-36053938 MS.gene41129:CDS
AGGATAGGAGAAAGCATAAA+AGG 0.322404 4.1:-36049746 MS.gene41129:CDS
AGAGGCCAAGAGGAGGAAAA+AGG 0.328053 4.1:-36049658 MS.gene41129:CDS
TGAGATTGAGCTGCGTAATA+AGG 0.334168 4.1:-36049445 MS.gene41129:CDS
GGTGATCTGCGTCGTCGTAC+TGG 0.335851 4.1:+36051846 None:intergenic
GATCGGATTGGAGACTTATC+TGG 0.337789 4.1:+36050757 None:intergenic
AAGAAAGTGGCAAGCATAGA+AGG 0.346706 4.1:-36049776 MS.gene41129:CDS
TTTGGCAGTGATAAATCTTC+TGG 0.349282 4.1:-36050032 MS.gene41129:intron
GGACATGACAAAGGTGAATA+TGG 0.355949 4.1:-36054399 MS.gene41129:CDS
GCAGCATAGATCACCTGTTT+CGG 0.356772 4.1:-36051499 MS.gene41129:CDS
TCATGCTCTTCTTTGCTTTG+AGG 0.359216 4.1:+36049412 None:intergenic
TACTAGGAGATCTCTGTTGC+AGG 0.361598 4.1:+36051655 None:intergenic
AGAAAGGCCAGGATATAAAA+TGG 0.364329 4.1:-36050134 MS.gene41129:intron
GATTTACTGGTTGCCCTTGC+AGG 0.368060 4.1:+36052438 None:intergenic
ACAGGACTTCTTTGGAGTCT+TGG 0.369222 4.1:+36051366 None:intergenic
CAAACCAGATGCTCCAATTC+CGG 0.371274 4.1:+36054759 None:intergenic
TGCACCGGAATTGGAGCATC+TGG 0.375069 4.1:-36054763 MS.gene41129:intron
TGGCTAGGTTTATGGTCTGT+TGG 0.380139 4.1:+36050509 None:intergenic
ATCAACCCTCTAGTCCTTTG+CGG 0.382879 4.1:-36050843 MS.gene41129:CDS
GAAAAGTGACCGAGCTTCTT+GGG 0.391597 4.1:-36054352 MS.gene41129:CDS
AAGCTCTTTCATGAACTTAC+CGG 0.392718 4.1:+36053906 None:intergenic
GAGGGTGACCTTCGTCTAAT+AGG 0.395608 4.1:+36051681 None:intergenic
TAAGGAGAGTAAAGATATCA+TGG 0.397290 4.1:-36053643 MS.gene41129:CDS
GGTGATCTACGTCGTCGTAT+AGG 0.402707 4.1:+36051735 None:intergenic
CATGAGAAGGAGACCTCTTA+GGG 0.404136 4.1:+36051451 None:intergenic
GTGATCTGCGTCGTCGTACT+GGG 0.406823 4.1:+36051847 None:intergenic
ATGGAACGCCCTCGACCCTT+TGG 0.410183 4.1:+36052155 None:intergenic
AGAAAAGTGACCGAGCTTCT+TGG 0.412238 4.1:-36054353 MS.gene41129:CDS
GGTGATCTGCGTTGTCGTAC+TGG 0.413128 4.1:+36051816 None:intergenic
CTGCGTCTCCGTGCAGGATA+AGG 0.413723 4.1:+36051795 None:intergenic
CTGTATCCTTTCAGAAGAAA+TGG 0.415338 4.1:+36052136 None:intergenic
GAGGGCGATCTCCGTCTAAC+AGG 0.415650 4.1:+36051927 None:intergenic
AGATCTCTGTTGCAGGGGTG+AGG 0.421202 4.1:+36051662 None:intergenic
GGAAGAGAGGCTGAAGAAAC+TGG 0.422262 4.1:-36053622 MS.gene41129:intron
CTGCTCCTTCACTCGTCTCT+GGG 0.422657 4.1:+36050480 None:intergenic
GGGACTCAAGCTTCCTTCAA+TGG 0.423755 4.1:+36050541 None:intergenic
GACCTCCGTCCACGGCTTAG+TGG 0.424037 4.1:+36051597 None:intergenic
GGATTCAGGGCACTACATTC+AGG 0.425295 4.1:-36053404 MS.gene41129:CDS
GGTGTTCTGCGTCTTTGAAC+AGG 0.425400 4.1:+36051954 None:intergenic
CGAATTCCCGAAGTTATTCA+AGG 0.427764 4.1:-36052410 MS.gene41129:intron
GAAGGCACTCAAGATTTAGT+TGG 0.429516 4.1:-36049846 MS.gene41129:CDS
GTGGTGCTGATCACTACTTT+TGG 0.430067 4.1:+36049875 None:intergenic
GTAAGTTCATGAAAGAGCTT+TGG 0.430325 4.1:-36053903 MS.gene41129:CDS
AGAGAGAAATTGACCATTGA+AGG 0.434146 4.1:-36050554 MS.gene41129:CDS
GGTGACCTGCGCCGCATACT+AGG 0.436692 4.1:+36051639 None:intergenic
GGTGTTCTGCGTCGACGAAA+TGG 0.439002 4.1:+36051981 None:intergenic
CAGATCCAACTTTGAAGTCC+AGG 0.450428 4.1:-36053426 MS.gene41129:CDS
TTCTCTCTTGTTTGCCTCAG+AGG 0.451538 4.1:+36050569 None:intergenic
TCTCTCTTGTTTGCCTCAGA+GGG 0.451933 4.1:+36050570 None:intergenic
CTAGAGGGTTGATAAACTTC+CGG 0.454350 4.1:+36050853 None:intergenic
TCAAGCTTCTTTGGATCGTA+TGG 0.456459 4.1:+36049465 None:intergenic
CTTTGAAGTCCAGGGATTCA+GGG 0.458452 4.1:-36053417 MS.gene41129:CDS
GGTGATCTGCGTCGTCGTAC+TGG 0.460733 4.1:+36051876 None:intergenic
CTGCAAGTGCCTCCCCTAAG+AGG 0.462910 4.1:-36051464 MS.gene41129:CDS
AATGTAGTGCCCTGAATCCC+TGG 0.465080 4.1:+36053408 None:intergenic
GGCAAGGGAGGCGAGTCTCC+TGG 0.466974 4.1:-36050011 MS.gene41129:CDS
GAATCCCTGGACTTCAAAGT+TGG 0.474942 4.1:+36053421 None:intergenic
AGCGGACCTTGAATAACTTC+GGG 0.477075 4.1:+36052404 None:intergenic
ATAGGAGGCCATCTTATTCA+AGG 0.477162 4.1:-36052055 MS.gene41129:CDS
TAATGATGCAGAAAGTGAAC+GGG 0.480070 4.1:-36053972 MS.gene41129:intron
GATCTTCTCCTTGAATAAGA+TGG 0.481430 4.1:+36052047 None:intergenic
GATTCTGTTTCTGAAGAAAG+TGG 0.489143 4.1:-36049789 MS.gene41129:CDS
ATATGGACGTAATGAGGCCT+TGG 0.489542 4.1:-36054382 MS.gene41129:CDS
CTCCTATGAGGAGATCTTTG+TGG 0.490568 4.1:+36052071 None:intergenic
AAGCGGACCTTGAATAACTT+CGG 0.491825 4.1:+36052403 None:intergenic
GGTGATCTTCGTCGTCGCAC+TGG 0.494165 4.1:+36051903 None:intergenic
GGCGTTCCATTTCTTCTGAA+AGG 0.495811 4.1:-36052142 MS.gene41129:CDS
TTGCTTGTGGTGATATTGAT+CGG 0.498595 4.1:+36050740 None:intergenic
AACCTATTCGCTTACTAACT+GGG 0.499232 4.1:+36050256 None:intergenic
GGAGGAGAAGCATCGAAAGC+GGG 0.501336 4.1:-36049613 MS.gene41129:CDS
GGAGATCTGCGTCTCCGTGC+AGG 0.505031 4.1:+36051789 None:intergenic
GGTCTCCTTCTCATGATGAA+TGG 0.507530 4.1:-36051443 MS.gene41129:CDS
CACTCGTCTCTGGGATGTCA+TGG 0.508313 4.1:+36050489 None:intergenic
TGAAAGGGCAGCTAGTCATC+TGG 0.509913 4.1:-36050196 MS.gene41129:CDS
CTTCGTCGTCGCACTGGAGA+GGG 0.511910 4.1:+36051909 None:intergenic
ATGGTTCTTCATCATCACTT+TGG 0.512444 4.1:+36049484 None:intergenic
GGTATTCGACGCATCGGTGA+AGG 0.512792 4.1:+36051618 None:intergenic
CTGCGTCTTCGCACAGGAGA+GGG 0.514178 4.1:+36051768 None:intergenic
TCATCGTCTGAAATATAGCC+TGG 0.514329 4.1:+36049531 None:intergenic
GGTGAAGTTCTCCTTCTGAC+TGG 0.515094 4.1:+36051387 None:intergenic
GTGTTATGGTGGTACCGATA+AGG 0.515482 4.1:+36052539 None:intergenic
CTGCGTCGTCGTACTGGGGA+AGG 0.515506 4.1:+36051852 None:intergenic
AGATCCAACTTTGAAGTCCA+GGG 0.516379 4.1:-36053425 MS.gene41129:CDS
GAATAAGATGGCCTCCTATG+AGG 0.522443 4.1:+36052059 None:intergenic
CTTTGTGGTGAACGTCTTCG+AGG 0.524203 4.1:+36052086 None:intergenic
TCTCGCCGTCACAACATGTC+AGG 0.524525 4.1:-36055178 None:intergenic
GATCTATGCTGCAAAGGAGA+TGG 0.525694 4.1:+36051510 None:intergenic
ATGGTGTTAGAGCAAGGAAC+AGG 0.526411 4.1:-36053360 MS.gene41129:intron
AATAATGAAAGGAATAAGAA+AGG 0.530279 4.1:-36050150 MS.gene41129:CDS
TGGTCTGTTGGCTTCTTTGG+GGG 0.531174 4.1:+36050521 None:intergenic
AATTCAGAGGAAGAAAGATA+AGG 0.532772 4.1:-36053661 MS.gene41129:CDS
TATCATACCTTCGCATTATG+GGG 0.534876 4.1:+36051556 None:intergenic
GAAGAAGAAGCTGCGAAAGG+AGG 0.535503 4.1:-36049631 MS.gene41129:CDS
GATCTCTGTTGCAGGGGTGA+GGG 0.537291 4.1:+36051663 None:intergenic
CACCACAAAGATCTCCTCAT+AGG 0.537344 4.1:-36052073 MS.gene41129:CDS
TGCAGATCTCCAAAGGGTCG+AGG 0.538902 4.1:-36052164 MS.gene41129:intron
GTCTTCAAACCCAAGAAGCT+CGG 0.539593 4.1:+36054343 None:intergenic
TGTGGTGATATTGATCGGAT+TGG 0.543477 4.1:+36050745 None:intergenic
GATCTCCTAGTATGCGGCGC+AGG 0.544212 4.1:-36051644 MS.gene41129:CDS
TCCCCAGTTAGTAAGCGAAT+AGG 0.546444 4.1:-36050258 MS.gene41129:CDS
TTGACAGAGGCTCACCTGCA+AGG 0.546463 4.1:-36052452 MS.gene41129:intron
TTGAAAACTGCAGGTGAATG+TGG 0.546556 4.1:+36052566 None:intergenic
ACTGGTGACTTCTGTTGACC+AGG 0.547027 4.1:+36049993 None:intergenic
TGACAGAGGCTCACCTGCAA+GGG 0.547216 4.1:-36052451 MS.gene41129:intron
CTGCGTCTTTGAACAGGAGA+GGG 0.548291 4.1:+36051960 None:intergenic
TAAGGTGAATTGAAAACTGC+AGG 0.548365 4.1:+36052557 None:intergenic
AGTCCTGTGCAGTCTTCTAT+GGG 0.549704 4.1:-36051351 MS.gene41129:CDS
