Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22300.t1 | XP_003610978.1 | 98.7 | 611 | 8 | 0 | 1 | 611 | 1 | 611 | 0.00E+00 | 1181.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22300.t1 | Q39828 | 90.7 | 611 | 56 | 1 | 1 | 611 | 1 | 610 | 0.0e+00 | 1100.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22300.t1 | G7K9B1 | 98.7 | 611 | 8 | 0 | 1 | 611 | 1 | 611 | 0.0e+00 | 1181.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056130 | MS.gene22300 | PPI |
| MS.gene022695 | MS.gene22300 | PPI |
| MS.gene22300 | MS.gene39347 | PPI |
| MS.gene39665 | MS.gene22300 | PPI |
| MS.gene94912 | MS.gene22300 | PPI |
| MS.gene068345 | MS.gene22300 | PPI |
| MS.gene26060 | MS.gene22300 | PPI |
| MS.gene22300 | MS.gene010879 | PPI |
| MS.gene59547 | MS.gene22300 | PPI |
| MS.gene050237 | MS.gene22300 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22300.t1 | MTR_5g009150 | 98.691 | 611 | 8 | 0 | 1 | 611 | 1 | 611 | 0.0 | 1243 |
| MS.gene22300.t1 | MTR_8g099550 | 90.180 | 611 | 59 | 1 | 1 | 611 | 1 | 610 | 0.0 | 1156 |
| MS.gene22300.t1 | MTR_8g027675 | 81.281 | 609 | 112 | 2 | 1 | 609 | 1 | 607 | 0.0 | 1052 |
| MS.gene22300.t1 | MTR_1g032550 | 67.101 | 614 | 194 | 2 | 1 | 609 | 4 | 614 | 0.0 | 890 |
| MS.gene22300.t1 | MTR_8g105580 | 66.559 | 619 | 190 | 4 | 1 | 609 | 4 | 615 | 0.0 | 890 |
| MS.gene22300.t1 | MTR_7g451010 | 67.810 | 612 | 194 | 2 | 1 | 609 | 4 | 615 | 0.0 | 883 |
| MS.gene22300.t1 | MTR_4g098920 | 67.267 | 611 | 194 | 3 | 1 | 610 | 1 | 606 | 0.0 | 883 |
| MS.gene22300.t1 | MTR_8g009510 | 65.665 | 632 | 194 | 2 | 1 | 609 | 4 | 635 | 0.0 | 881 |
| MS.gene22300.t1 | MTR_8g105580 | 67.530 | 579 | 171 | 4 | 1 | 569 | 4 | 575 | 0.0 | 842 |
| MS.gene22300.t1 | MTR_8g009510 | 65.085 | 527 | 163 | 1 | 104 | 609 | 2 | 528 | 0.0 | 729 |
| MS.gene22300.t1 | MTR_2g009690 | 38.833 | 497 | 284 | 4 | 4 | 492 | 24 | 508 | 2.77e-107 | 342 |
| MS.gene22300.t1 | MTR_4g093750 | 38.632 | 497 | 285 | 4 | 4 | 492 | 15 | 499 | 2.36e-104 | 332 |
| MS.gene22300.t1 | MTR_4g093750 | 38.353 | 498 | 287 | 4 | 4 | 492 | 15 | 501 | 2.58e-102 | 327 |
| MS.gene22300.t1 | MTR_4g134680 | 29.167 | 480 | 302 | 11 | 37 | 496 | 37 | 498 | 1.33e-56 | 204 |
| MS.gene22300.t1 | MTR_4g134680 | 29.167 | 480 | 302 | 11 | 37 | 496 | 37 | 498 | 3.45e-56 | 204 |
| MS.gene22300.t1 | MTR_4g134680 | 29.167 | 480 | 302 | 11 | 37 | 496 | 37 | 498 | 9.79e-56 | 203 |
| MS.gene22300.t1 | MTR_4g030140 | 29.344 | 518 | 324 | 13 | 1 | 496 | 4 | 501 | 1.07e-55 | 203 |
| MS.gene22300.t1 | MTR_8g087770 | 35.986 | 289 | 148 | 10 | 35 | 314 | 68 | 328 | 3.67e-33 | 135 |
| MS.gene22300.t1 | MTR_8g087750 | 35.294 | 289 | 175 | 6 | 35 | 321 | 71 | 349 | 4.71e-33 | 135 |
| MS.gene22300.t1 | MTR_4g134680 | 34.328 | 201 | 132 | 0 | 296 | 496 | 1 | 201 | 7.55e-33 | 134 |
| MS.gene22300.t1 | MTR_8g463270 | 32.420 | 219 | 118 | 6 | 9 | 215 | 31 | 231 | 1.53e-18 | 90.5 |
| MS.gene22300.t1 | MTR_4g022340 | 25.468 | 267 | 148 | 9 | 37 | 289 | 31 | 260 | 8.42e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22300.t1 | AT5G42080 | 85.925 | 611 | 85 | 1 | 1 | 611 | 1 | 610 | 0.0 | 1118 |
| MS.gene22300.t1 | AT5G42080 | 85.925 | 611 | 85 | 1 | 1 | 611 | 1 | 610 | 0.0 | 1118 |
| MS.gene22300.t1 | AT5G42080 | 85.270 | 611 | 83 | 2 | 1 | 611 | 1 | 604 | 0.0 | 1101 |
| MS.gene22300.t1 | AT3G61760 | 81.209 | 612 | 112 | 3 | 1 | 611 | 1 | 610 | 0.0 | 1050 |
| MS.gene22300.t1 | AT3G61760 | 82.281 | 570 | 98 | 3 | 1 | 569 | 1 | 568 | 0.0 | 990 |
| MS.gene22300.t1 | AT3G60190 | 67.205 | 619 | 193 | 2 | 1 | 609 | 4 | 622 | 0.0 | 902 |
| MS.gene22300.t1 | AT1G14830 | 67.210 | 613 | 194 | 3 | 1 | 609 | 4 | 613 | 0.0 | 887 |
| MS.gene22300.t1 | AT2G44590 | 63.993 | 611 | 217 | 2 | 1 | 609 | 1 | 610 | 0.0 | 850 |
| MS.gene22300.t1 | AT2G44590 | 61.211 | 611 | 217 | 3 | 1 | 609 | 1 | 593 | 0.0 | 807 |
| MS.gene22300.t1 | AT2G44590 | 61.111 | 612 | 217 | 4 | 1 | 609 | 1 | 594 | 0.0 | 803 |
| MS.gene22300.t1 | AT5G42080 | 88.140 | 430 | 50 | 1 | 1 | 430 | 1 | 429 | 0.0 | 801 |
| MS.gene22300.t1 | AT3G61760 | 82.735 | 446 | 74 | 3 | 1 | 445 | 1 | 444 | 0.0 | 781 |
| MS.gene22300.t1 | AT2G14120 | 36.310 | 504 | 295 | 7 | 3 | 492 | 20 | 511 | 1.42e-95 | 309 |
| MS.gene22300.t1 | AT4G33650 | 37.177 | 503 | 291 | 6 | 3 | 492 | 36 | 526 | 2.69e-95 | 310 |
| MS.gene22300.t1 | AT4G33650 | 37.177 | 503 | 291 | 6 | 3 | 492 | 36 | 526 | 3.25e-95 | 310 |
| MS.gene22300.t1 | AT2G14120 | 36.310 | 504 | 295 | 7 | 3 | 492 | 20 | 511 | 4.18e-95 | 309 |
| MS.gene22300.t1 | AT2G14120 | 36.310 | 504 | 295 | 7 | 3 | 492 | 20 | 511 | 4.79e-95 | 308 |
| MS.gene22300.t1 | AT2G14120 | 34.709 | 533 | 293 | 9 | 3 | 492 | 20 | 540 | 1.12e-90 | 298 |
| MS.gene22300.t1 | AT1G59610 | 29.070 | 516 | 325 | 12 | 1 | 496 | 4 | 498 | 4.24e-58 | 210 |
| MS.gene22300.t1 | AT1G10290 | 29.651 | 516 | 322 | 12 | 1 | 496 | 4 | 498 | 1.43e-57 | 209 |
| MS.gene22300.t1 | AT1G60500 | 29.122 | 467 | 295 | 13 | 35 | 484 | 65 | 512 | 1.28e-38 | 151 |
| MS.gene22300.t1 | AT1G60530 | 45.989 | 187 | 97 | 3 | 35 | 220 | 62 | 245 | 3.91e-38 | 143 |
| MS.gene22300.t1 | AT1G53140 | 32.420 | 219 | 118 | 6 | 9 | 215 | 47 | 247 | 1.60e-18 | 90.5 |
Find 147 sgRNAs with CRISPR-Local
Find 425 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCCAAACTGTATAATTT+TGG | 0.194662 | 5.4:-3868719 | MS.gene22300:intron |
| TGATTGAATGCCTGGAATTT+TGG | 0.197982 | 5.4:+3867930 | None:intergenic |
| CTTGACAAAGATTGATCTTA+TGG | 0.222771 | 5.4:-3868412 | MS.gene22300:CDS |
| AATCTTCTCTAACTAGTATC+AGG | 0.267603 | 5.4:-3867242 | MS.gene22300:CDS |
| AACTCTACAGTTAGTTGATA+TGG | 0.293103 | 5.4:-3864527 | MS.gene22300:CDS |
| TCATTCCTTATTGAAGGATT+TGG | 0.305863 | 5.4:-3865192 | MS.gene22300:CDS |
| TGTCCAAGACATTGAGAATA+TGG | 0.305890 | 5.4:-3869035 | MS.gene22300:CDS |
| CAGAGAGCATGCACCGCTTT+AGG | 0.309765 | 5.4:-3870420 | MS.gene22300:CDS |
| AGCTCCCTGCTGCTCTAAAA+AGG | 0.313657 | 5.4:-3867377 | MS.gene22300:CDS |
| GTGAACCAAATCCTTCAATA+AGG | 0.321402 | 5.4:+3865187 | None:intergenic |
| GATATAATGATTCATATCTT+AGG | 0.330412 | 5.4:-3864417 | MS.gene22300:CDS |
| CCACTTCTTTACCCACTCTC+TGG | 0.331563 | 5.4:-3870380 | MS.gene22300:CDS |
| TGAGCAAGGTGTTTATATTC+AGG | 0.357508 | 5.4:+3868144 | None:intergenic |
| AGGCGACGGTATCCTTGTTC+TGG | 0.366529 | 5.4:+3867270 | None:intergenic |
| ATCTGACGGTTGAGTACTTT+CGG | 0.367672 | 5.4:-3864495 | MS.gene22300:CDS |
| GATCATTTCTTCATTGAGAT+AGG | 0.369007 | 5.4:-3864182 | MS.gene22300:CDS |
| TTGACACTCATTGATCTTCC+TGG | 0.372918 | 5.4:-3869192 | MS.gene22300:CDS |
| AGCTTTCAATGGAAAATATA+AGG | 0.374495 | 5.4:-3867338 | MS.gene22300:CDS |
| GATTCATATCTTAGGCGAAT+TGG | 0.383143 | 5.4:-3864409 | MS.gene22300:intron |
| ATAGCCAAAATTATACAGTT+TGG | 0.385630 | 5.4:+3868715 | None:intergenic |
| GCATCAACAGCTGCCTCGGC+AGG | 0.388371 | 5.4:+3867216 | None:intergenic |
| CAAAGAGACTAGAGTTATAC+AGG | 0.394137 | 5.4:-3863953 | MS.gene22300:CDS |
| CTAAAGCGGTGCATGCTCTC+TGG | 0.398907 | 5.4:+3870421 | None:intergenic |
| ATGATCAAGCAGGCTTCGTT+TGG | 0.399763 | 5.4:+3864199 | None:intergenic |
| CACTTCTTTACCCACTCTCT+GGG | 0.400454 | 5.4:-3870379 | MS.gene22300:CDS |
| TGAAACGGAACTGAGTCGTT+TGG | 0.402745 | 5.4:-3867881 | MS.gene22300:CDS |
