Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22282.t1 | XP_003610955.1 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 2.90E-95 | 357.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22282.t1 | F4I9J7 | 63.5 | 181 | 56 | 6 | 7 | 178 | 5 | 184 | 3.3e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22282.t1 | G7K988 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 2.1e-95 | 357.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30557 | MS.gene22282 | PPI |
| MS.gene22500 | MS.gene22282 | PPI |
| MS.gene22282 | MS.gene07051 | PPI |
| MS.gene68735 | MS.gene22282 | PPI |
| MS.gene28807 | MS.gene22282 | PPI |
| MS.gene22282 | MS.gene063086 | PPI |
| MS.gene021158 | MS.gene22282 | PPI |
| MS.gene22282 | MS.gene072702 | PPI |
| MS.gene68136 | MS.gene22282 | PPI |
| MS.gene003999 | MS.gene22282 | PPI |
| MS.gene22282 | MS.gene014199 | PPI |
| MS.gene22282 | MS.gene41129 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22282.t1 | MTR_5g008890 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 6.34e-132 | 367 |
| MS.gene22282.t1 | MTR_3g054060 | 48.276 | 174 | 52 | 5 | 1 | 171 | 31 | 169 | 8.36e-44 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22282.t1 | AT1G51510 | 64.246 | 179 | 54 | 6 | 9 | 178 | 7 | 184 | 5.07e-74 | 221 |
| MS.gene22282.t1 | AT5G64200 | 32.353 | 102 | 68 | 1 | 79 | 180 | 5 | 105 | 5.17e-11 | 60.5 |
| MS.gene22282.t1 | AT5G64200 | 32.353 | 102 | 68 | 1 | 79 | 180 | 5 | 105 | 5.17e-11 | 60.5 |
Find 43 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAACCATTTATGTTGAT+TGG | 0.221624 | 5.3:+3008148 | MS.gene22282:CDS |
| TATTGAAGGATGGATTATTT+TGG | 0.283878 | 5.3:+3005749 | MS.gene22282:CDS |
| AACTCTCGTCTCGCTGATTC+CGG | 0.283971 | 5.3:+3005591 | MS.gene22282:CDS |
| GAAAGCCCAATCAACATAAA+TGG | 0.296555 | 5.3:-3008154 | None:intergenic |
| CGCCGCCGACGGAGAAGCTT+TGG | 0.306556 | 5.3:+3005413 | MS.gene22282:CDS |
| AGTGATGGCGGATTTGAGTT+TGG | 0.318147 | 5.3:-3005508 | None:intergenic |
| GATGATTTGCAGAATGCTTT+TGG | 0.361063 | 5.3:+3005801 | MS.gene22282:CDS |
| GTGATGGCGGATTTGAGTTT+GGG | 0.363430 | 5.3:-3005507 | None:intergenic |
| CTGACGGAAACCGCGACCTT+TGG | 0.364553 | 5.3:-3005547 | None:intergenic |
| CTTCTAACTGACTCATTGAT+AGG | 0.375297 | 5.3:-3008186 | None:intergenic |
| ACAAACCATTTATGTTGATT+GGG | 0.381801 | 5.3:+3008149 | MS.gene22282:CDS |
| CTCACTGCTGAGGGTGGTCC+TGG | 0.420911 | 5.3:+3005624 | MS.gene22282:CDS |
| GCCAGAGGAAGATGACTTGA+TGG | 0.429124 | 5.3:+3005443 | MS.gene22282:CDS |
| ATGAGTCAGTTAGAAGAAAC+AGG | 0.431891 | 5.3:+3008193 | MS.gene22282:CDS |
| GAGACGAGAGTTACGGTTAG+AGG | 0.454033 | 5.3:-3005580 | None:intergenic |
| GCGGATTTGAGTTTGGGATG+TGG | 0.456064 | 5.3:-3005501 | None:intergenic |
| CAAAGGTCGCGGTTTCCGTC+AGG | 0.458944 | 5.3:+3005548 | MS.gene22282:CDS |
| TTGAATCTTGATCGCCGTAC+TGG | 0.470728 | 5.3:+3005852 | MS.gene22282:CDS |
| AGAGTTACGGTTAGAGGAAT+CGG | 0.477329 | 5.3:-3005574 | None:intergenic |
| TCCATCAAGTCATCTTCCTC+TGG | 0.480725 | 5.3:-3005444 | None:intergenic |
| GTTGATTGGGCTTTCAGCAG+TGG | 0.486700 | 5.3:+3008162 | MS.gene22282:CDS |
| CTCTATTCAGCGACGATGCA+AGG | 0.487696 | 5.3:+3005387 | None:intergenic |
| AATGCAATAGAGAATTTGAA+TGG | 0.500993 | 5.3:+3008111 | MS.gene22282:CDS |
| TGGGGATACAAACATCTTTG+AGG | 0.509393 | 5.3:-3005648 | None:intergenic |
