Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010879.t1 | XP_013448440.1 | 97.7 | 617 | 13 | 1 | 1 | 616 | 1 | 617 | 0.00E+00 | 1174.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010879.t1 | Q9FNX5 | 81.6 | 624 | 107 | 1 | 1 | 616 | 1 | 624 | 5.7e-301 | 1034.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010879.t1 | A0A072TYG5 | 97.7 | 617 | 13 | 1 | 1 | 616 | 1 | 617 | 0.0e+00 | 1174.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64242 | MS.gene010879 | PPI |
| MS.gene01221 | MS.gene010879 | PPI |
| MS.gene010879 | MS.gene02205 | PPI |
| MS.gene064936 | MS.gene010879 | PPI |
| MS.gene028493 | MS.gene010879 | PPI |
| MS.gene010879 | MS.gene068015 | PPI |
| MS.gene048935 | MS.gene010879 | PPI |
| MS.gene010879 | MS.gene053588 | PPI |
| MS.gene90230 | MS.gene010879 | PPI |
| MS.gene55806 | MS.gene010879 | PPI |
| MS.gene073953 | MS.gene010879 | PPI |
| MS.gene22300 | MS.gene010879 | PPI |
| MS.gene53578 | MS.gene010879 | PPI |
| MS.gene069595 | MS.gene010879 | PPI |
| MS.gene010879 | MS.gene002248 | PPI |
| MS.gene06079 | MS.gene010879 | PPI |
| MS.gene010879 | MS.gene21671 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010879.t1 | MTR_7g451010 | 97.731 | 617 | 13 | 1 | 1 | 616 | 1 | 617 | 0.0 | 1239 |
| MS.gene010879.t1 | MTR_8g009510 | 84.772 | 637 | 76 | 2 | 1 | 616 | 1 | 637 | 0.0 | 1094 |
| MS.gene010879.t1 | MTR_8g105580 | 78.100 | 621 | 123 | 5 | 1 | 614 | 1 | 615 | 0.0 | 1010 |
| MS.gene010879.t1 | MTR_4g098920 | 76.144 | 612 | 138 | 3 | 4 | 614 | 1 | 605 | 0.0 | 991 |
| MS.gene010879.t1 | MTR_1g032550 | 75.444 | 619 | 142 | 3 | 1 | 614 | 1 | 614 | 0.0 | 989 |
| MS.gene010879.t1 | MTR_8g105580 | 78.830 | 581 | 110 | 5 | 1 | 574 | 1 | 575 | 0.0 | 950 |
| MS.gene010879.t1 | MTR_8g099550 | 68.412 | 611 | 190 | 1 | 4 | 614 | 1 | 608 | 0.0 | 919 |
| MS.gene010879.t1 | MTR_5g009150 | 68.085 | 611 | 193 | 1 | 4 | 614 | 1 | 609 | 0.0 | 910 |
| MS.gene010879.t1 | MTR_8g009510 | 84.151 | 530 | 63 | 2 | 108 | 616 | 1 | 530 | 0.0 | 901 |
| MS.gene010879.t1 | MTR_8g027675 | 68.085 | 611 | 191 | 2 | 4 | 614 | 1 | 607 | 0.0 | 897 |
| MS.gene010879.t1 | MTR_4g093750 | 38.028 | 497 | 284 | 5 | 6 | 493 | 14 | 495 | 2.64e-94 | 305 |
| MS.gene010879.t1 | MTR_2g009690 | 37.349 | 498 | 288 | 5 | 7 | 495 | 24 | 506 | 3.06e-94 | 308 |
| MS.gene010879.t1 | MTR_4g093750 | 37.876 | 499 | 286 | 5 | 6 | 494 | 14 | 498 | 1.97e-93 | 304 |
| MS.gene010879.t1 | MTR_4g134680 | 31.141 | 517 | 321 | 10 | 1 | 501 | 1 | 498 | 4.94e-67 | 233 |
| MS.gene010879.t1 | MTR_4g134680 | 31.141 | 517 | 321 | 10 | 1 | 501 | 1 | 498 | 1.95e-66 | 233 |
| MS.gene010879.t1 | MTR_4g134680 | 31.141 | 517 | 321 | 10 | 1 | 501 | 1 | 498 | 5.08e-66 | 233 |
| MS.gene010879.t1 | MTR_4g030140 | 30.814 | 516 | 327 | 7 | 1 | 501 | 1 | 501 | 6.25e-66 | 232 |
| MS.gene010879.t1 | MTR_4g134680 | 38.806 | 201 | 123 | 0 | 301 | 501 | 1 | 201 | 1.30e-38 | 151 |
| MS.gene010879.t1 | MTR_8g087750 | 34.494 | 316 | 183 | 9 | 40 | 346 | 71 | 371 | 8.75e-33 | 134 |
| MS.gene010879.t1 | MTR_8g087770 | 35.689 | 283 | 162 | 7 | 40 | 316 | 68 | 336 | 1.97e-32 | 133 |
| MS.gene010879.t1 | MTR_8g463270 | 33.871 | 186 | 118 | 2 | 40 | 220 | 46 | 231 | 5.81e-21 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010879.t1 | AT3G60190 | 81.571 | 624 | 107 | 1 | 1 | 616 | 1 | 624 | 0.0 | 1087 |