| TGCTGGAGGGGAGATCTTAT+AGG | 0.403564 | 5.4:-3868275 | MS.gene22300:CDS |
| AAAGATTGATCTTATGGATA+AGG | 0.405255 | 5.4:-3868406 | MS.gene22300:CDS |
| GTTTGATAAGCAGCTTTCAA+TGG | 0.405259 | 5.4:-3867349 | MS.gene22300:CDS |
| TCAGGTTCATTCCTTATTGA+AGG | 0.409455 | 5.4:-3865198 | MS.gene22300:intron |
| CAATACCTTTGAAAGCATCT+TGG | 0.413437 | 5.4:+3868098 | None:intergenic |
| ACCCCTTCATCAGCTGCAAT+AGG | 0.414419 | 5.4:+3867853 | None:intergenic |
| GGGAAAATTGTATGCAATCA+TGG | 0.414475 | 5.4:-3867619 | MS.gene22300:CDS |
| GAAACGGAACTGAGTCGTTT+GGG | 0.415993 | 5.4:-3867880 | MS.gene22300:CDS |
| GTCGTCGGTGGCCAGAGCTC+TGG | 0.417952 | 5.4:-3870336 | MS.gene22300:CDS |
| GATTTCTTACCTCGCGGATC+AGG | 0.420695 | 5.4:-3870279 | MS.gene22300:intron |
| CTGATAAGTGATTGAATGCC+TGG | 0.422326 | 5.4:+3867922 | None:intergenic |
| TACCAACAGCCACCTTTGTA+AGG | 0.425231 | 5.4:+3869169 | None:intergenic |
| GAATATATACTGAGATGAAT+AGG | 0.429022 | 5.4:+3869715 | None:intergenic |
| TATTTAAAGAACACCTTGAT+GGG | 0.433353 | 5.4:-3867572 | MS.gene22300:CDS |
| ATGTCTTGGACAATACTATC+TGG | 0.433829 | 5.4:+3869046 | None:intergenic |
| TGACAATGGACAATTGACTT+TGG | 0.434885 | 5.4:+3864233 | None:intergenic |
| TCCGCGAGGTAAGAAATCTT+TGG | 0.439321 | 5.4:+3870284 | None:intergenic |
| GCCACCGACGACGGCGATAG+AGG | 0.442603 | 5.4:+3870347 | None:intergenic |
| CAGCTTCAAAAGATTGATGA+AGG | 0.443978 | 5.4:-3870133 | MS.gene22300:CDS |
| CTTAATATCTCAGCATTTGG+AGG | 0.445924 | 5.4:-3867965 | MS.gene22300:intron |
| ATATTTAAAGAACACCTTGA+TGG | 0.453382 | 5.4:-3867573 | MS.gene22300:CDS |
| GTGTTTATATTCAGGAGTAC+TGG | 0.455376 | 5.4:+3868152 | None:intergenic |
| AACAATCGCTGAACTTGAAA+CGG | 0.462061 | 5.4:-3867896 | MS.gene22300:CDS |
| GGGAAGAGAGTCCCAGAGAG+TGG | 0.471651 | 5.4:+3870368 | None:intergenic |
| TGATGTCGCAAGATCTTGAT+TGG | 0.476049 | 5.4:+3868684 | None:intergenic |
| GGCAACAACGCTCTCTAATA+CGG | 0.481079 | 5.4:+3870305 | None:intergenic |
| CTGAGATTGATTCCGCCGCT+TGG | 0.481281 | 5.4:-3863920 | MS.gene22300:CDS |
| AAGCCTATTGCAGCTGATGA+AGG | 0.484468 | 5.4:-3867856 | MS.gene22300:CDS |
| AAATGCAGCTTCTGATTCGC+TGG | 0.489388 | 5.4:-3864578 | MS.gene22300:CDS |
| TAAACACCTTGCTCACAGAA+TGG | 0.489562 | 5.4:-3868136 | MS.gene22300:CDS |
| CTTATAGGTTAAAGTATCCC+TGG | 0.489597 | 5.4:-3868260 | MS.gene22300:CDS |
| AAGATTGATCTTATGGATAA+GGG | 0.490791 | 5.4:-3868405 | MS.gene22300:CDS |
| CTGATTCGCTGGAACGAATG+AGG | 0.495204 | 5.4:-3864567 | MS.gene22300:CDS |
| TGTTCGTCCAGTCTCTCTAT+CGG | 0.498257 | 5.4:+3869756 | None:intergenic |
| CCCTCTATCGCCGTCGTCGG+TGG | 0.498462 | 5.4:-3870348 | MS.gene22300:CDS |
| TCTATTGACTACACCAATCC+AGG | 0.500793 | 5.4:+3868242 | None:intergenic |
| GTAATCAAGTCCAAAATTCC+AGG | 0.501406 | 5.4:-3867940 | MS.gene22300:CDS |
| ATATGGTCTGTGCAAGTTTG+AGG | 0.503770 | 5.4:-3864265 | MS.gene22300:CDS |
| ATATCCAGGTCTGCGGGTTG+AGG | 0.507129 | 5.4:-3864605 | MS.gene22300:CDS |
| TACCGCATCAACAGCTGCCT+CGG | 0.511107 | 5.4:+3867212 | None:intergenic |
| TCTTTATTTCAGATGCTGGA+GGG | 0.514948 | 5.4:-3868288 | MS.gene22300:intron |
| AAACACCTTGCTCACAGAAT+GGG | 0.515474 | 5.4:-3868135 | MS.gene22300:CDS |
| GTACGTCTTTCCATTACTGC+AGG | 0.521066 | 5.4:+3863984 | None:intergenic |
| AGGTTAAAGTATCCCTGGAT+TGG | 0.524942 | 5.4:-3868255 | MS.gene22300:CDS |
| CTTTATTTCAGATGCTGGAG+GGG | 0.525102 | 5.4:-3868287 | MS.gene22300:intron |
| GTCGCAAGATCTTGATTGGC+TGG | 0.525194 | 5.4:+3868688 | None:intergenic |
| CATTTAATTGCTCCAGAACA+AGG | 0.528420 | 5.4:-3867282 | MS.gene22300:CDS |
| GGTAAGTACCTTCTCAATGT+AGG | 0.534054 | 5.4:+3869006 | None:intergenic |
| TGTTCTGGAGCAATTAAATG+AGG | 0.536794 | 5.4:+3867285 | None:intergenic |
| AGCCTATTGCAGCTGATGAA+GGG | 0.537561 | 5.4:-3867855 | MS.gene22300:CDS |
| GAACCATATTCTCAATGTCT+TGG | 0.538838 | 5.4:+3869032 | None:intergenic |
| GATGAAACCGATAGAGAGAC+TGG | 0.539381 | 5.4:-3869763 | MS.gene22300:CDS |
| TCTTCCTGGCCTTACAAAGG+TGG | 0.539572 | 5.4:-3869178 | MS.gene22300:CDS |
| GTGACCTCAACCCGCAGACC+TGG | 0.539877 | 5.4:+3864601 | None:intergenic |
| GAATGAGGATCCTGCAGTAA+TGG | 0.540703 | 5.4:-3863994 | MS.gene22300:CDS |
| TGCCGAGGCAGCTGTTGATG+CGG | 0.543898 | 5.4:-3867214 | MS.gene22300:intron |
| AATGGAGAACCTAATATCAC+TGG | 0.547056 | 5.4:-3870454 | MS.gene22300:CDS |
| CAGCAATGATGACAGACGCT+TGG | 0.556087 | 5.4:+3864016 | None:intergenic |
| AAATGATTGACTTACTTCAA+CGG | 0.557064 | 5.4:+3868374 | None:intergenic |
| CCACCCTTGTCTACATCTTG+AGG | 0.557204 | 5.4:+3864466 | None:intergenic |
| CAATGAAGAAATGATCAAGC+AGG | 0.557508 | 5.4:+3864189 | None:intergenic |
| CATTGAGATAGGAAAATATG+AGG | 0.558188 | 5.4:-3864171 | MS.gene22300:intron |
| TAAATATTTGATCAAATGTG+CGG | 0.559583 | 5.4:+3867589 | None:intergenic |
| TGATTCGCTGGAACGAATGA+GGG | 0.560521 | 5.4:-3864566 | MS.gene22300:CDS |
| AAACTTATTACAGAAGCTGA+TGG | 0.561888 | 5.4:-3867315 | MS.gene22300:CDS |
| CAGAACCCATTCTGTGAGCA+AGG | 0.562375 | 5.4:+3868130 | None:intergenic |
| CAGGAACTGAAGCAATATCC+AGG | 0.563084 | 5.4:-3864619 | MS.gene22300:CDS |
| CCACCGACGACGGCGATAGA+GGG | 0.563655 | 5.4:+3870348 | None:intergenic |
| CTCAGTATATATTCTCCCAA+TGG | 0.564254 | 5.4:-3869706 | MS.gene22300:intron |
| TCTGTCATCATTGCTGAATG+AGG | 0.565992 | 5.4:-3864009 | MS.gene22300:CDS |
| ATCTTCTCTAACTAGTATCA+GGG | 0.566583 | 5.4:-3867241 | MS.gene22300:CDS |
| TTCTTTATTTCAGATGCTGG+AGG | 0.568922 | 5.4:-3868289 | MS.gene22300:intron |
| CATCAACAGCTGCCTCGGCA+GGG | 0.569211 | 5.4:+3867217 | None:intergenic |
| GGCCTTACAAAGGTGGCTGT+TGG | 0.569248 | 5.4:-3869171 | MS.gene22300:intron |
| CCTTGCCAAGATGCTTTCAA+AGG | 0.571322 | 5.4:-3868103 | MS.gene22300:intron |
| AACAACGCTCTCTAATACGG+AGG | 0.571900 | 5.4:+3870308 | None:intergenic |
| AATTAAAATCTCTCGTGAAG+TGG | 0.572859 | 5.4:-3868656 | MS.gene22300:CDS |
| CCAGAGAGTGGGTAAAGAAG+TGG | 0.575305 | 5.4:+3870380 | None:intergenic |
| ACAGCCACCTTTGTAAGGCC+AGG | 0.575599 | 5.4:+3869174 | None:intergenic |
| TGGCTTCACGCACTTGACAA+TGG | 0.576941 | 5.4:+3864219 | None:intergenic |
| GAAGCAATATCCAGGTCTGC+GGG | 0.577643 | 5.4:-3864611 | MS.gene22300:CDS |
| TGATCTTCCTGGCCTTACAA+AGG | 0.580896 | 5.4:-3869181 | MS.gene22300:CDS |
| CTTCCCTCTATCGCCGTCGT+CGG | 0.582110 | 5.4:-3870351 | MS.gene22300:CDS |
| ATAACTCTAGTCTCTTTGCA+AGG | 0.582753 | 5.4:+3863958 | None:intergenic |
| GCCTATTGCAGCTGATGAAG+GGG | 0.584201 | 5.4:-3867854 | MS.gene22300:intron |
| TCAACCTACTACAGGCGACC+TGG | 0.584408 | 5.4:-3867432 | MS.gene22300:intron |
| CTCTAGTCTCTTTGCAAGGG+CGG | 0.600404 | 5.4:+3863962 | None:intergenic |
| AGGACACTTACACCCCATCA+AGG | 0.601811 | 5.4:+3867559 | None:intergenic |
| GGAAGAGAGTCCCAGAGAGT+GGG | 0.604169 | 5.4:+3870369 | None:intergenic |
| TAGTATCAGGGGCCCTGCCG+AGG | 0.609632 | 5.4:-3867229 | MS.gene22300:CDS |
| TTCACCGTGGTCACCTAAAG+CGG | 0.609754 | 5.4:+3870407 | None:intergenic |
| GAGAAGATTCAATGAGGCGA+CGG | 0.609795 | 5.4:+3867256 | None:intergenic |
| TCTCGTGAAGTGGATCCCAC+TGG | 0.618163 | 5.4:-3868646 | MS.gene22300:intron |
| AGAGCTCTGGCCACCGACGA+CGG | 0.618673 | 5.4:+3870338 | None:intergenic |
| GTTCTGCAGGCATTGTTACG+CGG | 0.618861 | 5.4:-3870171 | MS.gene22300:intron |
| CCTTTGAAAGCATCTTGGCA+AGG | 0.623106 | 5.4:+3868103 | None:intergenic |