| GGGATGTGGAGGAGAAGCTT+CGG | 0.519462 | 5.3:-3005487 | None:intergenic |
| AGCAGTGAGAGTATCGAAAC+CGG | 0.528470 | 5.3:-3005610 | None:intergenic |
| TTCGATACTCTCACTGCTGA+GGG | 0.535196 | 5.3:+3005615 | MS.gene22282:CDS |
| ATGCAAGGAAGCGCCGCCGA+CGG | 0.548735 | 5.3:+3005402 | MS.gene22282:CDS |
| TACAAACATCTTTGAGGACC+AGG | 0.553987 | 5.3:-3005642 | None:intergenic |
| ATGAGCGCTCTGAGGAAGCT+CGG | 0.562915 | 5.3:+3008088 | MS.gene22282:CDS |
| AATCAGCGAGACGAGAGTTA+CGG | 0.563114 | 5.3:-3005587 | None:intergenic |
| GATGACTTGATGGACGAAGA+AGG | 0.572561 | 5.3:+3005453 | MS.gene22282:CDS |
| GATTTGAGTTTGGGATGTGG+AGG | 0.573507 | 5.3:-3005498 | None:intergenic |
| AGCTTTGGATTTCGAGCCAG+AGG | 0.579650 | 5.3:+3005428 | MS.gene22282:CDS |
| ATCCAAAGCTTCTCCGTCGG+CGG | 0.583085 | 5.3:-3005415 | None:intergenic |
| TTTCGATACTCTCACTGCTG+AGG | 0.590321 | 5.3:+3005614 | MS.gene22282:CDS |
| TTTGGGAACGGAAGTGATGG+CGG | 0.614347 | 5.3:-3005520 | None:intergenic |
| GATACTCTCACTGCTGAGGG+TGG | 0.647746 | 5.3:+3005618 | MS.gene22282:CDS |
| GCACCTTAACAAAACCAGTA+CGG | 0.658816 | 5.3:-3005866 | None:intergenic |
| TTTGGTGACTGGTGTACATG+AGG | 0.661358 | 5.3:+3005767 | MS.gene22282:CDS |
| TAGAGGAATCGGAATCCTGA+CGG | 0.677725 | 5.3:-3005563 | None:intergenic |
| GATTGAATATGAGCGCTCTG+AGG | 0.688874 | 5.3:+3008080 | MS.gene22282:CDS |
| GAAATCCAAAGCTTCTCCGT+CGG | 0.701772 | 5.3:-3005418 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTTAATAAAATAAGATA+AGG | - | chr5.3:3007801-3007820 | None:intergenic | 10.0% |
| !!! | TATCTTATTTTATTAAGAAA+AGG | + | chr5.3:3007801-3007820 | MS.gene22282:intron | 10.0% |
| !! | AAATTGACAAAAATTGAAAT+TGG | - | chr5.3:3005671-3005690 | None:intergenic | 15.0% |
| !! | AATTGACAAAAATTGAAATT+GGG | - | chr5.3:3005670-3005689 | None:intergenic | 15.0% |
| !! | TTGAAAAAAAAAAAAAAGGA+AGG | + | chr5.3:3006577-3006596 | MS.gene22282:intron | 15.0% |
| !!! | TACTTTTCATTCTTAAATTA+TGG | + | chr5.3:3006108-3006127 | MS.gene22282:intron | 15.0% |
| !! | AGAAGAAAAAAAAAAAAGGA+AGG | - | chr5.3:3006471-3006490 | None:intergenic | 20.0% |
| !! | ATTGACAAAAATTGAAATTG+GGG | - | chr5.3:3005669-3005688 | None:intergenic | 20.0% |
| !! | ATTTGAAAAAAAAATACTGC+AGG | - | chr5.3:3007600-3007619 | None:intergenic | 20.0% |
| !! | TGGAAGAAGAAAAAAAAAAA+AGG | - | chr5.3:3006475-3006494 | None:intergenic | 20.0% |
| !! | TTGAGAAATATATGGAAAAA+TGG | - | chr5.3:3006781-3006800 | None:intergenic | 20.0% |
| !! | TTTATAGACAGTGTATATTA+CGG | - | chr5.3:3006971-3006990 | None:intergenic | 20.0% |
| !! | TTTGAAAAAAAAATACTGCA+GGG | - | chr5.3:3007599-3007618 | None:intergenic | 20.0% |
| !!! | AATGCAGTTTTGATTTTTAA+AGG | + | chr5.3:3007645-3007664 | MS.gene22282:intron | 20.0% |
| !!! | GGCTTTGAAAAAAAAAAAAA+AGG | + | chr5.3:3006573-3006592 | MS.gene22282:intron | 20.0% |
| !!! | TACTTGTAATTTTGTAAACA+GGG | + | chr5.3:3007844-3007863 | MS.gene22282:intron | 20.0% |
| !!! | TGATAAGCATTTTGATTTTA+GGG | + | chr5.3:3008048-3008067 | MS.gene22282:intron | 20.0% |
| ! | AAAACAAAACCCTCATAATT+TGG | - | chr5.3:3006385-3006404 | None:intergenic | 25.0% |
| ! | AAACAAAACCCTCATAATTT+GGG | - | chr5.3:3006384-3006403 | None:intergenic | 25.0% |
| ! | AAGTTGCTAAATAAAGTTAC+AGG | - | chr5.3:3007976-3007995 | None:intergenic | 25.0% |