ATCGAAAGCGGGAAGAGAGA+CGG 0.550323 4.1:-36049602 MS.gene41129:CDS
ATGGTCTGTTGGCTTCTTTG+GGG 0.552334 4.1:+36050520 None:intergenic
GTTCTCCTTCTGACTGGAGA+TGG 0.552568 4.1:+36051393 None:intergenic
GGTGATCTGCGTCTTCGCAC+AGG 0.555011 4.1:+36051762 None:intergenic
AGTCTTCTATGGGAAGAGTC+AGG 0.555275 4.1:-36051341 MS.gene41129:intron
ATAGAAGGGATGGAAAGGAT+AGG 0.555910 4.1:-36049761 MS.gene41129:CDS
CTGCGTCGTCGTACTGGAGA+GGG 0.556617 4.1:+36051882 None:intergenic
CTGAAAATGAAGAGTAAACC+AGG 0.557310 4.1:-36049549 MS.gene41129:CDS
CAGTGATAAATCTTCTGGCA+AGG 0.559732 4.1:-36050027 MS.gene41129:CDS
GGTGATCTACGTCGGTGCAT+TGG 0.560342 4.1:+36051708 None:intergenic
ATAGTAGAACTCCACGGCGC+AGG 0.561138 4.1:-36051536 MS.gene41129:CDS
CTGCGTTGTCGTACTGGAGA+AGG 0.562594 4.1:+36051822 None:intergenic
CTACGTCGGTGCATTGGAGA+AGG 0.562699 4.1:+36051714 None:intergenic
GAATGCATTCCACGTCGGAT+AGG 0.562702 4.1:+36052005 None:intergenic
TGCCTCAGAGGGATTTCAAG+TGG 0.565143 4.1:+36050581 None:intergenic
GAGTATATGCAGATCTCCAA+AGG 0.566273 4.1:-36052171 MS.gene41129:intron
AGGAGGAGAAGCATCGAAAG+CGG 0.568565 4.1:-36049614 MS.gene41129:CDS
ACTAGGAGATCTCTGTTGCA+GGG 0.573359 4.1:+36051656 None:intergenic
AGGTGAATATGGACGTAATG+AGG 0.574170 4.1:-36054388 MS.gene41129:CDS
GTAATGATGCAGAAAGTGAA+CGG 0.574593 4.1:-36053973 MS.gene41129:intron
TGAAAGGAATAAGAAAGGCC+AGG 0.574897 4.1:-36050145 MS.gene41129:CDS
CGTCGTCGTACTGGGGAAGG+TGG 0.575213 4.1:+36051855 None:intergenic
CTGGTCTTACTTCTTGCTTG+TGG 0.575834 4.1:+36050727 None:intergenic
CGATGAGGAAGCTGAACGAA+GGG 0.577929 4.1:-36049514 MS.gene41129:CDS
AGGATGGAAAACAAACTGAC+AGG 0.578708 4.1:-36053384 MS.gene41129:CDS
GTGCTTATTAACTTCATACA+TGG 0.580754 4.1:-36054317 MS.gene41129:CDS
GACCTTCGTCTAATAGGTGA+TGG 0.581463 4.1:+36051687 None:intergenic
AGTGGCAAGCATAGAAGGGA+TGG 0.582926 4.1:-36049771 MS.gene41129:CDS
TGGATTAGGCTGAAAGCGAT+AGG 0.583442 4.1:-36053695 MS.gene41129:intron
TCTTCGTCGTCGCACTGGAG+AGG 0.583498 4.1:+36051908 None:intergenic
ATGATTCTGAGTTAGAAGAC+AGG 0.586623 4.1:-36049683 MS.gene41129:CDS
GTAAAGATATCATGGAAGAG+AGG 0.588000 4.1:-36053635 MS.gene41129:CDS
ACAGAAGTCACCAGTGAACA+AGG 0.589806 4.1:-36049985 MS.gene41129:CDS
ACATGGTCTTCTGGAAGCGA+AGG 0.592482 4.1:-36054300 MS.gene41129:intron
AGCATTATGATAATAATGAA+AGG 0.592936 4.1:-36050161 MS.gene41129:CDS
GGAGATGGAGATACACGTGC+AGG 0.593789 4.1:+36051408 None:intergenic
CTACGTCGTCGTATAGGAGA+AGG 0.596511 4.1:+36051741 None:intergenic
GTCTCTGGGATGTCATGGCT+AGG 0.596624 4.1:+36050494 None:intergenic
GACATCCCAGAGACGAGTGA+AGG 0.597887 4.1:-36050485 MS.gene41129:CDS
GCAGATCTCCAAAGGGTCGA+GGG 0.599101 4.1:-36052163 MS.gene41129:intron
CACAAAGATCTCCTCATAGG+AGG 0.599164 4.1:-36052070 MS.gene41129:CDS
TCTGCGTCTTTGAACAGGAG+AGG 0.599370 4.1:+36051959 None:intergenic
TGAGTTAGAAGACAGGAAAG+AGG 0.599489 4.1:-36049676 MS.gene41129:CDS
TACAGACCGCAAAGGACTAG+AGG 0.599929 4.1:+36050837 None:intergenic
AGTGATAAATCTTCTGGCAA+GGG 0.600108 4.1:-36050026 MS.gene41129:CDS
GAGGAAGCTGAACGAAGGGA+TGG 0.600904 4.1:-36049510 MS.gene41129:CDS
GAACACCCTCTCCTGTTAGA+CGG 0.602336 4.1:-36051938 MS.gene41129:CDS
TAAGTCACAGAAGTTTGCAC+CGG 0.605355 4.1:-36054778 MS.gene41129:CDS
GAGAGCTTGACCTCCGTCCA+CGG 0.605834 4.1:+36051589 None:intergenic
GGAGAAGAAGAAGCTGCGAA+AGG 0.606850 4.1:-36049634 MS.gene41129:CDS
CAAGCATAGAAGGGATGGAA+AGG 0.610084 4.1:-36049766 MS.gene41129:CDS
ACAGGTGATCTATGCTGCAA+AGG 0.611103 4.1:+36051504 None:intergenic
CTAGGAGATCTCTGTTGCAG+GGG 0.611845 4.1:+36051657 None:intergenic
ACGATGAGGAAGCTGAACGA+AGG 0.612999 4.1:-36049515 MS.gene41129:CDS
ATCTGCCAAATTTCATCACG+AGG 0.613155 4.1:-36050232 MS.gene41129:CDS
GAACTCCATTCATCATGAGA+AGG 0.615832 4.1:+36051438 None:intergenic
AGTATATGCAGATCTCCAAA+GGG 0.617919 4.1:-36052170 MS.gene41129:intron
ATCATACCTTCGCATTATGG+GGG 0.620361 4.1:+36051557 None:intergenic
TATCTCCATCTCCAGTCAGA+AGG 0.621299 4.1:-36051398 MS.gene41129:CDS
GATAAATCTTCTGGCAAGGG+AGG 0.621601 4.1:-36050023 MS.gene41129:CDS
GGATAACAAGTGAAATTCAG+AGG 0.624286 4.1:-36053674 MS.gene41129:CDS
CGATCTCCGTCTAACAGGAG+AGG 0.624447 4.1:+36051932 None:intergenic
GGAAAACAAACTGACAGGAA+TGG 0.624597 4.1:-36053379 MS.gene41129:CDS
TCTGCGTCGTCGTACTGGAG+AGG 0.626382 4.1:+36051881 None:intergenic
TCAGGGCACTACATTCAGGA+TGG 0.627377 4.1:-36053400 MS.gene41129:CDS
TTAGCATCCAAGAACTGCTG+AGG 0.629191 4.1:+36053841 None:intergenic
GGACGGAGGATTAGATGCGA+AGG 0.629390 4.1:-36053464 MS.gene41129:CDS
AGAAAGTGGCAAGCATAGAA+GGG 0.631893 4.1:-36049775 MS.gene41129:CDS
GAACTGCTGAGGAACACCAC+TGG 0.634456 4.1:+36053852 None:intergenic
ACAGGAATGGTGTTAGAGCA+AGG 0.635476 4.1:-36053366 MS.gene41129:CDS
CGCCGTCACAACATGTCAGG+CGG 0.637769 4.1:-36055175 None:intergenic
ACAGGAAAGAGGCCAAGAGG+AGG 0.638857 4.1:-36049665 MS.gene41129:CDS
AAGACAGGAAAGAGGCCAAG+AGG 0.640404 4.1:-36049668 MS.gene41129:CDS
GATCAGCACCACAAATCAGA+AGG 0.640722 4.1:-36049864 MS.gene41129:CDS
GATCTCCGTCTAACAGGAGA+GGG 0.642163 4.1:+36051933 None:intergenic
CATCTGCGGATCAAGACACT+CGG 0.642784 4.1:-36054827 MS.gene41129:CDS
TCTGCGTCTTCGCACAGGAG+AGG 0.644756 4.1:+36051767 None:intergenic
GATTGGAGACTTATCTGGTG+TGG 0.644922 4.1:+36050762 None:intergenic
GAATACCACTAAGCCGTGGA+CGG 0.647906 4.1:-36051602 MS.gene41129:CDS
CGTTGTCGTACTGGAGAAGG+TGG 0.649650 4.1:+36051825 None:intergenic
AGGCTATATTTCAGACGATG+AGG 0.652893 4.1:-36049529 MS.gene41129:CDS
TACCACTAAGCCGTGGACGG+AGG 0.653994 4.1:-36051599 MS.gene41129:CDS
TGATCTGCGTCGTCGTACTG+GGG 0.659410 4.1:+36051848 None:intergenic
CTTAGTGGTATTCGACGCAT+CGG 0.660302 4.1:+36051612 None:intergenic
GCAGATCACCTTATCCTGCA+CGG 0.663082 4.1:-36051803 MS.gene41129:CDS
CTTCCCATAGAAGACTGCAC+AGG 0.663283 4.1:+36051348 None:intergenic
AACAGAGATCTCCTAGTATG+CGG 0.664203 4.1:-36051650 MS.gene41129:CDS
GGATACAGCGGTCTTCACGA+CGG 0.664510 4.1:-36052121 MS.gene41129:CDS
ACCTATTCGCTTACTAACTG+GGG 0.667629 4.1:+36050257 None:intergenic
AGAAGGAGACCTCTTAGGGG+AGG 0.669972 4.1:+36051455 None:intergenic
ACAGACCGCAAAGGACTAGA+GGG 0.670912 4.1:+36050838 None:intergenic
ATGGAGAATGCATTCCACGT+CGG 0.671570 4.1:+36052000 None:intergenic
GGAGATGGAGACCTGCGCCG+TGG 0.671901 4.1:+36051525 None:intergenic
GATGCAGAAAGTGAACGGGA+AGG 0.679680 4.1:-36053968 MS.gene41129:intron
CACCATCACCTATTAGACGA+AGG 0.685718 4.1:-36051689 MS.gene41129:CDS
TCTGCAGCATAAGAATCGCG+AGG 0.686337 4.1:+36049942 None:intergenic
TAGGTGATGGTGATCTACGT+CGG 0.690454 4.1:+36051700 None:intergenic
CGTCGAATACCACTAAGCCG+TGG 0.697725 4.1:-36051606 MS.gene41129:CDS
TTGGATGTAGGGTACATCTG+CGG 0.702200 4.1:-36054841 MS.gene41129:intron
ATGAGAAGGAGACCTCTTAG+GGG 0.707295 4.1:+36051452 None:intergenic
TTTGTAGGTGGACATGACAA+AGG 0.709049 4.1:-36054408 MS.gene41129:intron
CTCAAACTACTGTAGGACGG+AGG 0.719978 4.1:-36053478 MS.gene41129:intron
TCATCTTCTCCTATCCGACG+TGG 0.725643 4.1:-36052014 MS.gene41129:CDS
GTCCACTTGAAATCCCTCTG+AGG 0.727653 4.1:-36050583 MS.gene41129:CDS
TCTCTCTGTACAGACCGCAA+AGG 0.728007 4.1:+36050829 None:intergenic
TTTCTTCTGAAAGGATACAG+CGG 0.730863 4.1:-36052133 MS.gene41129:CDS