| CAGTTAGTTGATATGGAGTG+TGG | 0.626115 | 5.4:-3864520 | MS.gene22300:CDS |
| TAACTCTAGTCTCTTTGCAA+GGG | 0.628220 | 5.4:+3863959 | None:intergenic |
| TGAAGCAATATCCAGGTCTG+CGG | 0.635896 | 5.4:-3864612 | MS.gene22300:CDS |
| GCCAAAGATTTCTTACCTCG+CGG | 0.638323 | 5.4:-3870285 | MS.gene22300:CDS |
| GGTTCGCTCCTACATTGAGA+AGG | 0.640695 | 5.4:-3869014 | MS.gene22300:intron |
| ATTTAAAGAACACCTTGATG+GGG | 0.641296 | 5.4:-3867571 | MS.gene22300:CDS |
| TTGTGCAGCTGATGTGAGGA+AGG | 0.644018 | 5.4:-3869794 | MS.gene22300:intron |
| CTATTGACTACACCAATCCA+GGG | 0.644359 | 5.4:+3868243 | None:intergenic |
| ACCTACTACAGGCGACCTGG+TGG | 0.658717 | 5.4:-3867429 | MS.gene22300:intron |
| ACTTCCTCAAGATGTAGACA+AGG | 0.658922 | 5.4:-3864470 | MS.gene22300:CDS |
| TTCGCTGGAACGAATGAGGG+AGG | 0.659097 | 5.4:-3864563 | MS.gene22300:CDS |
| TAATTTGTGCAGCTGATGTG+AGG | 0.673714 | 5.4:-3869798 | MS.gene22300:intron |
| TCTTCTCTAACTAGTATCAG+GGG | 0.674301 | 5.4:-3867240 | MS.gene22300:CDS |
| CAAAGCAATTAGTCAGACTG+TGG | 0.676243 | 5.4:-3865165 | MS.gene22300:intron |
| CTGCAGGCATTGTTACGCGG+CGG | 0.678926 | 5.4:-3870168 | MS.gene22300:intron |
| CCTCAAGATGTAGACAAGGG+TGG | 0.696844 | 5.4:-3864466 | MS.gene22300:CDS |
| ATGTTGATATGATTGCTGCT+AGG | 0.699421 | 5.4:-3868197 | MS.gene22300:CDS |
| TATGGAGTGTGGCTATCTGA+CGG | 0.704925 | 5.4:-3864509 | MS.gene22300:CDS |
| TGCACCGCTTTAGGTGACCA+CGG | 0.718569 | 5.4:-3870411 | MS.gene22300:CDS |
| TCACATCTACTTAGACCAAG+CGG | 0.718823 | 5.4:+3863905 | None:intergenic |
| TAGTTAGAGAAGATTCAATG+AGG | 0.718964 | 5.4:+3867250 | None:intergenic |
| CTTCCTCAAGATGTAGACAA+GGG | 0.724534 | 5.4:-3864469 | MS.gene22300:CDS |
| CATCTACTTAGACCAAGCGG+CGG | 0.728289 | 5.4:+3863908 | None:intergenic |
| AAGAAGTGGCTGCTTCACCG+TGG | 0.745596 | 5.4:+3870394 | None:intergenic |
| ATTACATTACCTGATCCGCG+AGG | 0.806360 | 5.4:+3870270 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAACTAATATAAAATTT+GGG | + | chr5.4:3870000-3870019 | None:intergenic | 10.0% |
| !! | TTACAAACTAATATAAAATT+TGG | + | chr5.4:3870001-3870020 | None:intergenic | 10.0% |
| !!! | ATAAAATATTGATAATTCAA+AGG | + | chr5.4:3866558-3866577 | None:intergenic | 10.0% |
| !!! | TAAAATATTGATAATTCAAA+GGG | + | chr5.4:3866557-3866576 | None:intergenic | 10.0% |
| !!! | TTTTTTAATCATTAAGAATA+AGG | + | chr5.4:3868792-3868811 | None:intergenic | 10.0% |
| !! | AAAATTATGGCAATTTAATT+AGG | + | chr5.4:3869527-3869546 | None:intergenic | 15.0% |
| !! | AAAGGATAATTAAGAAAAAA+AGG | + | chr5.4:3866874-3866893 | None:intergenic | 15.0% |
| !! | AAGGATAATTAAGAAAAAAA+GGG | + | chr5.4:3866873-3866892 | None:intergenic | 15.0% |
| !! | AATAAGCTAAAAACAAATTA+TGG | - | chr5.4:3864390-3864409 | MS.gene22300:intron | 15.0% |
| !! | ACAAACTAATATAAAATTTG+GGG | + | chr5.4:3869999-3870018 | None:intergenic | 15.0% |
| !! | AGTTTCAAAAATATATTGAA+TGG | + | chr5.4:3867291-3867310 | None:intergenic | 15.0% |
| !! | ATGAATAAATTCAAACAAAT+TGG | + | chr5.4:3865010-3865029 | None:intergenic | 15.0% |
| !! | TAAAAACAAATTATGGAAAT+AGG | - | chr5.4:3864397-3864416 | MS.gene22300:intron | 15.0% |
| !! | TATTCATATAAAACATCAAT+TGG | - | chr5.4:3866300-3866319 | MS.gene22300:intron | 15.0% |
| !! | TGGAATTTAAGAAATTATTA+GGG | - | chr5.4:3867630-3867649 | MS.gene22300:intron | 15.0% |
| !! | TTAAAAAACTTTATGATCTT+TGG | - | chr5.4:3868804-3868823 | MS.gene22300:intron | 15.0% |
| !! | TTGGAATTTAAGAAATTATT+AGG | - | chr5.4:3867629-3867648 | MS.gene22300:intron | 15.0% |
| !!! | AAACTCTAAAGATATTTTAT+CGG | + | chr5.4:3868711-3868730 | None:intergenic | 15.0% |
| !!! | AAATCAGTTTTACAAAATTA+TGG | + | chr5.4:3869540-3869559 | None:intergenic | 15.0% |
| !!! | AGTCATTTTATAAAGAAATA+AGG | + | chr5.4:3866839-3866858 | None:intergenic | 15.0% |
| !!! | TATTTTTGAAACTTATAGAT+CGG | - | chr5.4:3867298-3867317 | MS.gene22300:CDS | 15.0% |
| !!! | TTTTTTTCTTAATTATCCTT+TGG | - | chr5.4:3866873-3866892 | MS.gene22300:intron | 15.0% |
| !! | AAAAAAAAAACAAGGCTTAT+TGG | - | chr5.4:3868334-3868353 | MS.gene22300:intron | 20.0% |
| !! | AAAATAATGAAATTACCAGT+GGG | + | chr5.4:3865736-3865755 | None:intergenic | 20.0% |
| !! | AAACTAATATAAAATTTGGG+GGG | + | chr5.4:3869997-3870016 | None:intergenic | 20.0% |
| !! | AAGTTTCAAAAATCAGTTAT+GGG | - | chr5.4:3869376-3869395 | MS.gene22300:intron | 20.0% |
| !! | ACACAAATCTAAATAAAACA+AGG | + | chr5.4:3867582-3867601 | None:intergenic | 20.0% |
| !! | CAAACTAATATAAAATTTGG+GGG | + | chr5.4:3869998-3870017 | None:intergenic | 20.0% |
| !! | GAAACTAATTATACATGTTT+GGG | - | chr5.4:3867698-3867717 | MS.gene22300:intron | 20.0% |
| !! | GATATAATGATTCATATCTT+AGG | - | chr5.4:3869947-3869966 | MS.gene22300:intron | 20.0% |
| !! | TAAAATAATGAAATTACCAG+TGG | + | chr5.4:3865737-3865756 | None:intergenic | 20.0% |
| !! | TAAATATTTGATCAAATGTG+CGG | + | chr5.4:3866778-3866797 | None:intergenic | 20.0% |
| !! | TGAAACTAATTATACATGTT+TGG | - | chr5.4:3867697-3867716 | MS.gene22300:intron | 20.0% |
| !! | TGAAAGAGTTTAATTGAAAA+TGG | + | chr5.4:3869149-3869168 | None:intergenic | 20.0% |
| !! | TGGAATTTAAGAAACTATTA+GGG | + | chr5.4:3868275-3868294 | None:intergenic | 20.0% |
| !! | TTGGAATTTAAGAAACTATT+AGG | + | chr5.4:3868276-3868295 | None:intergenic | 20.0% |
| !!! | AAATTAAGTTGCTATATAAG+TGG | - | chr5.4:3867671-3867690 | MS.gene22300:intron | 20.0% |
| !!! | AATATCTTTAGAGTTTTAAG+CGG | - | chr5.4:3868715-3868734 | MS.gene22300:CDS | 20.0% |
| !!! | ATTGATGATTTTTAATGGAT+TGG | - | chr5.4:3868534-3868553 | MS.gene22300:intron | 20.0% |
| !!! | ATTGATGATTTTTAATGGAT+TGG | + | chr5.4:3868553-3868534 | None:intergenic | 20.0% |
| !!! | ATTTTCAATTAAACTCTTTC+AGG | - | chr5.4:3869148-3869167 | MS.gene22300:intron | 20.0% |
| !!! | ATTTTCTAACACAAAATTCT+AGG | + | chr5.4:3865792-3865811 | None:intergenic | 20.0% |
| !!! | CAACTTCTAAAAAAAAAACA+AGG | - | chr5.4:3868326-3868345 | MS.gene22300:intron | 20.0% |
| !!! | GATGTAAATTTTGTATGATT+CGG | - | chr5.4:3867871-3867890 | MS.gene22300:CDS | 20.0% |
| !!! | GTATACTGCTTTTAATTTTA+AGG | - | chr5.4:3865911-3865930 | MS.gene22300:intron | 20.0% |
| !!! | TATGGATTAACTTTAGAAAA+AGG | - | chr5.4:3866583-3866602 | MS.gene22300:intron | 20.0% |
| !!! | TGGAATTTAAGTTAATGTTT+AGG | - | chr5.4:3868766-3868785 | MS.gene22300:intron | 20.0% |
| !!! | TGTTTGACTTAAATTTGAAT+TGG | - | chr5.4:3869274-3869293 | MS.gene22300:intron | 20.0% |
| !!! | TTATATTAGTTTGTAAATGC+TGG | - | chr5.4:3870005-3870024 | MS.gene22300:intron | 20.0% |
| !!! | TTGAGCAAAGAATTTAAAAT+TGG | - | chr5.4:3867508-3867527 | MS.gene22300:intron | 20.0% |
| !!! | TTTCATAATATTTTCTGATG+AGG | - | chr5.4:3865550-3865569 | MS.gene22300:intron | 20.0% |
| !!! | TTTTCTAACACAAAATTCTA+GGG | + | chr5.4:3865791-3865810 | None:intergenic | 20.0% |
| ! | AAAGAAATAAGGACTGAAAA+AGG | + | chr5.4:3866828-3866847 | None:intergenic | 25.0% |
| ! | AAAGATTGATCTTATGGATA+AGG | - | chr5.4:3865958-3865977 | MS.gene22300:intron | 25.0% |
| ! | AAATTCGTATGGTATATATG+TGG | - | chr5.4:3867764-3867783 | MS.gene22300:intron | 25.0% |
| ! | AAATTGGAAAAAGTTGGAAA+AGG | + | chr5.4:3864994-3865013 | None:intergenic | 25.0% |
| ! | AAGATTGATCTTATGGATAA+GGG | - | chr5.4:3865959-3865978 | MS.gene22300:intron | 25.0% |
| ! | ACTTAGTGTACTATTATCTT+TGG | - | chr5.4:3868746-3868765 | MS.gene22300:intron | 25.0% |