| ! | AATGCAATAGAGAATTTGAA+TGG | + | chr5.3:3008111-3008130 | MS.gene22282:CDS | 25.0% |
| ! | AATTCAAGTCATGAATCAAA+TGG | + | chr5.3:3007065-3007084 | MS.gene22282:intron | 25.0% |
| ! | AGTGTATTAATCTATGTTGT+TGG | - | chr5.3:3006258-3006277 | None:intergenic | 25.0% |
| ! | ATGATGTATGAACATAGAAA+CGG | - | chr5.3:3007903-3007922 | None:intergenic | 25.0% |
| ! | CAAATCTTCACATGATAAAA+TGG | - | chr5.3:3008018-3008037 | None:intergenic | 25.0% |
| ! | CAGAAGGTTAACAATAAAAA+AGG | - | chr5.3:3006856-3006875 | None:intergenic | 25.0% |
| ! | CTAAATAAAGTTACAGGAAA+AGG | - | chr5.3:3007970-3007989 | None:intergenic | 25.0% |
| ! | GTGTATCATTGTATCTATAT+GGG | - | chr5.3:3007211-3007230 | None:intergenic | 25.0% |
| ! | GTGTATTAATCTATGTTGTT+GGG | - | chr5.3:3006257-3006276 | None:intergenic | 25.0% |
| ! | TCATGACTTGAATTATTTGA+AGG | - | chr5.3:3007059-3007078 | None:intergenic | 25.0% |
| ! | TGTGTATCATTGTATCTATA+TGG | - | chr5.3:3007212-3007231 | None:intergenic | 25.0% |
| ! | TTACCATTAATCAATCACTT+AGG | - | chr5.3:3006818-3006837 | None:intergenic | 25.0% |
| !! | ACAAACCATTTATGTTGATT+GGG | + | chr5.3:3008149-3008168 | MS.gene22282:CDS | 25.0% |
| !! | CATTTTATCATGTGAAGATT+TGG | + | chr5.3:3008016-3008035 | MS.gene22282:intron | 25.0% |
| !! | CTACTTGTAATTTTGTAAAC+AGG | + | chr5.3:3007843-3007862 | MS.gene22282:intron | 25.0% |
| !! | TGAATCAGAAGATCTATTTT+CGG | + | chr5.3:3006926-3006945 | MS.gene22282:intron | 25.0% |
| !! | TTTGAAGTAGGAAATGTATA+TGG | + | chr5.3:3006024-3006043 | MS.gene22282:intron | 25.0% |
| !!! | AATTGCGTGATTTTGATTTT+AGG | + | chr5.3:3005691-3005710 | MS.gene22282:intron | 25.0% |
| !!! | ATTGCGTGATTTTGATTTTA+GGG | + | chr5.3:3005692-3005711 | MS.gene22282:intron | 25.0% |
| !!! | CTGATAAGCATTTTGATTTT+AGG | + | chr5.3:3008047-3008066 | MS.gene22282:intron | 25.0% |
| !!! | CTTTTTTATTGTTAACCTTC+TGG | + | chr5.3:3006854-3006873 | MS.gene22282:intron | 25.0% |
| !!! | GTATAGATTGACTAGTTTTA+TGG | + | chr5.3:3005966-3005985 | MS.gene22282:intron | 25.0% |
| !!! | TATTGAAGGATGGATTATTT+TGG | + | chr5.3:3005749-3005768 | MS.gene22282:CDS | 25.0% |
| !!! | TTGATTTTTAAAGGATGTAG+TGG | + | chr5.3:3007654-3007673 | MS.gene22282:intron | 25.0% |
| AACAAAACCCTCATAATTTG+GGG | - | chr5.3:3006383-3006402 | None:intergenic | 30.0% | |
| AAGCCTAAGTGATTGATTAA+TGG | + | chr5.3:3006812-3006831 | MS.gene22282:intron | 30.0% | |
| AAGTAGGAAATGTATATGGA+CGG | + | chr5.3:3006028-3006047 | MS.gene22282:intron | 30.0% | |
| AATACAAAATCTCCCTCATT+TGG | + | chr5.3:3006662-3006681 | MS.gene22282:intron | 30.0% | |
| AGAACTCAAAATTGTATTCG+AGG | - | chr5.3:3006360-3006379 | None:intergenic | 30.0% | |
| ATACAAAATCTCCCTCATTT+GGG | + | chr5.3:3006663-3006682 | MS.gene22282:intron | 30.0% | |
| ATTAATCTATGTTGTTGGGA+GGG | - | chr5.3:3006253-3006272 | None:intergenic | 30.0% | |
| CACAAACCATTTATGTTGAT+TGG | + | chr5.3:3008148-3008167 | MS.gene22282:CDS | 30.0% | |
| CGATTCTCATTTCATTCTAA+TGG | - | chr5.3:3007155-3007174 | None:intergenic | 30.0% | |
| TATTAATCTATGTTGTTGGG+AGG | - | chr5.3:3006254-3006273 | None:intergenic | 30.0% | |
| TGAGATGATAACTTCAGTTA+AGG | - | chr5.3:3007403-3007422 | None:intergenic | 30.0% | |
| TGGATGAAATAGAAGACATT+GGG | + | chr5.3:3006606-3006625 | MS.gene22282:intron | 30.0% | |
| TTGGGAGTTTGAGAAATATA+TGG | - | chr5.3:3006789-3006808 | None:intergenic | 30.0% | |