GGTATGATAGTAGAACTCCA+CGG 0.784949 4.1:-36051542 MS.gene41129:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTACTCATTAATAA+AGG + chr4.1:36052329-36052348 None:intergenic 10.0%
!! ATATACAAAAATTTAAAAAC+AGG + chr4.1:36049649-36049668 None:intergenic 10.0%
!! AATGAAATAGAAAAAAACAT+CGG + chr4.1:36051271-36051290 None:intergenic 15.0%
!! ATATAAAATGGTAATATGAT+TGG - chr4.1:36054445-36054464 MS.gene41129:intron 15.0%
!! TACAAAATATCAAAAAACAA+TGG + chr4.1:36051781-36051800 None:intergenic 15.0%
!!! AAATATAACATGTTGAATTT+TGG - chr4.1:36049707-36049726 MS.gene41129:CDS 15.0%
!!! AACAAACCTTATTTAAAAAA+TGG + chr4.1:36053630-36053649 None:intergenic 15.0%
!!! ACAAACCTTATTTAAAAAAT+GGG + chr4.1:36053629-36053648 None:intergenic 15.0%
!!! ATTCGTTGATTTTTTTTATA+GGG - chr4.1:36049853-36049872 MS.gene41129:CDS 15.0%
!!! ATTTTATTCAATTTTGAAGT+AGG - chr4.1:36053361-36053380 MS.gene41129:CDS 15.0%
!!! TAGTTTATGCATATTTATTT+TGG - chr4.1:36053945-36053964 MS.gene41129:CDS 15.0%
!!! TTATTGTTTTTGAACTATTT+TGG - chr4.1:36050294-36050313 MS.gene41129:CDS 15.0%
!!! TTGCACATTTAATTTTTATT+TGG - chr4.1:36052347-36052366 MS.gene41129:intron 15.0%
!!! TTTCTATTTCATTTTCTTAT+TGG - chr4.1:36051278-36051297 MS.gene41129:intron 15.0%
!!! TTTTTTGATATTTTGTATGT+TGG - chr4.1:36051784-36051803 MS.gene41129:CDS 15.0%
!! AAGCAAATGAATAATTGAAA+TGG + chr4.1:36049456-36049475 None:intergenic 20.0%
!! AATAACCAGAATTACTATTA+TGG - chr4.1:36053394-36053413 MS.gene41129:CDS 20.0%
!! AATAATGAAAGGAATAAGAA+AGG - chr4.1:36054417-36054436 MS.gene41129:intron 20.0%
!! AGCATTATGATAATAATGAA+AGG - chr4.1:36054406-36054425 MS.gene41129:intron 20.0%
!! ATGATTAAAAAAGAAGGAAT+CGG + chr4.1:36051242-36051261 None:intergenic 20.0%
!! CACATAATGATTAAAAAAGA+AGG + chr4.1:36051248-36051267 None:intergenic 20.0%
!! GTAAAAAACTTTATTCAGAA+AGG + chr4.1:36050846-36050865 None:intergenic 20.0%
!! TATGCATACATAATATATAC+AGG - chr4.1:36051445-36051464 MS.gene41129:CDS 20.0%
!!! AAACTCTATTATTTTGTTGT+TGG - chr4.1:36051857-36051876 MS.gene41129:CDS 20.0%
!!! AACTCTATTATTTTGTTGTT+GGG - chr4.1:36051858-36051877 MS.gene41129:CDS 20.0%
!!! AAGTTTGTTTGATTTTTCTT+TGG - chr4.1:36053278-36053297 MS.gene41129:intron 20.0%
!!! CAAATGTAGAAACTTATTTT+TGG - chr4.1:36053512-36053531 MS.gene41129:intron 20.0%
!!! GATTCGTTGATTTTTTTTAT+AGG - chr4.1:36049852-36049871 MS.gene41129:CDS 20.0%
!!! TCTACAAAATTTGTTTTTGT+TGG + chr4.1:36051586-36051605 None:intergenic 20.0%
!!! TTAGTTATGCATATTTTTGT+CGG + chr4.1:36051516-36051535 None:intergenic 20.0%
!!! TTTGAACTATTTTGGTTATA+CGG - chr4.1:36050302-36050321 MS.gene41129:CDS 20.0%
!!! TTTGCAGACTAATTTTTTAA+GGG - chr4.1:36053450-36053469 MS.gene41129:CDS 20.0%
!!! TTTTGCAGACTAATTTTTTA+AGG - chr4.1:36053449-36053468 MS.gene41129:CDS 20.0%
! AAAATTGAAAAACTGAACAG+AGG + chr4.1:36051827-36051846 None:intergenic 25.0%
! AACAAAAAAAACTGATGACA+AGG - chr4.1:36054648-36054667 MS.gene41129:intron 25.0%
! AAGAAAATTTGTGATATCTG+TGG - chr4.1:36053655-36053674 MS.gene41129:CDS 25.0%
! AATACAAATTACTGGATTCA+TGG - chr4.1:36050629-36050648 MS.gene41129:intron 25.0%
! AATTGAAATGGTGAATTCAA+TGG + chr4.1:36049444-36049463 None:intergenic 25.0%
! ACTCATTAATAAAGGCTAAA+AGG + chr4.1:36052321-36052340 None:intergenic 25.0%
! ATCTATGATAGTTCATTTAG+AGG + chr4.1:36050516-36050535 None:intergenic 25.0%
! ATTCAAGAACTCATTTAACA+GGG + chr4.1:36051935-36051954 None:intergenic 25.0%
! CAAGGTAAAAAATAAAAGCA+TGG + chr4.1:36050561-36050580 None:intergenic 25.0%
! CTCATTAATAAAGGCTAAAA+GGG + chr4.1:36052320-36052339 None:intergenic 25.0%
! GAGATTCAAATACAAATTAC+TGG - chr4.1:36050621-36050640 MS.gene41129:intron 25.0%
! TAATAGTTAATGCAAAGCAT+TGG - chr4.1:36051704-36051723 MS.gene41129:CDS 25.0%
! TACTGTATGCTATGAAATTA+GGG - chr4.1:36049546-36049565 MS.gene41129:CDS 25.0%
! TAGAACCATAATAGTAATTC+TGG + chr4.1:36053402-36053421 None:intergenic 25.0%
! TCATTAATAAAGGCTAAAAG+GGG + chr4.1:36052319-36052338 None:intergenic 25.0%
! TTAAAAAATGGGTCATGTTA+AGG + chr4.1:36053618-36053637 None:intergenic 25.0%
! TTTCAATCCAATATACAAGA+TGG + chr4.1:36052069-36052088 None:intergenic 25.0%
!! AAAAAAAGTGCAAGGATAAA+AGG + chr4.1:36050820-36050839 None:intergenic 25.0%
!! AATAGTTAATGCAAAGCATT+GGG - chr4.1:36051705-36051724 MS.gene41129:CDS 25.0%
!! ACATTTTCCATCTTGTATAT+TGG - chr4.1:36052059-36052078 MS.gene41129:CDS 25.0%
!! CATATTACCATTTTATATCC+TGG + chr4.1:36054443-36054462 None:intergenic 25.0%
!! CGTATTTGTTGAAATCAATA+TGG - chr4.1:36050432-36050451 MS.gene41129:intron 25.0%
!! TGATTTTATAAAGTGAGACA+TGG - chr4.1:36051376-36051395 MS.gene41129:CDS 25.0%
!! TTAAAAGAACCTTCTTTTTC+AGG + chr4.1:36050764-36050783 None:intergenic 25.0%
!!! AAATGTGTTAAGAAGTGTTA+TGG + chr4.1:36052045-36052064 None:intergenic 25.0%
!!! ATAAAGTTTTTTACTGTCGA+TGG - chr4.1:36050852-36050871 MS.gene41129:CDS 25.0%
!!! ATTAGCTTTTACTCTCTTAT+AGG - chr4.1:36051966-36051985 MS.gene41129:CDS 25.0%
!!! ATTTTTTACCTTGCAACATT+CGG - chr4.1:36050568-36050587 MS.gene41129:CDS 25.0%
!!! CAACTTGTTATAGTGATTTT+TGG - chr4.1:36049623-36049642 MS.gene41129:CDS 25.0%
!!! CATGACCCATTTTTTAAATA+AGG - chr4.1:36053621-36053640 MS.gene41129:intron 25.0%
!!! CCATTTTTCCTAATTATTAC+CGG - chr4.1:36049944-36049963 MS.gene41129:CDS 25.0%
!!! TAGTTATGCATATTTTTGTC+GGG + chr4.1:36051515-36051534 None:intergenic 25.0%
!!! TTTATCCTTGCACTTTTTTT+TGG - chr4.1:36050820-36050839 MS.gene41129:CDS 25.0%
!!! TTTTCGGATGAATTTGATTT+AGG + chr4.1:36054276-36054295 None:intergenic 25.0%
AAAAATAAAGATCCGTTAGC+AGG + chr4.1:36052288-36052307 None:intergenic 30.0%
AATTCAGAGGAAGAAAGATA+AGG - chr4.1:36050906-36050925 MS.gene41129:intron 30.0%
AGTCTTGATTTACCATTCAT+TGG - chr4.1:36050783-36050802 MS.gene41129:CDS 30.0%
ATCCAATTCTATAGTTGTCA+AGG + chr4.1:36051680-36051699 None:intergenic 30.0%
ATTAATAAAGGCTAAAAGGG+GGG + chr4.1:36052317-36052336 None:intergenic 30.0%
ATTCAGTAGCATAATCTGAT+GGG - chr4.1:36052243-36052262 MS.gene41129:intron 30.0%
CATTAATAAAGGCTAAAAGG+GGG + chr4.1:36052318-36052337 None:intergenic 30.0%
CCGGTAATAATTAGGAAAAA+TGG + chr4.1:36049947-36049966 None:intergenic 30.0%
GATTCAAGAACTCATTTAAC+AGG + chr4.1:36051936-36051955 None:intergenic 30.0%
GGAATTCGAAAATGATTTAC+TGG + chr4.1:36052145-36052164 None:intergenic 30.0%
GTACTGTATGCTATGAAATT+AGG - chr4.1:36049545-36049564 MS.gene41129:CDS 30.0%
GTCTTGATTTACCATTCATT+GGG - chr4.1:36050784-36050803 MS.gene41129:CDS 30.0%
GTGCTTATTAACTTCATACA+TGG - chr4.1:36050250-36050269 MS.gene41129:CDS 30.0%
TAAGGAGAGTAAAGATATCA+TGG - chr4.1:36050924-36050943 MS.gene41129:intron 30.0%
TAATACTATTTGTTCGTTGC+TGG - chr4.1:36050968-36050987 MS.gene41129:intron 30.0%
TCACATCAAAAAAATAGCAG+AGG + chr4.1:36050121-36050140 None:intergenic 30.0%
TCTGTACAGAGAGATAAAAA+TGG - chr4.1:36053747-36053766 MS.gene41129:intron 30.0%
TTCATAACACAGTAGTTTGA+GGG + chr4.1:36051481-36051500 None:intergenic 30.0%
TTCCAAATTTCAAAAGCAGT+TGG + chr4.1:36050034-36050053 None:intergenic 30.0%
TTCCTTGACAACTATAGAAT+TGG - chr4.1:36051675-36051694 MS.gene41129:CDS 30.0%
TTCTAGGTTTGAATACGAAT+TGG - chr4.1:36054123-36054142 MS.gene41129:intron 30.0%