| ! | AGCTTTCAATGGAAAATATA+AGG | - | chr5.4:3867026-3867045 | MS.gene22300:intron | 25.0% |
| ! | AGTTTCAAAAATCAGTTATG+GGG | - | chr5.4:3869377-3869396 | MS.gene22300:intron | 25.0% |
| ! | ATAGCCAAAATTATACAGTT+TGG | + | chr5.4:3865652-3865671 | None:intergenic | 25.0% |
| ! | ATATTTAAAGAACACCTTGA+TGG | - | chr5.4:3866791-3866810 | MS.gene22300:intron | 25.0% |
| ! | CATATAAAACATCAATTGGA+CGG | - | chr5.4:3866304-3866323 | MS.gene22300:intron | 25.0% |
| ! | CTAAATAAAACAAGGCTTAT+TGG | + | chr5.4:3867574-3867593 | None:intergenic | 25.0% |
| ! | CTATCAAAAATTGAATGTGT+AGG | + | chr5.4:3869928-3869947 | None:intergenic | 25.0% |
| ! | CTTAAAACATCATTACATGT+TGG | - | chr5.4:3868499-3868518 | MS.gene22300:intron | 25.0% |
| ! | CTTAATGCAATTGTCAATAT+GGG | - | chr5.4:3864835-3864854 | MS.gene22300:intron | 25.0% |
| ! | GAAGTTTCAAAAATCAGTTA+TGG | - | chr5.4:3869375-3869394 | MS.gene22300:intron | 25.0% |
| ! | GAATATATACTGAGATGAAT+AGG | + | chr5.4:3864652-3864671 | None:intergenic | 25.0% |
| ! | GACTCATTGTATGATAAATA+TGG | - | chr5.4:3865514-3865533 | MS.gene22300:intron | 25.0% |
| ! | GAGAAAATGAAAAAATCCAA+AGG | + | chr5.4:3866892-3866911 | None:intergenic | 25.0% |
| ! | GCTTGAAATAAATATTCTGT+TGG | - | chr5.4:3865867-3865886 | MS.gene22300:intron | 25.0% |
| ! | GTGATTAATTGTCTATAAAC+AGG | - | chr5.4:3870053-3870072 | MS.gene22300:intron | 25.0% |
| ! | TATTAATTATCATCACCCAA+TGG | + | chr5.4:3866040-3866059 | None:intergenic | 25.0% |
| ! | TATTTAAAGAACACCTTGAT+GGG | - | chr5.4:3866792-3866811 | MS.gene22300:intron | 25.0% |
| ! | TCAAACAAATTGGAAAAAGT+TGG | + | chr5.4:3865000-3865019 | None:intergenic | 25.0% |
| ! | TCAAACAATTTGAAGAAAGT+TGG | - | chr5.4:3864734-3864753 | MS.gene22300:intron | 25.0% |
| ! | TCATTATTAACTCCAATATG+TGG | - | chr5.4:3864913-3864932 | MS.gene22300:intron | 25.0% |
| ! | TCTGTGCAATTTATTTACTT+AGG | + | chr5.4:3869411-3869430 | None:intergenic | 25.0% |
| ! | TCTTAATGCAATTGTCAATA+TGG | - | chr5.4:3864834-3864853 | MS.gene22300:intron | 25.0% |
| ! | TGAAATTACATTGCTATAAG+TGG | + | chr5.4:3868236-3868255 | None:intergenic | 25.0% |
| ! | TGTATGATTCATATGAGAAA+TGG | + | chr5.4:3868048-3868067 | None:intergenic | 25.0% |
| ! | TTACATTACTCACAAATAGA+AGG | + | chr5.4:3869457-3869476 | None:intergenic | 25.0% |
| ! | TTAGAGAAAGCTTATGAATT+TGG | - | chr5.4:3869039-3869058 | MS.gene22300:CDS | 25.0% |
| ! | TTAGAGAATGGAATGAAATT+AGG | - | chr5.4:3867604-3867623 | MS.gene22300:CDS | 25.0% |
| ! | TTAGAGAATGGAATGAAATT+AGG | + | chr5.4:3867623-3867604 | None:intergenic | 25.0% |
| ! | TTATTTCCACAAATTACATC+AGG | + | chr5.4:3864375-3864394 | None:intergenic | 25.0% |
| ! | TTCAATAATCACTCAATTTC+AGG | + | chr5.4:3867818-3867837 | None:intergenic | 25.0% |
| ! | TTTATGTTGAAAACTGCTTA+CGG | - | chr5.4:3867933-3867952 | MS.gene22300:CDS | 25.0% |
| !! | AAATCAGTGAATCTTTTTCT+AGG | + | chr5.4:3864288-3864307 | None:intergenic | 25.0% |
| !! | AAATGATTGACTTACTTCAA+CGG | + | chr5.4:3865993-3866012 | None:intergenic | 25.0% |
| !! | CTCTAAATTTTTGCATTTTC+AGG | + | chr5.4:3869231-3869250 | None:intergenic | 25.0% |
| !! | CTGTCTATGATATATAGTTT+TGG | - | chr5.4:3870235-3870254 | MS.gene22300:intron | 25.0% |
| !! | TATGTTTACCTATCAGTTTT+TGG | - | chr5.4:3867262-3867281 | MS.gene22300:CDS | 25.0% |
| !! | TTATAAATTTTATCACCACC+AGG | + | chr5.4:3866953-3866972 | None:intergenic | 25.0% |
| !!! | AATCATTTTTTGAGTTGTGA+TGG | - | chr5.4:3866005-3866024 | MS.gene22300:intron | 25.0% |
| !!! | AGAAAAAGATTCACTGATTT+TGG | - | chr5.4:3864288-3864307 | MS.gene22300:CDS | 25.0% |
| !!! | AGTTTTGTCTTATGTCAATA+TGG | - | chr5.4:3870082-3870101 | MS.gene22300:CDS | 25.0% |
| !!! | ATATCTTTAGAGTTTTAAGC+GGG | - | chr5.4:3868716-3868735 | MS.gene22300:CDS | 25.0% |
| !!! | ATTCATTTTAACACACCATT+GGG | + | chr5.4:3864702-3864721 | None:intergenic | 25.0% |
| !!! | GAGGAATTGATGATTTTTAA+TGG | - | chr5.4:3868529-3868548 | MS.gene22300:intron | 25.0% |
| !!! | GAGGAATTGATGATTTTTAA+TGG | + | chr5.4:3868548-3868529 | None:intergenic | 25.0% |
| !!! | GCTTTTAATTTTAAGGTGAA+AGG | - | chr5.4:3865918-3865937 | MS.gene22300:intron | 25.0% |
| !!! | TATTCATTTTAACACACCAT+TGG | + | chr5.4:3864703-3864722 | None:intergenic | 25.0% |
| !!! | TTTTGTTTACCAGTGATATT+AGG | + | chr5.4:3863922-3863941 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTATTTCAGATGC+TGG | - | chr5.4:3866072-3866091 | MS.gene22300:intron | 25.0% |
| AAAAAGTTGGAAAAGGAGTT+GGG | + | chr5.4:3864987-3865006 | None:intergenic | 30.0% | |
| AAAACCCTTGTTAAACTACA+TGG | + | chr5.4:3864448-3864467 | None:intergenic | 30.0% | |
| AAAATTTACATCCGAACTGA+AGG | + | chr5.4:3867863-3867882 | None:intergenic | 30.0% | |
| AAAATTTATATCCGAACCGA+AGG | - | chr5.4:3868067-3868086 | MS.gene22300:intron | 30.0% | |
| AAACATATACTGAATAACCG+TGG | + | chr5.4:3867249-3867268 | None:intergenic | 30.0% | |
| AAACTTATTACAGAAGCTGA+TGG | - | chr5.4:3867049-3867068 | MS.gene22300:intron | 30.0% | |
| AAATCATGCAGAGATTTCAA+AGG | - | chr5.4:3869485-3869504 | MS.gene22300:intron | 30.0% | |
| AAATTCGTATGGCATATATG+TGG | + | chr5.4:3868143-3868162 | None:intergenic | 30.0% | |
| AAATTTATATCCGAACCGAA+GGG | - | chr5.4:3868068-3868087 | MS.gene22300:intron | 30.0% | |
| AATAAATTTCCCCCATCTTA+AGG | + | chr5.4:3868904-3868923 | None:intergenic | 30.0% | |
| AATCTTCTCTAACTAGTATC+AGG | - | chr5.4:3867122-3867141 | MS.gene22300:intron | 30.0% | |
| AATGGAATGAAATTAGGAGT+TGG | - | chr5.4:3867610-3867629 | MS.gene22300:CDS | 30.0% | |
| AATGGAATGAAATTAGGAGT+TGG | + | chr5.4:3867629-3867610 | None:intergenic | 30.0% | |
| AATTAAAATCTCTCGTGAAG+TGG | - | chr5.4:3865708-3865727 | MS.gene22300:intron | 30.0% | |
| AATTGTCAATATGGGAACTA+GGG | - | chr5.4:3864843-3864862 | MS.gene22300:intron | 30.0% | |
| ACTAATTATACATGTTTGGG+TGG | - | chr5.4:3867701-3867720 | MS.gene22300:intron | 30.0% | |
| ATCCATTTCCTTAAGATATC+TGG | - | chr5.4:3869668-3869687 | MS.gene22300:intron | 30.0% | |
| ATCTTCTCTAACTAGTATCA+GGG | - | chr5.4:3867123-3867142 | MS.gene22300:intron | 30.0% | |
| ATGCTTGAATGTTATGAGAT+GGG | + | chr5.4:3867755-3867736 | None:intergenic | 30.0% | |
| ATGTAAAACTCTAGACTTCT+TGG | - | chr5.4:3869617-3869636 | MS.gene22300:intron | 30.0% | |
| ATTCTACACTTAATTCCCTT+CGG | + | chr5.4:3868086-3868105 | None:intergenic | 30.0% | |
| ATTGCTCAACTGTTAGAATT+TGG | + | chr5.4:3865831-3865850 | None:intergenic | 30.0% | |
| ATTTAAAGAACACCTTGATG+GGG | - | chr5.4:3866793-3866812 | MS.gene22300:intron | 30.0% | |
| CATTGAGATAGGAAAATATG+AGG | - | chr5.4:3870193-3870212 | MS.gene22300:intron | 30.0% | |
| CCATGCTTAATTCCTTATAA+TGG | - | chr5.4:3865580-3865599 | MS.gene22300:intron | 30.0% | |
| CCATTATAAGGAATTAAGCA+TGG | + | chr5.4:3865583-3865602 | None:intergenic | 30.0% | |
| CTTAGTAAATATTCTCCCAA+TGG | - | chr5.4:3865030-3865049 | MS.gene22300:intron | 30.0% | |
| CTTGACAAAGATTGATCTTA+TGG | - | chr5.4:3865952-3865971 | MS.gene22300:intron | 30.0% | |
| GATCATTTCTTCATTGAGAT+AGG | - | chr5.4:3870182-3870201 | MS.gene22300:intron | 30.0% | |
| GATTCATATGAGAAATGGAT+TGG | + | chr5.4:3868043-3868062 | None:intergenic | 30.0% | |
| GTTTCAAAAATCAGTTATGG+GGG | - | chr5.4:3869378-3869397 | MS.gene22300:intron | 30.0% | |