| ! | AAAATTTGATAACCATGCTC+CGG | - | chr5.3:3006907-3006926 | None:intergenic | 30.0% |
| ! | AATCTAAGGGTATGATTGTA+GGG | + | chr5.3:3006059-3006078 | MS.gene22282:intron | 30.0% |
| ! | TAATCTAAGGGTATGATTGT+AGG | + | chr5.3:3006058-3006077 | MS.gene22282:intron | 30.0% |
| ! | TTTTTGTAGCTATTGAAGGA+TGG | + | chr5.3:3005739-3005758 | MS.gene22282:intron | 30.0% |
| !! | GAGAATCGTTTTAGTGAATT+GGG | + | chr5.3:3007167-3007186 | MS.gene22282:intron | 30.0% |
| !! | TGAGAATCGTTTTAGTGAAT+TGG | + | chr5.3:3007166-3007185 | MS.gene22282:intron | 30.0% |
| !!! | GATAGAAAGTGTTTTGAAGT+AGG | + | chr5.3:3006012-3006031 | MS.gene22282:intron | 30.0% |
| AAAAAAAAGGAAGGAGCAAG+TGG | + | chr5.3:3006586-3006605 | MS.gene22282:intron | 35.0% | |
| AAAAAAAAGGAAGGAGCAAG+TGG | - | chr5.3:3006605-3006586 | None:intergenic | 35.0% | |
| AAACTCCACATCATGGTTAT+CGG | - | chr5.3:3007304-3007323 | None:intergenic | 35.0% | |
| AAATGTATATGGACGGGTAA+TGG | + | chr5.3:3006035-3006054 | MS.gene22282:intron | 35.0% | |
| AACTAGTCAATCTATACGAG+TGG | - | chr5.3:3005963-3005982 | None:intergenic | 35.0% | |
| ACAATGATACACACTAACTG+AGG | + | chr5.3:3007219-3007238 | MS.gene22282:intron | 35.0% | |
| ACACTAACTGAGGTTATTGA+TGG | + | chr5.3:3007229-3007248 | MS.gene22282:intron | 35.0% | |
| ACTAGTCAATCTATACGAGT+GGG | - | chr5.3:3005962-3005981 | None:intergenic | 35.0% | |
| ACTCAAAATTGTATTCGAGG+AGG | - | chr5.3:3006357-3006376 | None:intergenic | 35.0% | |
| AGTAGGAAATGTATATGGAC+GGG | + | chr5.3:3006029-3006048 | MS.gene22282:intron | 35.0% | |
| AGTGAATTGGGATTCAAGAT+GGG | + | chr5.3:3007179-3007198 | MS.gene22282:intron | 35.0% | |
| ATGAAATAGAAGACATTGGG+AGG | + | chr5.3:3006609-3006628 | MS.gene22282:intron | 35.0% | |
| ATGAGTCAGTTAGAAGAAAC+AGG | + | chr5.3:3008193-3008212 | MS.gene22282:CDS | 35.0% | |
| CACTAACTGAGGTTATTGAT+GGG | + | chr5.3:3007230-3007249 | MS.gene22282:intron | 35.0% | |
| CTCAAAATTGTATTCGAGGA+GGG | - | chr5.3:3006356-3006375 | None:intergenic | 35.0% | |
| GAAAGCCCAATCAACATAAA+TGG | - | chr5.3:3008157-3008176 | None:intergenic | 35.0% | |
| GAGATGGCAGAAAATTTACT+TGG | - | chr5.3:3007881-3007900 | None:intergenic | 35.0% | |
| GGAAAGTTAAGTCCAACTAA+CGG | - | chr5.3:3007436-3007455 | None:intergenic | 35.0% | |
| GTGGATGAAATAGAAGACAT+TGG | + | chr5.3:3006605-3006624 | MS.gene22282:intron | 35.0% | |
| TACAAAATCTCCCTCATTTG+GGG | + | chr5.3:3006664-3006683 | MS.gene22282:intron | 35.0% | |
| TAGTGAATTGGGATTCAAGA+TGG | + | chr5.3:3007178-3007197 | MS.gene22282:intron | 35.0% | |
| TATGAACATAGAAACGGAGA+TGG | - | chr5.3:3007897-3007916 | None:intergenic | 35.0% | |
| TGAAATAGAAGACATTGGGA+GGG | + | chr5.3:3006610-3006629 | MS.gene22282:intron | 35.0% | |
| TTAATCTATGTTGTTGGGAG+GGG | - | chr5.3:3006252-3006271 | None:intergenic | 35.0% | |
| ! | AATATCAAGGTACCTTTCCT+CGG | - | chr5.3:3006884-3006903 | None:intergenic | 35.0% |
| ! | CAGAATGCTTTTGGTGAATA+TGG | + | chr5.3:3005810-3005829 | MS.gene22282:CDS | 35.0% |
| ! | CATATCTTTTCACCGTTAGT+TGG | + | chr5.3:3007421-3007440 | MS.gene22282:intron | 35.0% |
| ! | CTAAGGCTTTGTCTTTGTTT+GGG | - | chr5.3:3006522-3006541 | None:intergenic | 35.0% |
| ! | CTTCTAACTGACTCATTGAT+AGG | - | chr5.3:3008189-3008208 | None:intergenic | 35.0% |