TTGAATGTAATCACGTTTGT+CGG + chr4.1:36049919-36049938 None:intergenic 30.0%
! ACATGTTGAATTTTGGATGT+AGG - chr4.1:36049714-36049733 MS.gene41129:CDS 30.0%
! ACTCATTTAACAGGGTTTTT+AGG + chr4.1:36051927-36051946 None:intergenic 30.0%
! CAGAAGAAGCATATTATTCT+AGG - chr4.1:36054107-36054126 MS.gene41129:intron 30.0%
! CAGTTTTCAATTCACCTTAT+CGG - chr4.1:36052014-36052033 MS.gene41129:CDS 30.0%
! CATGTTGAATTTTGGATGTA+GGG - chr4.1:36049715-36049734 MS.gene41129:CDS 30.0%
! CTTGAAAAATGATTTGTAGG+TGG - chr4.1:36050147-36050166 MS.gene41129:CDS 30.0%
! GTGCTTGAAAAATGATTTGT+AGG - chr4.1:36050144-36050163 MS.gene41129:CDS 30.0%
! TTGCTGGATTACGTTTTATA+GGG - chr4.1:36050984-36051003 MS.gene41129:intron 30.0%
! TTGTATGTTGGATTAGATGT+TGG - chr4.1:36051796-36051815 MS.gene41129:CDS 30.0%
! TTTTATAAAGTGAGACATGG+TGG - chr4.1:36051379-36051398 MS.gene41129:CDS 30.0%
!! GTCATTTTGAACTAATGTCA+AGG - chr4.1:36052374-36052393 MS.gene41129:intron 30.0%
!! TTTCTTATTGGTTTCACAGT+GGG - chr4.1:36051290-36051309 MS.gene41129:intron 30.0%
!! TTTTGGTTATACGGTAATCT+TGG - chr4.1:36050311-36050330 MS.gene41129:intron 30.0%
!!! GTATTTTGATACCCAATGAA+TGG + chr4.1:36050798-36050817 None:intergenic 30.0%
!!! TTACCTTCTATTTTTACTGC+TGG + chr4.1:36053862-36053881 None:intergenic 30.0%
!!! TTCCAACTGCTTTTGAAATT+TGG - chr4.1:36050029-36050048 MS.gene41129:intron 30.0%
!!! TTTTCTTATTGGTTTCACAG+TGG - chr4.1:36051289-36051308 MS.gene41129:intron 30.0%
!!! TTTTTTACTGTCGATGGATT+AGG - chr4.1:36050858-36050877 MS.gene41129:CDS 30.0%
AAAATTTCACAGCTCCAAAC+AGG + chr4.1:36053433-36053452 None:intergenic 35.0%
AACCTATTCGCTTACTAACT+GGG + chr4.1:36054314-36054333 None:intergenic 35.0%
AAGAGTTGTATGAGAAGTCA+AGG + chr4.1:36053889-36053908 None:intergenic 35.0%
AAGCTCTTTCATGAACTTAC+CGG + chr4.1:36050664-36050683 None:intergenic 35.0%
ACACTGTACATCTCTGATAA+TGG - chr4.1:36054504-36054523 MS.gene41129:intron 35.0%
ACGGTAATCTTGGAGATTAA+TGG - chr4.1:36050321-36050340 MS.gene41129:intron 35.0%
ACTATCATACCTTCGCATTA+TGG + chr4.1:36053016-36053035 None:intergenic 35.0%
ACTTCTAAACATGTGCCTTA+AGG + chr4.1:36053492-36053511 None:intergenic 35.0%
AGAAAGGCCAGGATATAAAA+TGG - chr4.1:36054433-36054452 MS.gene41129:intron 35.0%
AGAAGAACTCCTGAAAAAGA+AGG - chr4.1:36050752-36050771 MS.gene41129:CDS 35.0%
AGAAGATTTATCACTGCCAA+AGG + chr4.1:36054536-36054555 None:intergenic 35.0%
AGACCAGCAGTAAAAATAGA+AGG - chr4.1:36053856-36053875 MS.gene41129:CDS 35.0%
AGAGAGAAATTGACCATTGA+AGG - chr4.1:36054013-36054032 MS.gene41129:intron 35.0%
AGTAAGCGTATATGCAAAAG+CGG + chr4.1:36052184-36052203 None:intergenic 35.0%
AGTATATGCAGATCTCCAAA+GGG - chr4.1:36052397-36052416 MS.gene41129:intron 35.0%
AGTGATAAATCTTCTGGCAA+GGG - chr4.1:36054541-36054560 MS.gene41129:intron 35.0%
ATGATTCTGAGTTAGAAGAC+AGG - chr4.1:36054884-36054903 MS.gene41129:intron 35.0%
ATGCATAAACTAACTACTGC+AGG + chr4.1:36053937-36053956 None:intergenic 35.0%
ATGGTTCTTCATCATCACTT+TGG + chr4.1:36055086-36055105 None:intergenic 35.0%
ATGTTCTCAGCTTCTTAAAG+TGG - chr4.1:36051339-36051358 MS.gene41129:intron 35.0%
ATTACAAACCGAATGTTGCA+AGG + chr4.1:36050579-36050598 None:intergenic 35.0%
CATATACACCATGATGTTTG+AGG + chr4.1:36050057-36050076 None:intergenic 35.0%
CATCAGATTATGCTACTGAA+TGG + chr4.1:36052244-36052263 None:intergenic 35.0%
CATTCAGTAGCATAATCTGA+TGG - chr4.1:36052242-36052261 MS.gene41129:intron 35.0%
CTATCATACCTTCGCATTAT+GGG + chr4.1:36053015-36053034 None:intergenic 35.0%
CTGAAAATGAAGAGTAAACC+AGG - chr4.1:36055018-36055037 MS.gene41129:intron 35.0%
CTGTATCCTTTCAGAAGAAA+TGG + chr4.1:36052434-36052453 None:intergenic 35.0%
CTTCATAACACAGTAGTTTG+AGG + chr4.1:36051482-36051501 None:intergenic 35.0%
CTTCTAAACATGTGCCTTAA+GGG + chr4.1:36053491-36053510 None:intergenic 35.0%
GAAAAAAACTCCTTGTTCAC+TGG + chr4.1:36054595-36054614 None:intergenic 35.0%
GATAAAAATGGCAAAGCTTC+AGG - chr4.1:36053759-36053778 MS.gene41129:intron 35.0%
GATCTTCTCCTTGAATAAGA+TGG + chr4.1:36052523-36052542 None:intergenic 35.0%
GGATAACAAGTGAAATTCAG+AGG - chr4.1:36050893-36050912 MS.gene41129:intron 35.0%
GGATTCATGGAAAAAAACAC+CGG - chr4.1:36050642-36050661 MS.gene41129:intron 35.0%
GTAAAGATATCATGGAAGAG+AGG - chr4.1:36050932-36050951 MS.gene41129:intron 35.0%
GTAAGTTCATGAAAGAGCTT+TGG - chr4.1:36050664-36050683 MS.gene41129:intron 35.0%
GTAATGATGCAGAAAGTGAA+CGG - chr4.1:36050594-36050613 MS.gene41129:intron 35.0%
TAACTTCATACATGGTCTTC+TGG - chr4.1:36050258-36050277 MS.gene41129:CDS 35.0%
TAAGGTGAATTGAAAACTGC+AGG + chr4.1:36052013-36052032 None:intergenic 35.0%
TAATGATGCAGAAAGTGAAC+GGG - chr4.1:36050595-36050614 MS.gene41129:intron 35.0%
TACGCTTACTTAGTTTCGTT+TGG - chr4.1:36052194-36052213 MS.gene41129:intron 35.0%
TATCATACCTTCGCATTATG+GGG + chr4.1:36053014-36053033 None:intergenic 35.0%
TGTGCATTCAATGTCTTGAA+AGG - chr4.1:36053539-36053558 MS.gene41129:intron 35.0%
TTGCTTGTGGTGATATTGAT+CGG + chr4.1:36053830-36053849 None:intergenic 35.0%
TTTGGCAGTGATAAATCTTC+TGG - chr4.1:36054535-36054554 MS.gene41129:intron 35.0%
! AAAGGCCAAAAAAAAGTGCA+AGG + chr4.1:36050828-36050847 None:intergenic 35.0%
! ACAACTCTTTTATCTGCTCA+TGG - chr4.1:36053900-36053919 MS.gene41129:CDS 35.0%
! AGCTAGCTTCTGCAATTATT+TGG - chr4.1:36051051-36051070 MS.gene41129:intron 35.0%
! AGGATAGGAGAAAGCATAAA+AGG - chr4.1:36054821-36054840 MS.gene41129:CDS 35.0%
! ATTTGGAACCTCAAACATCA+TGG - chr4.1:36050046-36050065 MS.gene41129:intron 35.0%
! GCTAGCTTCTGCAATTATTT+GGG - chr4.1:36051052-36051071 MS.gene41129:intron 35.0%
! GTGTCTGCTATCAAAAGTAT+CGG + chr4.1:36049897-36049916 None:intergenic 35.0%
! GTTGCTGGATTACGTTTTAT+AGG - chr4.1:36050983-36051002 MS.gene41129:intron 35.0%
! GTTTTATAGGGCTGAGATTT+TGG - chr4.1:36050996-36051015 MS.gene41129:intron 35.0%
! TTTCTTCTGAAAGGATACAG+CGG - chr4.1:36052434-36052453 MS.gene41129:CDS 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr4.1:36053474-36053493 MS.gene41129:intron 35.0%
!! AGGATGAGTTTTATCCTGAA+AGG - chr4.1:36054355-36054374 MS.gene41129:CDS 35.0%
!! CTGATAATGGTAAACTCCTT+TGG - chr4.1:36054517-36054536 MS.gene41129:intron 35.0%
!! GATTCTGTTTCTGAAGAAAG+TGG - chr4.1:36054778-36054797 MS.gene41129:CDS 35.0%
!! GGAGTGTCTTGATTTCTTTT+CGG + chr4.1:36054292-36054311 None:intergenic 35.0%
!! GGATGAGTTTTATCCTGAAA+GGG - chr4.1:36054356-36054375 MS.gene41129:CDS 35.0%
!! GTATTTGCTATCTTTGACAG+AGG - chr4.1:36052102-36052121 MS.gene41129:CDS 35.0%
!! TGTGTTAAGAAGTGTTATGG+TGG + chr4.1:36052042-36052061 None:intergenic 35.0%
!!! GTCACTTTTCTAGTAATCCA+AGG + chr4.1:36050205-36050224 None:intergenic 35.0%
!!! GTGAACAAGGAGTTTTTTTC+TGG - chr4.1:36054595-36054614 MS.gene41129:intron 35.0%
AACAGAGATCTCCTAGTATG+CGG - chr4.1:36052917-36052936 MS.gene41129:intron 40.0%
AAGAAAGTGGCAAGCATAGA+AGG - chr4.1:36054791-36054810 MS.gene41129:CDS 40.0%
AAGCGGACCTTGAATAACTT+CGG + chr4.1:36052167-36052186 None:intergenic 40.0%
ACCTATTCGCTTACTAACTG+GGG + chr4.1:36054313-36054332 None:intergenic 40.0%
AGAAAGTGGCAAGCATAGAA+GGG - chr4.1:36054792-36054811 MS.gene41129:CDS 40.0%