| TAAGAACCTTAGAGCAATTA+GGG | + | chr5.4:3868483-3868502 | None:intergenic | 30.0% | |
| TACACTTAATTCCTTCAGTT+CGG | - | chr5.4:3867849-3867868 | MS.gene22300:intron | 30.0% | |
| TAGTTAGAGAAGATTCAATG+AGG | + | chr5.4:3867117-3867136 | None:intergenic | 30.0% | |
| TATGAACCTTAGAGCAAATT+GGG | - | chr5.4:3867423-3867442 | MS.gene22300:intron | 30.0% | |
| TATGCTTGAATGTTATGAGA+TGG | + | chr5.4:3867754-3867735 | None:intergenic | 30.0% | |
| TCATTCCTTATTGAAGGATT+TGG | - | chr5.4:3869172-3869191 | MS.gene22300:CDS | 30.0% | |
| TCTATGCTGAAAATTGCTTA+CGG | + | chr5.4:3867998-3868017 | None:intergenic | 30.0% | |
| TGCAACTCATGAAAATCAAA+AGG | + | chr5.4:3864165-3864184 | None:intergenic | 30.0% | |
| TGTCAAGTTAACAACTACAA+AGG | + | chr5.4:3865158-3865177 | None:intergenic | 30.0% | |
| TTAAGAACCTTAGAGCAATT+AGG | + | chr5.4:3868484-3868503 | None:intergenic | 30.0% | |
| TTAAGTTTCAGCTTAGAGAA+AGG | + | chr5.4:3865382-3865401 | None:intergenic | 30.0% | |
| TTATGAACCTTAGAGCAAAT+TGG | - | chr5.4:3867422-3867441 | MS.gene22300:intron | 30.0% | |
| TTATGGAAATAGGCGAAAAA+CGG | - | chr5.4:3864407-3864426 | MS.gene22300:intron | 30.0% | |
| TTATGTTGAAAACTGCTTAC+GGG | - | chr5.4:3867934-3867953 | MS.gene22300:CDS | 30.0% | |
| TTGAGCAAAGAAGTGAAATT+TGG | + | chr5.4:3868400-3868419 | None:intergenic | 30.0% | |
| TTGCTCTATTTATACCCTTT+AGG | - | chr5.4:3868637-3868656 | MS.gene22300:intron | 30.0% | |
| TTTCAAAAATCAGTTATGGG+GGG | - | chr5.4:3869379-3869398 | MS.gene22300:intron | 30.0% | |
| TTTGAGAAGAGTCTAGAAAA+AGG | + | chr5.4:3868680-3868699 | None:intergenic | 30.0% | |
| ! | AACATCATTACATGTTGGTT+TGG | - | chr5.4:3868504-3868523 | MS.gene22300:intron | 30.0% |
| ! | AACTCTACAGTTAGTTGATA+TGG | - | chr5.4:3869837-3869856 | MS.gene22300:intron | 30.0% |
| ! | AATTGATTCAAATCATGTGC+AGG | - | chr5.4:3866724-3866743 | MS.gene22300:intron | 30.0% |
| ! | AATTGGTAATTTGCACCTAA+AGG | + | chr5.4:3868655-3868674 | None:intergenic | 30.0% |
| ! | AGATTTGTGTTGTTAGAGAA+TGG | - | chr5.4:3867592-3867611 | MS.gene22300:CDS | 30.0% |
| ! | ATTGATTCAAATCATGTGCA+GGG | - | chr5.4:3866725-3866744 | MS.gene22300:intron | 30.0% |
| ! | ATTGGTAATTTGCACCTAAA+GGG | + | chr5.4:3868654-3868673 | None:intergenic | 30.0% |
| ! | GAATTTAAAATTGGAGCTTG+TGG | - | chr5.4:3867517-3867536 | MS.gene22300:intron | 30.0% |
| ! | TTCTCAATTCCTCAACTTTT+AGG | - | chr5.4:3864317-3864336 | MS.gene22300:intron | 30.0% |
| ! | TTTGAGTTTAGTTTAGCTAC+TGG | + | chr5.4:3864475-3864494 | None:intergenic | 30.0% |
| ! | TTTTATGATCAACCTCCATT+TGG | - | chr5.4:3868871-3868890 | MS.gene22300:intron | 30.0% |
| !! | ATCAATTGGAAGTTGTTTTG+AGG | - | chr5.4:3867541-3867560 | MS.gene22300:intron | 30.0% |
| !! | GTACACAGTTTTTCAAATGT+AGG | + | chr5.4:3865608-3865627 | None:intergenic | 30.0% |
| !! | TGATATATATGGTGTTGGTT+TGG | - | chr5.4:3869714-3869733 | MS.gene22300:CDS | 30.0% |
| !! | TTAATGGATTGGAATGAAGA+GGG | - | chr5.4:3868545-3868564 | MS.gene22300:intron | 30.0% |
| !! | TTTAATGGATTGGAATGAAG+AGG | - | chr5.4:3868544-3868563 | MS.gene22300:intron | 30.0% |
| !!! | ATCAATTGGATGTTGTTTTG+AGG | + | chr5.4:3868367-3868386 | None:intergenic | 30.0% |
| !!! | TTTTAAGGTGAAAGGACAAT+TGG | - | chr5.4:3865926-3865945 | MS.gene22300:intron | 30.0% |
| AAATCAGTTGCTAGACAAGA+AGG | + | chr5.4:3869596-3869615 | None:intergenic | 35.0% | |
| AACAATCGCTGAACTTGAAA+CGG | - | chr5.4:3866468-3866487 | MS.gene22300:intron | 35.0% | |
| AAGAATGCTGGGTAAAATTG+TGG | - | chr5.4:3865062-3865081 | MS.gene22300:intron | 35.0% | |
| AAGAGAGACATGCTAACAAA+TGG | - | chr5.4:3865272-3865291 | MS.gene22300:intron | 35.0% | |
| AATCAGTTGCTAGACAAGAA+GGG | + | chr5.4:3869595-3869614 | None:intergenic | 35.0% | |
| AATCTTTCTCAAGAGAGGAA+AGG | - | chr5.4:3868431-3868450 | MS.gene22300:CDS | 35.0% | |
| AATGGAGACCAAAAACTGAT+AGG | + | chr5.4:3867273-3867292 | None:intergenic | 35.0% | |
| AATTCAAAAACACCCACCAT+TGG | + | chr5.4:3864677-3864696 | None:intergenic | 35.0% | |
| AGTATATATTCTCCCAATGG+TGG | - | chr5.4:3864661-3864680 | MS.gene22300:intron | 35.0% | |
| AGTCAACCTGATGTAATTTG+TGG | - | chr5.4:3864366-3864385 | MS.gene22300:intron | 35.0% | |
| ATAACTCTAGTCTCTTTGCA+AGG | + | chr5.4:3870409-3870428 | None:intergenic | 35.0% | |
| ATAAGTCCCTAATTGCTCTA+AGG | - | chr5.4:3868474-3868493 | MS.gene22300:intron | 35.0% | |
| ATGAACCTTAGAGCAAATTG+GGG | - | chr5.4:3867424-3867443 | MS.gene22300:intron | 35.0% | |
| ATGATGAATACTTGCAAGCT+TGG | + | chr5.4:3866623-3866642 | None:intergenic | 35.0% | |
| ATGTCTTGGACAATACTATC+TGG | + | chr5.4:3865321-3865340 | None:intergenic | 35.0% | |
| ATGTTGATATGATTGCTGCT+AGG | - | chr5.4:3866167-3866186 | MS.gene22300:intron | 35.0% | |
| ATTCAAAAACACCCACCATT+GGG | + | chr5.4:3864676-3864695 | None:intergenic | 35.0% | |
| ATTCTTTCTCACACACCATT+GGG | + | chr5.4:3865048-3865067 | None:intergenic | 35.0% | |
| CAAAGAGACTAGAGTTATAC+AGG | - | chr5.4:3870411-3870430 | MS.gene22300:CDS | 35.0% | |
| CAAATGTAGGCACCATTATA+AGG | + | chr5.4:3865595-3865614 | None:intergenic | 35.0% | |
| CAATGAAGAAATGATCAAGC+AGG | + | chr5.4:3870178-3870197 | None:intergenic | 35.0% | |
| CAATTGTCAATATGGGAACT+AGG | - | chr5.4:3864842-3864861 | MS.gene22300:intron | 35.0% | |
| CAGCTTCAAAAGATTGATGA+AGG | - | chr5.4:3864231-3864250 | MS.gene22300:CDS | 35.0% | |
| CATAAAACACCATTACGTGT+TGG | + | chr5.4:3867407-3867426 | None:intergenic | 35.0% | |
| CATTTAATTGCTCCAGAACA+AGG | - | chr5.4:3867082-3867101 | MS.gene22300:intron | 35.0% | |
| CTATGCTGAAAATTGCTTAC+GGG | + | chr5.4:3867997-3868016 | None:intergenic | 35.0% | |
| CTCAGTATATATTCTCCCAA+TGG | - | chr5.4:3864658-3864677 | MS.gene22300:intron | 35.0% | |
| CTCCAGATATCTTAAGGAAA+TGG | + | chr5.4:3869673-3869692 | None:intergenic | 35.0% | |
| CTGCTTAATATCTCAGCATT+TGG | - | chr5.4:3866396-3866415 | MS.gene22300:intron | 35.0% | |
| CTTAATATCTCAGCATTTGG+AGG | - | chr5.4:3866399-3866418 | MS.gene22300:intron | 35.0% | |
| CTTGAGAAAGATTGAAGCTA+GGG | - | chr5.4:3867484-3867503 | MS.gene22300:intron | 35.0% | |
| CTTGAGAAAGATTGAAGCTA+GGG | + | chr5.4:3867503-3867484 | None:intergenic | 35.0% | |
| GAAAAAGTTGGAAAAGGAGT+TGG | + | chr5.4:3864988-3865007 | None:intergenic | 35.0% | |
| GAACCATATTCTCAATGTCT+TGG | + | chr5.4:3865335-3865354 | None:intergenic | 35.0% | |
| GAGTCTAGAAAAAGGCAAAT+TGG | + | chr5.4:3868672-3868691 | None:intergenic | 35.0% | |
| GATGAGTGTCAAAATTCGTA+TGG | - | chr5.4:3867753-3867772 | MS.gene22300:intron | 35.0% | |
| GATTCATATCTTAGGCGAAT+TGG | - | chr5.4:3869955-3869974 | MS.gene22300:intron | 35.0% | |
| GGGAAAATTGTATGCAATCA+TGG | - | chr5.4:3866745-3866764 | MS.gene22300:intron | 35.0% | |
| GTAATCAAGTCCAAAATTCC+AGG | - | chr5.4:3866424-3866443 | MS.gene22300:intron | 35.0% | |
| GTATATATTCTCCCAATGGT+GGG | - | chr5.4:3864662-3864681 | MS.gene22300:intron | 35.0% | |
| GTCACCATGTAGTTTAACAA+GGG | - | chr5.4:3864441-3864460 | MS.gene22300:CDS | 35.0% | |
| GTGAACCAAATCCTTCAATA+AGG | + | chr5.4:3869180-3869199 | None:intergenic | 35.0% | |
| GTGTCAATATATGCTTACCA+CGG | - | chr5.4:3867229-3867248 | MS.gene22300:CDS | 35.0% | |
| GTTTGATAAGCAGCTTTCAA+TGG | - | chr5.4:3867015-3867034 | MS.gene22300:intron | 35.0% | |
| TAACTCTAGTCTCTTTGCAA+GGG | + | chr5.4:3870408-3870427 | None:intergenic | 35.0% | |