| ! | GAATTATAGCCAGCTTTTGT+CGG | - | chr5.3:3007113-3007132 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGGGAGTTTAGA+GGG | - | chr5.3:3006511-3006530 | None:intergenic | 35.0% |
| !! | CAATCACTTAGGCTTTGTTT+GGG | - | chr5.3:3006807-3006826 | None:intergenic | 35.0% |
| !! | GATGATTTGCAGAATGCTTT+TGG | + | chr5.3:3005801-3005820 | MS.gene22282:CDS | 35.0% |
| !! | TCAATCACTTAGGCTTTGTT+TGG | - | chr5.3:3006808-3006827 | None:intergenic | 35.0% |
| !!! | ACCTTTGGTTTTTTTGGGAA+CGG | - | chr5.3:3005535-3005554 | None:intergenic | 35.0% |
| !!! | GCTGTTTTTGTAGCTATTGA+AGG | + | chr5.3:3005735-3005754 | MS.gene22282:intron | 35.0% |
| !!! | TATGATTGTAGGGTTTTGGA+GGG | + | chr5.3:3006069-3006088 | MS.gene22282:intron | 35.0% |
| AAACTCCCAAACAAAGCCTA+AGG | - | chr5.3:3006818-3006799 | None:intergenic | 40.0% | |
| ACAAAATCTCCCTCATTTGG+GGG | + | chr5.3:3006665-3006684 | MS.gene22282:intron | 40.0% | |
| AGAGTTACGGTTAGAGGAAT+CGG | - | chr5.3:3005577-3005596 | None:intergenic | 40.0% | |
| AGATACCGATAACCATGATG+TGG | + | chr5.3:3007296-3007315 | MS.gene22282:intron | 40.0% | |
| AGGAAATAGAGGAGTTTGAG+AGG | - | chr5.3:3006439-3006458 | None:intergenic | 40.0% | |
| ATTGAGAGGTAGGTAAAGTG+AGG | + | chr5.3:3007325-3007344 | MS.gene22282:intron | 40.0% | |
| CAGTTTCAGAAACTGCAGAT+TGG | + | chr5.3:3007940-3007959 | MS.gene22282:intron | 40.0% | |
| CCAAACAAAGACAAAGCCTT+AGG | + | chr5.3:3006520-3006539 | MS.gene22282:intron | 40.0% | |
| CCTAACAAGTAACTGTGTGT+AGG | + | chr5.3:3007695-3007714 | MS.gene22282:intron | 40.0% | |
| CCTACACACAGTTACTTGTT+AGG | - | chr5.3:3007698-3007717 | None:intergenic | 40.0% | |
| CTCAATCAAACTCCACATCA+TGG | - | chr5.3:3007311-3007330 | None:intergenic | 40.0% | |
| GAAATAGAAGACATTGGGAG+GGG | + | chr5.3:3006611-3006630 | MS.gene22282:intron | 40.0% | |
| GAAATAGAGGAGTTTGAGAG+GGG | - | chr5.3:3006437-3006456 | None:intergenic | 40.0% | |
| GAGTTCTCCCCAAATTATGA+GGG | + | chr5.3:3006373-3006392 | MS.gene22282:intron | 40.0% | |
| GCACCTTAACAAAACCAGTA+CGG | - | chr5.3:3005869-3005888 | None:intergenic | 40.0% | |
| GGAAATAGAGGAGTTTGAGA+GGG | - | chr5.3:3006438-3006457 | None:intergenic | 40.0% | |
| TCATGAATCAAATGGCAAGC+TGG | + | chr5.3:3007073-3007092 | MS.gene22282:intron | 40.0% | |
| TCCATTTCATGTCTCAGTCA+TGG | + | chr5.3:3007453-3007472 | MS.gene22282:intron | 40.0% | |
| TCCGTTCCCAAAAAAACCAA+AGG | + | chr5.3:3005531-3005550 | MS.gene22282:CDS | 40.0% | |
| TGAGTTCTCCCCAAATTATG+AGG | + | chr5.3:3006372-3006391 | MS.gene22282:intron | 40.0% | |
| TGATGTGGAGTTTGATTGAG+AGG | + | chr5.3:3007311-3007330 | MS.gene22282:intron | 40.0% | |
| TGGGGATACAAACATCTTTG+AGG | - | chr5.3:3005651-3005670 | None:intergenic | 40.0% | |
| ! | AGGGTATGATTGTAGGGTTT+TGG | + | chr5.3:3006065-3006084 | MS.gene22282:intron | 40.0% |
| ! | ATATCAAGGTACCTTTCCTC+GGG | - | chr5.3:3006883-3006902 | None:intergenic | 40.0% |
| ! | CACACAGTTACTTGTTAGGA+AGG | - | chr5.3:3007694-3007713 | None:intergenic | 40.0% |
| ! | CCTAAGGCTTTGTCTTTGTT+TGG | - | chr5.3:3006523-3006542 | None:intergenic | 40.0% |
| ! | GACGGGTAATGGTAATCTAA+GGG | + | chr5.3:3006046-3006065 | MS.gene22282:intron | 40.0% |
| ! | GTCTTTGTTTGGGAGTTTAG+AGG | - | chr5.3:3006512-3006531 | None:intergenic | 40.0% |
| ! | TACAAACATCTTTGAGGACC+AGG | - | chr5.3:3005645-3005664 | None:intergenic | 40.0% |