AGCTCAATCTCAAGCTTCTT+TGG + chr4.1:36055114-36055133 None:intergenic 40.0%
AGGATGGAAAACAAACTGAC+AGG - chr4.1:36051183-36051202 MS.gene41129:intron 40.0%
AGGCTATATTTCAGACGATG+AGG - chr4.1:36055038-36055057 MS.gene41129:intron 40.0%
AGGTGAATATGGACGTAATG+AGG - chr4.1:36050179-36050198 MS.gene41129:CDS 40.0%
ATAAACTAACTACTGCAGGC+AGG + chr4.1:36053933-36053952 None:intergenic 40.0%
ATAGAAGGGATGGAAAGGAT+AGG - chr4.1:36054806-36054825 MS.gene41129:CDS 40.0%
ATAGGAGGCCATCTTATTCA+AGG - chr4.1:36052512-36052531 MS.gene41129:intron 40.0%
ATCATACCTTCGCATTATGG+GGG + chr4.1:36053013-36053032 None:intergenic 40.0%
ATCTGCCAAATTTCATCACG+AGG - chr4.1:36054335-36054354 MS.gene41129:CDS 40.0%
CAGTGATAAATCTTCTGGCA+AGG - chr4.1:36054540-36054559 MS.gene41129:intron 40.0%
CATGCTCTTCTTTGCTTTGA+GGG + chr4.1:36055157-36055176 None:intergenic 40.0%
CCCACTAGAAAGACTTCATA+CGG + chr4.1:36051623-36051642 None:intergenic 40.0%
CCTTTACCTCAAACTACTGT+AGG - chr4.1:36051082-36051101 MS.gene41129:intron 40.0%
CGAATTCCCGAAGTTATTCA+AGG - chr4.1:36052157-36052176 MS.gene41129:CDS 40.0%
CGTTGACACCGGTAATAATT+AGG + chr4.1:36049955-36049974 None:intergenic 40.0%
CTCATCCTCGTGATGAAATT+TGG + chr4.1:36054343-36054362 None:intergenic 40.0%
GAACCTATTCGCTTACTAAC+TGG + chr4.1:36054315-36054334 None:intergenic 40.0%
GAACTCCATTCATCATGAGA+AGG + chr4.1:36053132-36053151 None:intergenic 40.0%
GAGCAAGGAACAGGTAAAAT+CGG - chr4.1:36051216-36051235 MS.gene41129:intron 40.0%
GAGCGCAATGAAAACACAAA+TGG + chr4.1:36051031-36051050 None:intergenic 40.0%
GAGTATATGCAGATCTCCAA+AGG - chr4.1:36052396-36052415 MS.gene41129:intron 40.0%
GGAAAACAAACTGACAGGAA+TGG - chr4.1:36051188-36051207 MS.gene41129:intron 40.0%
GGACATGACAAAGGTGAATA+TGG - chr4.1:36050168-36050187 MS.gene41129:CDS 40.0%
GGTATGATAGTAGAACTCCA+CGG - chr4.1:36053025-36053044 MS.gene41129:intron 40.0%
GTTCTACTCCATATCCTGTT+TGG - chr4.1:36053416-36053435 MS.gene41129:CDS 40.0%
TAAGTCACAGAAGTTTGCAC+CGG - chr4.1:36049789-36049808 MS.gene41129:CDS 40.0%
TAATATATACAGGCCCTCAC+TGG - chr4.1:36051455-36051474 MS.gene41129:CDS 40.0%
TACCTCAAACTACTGTAGGA+CGG - chr4.1:36051086-36051105 MS.gene41129:intron 40.0%
TCAAGCTTCTTTGGATCGTA+TGG + chr4.1:36055105-36055124 None:intergenic 40.0%
TCATGCTCTTCTTTGCTTTG+AGG + chr4.1:36055158-36055177 None:intergenic 40.0%
TCTCAGCTTCTTAAAGTGGA+TGG - chr4.1:36051343-36051362 MS.gene41129:CDS 40.0%
TGAAAGGAATAAGAAAGGCC+AGG - chr4.1:36054422-36054441 MS.gene41129:intron 40.0%
TGAGATTGAGCTGCGTAATA+AGG - chr4.1:36055122-36055141 MS.gene41129:intron 40.0%
TGAGTTAGAAGACAGGAAAG+AGG - chr4.1:36054891-36054910 MS.gene41129:intron 40.0%
TGTGGTGATATTGATCGGAT+TGG + chr4.1:36053825-36053844 None:intergenic 40.0%
TGTTCAACTTTGCCTGCTAA+CGG - chr4.1:36052273-36052292 MS.gene41129:intron 40.0%
TTGAAAACTGCAGGTGAATG+TGG + chr4.1:36052004-36052023 None:intergenic 40.0%
TTTGTAGGTGGACATGACAA+AGG - chr4.1:36050159-36050178 MS.gene41129:CDS 40.0%
! CCGTATGAAGTCTTTCTAGT+GGG - chr4.1:36051620-36051639 MS.gene41129:CDS 40.0%
! CCTACAGTAGTTTGAGGTAA+AGG + chr4.1:36051085-36051104 None:intergenic 40.0%
! GAAGTCTTTCTAGTGGGATA+AGG - chr4.1:36051626-36051645 MS.gene41129:CDS 40.0%
! TCATCGTCTGAAATATAGCC+TGG + chr4.1:36055039-36055058 None:intergenic 40.0%
!! AGATCCAACTTTGAAGTCCA+GGG - chr4.1:36051142-36051161 MS.gene41129:intron 40.0%
!! CTAGAGGGTTGATAAACTTC+CGG + chr4.1:36053717-36053736 None:intergenic 40.0%
!! GAAGGCACTCAAGATTTAGT+TGG - chr4.1:36054721-36054740 MS.gene41129:intron 40.0%
!! TATGGTCTGTTGGCTTCTTT+GGG + chr4.1:36054051-36054070 None:intergenic 40.0%
!! TTATGGTCTGTTGGCTTCTT+TGG + chr4.1:36054052-36054071 None:intergenic 40.0%
AAGACTGCACAGGACTTCTT+TGG + chr4.1:36053212-36053231 None:intergenic 45.0%
AAGACTTCATACGGCGACTT+AGG + chr4.1:36051614-36051633 None:intergenic 45.0%
AAGTCCTGTGCAGTCTTCTA+TGG - chr4.1:36053215-36053234 MS.gene41129:intron 45.0%
AATAAAGGCTAAAAGGGGGG+CGG + chr4.1:36052314-36052333 None:intergenic 45.0%
ACAGAAGTCACCAGTGAACA+AGG - chr4.1:36054582-36054601 MS.gene41129:intron 45.0%
ACAGAAGTTTGCACCGGAAT+TGG - chr4.1:36049795-36049814 MS.gene41129:CDS 45.0%
ACAGGTGATCTATGCTGCAA+AGG + chr4.1:36053066-36053085 None:intergenic 45.0%
ACTAGGAGATCTCTGTTGCA+GGG + chr4.1:36052914-36052933 None:intergenic 45.0%
AGAAAAGTGACCGAGCTTCT+TGG - chr4.1:36050214-36050233 MS.gene41129:CDS 45.0%
AGCGGACCTTGAATAACTTC+GGG + chr4.1:36052166-36052185 None:intergenic 45.0%
AGTCCTGTGCAGTCTTCTAT+GGG - chr4.1:36053216-36053235 MS.gene41129:intron 45.0%
AGTCTTCTATGGGAAGAGTC+AGG - chr4.1:36053226-36053245 MS.gene41129:intron 45.0%
AGTGCACAGAAAAATGCCAG+TGG - chr4.1:36050699-36050718 MS.gene41129:intron 45.0%
ATATGGACGTAATGAGGCCT+TGG - chr4.1:36050185-36050204 MS.gene41129:CDS 45.0%
ATCAACCCTCTAGTCCTTTG+CGG - chr4.1:36053724-36053743 MS.gene41129:intron 45.0%
ATGAGAAGGAGACCTCTTAG+GGG + chr4.1:36053118-36053137 None:intergenic 45.0%
ATGGAGAATGCATTCCACGT+CGG + chr4.1:36052570-36052589 None:intergenic 45.0%
CAAACCAGATGCTCCAATTC+CGG + chr4.1:36049811-36049830 None:intergenic 45.0%
CAAGCATAGAAGGGATGGAA+AGG - chr4.1:36054801-36054820 MS.gene41129:CDS 45.0%
CACAAAGATCTCCTCATAGG+AGG - chr4.1:36052497-36052516 MS.gene41129:intron 45.0%
CACCACAAAGATCTCCTCAT+AGG - chr4.1:36052494-36052513 MS.gene41129:intron 45.0%
CACCATCACCTATTAGACGA+AGG - chr4.1:36052878-36052897 MS.gene41129:intron 45.0%
CAGCATAGATCACCTGTTTC+GGG - chr4.1:36053069-36053088 MS.gene41129:intron 45.0%
CATGAGAAGGAGACCTCTTA+GGG + chr4.1:36053119-36053138 None:intergenic 45.0%
CTCCTATGAGGAGATCTTTG+TGG + chr4.1:36052499-36052518 None:intergenic 45.0%
CTTAGTGGTATTCGACGCAT+CGG + chr4.1:36052958-36052977 None:intergenic 45.0%
GAAAAGTGACCGAGCTTCTT+GGG - chr4.1:36050215-36050234 MS.gene41129:CDS 45.0%
GAATAAGATGGCCTCCTATG+AGG + chr4.1:36052511-36052530 None:intergenic 45.0%
GAATCCCTGGACTTCAAAGT+TGG + chr4.1:36051149-36051168 None:intergenic 45.0%
GACCTTCGTCTAATAGGTGA+TGG + chr4.1:36052883-36052902 None:intergenic 45.0%
GATAAATCTTCTGGCAAGGG+AGG - chr4.1:36054544-36054563 MS.gene41129:intron 45.0%
GATCAGCACCACAAATCAGA+AGG - chr4.1:36054703-36054722 MS.gene41129:intron 45.0%
GATCTATGCTGCAAAGGAGA+TGG + chr4.1:36053060-36053079 None:intergenic 45.0%
GATTGGAGACTTATCTGGTG+TGG + chr4.1:36053808-36053827 None:intergenic 45.0%
GCAGCATAGATCACCTGTTT+CGG - chr4.1:36053068-36053087 MS.gene41129:intron 45.0%
GCCGTATGAAGTCTTTCTAG+TGG - chr4.1:36051619-36051638 MS.gene41129:CDS 45.0%
GCGCTCTCTACAAGAGAAAT+AGG + chr4.1:36054247-36054266 None:intergenic 45.0%
GGATGTCATGGCTAGGTTTA+TGG + chr4.1:36054069-36054088 None:intergenic 45.0%
GGCGTTCCATTTCTTCTGAA+AGG - chr4.1:36052425-36052444 MS.gene41129:CDS 45.0%
GGTCTCCTTCTCATGATGAA+TGG - chr4.1:36053124-36053143 MS.gene41129:intron 45.0%
GTCTTCAAACCCAAGAAGCT+CGG + chr4.1:36050227-36050246 None:intergenic 45.0%
TACTAGGAGATCTCTGTTGC+AGG + chr4.1:36052915-36052934 None:intergenic 45.0%
TATCTCCATCTCCAGTCAGA+AGG - chr4.1:36053169-36053188 MS.gene41129:intron 45.0%
TCACAGCTCCAAACAGGATA+TGG + chr4.1:36053427-36053446 None:intergenic 45.0%