| TAGACTTCTTGGAACTTCAT+TGG | - | chr5.4:3869628-3869647 | MS.gene22300:intron | 35.0% | |
| TAGAGCAATTAGGGACTTAT+GGG | + | chr5.4:3868474-3868493 | None:intergenic | 35.0% | |
| TCAACTTACTAATGACTGCT+TGG | - | chr5.4:3865131-3865150 | MS.gene22300:intron | 35.0% | |
| TCAGGTTCATTCCTTATTGA+AGG | - | chr5.4:3869166-3869185 | MS.gene22300:intron | 35.0% | |
| TCTTCTCTAACTAGTATCAG+GGG | - | chr5.4:3867124-3867143 | MS.gene22300:intron | 35.0% | |
| TCTTGAGAAAGATTGAAGCT+AGG | - | chr5.4:3867483-3867502 | MS.gene22300:intron | 35.0% | |
| TCTTGAGAAAGATTGAAGCT+AGG | + | chr5.4:3867502-3867483 | None:intergenic | 35.0% | |
| TGATTACGTGCATTTCTAAG+TGG | - | chr5.4:3867201-3867220 | MS.gene22300:intron | 35.0% | |
| TGTCACCATGTAGTTTAACA+AGG | - | chr5.4:3864440-3864459 | MS.gene22300:CDS | 35.0% | |
| TGTCCAAGACATTGAGAATA+TGG | - | chr5.4:3865329-3865348 | MS.gene22300:intron | 35.0% | |
| TTAGAGCAATTAGGGACTTA+TGG | + | chr5.4:3868475-3868494 | None:intergenic | 35.0% | |
| ! | AAATGCTGGAAATGAGTTGA+AGG | - | chr5.4:3870019-3870038 | MS.gene22300:intron | 35.0% |
| ! | AAATTTGAATTGGCTCTCCT+CGG | - | chr5.4:3869284-3869303 | MS.gene22300:intron | 35.0% |
| ! | ATTCGGATGAGAAATGGATT+TGG | - | chr5.4:3867888-3867907 | MS.gene22300:CDS | 35.0% |
| ! | CTTATAGGTTAAAGTATCCC+TGG | - | chr5.4:3866104-3866123 | MS.gene22300:intron | 35.0% |
| ! | GAAGTGAAATTTGGAACTTG+TGG | + | chr5.4:3868391-3868410 | None:intergenic | 35.0% |
| ! | GAAGTTGTGTTGTTAGAGAA+TGG | + | chr5.4:3868313-3868332 | None:intergenic | 35.0% |
| ! | GATAATTCAAAGGGAGCTTT+TGG | + | chr5.4:3866548-3866567 | None:intergenic | 35.0% |
| ! | GCAGCCAAACTGTATAATTT+TGG | - | chr5.4:3865645-3865664 | MS.gene22300:intron | 35.0% |
| ! | GTAATTTGTCAACCTACTAC+AGG | - | chr5.4:3866924-3866943 | MS.gene22300:intron | 35.0% |
| ! | GTGTTTATATTCAGGAGTAC+TGG | + | chr5.4:3866215-3866234 | None:intergenic | 35.0% |
| ! | TCTTTATTTCAGATGCTGGA+GGG | - | chr5.4:3866076-3866095 | MS.gene22300:intron | 35.0% |
| ! | TGACAATGGACAATTGACTT+TGG | + | chr5.4:3870134-3870153 | None:intergenic | 35.0% |
| ! | TGAGCAAGGTGTTTATATTC+AGG | + | chr5.4:3866223-3866242 | None:intergenic | 35.0% |
| ! | TGATTGAATGCCTGGAATTT+TGG | + | chr5.4:3866437-3866456 | None:intergenic | 35.0% |
| ! | TGGAAAACGCGTTTAAAGTT+TGG | - | chr5.4:3867908-3867927 | MS.gene22300:CDS | 35.0% |
| ! | TGGAAAACGCGTTTAAAGTT+TGG | + | chr5.4:3867927-3867908 | None:intergenic | 35.0% |
| ! | TGTATGATTCGGATGAGAAA+TGG | - | chr5.4:3867882-3867901 | MS.gene22300:CDS | 35.0% |
| ! | TTCTTTATTTCAGATGCTGG+AGG | - | chr5.4:3866075-3866094 | MS.gene22300:intron | 35.0% |
| !! | ATTACATGTTGGTTTGGTAG+AGG | - | chr5.4:3868510-3868529 | MS.gene22300:intron | 35.0% |
| !! | CAATACCTTTGAAAGCATCT+TGG | + | chr5.4:3866269-3866288 | None:intergenic | 35.0% |
| !! | GATTTTGAGAGAGAAAGAAG+TGG | - | chr5.4:3868590-3868609 | MS.gene22300:intron | 35.0% |
| !! | GCTGTTGGTAAGTAACATTT+TGG | - | chr5.4:3865208-3865227 | MS.gene22300:intron | 35.0% |
| !! | GTGTTTTTGAATTCTCCCAA+TGG | - | chr5.4:3864684-3864703 | MS.gene22300:intron | 35.0% |
| !! | TGTTCTGGAGCAATTAAATG+AGG | + | chr5.4:3867082-3867101 | None:intergenic | 35.0% |
| !!! | GCGATAAGATCGTTTTTTCA+TGG | - | chr5.4:3866665-3866684 | MS.gene22300:intron | 35.0% |
| !!! | TTTTGAAGCTGCAAAACAAG+AGG | + | chr5.4:3864222-3864241 | None:intergenic | 35.0% |
| AAACACCTTGCTCACAGAAT+GGG | - | chr5.4:3866229-3866248 | MS.gene22300:intron | 40.0% | |
| AATAGGCGAAAAACGGCTTA+TGG | - | chr5.4:3864414-3864433 | MS.gene22300:CDS | 40.0% | |
| ACAACTAGTGGGAAAAGACT+TGG | + | chr5.4:3868936-3868955 | None:intergenic | 40.0% | |
| ACACAAGAAGAGCCACATAT+TGG | + | chr5.4:3864928-3864947 | None:intergenic | 40.0% | |
| ACACTTAATTCCCTTCGGTT+CGG | + | chr5.4:3868081-3868100 | None:intergenic | 40.0% | |
| ACTTCCTCAAGATGTAGACA+AGG | - | chr5.4:3869894-3869913 | MS.gene22300:intron | 40.0% | |
| AGAGCAAATTGGGGACTTAT+GGG | - | chr5.4:3867433-3867452 | MS.gene22300:intron | 40.0% | |
| ATATGGGAACTAGGGAATGA+TGG | - | chr5.4:3864851-3864870 | MS.gene22300:intron | 40.0% | |
| ATATGGTCTGTGCAAGTTTG+AGG | - | chr5.4:3870099-3870118 | MS.gene22300:CDS | 40.0% | |
| ATCAACCTCCATTTGGTCAA+AGG | - | chr5.4:3868878-3868897 | MS.gene22300:intron | 40.0% | |
| ATCAGTTGCTAGACAAGAAG+GGG | + | chr5.4:3869594-3869613 | None:intergenic | 40.0% | |
| ATCTGACGGTTGAGTACTTT+CGG | - | chr5.4:3869869-3869888 | MS.gene22300:intron | 40.0% | |
| CAAACAGAGCCTAAAAGTTG+AGG | + | chr5.4:3864329-3864348 | None:intergenic | 40.0% | |
| CAAAGCAATTAGTCAGACTG+TGG | - | chr5.4:3869199-3869218 | MS.gene22300:CDS | 40.0% | |
| CAAGCTTGGAATGGAAAACA+AGG | + | chr5.4:3866609-3866628 | None:intergenic | 40.0% | |
| CATTCTTTCTCACACACCAT+TGG | + | chr5.4:3865049-3865068 | None:intergenic | 40.0% | |
| CGTGTTTATTCTAGCAGACA+AGG | - | chr5.4:3869321-3869340 | MS.gene22300:intron | 40.0% | |
| CTGAAAATTGCTTACGGGTT+TGG | + | chr5.4:3867992-3868011 | None:intergenic | 40.0% | |
| CTGATAAGTGATTGAATGCC+TGG | + | chr5.4:3866445-3866464 | None:intergenic | 40.0% | |
| CTTCCTCAAGATGTAGACAA+GGG | - | chr5.4:3869895-3869914 | MS.gene22300:intron | 40.0% | |
| GAATACTTGCAAGCTTGGAA+TGG | + | chr5.4:3866618-3866637 | None:intergenic | 40.0% | |
| GATAAAACACCCAATGTAGC+CGG | + | chr5.4:3868961-3868980 | None:intergenic | 40.0% | |
| GATGGGTGTCAAAATTCGTA+TGG | + | chr5.4:3868154-3868173 | None:intergenic | 40.0% | |
| GCAGCTGATATATATGGTGT+TGG | - | chr5.4:3869709-3869728 | MS.gene22300:CDS | 40.0% | |
| GCTTCAATCTTTCTCAAGAG+AGG | - | chr5.4:3868426-3868445 | MS.gene22300:CDS | 40.0% | |
| GCTTCAATCTTTCTCAAGAG+AGG | + | chr5.4:3868445-3868426 | None:intergenic | 40.0% | |
| GGTAAGTACCTTCTCAATGT+AGG | + | chr5.4:3865361-3865380 | None:intergenic | 40.0% | |
| TAAACACCTTGCTCACAGAA+TGG | - | chr5.4:3866228-3866247 | MS.gene22300:intron | 40.0% | |
| TAGAGCAAATTGGGGACTTA+TGG | - | chr5.4:3867432-3867451 | MS.gene22300:intron | 40.0% | |
| TAGTCCCATATTGGGGAATT+GGG | - | chr5.4:3864877-3864896 | MS.gene22300:intron | 40.0% | |
| TCAACCCAATTCCCCAATAT+GGG | + | chr5.4:3864884-3864903 | None:intergenic | 40.0% | |
| TCTACCAAACCAACACGTAA+TGG | - | chr5.4:3867395-3867414 | MS.gene22300:CDS | 40.0% | |
| TCTCTCGCAGCTGATATATA+TGG | - | chr5.4:3869703-3869722 | MS.gene22300:intron | 40.0% | |
| TCTGTCATCATTGCTGAATG+AGG | - | chr5.4:3870355-3870374 | MS.gene22300:CDS | 40.0% | |
| TCTTAAGGCCTTTGACCAAA+TGG | + | chr5.4:3868889-3868908 | None:intergenic | 40.0% | |
| TGATGGAACATCATGCCATT+GGG | - | chr5.4:3866022-3866041 | MS.gene22300:intron | 40.0% | |
| TGATGTCGCAAGATCTTGAT+TGG | + | chr5.4:3865683-3865702 | None:intergenic | 40.0% | |
| TGGGAACTCCAGATATCTTA+AGG | + | chr5.4:3869679-3869698 | None:intergenic | 40.0% | |
| TTAGTCCCATATTGGGGAAT+TGG | - | chr5.4:3864876-3864895 | MS.gene22300:intron | 40.0% | |
| TTGAAAACTGCTTACGGGTT+TGG | - | chr5.4:3867939-3867958 | MS.gene22300:CDS | 40.0% | |
| TTGACACTCATTGATCTTCC+TGG | - | chr5.4:3865172-3865191 | MS.gene22300:CDS | 40.0% | |
| TTGCATGCAAATTGTTCTGC+AGG | - | chr5.4:3864180-3864199 | MS.gene22300:CDS | 40.0% | |
| TTGGAACTTGTGGCATCAAT+TGG | + | chr5.4:3868381-3868400 | None:intergenic | 40.0% | |
| TTGGTCAAAGGCCTTAAGAT+GGG | - | chr5.4:3868890-3868909 | MS.gene22300:intron | 40.0% | |