| ! | TTGACCTCAAGCTGTTACTT+TGG | + | chr5.3:3007509-3007528 | MS.gene22282:intron | 40.0% |
| !! | ACAAAGCCTTAGGCTTTGTT+TGG | + | chr5.3:3006530-3006549 | MS.gene22282:intron | 40.0% |
| !! | CAAAGCCTTAGGCTTTGTTT+GGG | + | chr5.3:3006531-3006550 | MS.gene22282:intron | 40.0% |
| !! | GCTTTGTTTGGGAGTTTAGA+GGG | + | chr5.3:3006542-3006561 | MS.gene22282:intron | 40.0% |
| !! | GGAAAGGTACCTTGATATTC+CGG | + | chr5.3:3006885-3006904 | MS.gene22282:intron | 40.0% |
| !! | GTATGATTGTAGGGTTTTGG+AGG | + | chr5.3:3006068-3006087 | MS.gene22282:intron | 40.0% |
| !! | TGACCTCAAGCTGTTACTTT+GGG | + | chr5.3:3007510-3007529 | MS.gene22282:intron | 40.0% |
| !!! | ATGATTGTAGGGTTTTGGAG+GGG | + | chr5.3:3006070-3006089 | MS.gene22282:intron | 40.0% |
| !!! | GGATGGATTATTTTGGTGAC+TGG | + | chr5.3:3005756-3005775 | MS.gene22282:CDS | 40.0% |
| !!! | TATTCGAGGAGGGTTTTGAA+GGG | - | chr5.3:3006346-3006365 | None:intergenic | 40.0% |
| !!! | TTTTGAGTTCCCCCAAATGA+GGG | - | chr5.3:3006677-3006696 | None:intergenic | 40.0% |
| !!! | TTTTTGAGTTCCCCCAAATG+AGG | - | chr5.3:3006678-3006697 | None:intergenic | 40.0% |
| !!! | TTTTTTGGGAACGGAAGTGA+TGG | - | chr5.3:3005526-3005545 | None:intergenic | 40.0% |
| AAAAAGGAAGGAGCAAGTGG+AGG | - | chr5.3:3006608-3006589 | None:intergenic | 45.0% | |
| AACCATGCTCCGGAATATCA+AGG | - | chr5.3:3006897-3006916 | None:intergenic | 45.0% | |
| AACCCCAAAGTAACAGCTTG+AGG | - | chr5.3:3007516-3007535 | None:intergenic | 45.0% | |
| AATCAGCGAGACGAGAGTTA+CGG | - | chr5.3:3005590-3005609 | None:intergenic | 45.0% | |
| CAATGTTGACCGACAAAAGC+TGG | + | chr5.3:3007101-3007120 | MS.gene22282:intron | 45.0% | |
| CCCAAAAAAACCAAAGGTCG+CGG | + | chr5.3:3005537-3005556 | MS.gene22282:CDS | 45.0% | |
| GAAATCCAAAGCTTCTCCGT+CGG | - | chr5.3:3005421-3005440 | None:intergenic | 45.0% | |
| GATTGAATATGAGCGCTCTG+AGG | + | chr5.3:3008080-3008099 | MS.gene22282:CDS | 45.0% | |
| GCCATGACTGAGACATGAAA+TGG | - | chr5.3:3007457-3007476 | None:intergenic | 45.0% | |
| GGAGTTTAGAGGGAAGTGAA+GGG | + | chr5.3:3006552-3006571 | MS.gene22282:intron | 45.0% | |
| GTGGAGTTTGATTGAGAGGT+AGG | + | chr5.3:3007315-3007334 | MS.gene22282:intron | 45.0% | |
| TACCTTGATATTCCGGAGCA+TGG | + | chr5.3:3006892-3006911 | MS.gene22282:intron | 45.0% | |
| TAGAGGAATCGGAATCCTGA+CGG | - | chr5.3:3005566-3005585 | None:intergenic | 45.0% | |
| TCCAGCATGGGATTGAACTT+GGG | + | chr5.3:3007359-3007378 | MS.gene22282:intron | 45.0% | |
| TCCATCAAGTCATCTTCCTC+TGG | - | chr5.3:3005447-3005466 | None:intergenic | 45.0% | |
| TCCCATGCTGGAACAATCTT+CGG | - | chr5.3:3007351-3007370 | None:intergenic | 45.0% | |
| TGAGATCAAAGCAGCGAAAG+TGG | - | chr5.3:3007778-3007797 | None:intergenic | 45.0% | |
| TTCCAGCATGGGATTGAACT+TGG | + | chr5.3:3007358-3007377 | MS.gene22282:intron | 45.0% | |
| TTCGATACTCTCACTGCTGA+GGG | + | chr5.3:3005615-3005634 | MS.gene22282:CDS | 45.0% | |
| TTGAATCTTGATCGCCGTAC+TGG | + | chr5.3:3005852-3005871 | MS.gene22282:CDS | 45.0% | |
| TTTCGATACTCTCACTGCTG+AGG | + | chr5.3:3005614-3005633 | MS.gene22282:CDS | 45.0% | |
| TTTGGGAGTTTAGAGGGCAA+GGG | - | chr5.3:3006505-3006524 | None:intergenic | 45.0% | |
| ! | GATGACTTGATGGACGAAGA+AGG | + | chr5.3:3005453-3005472 | MS.gene22282:CDS | 45.0% |
| ! | GATTTGAGTTTGGGATGTGG+AGG | - | chr5.3:3005501-3005520 | None:intergenic | 45.0% |