TCAGGTACAGTGACACTTGA+GGG - chr4.1:36053244-36053263 MS.gene41129:intron 45.0%
TCATGAGAAGGAGACCTCTT+AGG + chr4.1:36053120-36053139 None:intergenic 45.0%
TCCCCAGTTAGTAAGCGAAT+AGG - chr4.1:36054309-36054328 MS.gene41129:CDS 45.0%
TGGCTAGGTTTATGGTCTGT+TGG + chr4.1:36054061-36054080 None:intergenic 45.0%
TTAGCATCCAAGAACTGCTG+AGG + chr4.1:36050729-36050748 None:intergenic 45.0%
TTGGATGTAGGGTACATCTG+CGG - chr4.1:36049726-36049745 MS.gene41129:CDS 45.0%
! AAAGTGAGACATGGTGGAAG+TGG - chr4.1:36051385-36051404 MS.gene41129:CDS 45.0%
! ACAGGAATGGTGTTAGAGCA+AGG - chr4.1:36051201-36051220 MS.gene41129:intron 45.0%
! ATGGTGTTAGAGCAAGGAAC+AGG - chr4.1:36051207-36051226 MS.gene41129:intron 45.0%
! CTTGAGTGCCTTCTGATTTG+TGG + chr4.1:36054714-36054733 None:intergenic 45.0%
! CTTTCTAGTGGGATAAGGCT+TGG - chr4.1:36051631-36051650 MS.gene41129:CDS 45.0%
! GATCGGATTGGAGACTTATC+TGG + chr4.1:36053813-36053832 None:intergenic 45.0%
! GATCTTTTCTTGCCCGAAAC+AGG + chr4.1:36053084-36053103 None:intergenic 45.0%
! TAGGTGATGGTGATCTACGT+CGG + chr4.1:36052870-36052889 None:intergenic 45.0%
! TCTCTCTTGTTTGCCTCAGA+GGG + chr4.1:36054000-36054019 None:intergenic 45.0%
! TGGATTAGGCTGAAAGCGAT+AGG - chr4.1:36050872-36050891 MS.gene41129:CDS 45.0%
! TTCTCTCTTGTTTGCCTCAG+AGG + chr4.1:36054001-36054020 None:intergenic 45.0%
! TTGTTGTTGGGCCAGTGTTT+GGG - chr4.1:36051870-36051889 MS.gene41129:CDS 45.0%
!! ACAGGACTTCTTTGGAGTCT+TGG + chr4.1:36053204-36053223 None:intergenic 45.0%
!! ACTTTGAAGTCCAGGGATTC+AGG - chr4.1:36051149-36051168 MS.gene41129:intron 45.0%
!! AGAGAGCATCTTGGTGAACT+CGG - chr4.1:36051894-36051913 MS.gene41129:CDS 45.0%
!! ATGGTCTGTTGGCTTCTTTG+GGG + chr4.1:36054050-36054069 None:intergenic 45.0%
!! CAGATCCAACTTTGAAGTCC+AGG - chr4.1:36051141-36051160 MS.gene41129:intron 45.0%
!! CTGGTCTTACTTCTTGCTTG+TGG + chr4.1:36053843-36053862 None:intergenic 45.0%
!! CTTTGAAGTCCAGGGATTCA+GGG - chr4.1:36051150-36051169 MS.gene41129:intron 45.0%
!! GTGTTATGGTGGTACCGATA+AGG + chr4.1:36052031-36052050 None:intergenic 45.0%
!! TTTGTTGTTGGGCCAGTGTT+TGG - chr4.1:36051869-36051888 MS.gene41129:CDS 45.0%
!!! GTGGTGCTGATCACTACTTT+TGG + chr4.1:36054695-36054714 None:intergenic 45.0%
AAGACAGGAAAGAGGCCAAG+AGG - chr4.1:36054899-36054918 MS.gene41129:intron 50.0%
AATGTAGTGCCCTGAATCCC+TGG + chr4.1:36051162-36051181 None:intergenic 50.0%
ACAGACCGCAAAGGACTAGA+GGG + chr4.1:36053732-36053751 None:intergenic 50.0%
ACGATGAGGAAGCTGAACGA+AGG - chr4.1:36055052-36055071 MS.gene41129:intron 50.0%
ACTGGTGACTTCTGTTGACC+AGG + chr4.1:36054577-36054596 None:intergenic 50.0%
AGAGGCCAAGAGGAGGAAAA+AGG - chr4.1:36054909-36054928 MS.gene41129:intron 50.0%
AGTAGTTTGAGGGCCAGTGA+GGG + chr4.1:36051471-36051490 None:intergenic 50.0%
AGTGGCAAGCATAGAAGGGA+TGG - chr4.1:36054796-36054815 MS.gene41129:CDS 50.0%
ATAAAGGCTAAAAGGGGGGC+GGG + chr4.1:36052313-36052332 None:intergenic 50.0%
ATCGAAAGCGGGAAGAGAGA+CGG - chr4.1:36054965-36054984 MS.gene41129:intron 50.0%
CAACGTGTTAGTGTGGTGTC+TGG - chr4.1:36049970-36049989 MS.gene41129:CDS 50.0%
CATCTGCGGATCAAGACACT+CGG - chr4.1:36049740-36049759 MS.gene41129:CDS 50.0%
CCACACTAACACGTTGACAC+CGG + chr4.1:36049966-36049985 None:intergenic 50.0%
CGATGAGGAAGCTGAACGAA+GGG - chr4.1:36055053-36055072 MS.gene41129:intron 50.0%
CGCATTATGGGGGATTGCAT+TGG + chr4.1:36053003-36053022 None:intergenic 50.0%
CTACGTCGTCGTATAGGAGA+AGG + chr4.1:36052829-36052848 None:intergenic 50.0%
CTAGGAGATCTCTGTTGCAG+GGG + chr4.1:36052913-36052932 None:intergenic 50.0%
CTCAAACTACTGTAGGACGG+AGG - chr4.1:36051089-36051108 MS.gene41129:intron 50.0%
CTCCGTCCTACAGTAGTTTG+AGG + chr4.1:36051091-36051110 None:intergenic 50.0%
CTGCGTCTTTGAACAGGAGA+GGG + chr4.1:36052610-36052629 None:intergenic 50.0%
CTTCATACGGCGACTTAGGA+AGG + chr4.1:36051610-36051629 None:intergenic 50.0%
CTTCCCATAGAAGACTGCAC+AGG + chr4.1:36053222-36053241 None:intergenic 50.0%
CTTTGTGGTGAACGTCTTCG+AGG + chr4.1:36052484-36052503 None:intergenic 50.0%
GAACACCCTCTCCTGTTAGA+CGG - chr4.1:36052629-36052648 MS.gene41129:intron 50.0%
GAAGAAGAAGCTGCGAAAGG+AGG - chr4.1:36054936-36054955 MS.gene41129:intron 50.0%
GAATACCACTAAGCCGTGGA+CGG - chr4.1:36052965-36052984 MS.gene41129:intron 50.0%
GAATGCATTCCACGTCGGAT+AGG + chr4.1:36052565-36052584 None:intergenic 50.0%
GAGGGTGACCTTCGTCTAAT+AGG + chr4.1:36052889-36052908 None:intergenic 50.0%
GATCTCCGTCTAACAGGAGA+GGG + chr4.1:36052637-36052656 None:intergenic 50.0%
GATGCAGAAAGTGAACGGGA+AGG - chr4.1:36050599-36050618 MS.gene41129:intron 50.0%
GCAGATCACCTTATCCTGCA+CGG - chr4.1:36052764-36052783 MS.gene41129:intron 50.0%
GGAAGAGAGACGGCGAAAAA+GGG - chr4.1:36054975-36054994 MS.gene41129:intron 50.0%
GGAAGAGAGGCTGAAGAAAC+TGG - chr4.1:36050945-36050964 MS.gene41129:intron 50.0%
GGAGAAGAAGAAGCTGCGAA+AGG - chr4.1:36054933-36054952 MS.gene41129:intron 50.0%
GGGACTCAAGCTTCCTTCAA+TGG + chr4.1:36054029-36054048 None:intergenic 50.0%
GGTGAAGTTCTCCTTCTGAC+TGG + chr4.1:36053183-36053202 None:intergenic 50.0%
GGTGATCTACGTCGTCGTAT+AGG + chr4.1:36052835-36052854 None:intergenic 50.0%
GGTGTTCTGCGTCTTTGAAC+AGG + chr4.1:36052616-36052635 None:intergenic 50.0%
GTCAGGTACAGTGACACTTG+AGG - chr4.1:36053243-36053262 MS.gene41129:intron 50.0%
GTCCACTTGAAATCCCTCTG+AGG - chr4.1:36053984-36054003 MS.gene41129:intron 50.0%
GTGGTGATACCCATGTTGCA+GGG - chr4.1:36053674-36053693 MS.gene41129:CDS 50.0%
GTTCTCCTTCTGACTGGAGA+TGG + chr4.1:36053177-36053196 None:intergenic 50.0%
TACAGACCGCAAAGGACTAG+AGG + chr4.1:36053733-36053752 None:intergenic 50.0%
TCATCTTCTCCTATCCGACG+TGG - chr4.1:36052553-36052572 MS.gene41129:intron 50.0%
TCTCTCTGTACAGACCGCAA+AGG + chr4.1:36053741-36053760 None:intergenic 50.0%
TCTGCAGCATAAGAATCGCG+AGG + chr4.1:36054628-36054647 None:intergenic 50.0%
TCTGCGTCTTTGAACAGGAG+AGG + chr4.1:36052611-36052630 None:intergenic 50.0%
TGAAAGGGCAGCTAGTCATC+TGG - chr4.1:36054371-36054390 MS.gene41129:CDS 50.0%
TGCAATCCCCCATAATGCGA+AGG - chr4.1:36053004-36053023 MS.gene41129:intron 50.0%
TGCCTCAGAGGGATTTCAAG+TGG + chr4.1:36053989-36054008 None:intergenic 50.0%
TGGTGTTCCTCAGCAGTTCT+TGG - chr4.1:36050719-36050738 MS.gene41129:CDS 50.0%
TGTGGTGATACCCATGTTGC+AGG - chr4.1:36053673-36053692 MS.gene41129:CDS 50.0%
! ACATGGTCTTCTGGAAGCGA+AGG - chr4.1:36050267-36050286 MS.gene41129:CDS 50.0%
! AGATGACTAGCTGCCCTTTC+AGG + chr4.1:36054372-36054391 None:intergenic 50.0%
! CTCCTCCTTTTTCCTCCTCT+TGG + chr4.1:36054917-36054936 None:intergenic 50.0%
! GAGACATGGTGGAAGTGGTT+AGG - chr4.1:36051390-36051409 MS.gene41129:CDS 50.0%
! GATTTACTGGTTGCCCTTGC+AGG + chr4.1:36052132-36052151 None:intergenic 50.0%
! GGATTCAGGGCACTACATTC+AGG - chr4.1:36051163-36051182 MS.gene41129:intron 50.0%
! TCAGGGCACTACATTCAGGA+TGG - chr4.1:36051167-36051186 MS.gene41129:intron 50.0%
!! AGGAGGAGAAGCATCGAAAG+CGG - chr4.1:36054953-36054972 MS.gene41129:intron 50.0%
!! TGGTCTGTTGGCTTCTTTGG+GGG + chr4.1:36054049-36054068 None:intergenic 50.0%
!! TGTTTGGGCAGAGAGCATCT+TGG - chr4.1:36051885-36051904 MS.gene41129:CDS 50.0%