| TTTGGTCAAAGGCCTTAAGA+TGG | - | chr5.4:3868889-3868908 | MS.gene22300:intron | 40.0% | |
| ! | AAGTCTTTTCCCACTAGTTG+TGG | - | chr5.4:3868935-3868954 | MS.gene22300:intron | 40.0% |
| ! | AGGTTAAAGTATCCCTGGAT+TGG | - | chr5.4:3866109-3866128 | MS.gene22300:intron | 40.0% |
| ! | ATGGTGTTAGTCCCATATTG+GGG | - | chr5.4:3864870-3864889 | MS.gene22300:intron | 40.0% |
| ! | CAGTTAGTTGATATGGAGTG+TGG | - | chr5.4:3869844-3869863 | MS.gene22300:intron | 40.0% |
| ! | CTATTGACTACACCAATCCA+GGG | + | chr5.4:3866124-3866143 | None:intergenic | 40.0% |
| ! | CTCAACTTTTAGGCTCTGTT+TGG | - | chr5.4:3864327-3864346 | MS.gene22300:intron | 40.0% |
| ! | CTTTATTTCAGATGCTGGAG+GGG | - | chr5.4:3866077-3866096 | MS.gene22300:intron | 40.0% |
| ! | GATGGTGTTAGTCCCATATT+GGG | - | chr5.4:3864869-3864888 | MS.gene22300:intron | 40.0% |
| ! | TAAGTCCCCAATTTGCTCTA+AGG | + | chr5.4:3867432-3867451 | None:intergenic | 40.0% |
| ! | TAATTTGTGCAGCTGATGTG+AGG | - | chr5.4:3864566-3864585 | MS.gene22300:CDS | 40.0% |
| ! | TCTATTGACTACACCAATCC+AGG | + | chr5.4:3866125-3866144 | None:intergenic | 40.0% |
| ! | TGATGGTGTTAGTCCCATAT+TGG | - | chr5.4:3864868-3864887 | MS.gene22300:intron | 40.0% |
| !! | AACACCATTACGTGTTGGTT+TGG | + | chr5.4:3867402-3867421 | None:intergenic | 40.0% |
| !! | AATGGTTTTGCAACATGCAG+AGG | - | chr5.4:3865290-3865309 | MS.gene22300:intron | 40.0% |
| !! | ATGGTTTTGCAACATGCAGA+GGG | - | chr5.4:3865291-3865310 | MS.gene22300:intron | 40.0% |
| !! | ATTACGTGTTGGTTTGGTAG+AGG | + | chr5.4:3867396-3867415 | None:intergenic | 40.0% |
| AACAACGCTCTCTAATACGG+AGG | + | chr5.4:3864059-3864078 | None:intergenic | 45.0% | |
| AAGCCTATTGCAGCTGATGA+AGG | - | chr5.4:3866508-3866527 | MS.gene22300:intron | 45.0% | |
| AATTGCTTACGGGTTTGGCA+TGG | + | chr5.4:3867987-3868006 | None:intergenic | 45.0% | |
| AGCCTATTGCAGCTGATGAA+GGG | - | chr5.4:3866509-3866528 | MS.gene22300:intron | 45.0% | |
| ATGATCAAGCAGGCTTCGTT+TGG | + | chr5.4:3870168-3870187 | None:intergenic | 45.0% | |
| ATTACATTACCTGATCCGCG+AGG | + | chr5.4:3864097-3864116 | None:intergenic | 45.0% | |
| CACTTCTTTACCCACTCTCT+GGG | - | chr5.4:3863985-3864004 | MS.gene22300:CDS | 45.0% | |
| CAGGAACTGAAGCAATATCC+AGG | - | chr5.4:3869745-3869764 | MS.gene22300:CDS | 45.0% | |
| CCTTGCCAAGATGCTTTCAA+AGG | - | chr5.4:3866261-3866280 | MS.gene22300:intron | 45.0% | |
| CTCAACCCAATTCCCCAATA+TGG | + | chr5.4:3864885-3864904 | None:intergenic | 45.0% | |
| GAAACGGAACTGAGTCGTTT+GGG | - | chr5.4:3866484-3866503 | MS.gene22300:intron | 45.0% | |
| GAATGAGGATCCTGCAGTAA+TGG | - | chr5.4:3870370-3870389 | MS.gene22300:CDS | 45.0% | |
| GAGAAGATTCAATGAGGCGA+CGG | + | chr5.4:3867111-3867130 | None:intergenic | 45.0% | |
| GAGCAAATTGGGGACTTATG+GGG | - | chr5.4:3867434-3867453 | MS.gene22300:intron | 45.0% | |
| GATGAAACCGATAGAGAGAC+TGG | - | chr5.4:3864601-3864620 | MS.gene22300:CDS | 45.0% | |
| GATTGGAATGAAGAGGGAGA+GGG | - | chr5.4:3868551-3868570 | MS.gene22300:intron | 45.0% | |
| GCCAAAGATTTCTTACCTCG+CGG | - | chr5.4:3864079-3864098 | MS.gene22300:intron | 45.0% | |
| GGCAACAACGCTCTCTAATA+CGG | + | chr5.4:3864062-3864081 | None:intergenic | 45.0% | |
| GGTGTGTGAGAAAGAATGCT+GGG | - | chr5.4:3865051-3865070 | MS.gene22300:intron | 45.0% | |
| GTACGTCTTTCCATTACTGC+AGG | + | chr5.4:3870383-3870402 | None:intergenic | 45.0% | |
| TAAGGCCTTTGACCAAATGG+AGG | + | chr5.4:3868886-3868905 | None:intergenic | 45.0% | |
| TACCAACAGCCACCTTTGTA+AGG | + | chr5.4:3865198-3865217 | None:intergenic | 45.0% | |
| TATGGAGTGTGGCTATCTGA+CGG | - | chr5.4:3869855-3869874 | MS.gene22300:intron | 45.0% | |
| TCCGCGAGGTAAGAAATCTT+TGG | + | chr5.4:3864083-3864102 | None:intergenic | 45.0% | |
| TGAAACGGAACTGAGTCGTT+TGG | - | chr5.4:3866483-3866502 | MS.gene22300:intron | 45.0% | |
| TGAAGCAATATCCAGGTCTG+CGG | - | chr5.4:3869752-3869771 | MS.gene22300:CDS | 45.0% | |
| TGATTCGCTGGAACGAATGA+GGG | - | chr5.4:3869798-3869817 | MS.gene22300:intron | 45.0% | |
| TGGTCAAAGGCCTTAAGATG+GGG | - | chr5.4:3868891-3868910 | MS.gene22300:intron | 45.0% | |
| TGGTGTGTGAGAAAGAATGC+TGG | - | chr5.4:3865050-3865069 | MS.gene22300:intron | 45.0% | |
| TGTTCGTCCAGTCTCTCTAT+CGG | + | chr5.4:3864611-3864630 | None:intergenic | 45.0% | |
| TTGGAGCTTGTGGCATCAAT+TGG | - | chr5.4:3867527-3867546 | MS.gene22300:intron | 45.0% | |
| ! | AAATGCAGCTTCTGATTCGC+TGG | - | chr5.4:3869786-3869805 | MS.gene22300:CDS | 45.0% |
| ! | GTGATGGAACATCATGCCAT+TGG | - | chr5.4:3866021-3866040 | MS.gene22300:intron | 45.0% |
| !! | ACGACAAAGTAAAAGCACCG+AGG | + | chr5.4:3869304-3869323 | None:intergenic | 45.0% |
| !! | CCTTTGAAAGCATCTTGGCA+AGG | + | chr5.4:3866264-3866283 | None:intergenic | 45.0% |
| !! | TGATCTTCCTGGCCTTACAA+AGG | - | chr5.4:3865183-3865202 | MS.gene22300:CDS | 45.0% |
| !!! | GCAACCTTTTTAGAGCAGCA+GGG | + | chr5.4:3866994-3867013 | None:intergenic | 45.0% |
| !!! | TGCAACCTTTTTAGAGCAGC+AGG | + | chr5.4:3866995-3867014 | None:intergenic | 45.0% |
| !! | AAATATAAAATATTAAAACT+AGG | - | chr5.4:3867343-3867362 | MS.gene22300:CDS | 5.0% |
| !!! | ATCAATATTTTATTATTATA+TGG | - | chr5.4:3866565-3866584 | MS.gene22300:intron | 5.0% |
| ACCCCTTCATCAGCTGCAAT+AGG | + | chr5.4:3866514-3866533 | None:intergenic | 50.0% | |
| AGGACACTTACACCCCATCA+AGG | + | chr5.4:3866808-3866827 | None:intergenic | 50.0% | |
| ATCAGCTGCGAGAGAGTGAT+GGG | + | chr5.4:3869698-3869717 | None:intergenic | 50.0% | |
| CAGAACCCATTCTGTGAGCA+AGG | + | chr5.4:3866237-3866256 | None:intergenic | 50.0% | |
| CAGCAATGATGACAGACGCT+TGG | + | chr5.4:3870351-3870370 | None:intergenic | 50.0% | |
| CCACCCTTGTCTACATCTTG+AGG | + | chr5.4:3869901-3869920 | None:intergenic | 50.0% | |
| CCACTTCTTTACCCACTCTC+TGG | - | chr5.4:3863984-3864003 | MS.gene22300:CDS | 50.0% | |
| CCAGAGAGTGGGTAAAGAAG+TGG | + | chr5.4:3863987-3864006 | None:intergenic | 50.0% | |
| CCTCAAGATGTAGACAAGGG+TGG | - | chr5.4:3869898-3869917 | MS.gene22300:intron | 50.0% | |
| CTCTAGTCTCTTTGCAAGGG+CGG | + | chr5.4:3870405-3870424 | None:intergenic | 50.0% | |
| GAAGCAATATCCAGGTCTGC+GGG | - | chr5.4:3869753-3869772 | MS.gene22300:CDS | 50.0% | |
| GATTTCTTACCTCGCGGATC+AGG | - | chr5.4:3864085-3864104 | MS.gene22300:intron | 50.0% | |
| GCCTATTGCAGCTGATGAAG+GGG | - | chr5.4:3866510-3866529 | MS.gene22300:intron | 50.0% | |
| GGATTGGAATGAAGAGGGAG+AGG | - | chr5.4:3868550-3868569 | MS.gene22300:intron | 50.0% | |
| GGTCAAAGGCCTTAAGATGG+GGG | - | chr5.4:3868892-3868911 | MS.gene22300:intron | 50.0% | |
| GGTTCGCTCCTACATTGAGA+AGG | - | chr5.4:3865350-3865369 | MS.gene22300:intron | 50.0% | |
| GTCGCAAGATCTTGATTGGC+TGG | + | chr5.4:3865679-3865698 | None:intergenic | 50.0% | |
| TAGTTGTGGCCGGCTACATT+GGG | - | chr5.4:3868949-3868968 | MS.gene22300:intron | 50.0% | |
| TATCAGCTGCGAGAGAGTGA+TGG | + | chr5.4:3869699-3869718 | None:intergenic | 50.0% | |
| TGCTGGAGGGGAGATCTTAT+AGG | - | chr5.4:3866089-3866108 | MS.gene22300:intron | 50.0% | |
| TGCTGGGTAAAATTGTGGCG+TGG | - | chr5.4:3865067-3865086 | MS.gene22300:intron | 50.0% | |
| TGGCTTCACGCACTTGACAA+TGG | + | chr5.4:3870148-3870167 | None:intergenic | 50.0% | |
| TTCACCGTGGTCACCTAAAG+CGG | + | chr5.4:3863960-3863979 | None:intergenic | 50.0% | |