| ! | GGACGGGTAATGGTAATCTA+AGG | + | chr5.3:3006045-3006064 | MS.gene22282:intron | 45.0% |
| ! | TATGTTGTTGGGAGGGGTTT+TGG | - | chr5.3:3006246-3006265 | None:intergenic | 45.0% |
| ! | TTTGGTGACTGGTGTACATG+AGG | + | chr5.3:3005767-3005786 | MS.gene22282:CDS | 45.0% |
| !! | AGCAGTGAGAGTATCGAAAC+CGG | - | chr5.3:3005613-3005632 | None:intergenic | 45.0% |
| !! | AGTGATGGCGGATTTGAGTT+TGG | - | chr5.3:3005511-3005530 | None:intergenic | 45.0% |
| !! | CTGTTACTTTGGGGTTCAGA+TGG | + | chr5.3:3007520-3007539 | MS.gene22282:intron | 45.0% |
| !! | GACCTCAAGCTGTTACTTTG+GGG | + | chr5.3:3007511-3007530 | MS.gene22282:intron | 45.0% |
| !! | GGCTTTGTTTGGGAGTTTAG+AGG | + | chr5.3:3006541-3006560 | MS.gene22282:intron | 45.0% |
| !! | GTATTCGAGGAGGGTTTTGA+AGG | - | chr5.3:3006347-3006366 | None:intergenic | 45.0% |
| !! | GTGATGGCGGATTTGAGTTT+GGG | - | chr5.3:3005510-3005529 | None:intergenic | 45.0% |
| !!! | ACCGCGACCTTTGGTTTTTT+TGG | - | chr5.3:3005541-3005560 | None:intergenic | 45.0% |
| !!! | AGGAGGGTTTTGAAGGGATT+TGG | - | chr5.3:3006340-3006359 | None:intergenic | 45.0% |
| !!! | CCGCGACCTTTGGTTTTTTT+GGG | - | chr5.3:3005540-3005559 | None:intergenic | 45.0% |
| !!! | GGGTTTTGAAGGGATTTGGA+AGG | - | chr5.3:3006336-3006355 | None:intergenic | 45.0% |
| !!! | TCGCCGTACTGGTTTTGTTA+AGG | + | chr5.3:3005863-3005882 | MS.gene22282:CDS | 45.0% |
| !!! | TGTATATAAATTTTATAAAA+TGG | + | chr5.3:3007561-3007580 | MS.gene22282:intron | 5.0% |
| ACCCAAGTTCAATCCCATGC+TGG | - | chr5.3:3007363-3007382 | None:intergenic | 50.0% | |
| ATAGAAGACATTGGGAGGGG+AGG | + | chr5.3:3006614-3006633 | MS.gene22282:intron | 50.0% | |
| ATAGAGGAGTTTGAGAGGGG+AGG | - | chr5.3:3006434-3006453 | None:intergenic | 50.0% | |
| GAGACGAGAGTTACGGTTAG+AGG | - | chr5.3:3005583-3005602 | None:intergenic | 50.0% | |
| GCCAGAGGAAGATGACTTGA+TGG | + | chr5.3:3005443-3005462 | MS.gene22282:CDS | 50.0% | |
| GCCGAAGATTGTTCCAGCAT+GGG | + | chr5.3:3007347-3007366 | MS.gene22282:intron | 50.0% | |
| GGAGCAAGTGGAGGAAATAG+AGG | - | chr5.3:3006450-3006469 | None:intergenic | 50.0% | |
| GGGAGTTTAGAGGGAAGTGA+AGG | + | chr5.3:3006551-3006570 | MS.gene22282:intron | 50.0% | |
| GTTGATTGGGCTTTCAGCAG+TGG | + | chr5.3:3008162-3008181 | MS.gene22282:CDS | 50.0% | |
| GTTTGGGAGTTTAGAGGGCA+AGG | - | chr5.3:3006506-3006525 | None:intergenic | 50.0% | |
| TAGAAGACATTGGGAGGGGA+GGG | + | chr5.3:3006615-3006634 | MS.gene22282:intron | 50.0% | |
| TAGAGGAGTTTGAGAGGGGA+GGG | - | chr5.3:3006433-3006452 | None:intergenic | 50.0% | |
| TTTGGGAACGGAAGTGATGG+CGG | - | chr5.3:3005523-3005542 | None:intergenic | 50.0% | |
| ! | GCGGATTTGAGTTTGGGATG+TGG | - | chr5.3:3005504-3005523 | None:intergenic | 50.0% |
| !! | AACTCTCGTCTCGCTGATTC+CGG | + | chr5.3:3005591-3005610 | MS.gene22282:CDS | 50.0% |
| !! | AGCTTTGGATTTCGAGCCAG+AGG | + | chr5.3:3005428-3005447 | MS.gene22282:CDS | 50.0% |
| !! | GTTAACCTTCTGGTTTCCCG+AGG | + | chr5.3:3006864-3006883 | MS.gene22282:intron | 50.0% |
| !!! | ATTGTAGGGTTTTGGAGGGG+AGG | + | chr5.3:3006073-3006092 | MS.gene22282:intron | 50.0% |
| !!! | TTGTAGGGTTTTGGAGGGGA+GGG | + | chr5.3:3006074-3006093 | MS.gene22282:intron | 50.0% |
| AGTTTGAGAGGGGAGGGCTT+TGG | - | chr5.3:3006427-3006446 | None:intergenic | 55.0% | |