ACAGGAAAGAGGCCAAGAGG+AGG - chr4.1:36054902-36054921 MS.gene41129:intron 55.0%
ACTAACTACTGCAGGCAGGC+AGG + chr4.1:36053929-36053948 None:intergenic 55.0%
AGAAGGAGACCTCTTAGGGG+AGG + chr4.1:36053115-36053134 None:intergenic 55.0%
AGATCTCTGTTGCAGGGGTG+AGG + chr4.1:36052908-36052927 None:intergenic 55.0%
ATAGTAGAACTCCACGGCGC+AGG - chr4.1:36053031-36053050 MS.gene41129:intron 55.0%
CAGTAGTTTGAGGGCCAGTG+AGG + chr4.1:36051472-36051491 None:intergenic 55.0%
CGATCTCCGTCTAACAGGAG+AGG + chr4.1:36052638-36052657 None:intergenic 55.0%
CGTCGAATACCACTAAGCCG+TGG - chr4.1:36052961-36052980 MS.gene41129:intron 55.0%
CGTTGTCGTACTGGAGAAGG+TGG + chr4.1:36052745-36052764 None:intergenic 55.0%
CTACGTCGGTGCATTGGAGA+AGG + chr4.1:36052856-36052875 None:intergenic 55.0%
CTGCGTTGTCGTACTGGAGA+AGG + chr4.1:36052748-36052767 None:intergenic 55.0%
CTGCTCCTTCACTCGTCTCT+GGG + chr4.1:36054090-36054109 None:intergenic 55.0%
GAACTGCTGAGGAACACCAC+TGG + chr4.1:36050718-36050737 None:intergenic 55.0%
GACATCCCAGAGACGAGTGA+AGG - chr4.1:36054082-36054101 MS.gene41129:intron 55.0%
GACGGCGAAAAAGGGAAGAG+CGG - chr4.1:36054983-36055002 MS.gene41129:intron 55.0%
GAGGAAGCTGAACGAAGGGA+TGG - chr4.1:36055057-36055076 MS.gene41129:intron 55.0%
GATCTCTGTTGCAGGGGTGA+GGG + chr4.1:36052907-36052926 None:intergenic 55.0%
GATGCTCTCTGCCCAAACAC+TGG + chr4.1:36051884-36051903 None:intergenic 55.0%
GCAGATCTCCAAAGGGTCGA+GGG - chr4.1:36052404-36052423 MS.gene41129:intron 55.0%
GGACGGAGGATTAGATGCGA+AGG - chr4.1:36051103-36051122 MS.gene41129:intron 55.0%
GGAGATGGAGATACACGTGC+AGG + chr4.1:36053162-36053181 None:intergenic 55.0%
GGATACAGCGGTCTTCACGA+CGG - chr4.1:36052446-36052465 MS.gene41129:CDS 55.0%
GGCCAAGAGGAGGAAAAAGG+AGG - chr4.1:36054912-36054931 MS.gene41129:intron 55.0%
GGGAAGAGAGACGGCGAAAA+AGG - chr4.1:36054974-36054993 MS.gene41129:intron 55.0%
GGTGATCTACGTCGGTGCAT+TGG + chr4.1:36052862-36052881 None:intergenic 55.0%
GGTGATCTGCGTTGTCGTAC+TGG + chr4.1:36052754-36052773 None:intergenic 55.0%
GTGATCTGCGTCGTCGTACT+GGG + chr4.1:36052693-36052712 None:intergenic 55.0%
TCTGCTCCTTCACTCGTCTC+TGG + chr4.1:36054091-36054110 None:intergenic 55.0%
TGACAGAGGCTCACCTGCAA+GGG - chr4.1:36052116-36052135 MS.gene41129:CDS 55.0%
TGATCTGCGTCGTCGTACTG+GGG + chr4.1:36052692-36052711 None:intergenic 55.0%
TGCAGATCTCCAAAGGGTCG+AGG - chr4.1:36052403-36052422 MS.gene41129:intron 55.0%
TTGACAGAGGCTCACCTGCA+AGG - chr4.1:36052115-36052134 MS.gene41129:CDS 55.0%
! CCGGTGTCAACGTGTTAGTG+TGG - chr4.1:36049963-36049982 MS.gene41129:CDS 55.0%
! GGTATTCGACGCATCGGTGA+AGG + chr4.1:36052952-36052971 None:intergenic 55.0%
! GGTGTTCTGCGTCGACGAAA+TGG + chr4.1:36052589-36052608 None:intergenic 55.0%
! TGCACCGGAATTGGAGCATC+TGG - chr4.1:36049804-36049823 MS.gene41129:CDS 55.0%
!! CACTCGTCTCTGGGATGTCA+TGG + chr4.1:36054081-36054100 None:intergenic 55.0%
!! GGAGGAGAAGCATCGAAAGC+GGG - chr4.1:36054954-36054973 MS.gene41129:intron 55.0%
!! GTCTCTGGGATGTCATGGCT+AGG + chr4.1:36054076-36054095 None:intergenic 55.0%
ATGGAACGCCCTCGACCCTT+TGG + chr4.1:36052415-36052434 None:intergenic 60.0%
CTGCAAGTGCCTCCCCTAAG+AGG - chr4.1:36053103-36053122 MS.gene41129:intron 60.0%
CTGCGTCGTCGTACTGGAGA+GGG + chr4.1:36052688-36052707 None:intergenic 60.0%
CTGCGTCTCCGTGCAGGATA+AGG + chr4.1:36052775-36052794 None:intergenic 60.0%
CTGCGTCTTCGCACAGGAGA+GGG + chr4.1:36052802-36052821 None:intergenic 60.0%
CTTCGTCGTCGCACTGGAGA+GGG + chr4.1:36052661-36052680 None:intergenic 60.0%
GAGAGCTTGACCTCCGTCCA+CGG + chr4.1:36052981-36053000 None:intergenic 60.0%
GAGGGCGATCTCCGTCTAAC+AGG + chr4.1:36052643-36052662 None:intergenic 60.0%
GATCTCCTAGTATGCGGCGC+AGG - chr4.1:36052923-36052942 MS.gene41129:intron 60.0%
GGTGATCTGCGTCGTCGTAC+TGG + chr4.1:36052694-36052713 None:intergenic 60.0%
GGTGATCTGCGTCTTCGCAC+AGG + chr4.1:36052808-36052827 None:intergenic 60.0%
GGTGATCTTCGTCGTCGCAC+TGG + chr4.1:36052667-36052686 None:intergenic 60.0%
TACCACTAAGCCGTGGACGG+AGG - chr4.1:36052968-36052987 MS.gene41129:intron 60.0%
TCTGCGTCGTCGTACTGGAG+AGG + chr4.1:36052689-36052708 None:intergenic 60.0%
TCTGCGTCTTCGCACAGGAG+AGG + chr4.1:36052803-36052822 None:intergenic 60.0%
TCTTCGTCGTCGCACTGGAG+AGG + chr4.1:36052662-36052681 None:intergenic 60.0%
CGTCGTCGTACTGGGGAAGG+TGG + chr4.1:36052715-36052734 None:intergenic 65.0%
CTGCGTCGTCGTACTGGGGA+AGG + chr4.1:36052718-36052737 None:intergenic 65.0%
GACCTCCGTCCACGGCTTAG+TGG + chr4.1:36052973-36052992 None:intergenic 65.0%
GGAGATCTGCGTCTCCGTGC+AGG + chr4.1:36052781-36052800 None:intergenic 65.0%
GGTGACCTGCGCCGCATACT+AGG + chr4.1:36052931-36052950 None:intergenic 65.0%
GGAGATGGAGACCTGCGCCG+TGG + chr4.1:36053045-36053064 None:intergenic 70.0%
GGCAAGGGAGGCGAGTCTCC+TGG - chr4.1:36054556-36054575 MS.gene41129:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 36049404 36055185 36049404 ID=MS.gene41129
chr4.1 mRNA 36049404 36055185 36049404 ID=MS.gene41129.t1;Parent=MS.gene41129
chr4.1 exon 36055165 36055185 36055165 ID=MS.gene41129.t1.exon1;Parent=MS.gene41129.t1
chr4.1 CDS 36055165 36055185 36055165 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36054764 36054853 36054764 ID=MS.gene41129.t1.exon2;Parent=MS.gene41129.t1
chr4.1 CDS 36054764 36054853 36054764 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36054301 36054423 36054301 ID=MS.gene41129.t1.exon3;Parent=MS.gene41129.t1
chr4.1 CDS 36054301 36054423 36054301 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36053816 36053983 36053816 ID=MS.gene41129.t1.exon4;Parent=MS.gene41129.t1
chr4.1 CDS 36053816 36053983 36053816 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36053623 36053709 36053623 ID=MS.gene41129.t1.exon5;Parent=MS.gene41129.t1
chr4.1 CDS 36053623 36053709 36053623 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36053361 36053485 36053361 ID=MS.gene41129.t1.exon6;Parent=MS.gene41129.t1
chr4.1 CDS 36053361 36053485 36053361 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36052554 36052601 36052554 ID=MS.gene41129.t1.exon7;Parent=MS.gene41129.t1
chr4.1 CDS 36052554 36052601 36052554 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36052411 36052467 36052411 ID=MS.gene41129.t1.exon8;Parent=MS.gene41129.t1
chr4.1 CDS 36052411 36052467 36052411 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36051342 36052181 36051342 ID=MS.gene41129.t1.exon9;Parent=MS.gene41129.t1
chr4.1 CDS 36051342 36052181 36051342 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36050712 36050894 36050712 ID=MS.gene41129.t1.exon10;Parent=MS.gene41129.t1
chr4.1 CDS 36050712 36050894 36050712 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36050461 36050604 36050461 ID=MS.gene41129.t1.exon11;Parent=MS.gene41129.t1
chr4.1 CDS 36050461 36050604 36050461 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36050135 36050329 36050135 ID=MS.gene41129.t1.exon12;Parent=MS.gene41129.t1
chr4.1 CDS 36050135 36050329 36050135 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
chr4.1 exon 36049404 36050046 36049404 ID=MS.gene41129.t1.exon13;Parent=MS.gene41129.t1