| TTGTGCAGCTGATGTGAGGA+AGG | - | chr5.4:3864570-3864589 | MS.gene22300:CDS | 50.0% | |
| ! | CTGATTCGCTGGAACGAATG+AGG | - | chr5.4:3869797-3869816 | MS.gene22300:intron | 50.0% |
| ! | CTTTTCCCACTAGTTGTGGC+CGG | - | chr5.4:3868939-3868958 | MS.gene22300:intron | 50.0% |
| ! | GTTCTGCAGGCATTGTTACG+CGG | - | chr5.4:3864193-3864212 | MS.gene22300:CDS | 50.0% |
| !! | AGCTCCCTGCTGCTCTAAAA+AGG | - | chr5.4:3866987-3867006 | MS.gene22300:intron | 50.0% |
| !! | TCTTCCTGGCCTTACAAAGG+TGG | - | chr5.4:3865186-3865205 | MS.gene22300:CDS | 50.0% |
| !! | TGTTGGTTTGGTTGACTCGC+AGG | - | chr5.4:3869726-3869745 | MS.gene22300:CDS | 50.0% |
| AAGAAGTGGCTGCTTCACCG+TGG | + | chr5.4:3863973-3863992 | None:intergenic | 55.0% | |
| AAGGAGTTGGGAGTTGCGTG+TGG | + | chr5.4:3864975-3864994 | None:intergenic | 55.0% | |
| ACAGCCACCTTTGTAAGGCC+AGG | + | chr5.4:3865193-3865212 | None:intergenic | 55.0% | |
| AGGCGACGGTATCCTTGTTC+TGG | + | chr5.4:3867097-3867116 | None:intergenic | 55.0% | |
| ATGTAGCCGGCCACAACTAG+TGG | + | chr5.4:3868948-3868967 | None:intergenic | 55.0% | |
| CTAAAGCGGTGCATGCTCTC+TGG | + | chr5.4:3863946-3863965 | None:intergenic | 55.0% | |
| CTAGTTGTGGCCGGCTACAT+TGG | - | chr5.4:3868948-3868967 | MS.gene22300:intron | 55.0% | |
| GGAAGAGAGTCCCAGAGAGT+GGG | + | chr5.4:3863998-3864017 | None:intergenic | 55.0% | |
| GGCCTTACAAAGGTGGCTGT+TGG | - | chr5.4:3865193-3865212 | MS.gene22300:CDS | 55.0% | |
| TACCGCATCAACAGCTGCCT+CGG | + | chr5.4:3867155-3867174 | None:intergenic | 55.0% | |
| TCAACCTACTACAGGCGACC+TGG | - | chr5.4:3866932-3866951 | MS.gene22300:intron | 55.0% | |
| TCTCGTGAAGTGGATCCCAC+TGG | - | chr5.4:3865718-3865737 | MS.gene22300:intron | 55.0% | |
| TGGAATGAAGAGGGAGAGGG+AGG | - | chr5.4:3868554-3868573 | MS.gene22300:intron | 55.0% | |
| TGTAGCCGGCCACAACTAGT+GGG | + | chr5.4:3868947-3868966 | None:intergenic | 55.0% | |
| TTCGCTGGAACGAATGAGGG+AGG | - | chr5.4:3869801-3869820 | MS.gene22300:intron | 55.0% | |
| TTGGGAGTTGCGTGTGGTAC+TGG | + | chr5.4:3864969-3864988 | None:intergenic | 55.0% | |
| TTGGGGACTTATGGGGAGCT+TGG | - | chr5.4:3867441-3867460 | MS.gene22300:intron | 55.0% | |
| ! | ATATCCAGGTCTGCGGGTTG+AGG | - | chr5.4:3869759-3869778 | MS.gene22300:CDS | 55.0% |
| ! | CAGAGAGCATGCACCGCTTT+AGG | - | chr5.4:3863944-3863963 | MS.gene22300:CDS | 55.0% |
| ! | CGGAGGATTTTCCAGAGCTC+TGG | + | chr5.4:3864042-3864061 | None:intergenic | 55.0% |
| ! | CTGAGATTGATTCCGCCGCT+TGG | - | chr5.4:3870444-3870463 | MS.gene22300:CDS | 55.0% |
| ! | TGCACCGCTTTAGGTGACCA+CGG | - | chr5.4:3863953-3863972 | MS.gene22300:CDS | 55.0% |
| !! | GTTGCGTGTGGTACTGGTGA+TGG | + | chr5.4:3864963-3864982 | None:intergenic | 55.0% |
| ACCACCAGGTCGCCTGTAGT+AGG | + | chr5.4:3866939-3866958 | None:intergenic | 60.0% | |
| ACCTACTACAGGCGACCTGG+TGG | - | chr5.4:3866935-3866954 | MS.gene22300:intron | 60.0% | |
| CATCAACAGCTGCCTCGGCA+GGG | + | chr5.4:3867150-3867169 | None:intergenic | 60.0% | |
| CTTCCCTCTATCGCCGTCGT+CGG | - | chr5.4:3864013-3864032 | MS.gene22300:CDS | 60.0% | |
| GGGAAGAGAGTCCCAGAGAG+TGG | + | chr5.4:3863999-3864018 | None:intergenic | 60.0% | |
| TGAAGAGGGAGAGGGAGGAG+AGG | - | chr5.4:3868559-3868578 | MS.gene22300:intron | 60.0% | |
| TGCCGAGGCAGCTGTTGATG+CGG | - | chr5.4:3867150-3867169 | MS.gene22300:intron | 60.0% | |
| ! | CTGCAGGCATTGTTACGCGG+CGG | - | chr5.4:3864196-3864215 | MS.gene22300:CDS | 60.0% |
| CCACCGACGACGGCGATAGA+GGG | + | chr5.4:3864019-3864038 | None:intergenic | 65.0% | |
| GCATCAACAGCTGCCTCGGC+AGG | + | chr5.4:3867151-3867170 | None:intergenic | 65.0% | |
| GTGACCTCAACCCGCAGACC+TGG | + | chr5.4:3869766-3869785 | None:intergenic | 65.0% | |
| TAGTATCAGGGGCCCTGCCG+AGG | - | chr5.4:3867135-3867154 | MS.gene22300:intron | 65.0% | |
| ! | AGAGCTCTGGCCACCGACGA+CGG | + | chr5.4:3864029-3864048 | None:intergenic | 65.0% |
| CCCTCTATCGCCGTCGTCGG+TGG | - | chr5.4:3864016-3864035 | MS.gene22300:CDS | 70.0% | |
| GCCACCGACGACGGCGATAG+AGG | + | chr5.4:3864020-3864039 | None:intergenic | 70.0% | |
| GTCGTCGGTGGCCAGAGCTC+TGG | - | chr5.4:3864028-3864047 | MS.gene22300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 3863911 | 3870475 | 3863911 | ID=MS.gene22300 |
| chr5.4 | mRNA | 3863911 | 3870475 | 3863911 | ID=MS.gene22300.t1;Parent=MS.gene22300 |
| chr5.4 | exon | 3870280 | 3870475 | 3870280 | ID=MS.gene22300.t1.exon1;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3870280 | 3870475 | 3870280 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3870077 | 3870184 | 3870077 | ID=MS.gene22300.t1.exon2;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3870077 | 3870184 | 3870077 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3869707 | 3869808 | 3869707 | ID=MS.gene22300.t1.exon3;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3869707 | 3869808 | 3869707 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3869172 | 3869222 | 3869172 | ID=MS.gene22300.t1.exon4;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3869172 | 3869222 | 3869172 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3869015 | 3869076 | 3869015 | ID=MS.gene22300.t1.exon5;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3869015 | 3869076 | 3869015 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3868647 | 3868737 | 3868647 | ID=MS.gene22300.t1.exon6;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3868647 | 3868737 | 3868647 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3868389 | 3868453 | 3868389 | ID=MS.gene22300.t1.exon7;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3868389 | 3868453 | 3868389 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3868104 | 3868298 | 3868104 | ID=MS.gene22300.t1.exon8;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3868104 | 3868298 | 3868104 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3867855 | 3867974 | 3867855 | ID=MS.gene22300.t1.exon9;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3867855 | 3867974 | 3867855 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3867570 | 3867640 | 3867570 | ID=MS.gene22300.t1.exon10;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3867570 | 3867640 | 3867570 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3867215 | 3867440 | 3867215 | ID=MS.gene22300.t1.exon11;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3867215 | 3867440 | 3867215 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3865166 | 3865216 | 3865166 | ID=MS.gene22300.t1.exon12;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3865166 | 3865216 | 3865166 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3864410 | 3864638 | 3864410 | ID=MS.gene22300.t1.exon13;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3864410 | 3864638 | 3864410 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3864172 | 3864311 | 3864172 | ID=MS.gene22300.t1.exon14;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3864172 | 3864311 | 3864172 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| chr5.4 | exon | 3863911 | 3864039 | 3863911 | ID=MS.gene22300.t1.exon15;Parent=MS.gene22300.t1 |
| chr5.4 | CDS | 3863911 | 3864039 | 3863911 | ID=cds.MS.gene22300.t1;Parent=MS.gene22300.t1 |
| Gene Sequence |
| Protein sequence |