| ATCCAAAGCTTCTCCGTCGG+CGG | - | chr5.3:3005418-3005437 | None:intergenic | 55.0% | |
| CCTTTCCTCGGGAAACCAGA+AGG | - | chr5.3:3006872-3006891 | None:intergenic | 55.0% | |
| GATACTCTCACTGCTGAGGG+TGG | + | chr5.3:3005618-3005637 | MS.gene22282:CDS | 55.0% | |
| GGAGTTTAGAGGGCAAGGGA+GGG | - | chr5.3:3006501-3006520 | None:intergenic | 55.0% | |
| GGCCGAAGATTGTTCCAGCA+TGG | + | chr5.3:3007346-3007365 | MS.gene22282:intron | 55.0% | |
| GGGATGTGGAGGAGAAGCTT+CGG | - | chr5.3:3005490-3005509 | None:intergenic | 55.0% | |
| GTTTGAGAGGGGAGGGCTTT+GGG | - | chr5.3:3006426-3006445 | None:intergenic | 55.0% | |
| TTTGAGAGGGGAGGGCTTTG+GGG | - | chr5.3:3006425-3006444 | None:intergenic | 55.0% | |
| ! | ATACTGCAGGGAGTGCAGTG+AGG | - | chr5.3:3007587-3007606 | None:intergenic | 55.0% |
| ! | ATTGGGAGGGGAGGGCTTTT+GGG | + | chr5.3:3006623-3006642 | MS.gene22282:intron | 55.0% |
| ! | TAGAGGGCAAGGGAGGGTTT+TGG | - | chr5.3:3006495-3006514 | None:intergenic | 55.0% |
| !! | ATGAGCGCTCTGAGGAAGCT+CGG | + | chr5.3:3008088-3008107 | MS.gene22282:CDS | 55.0% |
| !! | CCTTCTGGTTTCCCGAGGAA+AGG | + | chr5.3:3006869-3006888 | MS.gene22282:intron | 55.0% |
| !! | GTTGTTGGGAGGGGTTTTGG+AGG | - | chr5.3:3006243-3006262 | None:intergenic | 55.0% |
| !!! | TGTAGGGTTTTGGAGGGGAG+GGG | + | chr5.3:3006075-3006094 | MS.gene22282:intron | 55.0% |
| CAAAGGTCGCGGTTTCCGTC+AGG | + | chr5.3:3005548-3005567 | MS.gene22282:CDS | 60.0% | |
| CTGACGGAAACCGCGACCTT+TGG | - | chr5.3:3005550-3005569 | None:intergenic | 60.0% | |
| GGGAGTTTAGAGGGCAAGGG+AGG | - | chr5.3:3006502-3006521 | None:intergenic | 60.0% | |
| ! | CATTGGGAGGGGAGGGCTTT+TGG | + | chr5.3:3006622-3006641 | MS.gene22282:intron | 60.0% |
| ! | TTGAGAGGGGAGGGCTTTGG+GGG | - | chr5.3:3006424-3006443 | None:intergenic | 60.0% |
| ! | TTGGGAGGGGAGGGCTTTTG+GGG | + | chr5.3:3006624-3006643 | MS.gene22282:intron | 60.0% |
| !!! | GTAGGGTTTTGGAGGGGAGG+GGG | + | chr5.3:3006076-3006095 | MS.gene22282:intron | 60.0% |
| CTCACTGCTGAGGGTGGTCC+TGG | + | chr5.3:3005624-3005643 | MS.gene22282:CDS | 65.0% | |
| !! | ATGCAAGGAAGCGCCGCCGA+CGG | + | chr5.3:3005402-3005421 | MS.gene22282:CDS | 65.0% |
| !! | TGAGAGGGGAGGGCTTTGGG+GGG | - | chr5.3:3006423-3006442 | None:intergenic | 65.0% |
| !! | TTTTGGAGGGGAGGGGGTGG+AGG | + | chr5.3:3006082-3006101 | MS.gene22282:intron | 65.0% |
| CGCCGCCGACGGAGAAGCTT+TGG | + | chr5.3:3005413-3005432 | MS.gene22282:CDS | 70.0% | |
| !!! | GGGTTTTGGAGGGGAGGGGG+TGG | + | chr5.3:3006079-3006098 | MS.gene22282:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3005402 | 3008218 | 3005402 | ID=MS.gene22282 |
| chr5.3 | mRNA | 3005402 | 3008218 | 3005402 | ID=MS.gene22282.t1;Parent=MS.gene22282 |
| chr5.3 | exon | 3005402 | 3005657 | 3005402 | ID=MS.gene22282.t1.exon1;Parent=MS.gene22282.t1 |
| chr5.3 | CDS | 3005402 | 3005657 | 3005402 | ID=cds.MS.gene22282.t1;Parent=MS.gene22282.t1 |
| chr5.3 | exon | 3005748 | 3005884 | 3005748 | ID=MS.gene22282.t1.exon2;Parent=MS.gene22282.t1 |
| chr5.3 | CDS | 3005748 | 3005884 | 3005748 | ID=cds.MS.gene22282.t1;Parent=MS.gene22282.t1 |
| chr5.3 | exon | 3008069 | 3008218 | 3008069 | ID=MS.gene22282.t1.exon3;Parent=MS.gene22282.t1 |
| chr5.3 | CDS | 3008069 | 3008218 | 3008069 | ID=cds.MS.gene22282.t1;Parent=MS.gene22282.t1 |
| Gene Sequence |
| Protein sequence |