chr4.1 CDS 36049404 36050046 36049404 ID=cds.MS.gene41129.t1;Parent=MS.gene41129.t1
Gene Sequence

>MS.gene41129

ATGTCAGGCGGTTTTTTTCGAGTAAGTTCATCGCAAACCATTGAATTCACCATTTCAATTATTCATTTGCTTTTTGTAATAATGAATTGTTATTTAATCATTTTTCAGATCTTATTTGTGACTTTAATTTGATGAAATTAAGTACTGTATGCTATGAAATTAGGGTTCAAAACTTTGAATATTTGTTGATGAAACTGAATTAAGATTTGTGTTGTAATTCAACTTGTTATAGTGATTTTTGGCCTGTTTTTAAATTTTTGTATATTCATAATTGAAAAATGTTACTTAGCTAGTTAGCTTATGAAATATAACATGTTGAATTTTGGATGTAGGGTACATCTGCGGATCAAGACACTCGGTTTTCGAACAAGCAAGCGAAGCTGCTTAAGTCACAGAAGTTTGCACCGGAATTGGAGCATCTGGTTTGTTTTCTTGATTGATTAATTTAGATTCGTTGATTTTTTTTATAGGGAGAATTGTCTCTATAGCACCGATACTTTTGATAGCAGACACCGACAAACGTGATTACATTCAATTATGCCATTTTTCCTAATTATTACCGGTGTCAACGTGTTAGTGTGGTGTCTGGTGTTCGCGTCTGTGTCAGTGCTTTGTAGAGAACTATTTCCAACTGCTTTTGAAATTTGGAACCTCAAACATCATGGTGTATATGATCTCGATATATTTATTTATTTTAACTAGCGACATCGCTTTCCTCTGCTATTTTTTTGATGTGAGTCGTGCTTGAAAAATGATTTGTAGGTGGACATGACAAAGGTGAATATGGACGTAATGAGGCCTTGGATTACTAGAAAAGTGACCGAGCTTCTTGGGTTTGAAGACGAAGTGCTTATTAACTTCATACATGGTCTTCTGGAAGCGAAGGTAATTTATTGTTTTTGAACTATTTTGGTTATACGGTAATCTTGGAGATTAATGGCGCTTTCAAAGTTCTATTTTTTATTTGCTGAATACTTACTTTATCGTTTCTTTATCATTATTATTATTATTATCATTAAATATTAAATCGTATTTGTTGAAATCAATATGGCATTTATTTCAAACATTATAATCACTTTGAGTTTGAGTTGTAACTGTGCAATCTTTTTCCTCTAAATGAACTATCATAGATTTACATGCACTTTCTGATAATGCCATGCTTTTATTTTTTACCTTGCAACATTCGGTTTGTAATGATGCAGAAAGTGAACGGGAAGGAGATTCAAATACAAATTACTGGATTCATGGAAAAAAACACCGGTAAGTTCATGAAAGAGCTTTGGACACTTCTTCTCAGTGCACAGAAAAATGCCAGTGGTGTTCCTCAGCAGTTCTTGGATGCTAAAGAAGAAGAACTCCTGAAAAAGAAGGTTCTTTTAAGTCTTGATTTACCATTCATTGGGTATCAAAATACCTTTTATCCTTGCACTTTTTTTTGGCCTTTCTGAATAAAGTTTTTTACTGTCGATGGATTAGGCTGAAAGCGATAGGATAACAAGTGAAATTCAGAGGAAGAAAGATAAGGAGAGTAAAGATATCATGGAAGAGAGGCTGAAGAAACTGGTAATACTATTTGTTCGTTGCTGGATTACGTTTTATAGGGCTGAGATTTTGGTTTTAACTTCCATTTGTGTTTTCATTGCGCTCAGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCTCAAACTACTGTAGGACGGAGGATTAGATGCGAAGGATAATGATGCTGCTTCAGATCCAACTTTGAAGTCCAGGGATTCAGGGCACTACATTCAGGATGGAAAACAAACTGACAGGAATGGTGTTAGAGCAAGGAACAGGTAAAATCGGCCGATTCCTTCTTTTTTAATCATTATGTGCCGATGTTTTTTTCTATTTCATTTTCTTATTGGTTTCACAGTGGGTCAAACATCAATATATAAGCGTAATTATGTTCTCAGCTTCTTAAAGTGGATGGACTTGTGTTATGATTTTATAAAGTGAGACATGGTGGAAGTGGTTAGGCATCATTCTAGCAGTTGCATGCATAACTAAAATATGCATACATAATATATACAGGCCCTCACTGGCCCTCAAACTACTGTGTTATGAAGTCATTTTAATCCCGACAAAAATATGCATAACTAAGAACATTAGTAGCTGTATCTCACTTAGAATATAAACTTAATAACAAGCCAACAAAAACAAATTTTGTAGAACCTTCCTAAGTCGCCGTATGAAGTCTTTCTAGTGGGATAAGGCTTGGTTGTTGTTGTTGCTCATAACTTTCCTTGACAACTATAGAATTGGATAACATAATAGTTAATGCAAAGCATTGGGAAAATCACATGAAATTTGTAAAACTTTCTGTGTTATGAAGTCATTTTAATCCATTGTTTTTTGATATTTTGTATGTTGGATTAGATGTTGGAATAGCCTCTGTTCAGTTTTTCAATTTTCTTTTAGCTTAAACTCTATTATTTTGTTGTTGGGCCAGTGTTTGGGCAGAGAGCATCTTGGTGAACTCGGCTCTGCACCTAAAAACCCTGTTAAATGAGTTCTTGAATCTTTAGTACTAATTAGCTTTTACTCTCTTATAGGATTTCTAGATCTCCACATTCACCTGCAGTTTTCAATTCACCTTATCGGTACCACCATAACACTTCTTAACACATTTTCCATCTTGTATATTGGATTGAAATGCTCTAAATGTCGTATTTGCTATCTTTGACAGAGGCTCACCTGCAAGGGCAACCAGTAAATCATTTTCGAATTCCCGAAGTTATTCAAGGTCCGCTTTTGCATATACGCTTACTTAGTTTCGTTTGGCTTTATATGTTCATGTAGCTTTTGCCATTCAGTAGCATAATCTGATGGGTATTAGATGTTCAACTTTGCCTGCTAACGGATCTTTATTTTTCTCCCGCCCCCCTTTTAGCCTTTATTAATGAGTAATATATTGCACATTTAATTTTTATTTGGATTTGTCATTTTGAACTAATGTCAAGGAGTATATGCAGATCTCCAAAGGGTCGAGGGCGTTCCATTTCTTCTGAAAGGATACAGCGGTCTTCACGACGGCAATCTATTTCTCCTCGAAGACGTTCACCACAAAGATCTCCTCATAGGAGGCCATCTTATTCAAGGAGAAGATCTAGATCTAGCTCATCTTCTCCTATCCGACGTGGAATGCATTCTCCATTTCGTCGACGCAGAACACCCTCTCCTGTTCAAAGACGCAGAACACCCTCTCCTGTTAGACGGAGATCGCCCTCTCCAGTGCGACGACGAAGATCACCCTCTCCAGTACGACGACGCAGATCACCACCTTCCCCAGTACGACGACGCAGATCACCACCTTCTCCAGTACGACAACGCAGATCACCTTATCCTGCACGGAGACGCAGATCTCCCTCTCCTGTGCGAAGACGCAGATCACCTTCTCCTATACGACGACGTAGATCACCTTCTCCAATGCACCGACGTAGATCACCATCACCTATTAGACGAAGGTCACCCTCACCCCTGCAACAGAGATCTCCTAGTATGCGGCGCAGGTCACCTTCACCGATGCGTCGAATACCACTAAGCCGTGGACGGAGGTCAAGCTCTCCAATGCAATCCCCCATAATGCGAAGGTATGATAGTAGAACTCCACGGCGCAGGTCTCCATCTCCTTTGCAGCATAGATCACCTGTTTCGGGCAAGAAAAGATCTGCAAGTGCCTCCCCTAAGAGGTCTCCTTCTCATGATGAATGGAGTTCTCAGTCTCCTGCACGTGTATCTCCATCTCCAGTCAGAAGGAGAACTTCACCAAGACTCCAAAGAAGTCCTGTGCAGTCTTCTATGGGAAGAGTCAGGTACAGTGACACTTGAGGGAATGCTTGAATAAGTTTGTTTGATTTTTCTTTGGTGTGCATGATTTTAATGTGATGATAAGAAAACTTTTAAAAATGAAATATTTTAAATTTTTATTTTATTCAATTTTGAAGTAGGCTTATAGTTTAATAACCAGAATTACTATTATGGTTCTACTCCATATCCTGTTTGGAGCTGTGAAATTTTGCAGACTAATTTTTTAAGGGAAATGTTAACTTGTGCCCTTAAGGCACATGTTTAGAAGTCAAATGTAGAAACTTATTTTTGGAGATTGTGCATTCAATGTCTTGAAAGGTTAAAAACTTATTTTTTCAATACAACACTTGTGTTTTAATTCTTTTTTTAGATCCTTAACATGACCCATTTTTTAAATAAGGTTTGTTCTTGCAAGAAAATTTGTGATATCTGTGGTGATACCCATGTTGCAGGGTGCAAAAAATATTGTCACCGGAAGTTTATCAACCCTCTAGTCCTTTGCGGTCTGTACAGAGAGATAAAAATGGCAAAGCTTCAGGCTATAAATCACAAGATTCAATGTCCACACCAGATAAGTCTCCAATCCGATCAATATCACCACAAGCAAGAAGTAAGACCAGCAGTAAAAATAGAAGGTAACTTTCCTTGACTTCTCATACAACTCTTTTATCTGCTCATGGTTGCCTGCCTGCCTGCAGTAGTTAGTTTATGCATATTTATTTTGGCTTTTGAAAATGTATAGTCCACTTGAAATCCCTCTGAGGCAAACAAGAGAGAAATTGACCATTGAAGGAAGCTTGAGTCCCCCAAAGAAGCCAACAGACCATAAACCTAGCCATGACATCCCAGAGACGAGTGAAGGAGCAGAAGAAGCATATTATTCTAGGTTTGAATACGAATTGGATAGCTTTCATTTACTTCTTTTAAATATACGAAATGTAAATCACTGTCATTGATTTGTTTATTGTTTTGCTTGCTTCTTTTTTTCTTTTTTTCTTCTTCCTATTTCTCTTGTAGAGAGCGCAGAGATCCTAAATCAAATTCATCCGAAAAGAAATCAAGACACTCCCCAGTTAGTAAGCGAATAGGTTCATCTGCCAAATTTCATCACGAGGATGAGTTTTATCCTGAAAGGGCAGCTAGTCATCTGGCTTCTGATTCTAAGCATTATGATAATAATGAAAGGAATAAGAAAGGCCAGGATATAAAATGGTAATATGATTGGCATACTGCACTTGTTCTAACTAGTTTGAATGACTTCACACTGTACATCTCTGATAATGGTAAACTCCTTTGGCAGTGATAAATCTTCTGGCAAGGGAGGCGAGTCTCCTGGTCAACAGAAGTCACCAGTGAACAAGGAGTTTTTTTCTGGCGAGAAGCCTCGCGATTCTTATGCTGCAGAAACAAAAAAAACTGATGACAAGGATCAATTCAATTCAAAATATGCCAAAAGTAGTGATCAGCACCACAAATCAGAAGGCACTCAAGATTTAGTTGGAAAAGTTGATCACATCAATCAGAGTGCTTCTTATGATTCTGTTTCTGAAGAAAGTGGCAAGCATAGAAGGGATGGAAAGGATAGGAGAAAGCATAAAAGGTCAGAGAGAAAAGTTGTTTCTTCTGATGAGAATGATAGTTATGATTCTGAGTTAGAAGACAGGAAAGAGGCCAAGAGGAGGAAAAAGGAGGAGAAGAAGAAGCTGCGAAAGGAGGAGAAGCATCGAAAGCGGGAAGAGAGACGGCGAAAAAGGGAAGAGCGGCATGCTGAAAAGCTGAAAATGAAGAGTAAACCAGGCTATATTTCAGACGATGAGGAAGCTGAACGAAGGGATGGTCACCAAAGTGATGATGAAGAACCATACGATCCAAAGAAGCTTGAGATTGAGCTGCGTAATAAGGCTCTTGAGTCCCTCAAAGCAAAGAAGAGCATGAATAATTAA
Protein sequence

>MS.gene41129.t1

MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMDVMRPWITRKVTELLGFEDEVLINFIHGLLEAKKVNGKEIQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQQFLDAKEEELLKKKAESDRITSEIQRKKDKESKDIMEERLKKLDGGLDAKDNDAASDPTLKSRDSGHYIQDGKQTDRNGVRARNRISRSPHSPAVFNSPYRGSPARATSKSFSNSRSYSRSPKGRGRSISSERIQRSSRRQSISPRRRSPQRSPHRRPSYSRRRSRSSSSSPIRRGMHSPFRRRRTPSPVQRRRTPSPVRRRSPSPVRRRRSPSPVRRRRSPPSPVRRRRSPPSPVRQRRSPYPARRRRSPSPVRRRRSPSPIRRRRSPSPMHRRRSPSPIRRRSPSPLQQRSPSMRRRSPSPMRRIPLSRGRRSSSPMQSPIMRRYDSRTPRRRSPSPLQHRSPVSGKKRSASASPKRSPSHDEWSSQSPARVSPSPVRRRTSPRLQRSPVQSSMGRVRVQKILSPEVYQPSSPLRSVQRDKNGKASGYKSQDSMSTPDKSPIRSISPQARSKTSSKNRSPLEIPLRQTREKLTIEGSLSPPKKPTDHKPSHDIPETSEGAEEAYYSRERRDPKSNSSEKKSRHSPVSKRIGSSAKFHHEDEFYPERAASHLASDSKHYDNNERNKKGQDIKCDKSSGKGGESPGQQKSPVNKEFFSGEKPRDSYAAETKKTDDKDQFNSKYAKSSDQHHKSEGTQDLVGKVDHINQSASYDSVSEESGKHRRDGKDRRKHKRSERKVVSSDENDSYDSELEDRKEAKRRKKEEKKKLRKEEKHRKREERRRKREERHAEKLKMKSKPGYISDDEEAERRDGHQSDDEEPYDPKKLEIELRNKALESLKAKKSMNN