| MS.gene010879.t1 | AT1G14830 | 78.352 | 619 | 123 | 4 | 1 | 614 | 1 | 613 | 0.0 | 1013 |
| MS.gene010879.t1 | AT2G44590 | 77.362 | 614 | 136 | 2 | 4 | 616 | 1 | 612 | 0.0 | 1005 |
| MS.gene010879.t1 | AT2G44590 | 74.593 | 614 | 136 | 3 | 4 | 616 | 1 | 595 | 0.0 | 962 |
| MS.gene010879.t1 | AT2G44590 | 74.472 | 615 | 136 | 4 | 4 | 616 | 1 | 596 | 0.0 | 958 |
| MS.gene010879.t1 | AT5G42080 | 68.576 | 611 | 189 | 1 | 4 | 614 | 1 | 608 | 0.0 | 911 |
| MS.gene010879.t1 | AT5G42080 | 68.576 | 611 | 189 | 1 | 4 | 614 | 1 | 608 | 0.0 | 911 |
| MS.gene010879.t1 | AT5G42080 | 68.085 | 611 | 186 | 2 | 4 | 614 | 1 | 602 | 0.0 | 899 |
| MS.gene010879.t1 | AT3G61760 | 66.667 | 612 | 199 | 3 | 4 | 614 | 1 | 608 | 0.0 | 891 |
| MS.gene010879.t1 | AT3G61760 | 67.657 | 572 | 180 | 3 | 4 | 574 | 1 | 568 | 0.0 | 844 |
| MS.gene010879.t1 | AT3G61760 | 71.205 | 448 | 124 | 3 | 4 | 450 | 1 | 444 | 0.0 | 695 |
| MS.gene010879.t1 | AT5G42080 | 73.380 | 432 | 112 | 1 | 4 | 435 | 1 | 429 | 0.0 | 691 |
| MS.gene010879.t1 | AT2G14120 | 38.171 | 503 | 281 | 8 | 6 | 493 | 20 | 507 | 6.33e-95 | 307 |
| MS.gene010879.t1 | AT2G14120 | 38.020 | 505 | 283 | 8 | 6 | 495 | 20 | 509 | 2.45e-94 | 307 |
| MS.gene010879.t1 | AT2G14120 | 38.020 | 505 | 283 | 8 | 6 | 495 | 20 | 509 | 2.64e-94 | 307 |
| MS.gene010879.t1 | AT2G14120 | 36.466 | 532 | 279 | 9 | 6 | 493 | 20 | 536 | 1.58e-90 | 297 |
| MS.gene010879.t1 | AT4G33650 | 37.052 | 502 | 289 | 7 | 6 | 494 | 36 | 523 | 2.50e-88 | 291 |
| MS.gene010879.t1 | AT4G33650 | 37.052 | 502 | 289 | 7 | 6 | 494 | 36 | 523 | 2.69e-88 | 291 |
| MS.gene010879.t1 | AT1G10290 | 32.108 | 517 | 316 | 10 | 1 | 501 | 1 | 498 | 8.68e-67 | 235 |
| MS.gene010879.t1 | AT1G59610 | 31.721 | 517 | 318 | 11 | 1 | 501 | 1 | 498 | 1.04e-66 | 234 |
| MS.gene010879.t1 | AT1G60500 | 26.087 | 621 | 390 | 19 | 40 | 612 | 65 | 664 | 6.75e-44 | 167 |
| MS.gene010879.t1 | AT1G60530 | 41.079 | 241 | 123 | 6 | 40 | 275 | 62 | 288 | 3.53e-40 | 149 |
| MS.gene010879.t1 | AT1G53140 | 32.258 | 186 | 121 | 2 | 40 | 220 | 62 | 247 | 6.67e-20 | 94.7 |
Find 173 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTCAGCCGGGCCTTTA+AGG | 0.154883 | 7.2:-53558691 | None:intergenic |
| TGGGCACTTGGCCAATAAAA+TGG | 0.183994 | 7.2:+53556636 | MS.gene010879:CDS |
| AATCATTTCTACGCACAAAT+AGG | 0.205517 | 7.2:+53559277 | MS.gene010879:CDS |
| GGGTCTCTTGGTTACCTTAA+AGG | 0.237615 | 7.2:+53558677 | MS.gene010879:CDS |
| TTTGCAACCAGCCCTGATTA+TGG | 0.240291 | 7.2:+53556616 | MS.gene010879:CDS |
| CAAATGCACGACAAAGTTCT+AGG | 0.251473 | 7.2:-53557003 | None:intergenic |
| CAGAGAGCTTGTACTGTTCT+TGG | 0.254193 | 7.2:+53550231 | MS.gene010879:CDS |
| GGAACACTTTCTCTTCTCTT+TGG | 0.266112 | 7.2:+53550277 | MS.gene010879:CDS |
| ACACCACTTTCCTGACATTC+TGG | 0.276893 | 7.2:-53558589 | None:intergenic |
| ATGAAATTGATTCTGTTTCT+TGG | 0.278490 | 7.2:+53559898 | MS.gene010879:CDS |
| AGCACTTGGAGTCGGTAATT+AGG | 0.283809 | 7.2:+53556768 | MS.gene010879:intron |
| TTGAAATTTGTGCAGAGTTC+GGG | 0.287124 | 7.2:+53552399 | MS.gene010879:intron |
| CTTCCTTCTGTTGCTGTTGT+TGG | 0.291548 | 7.2:+53550306 | MS.gene010879:CDS |
| AGGAGAAAGTTCACTGATTT+CGG | 0.299670 | 7.2:+53552647 | MS.gene010879:CDS |
| TGTCTCCTCTCCATCATTGC+AGG | 0.306916 | 7.2:-53559834 | None:intergenic |
| TGTACTGTTCTTGGTGACTA+TGG | 0.308872 | 7.2:+53550240 | MS.gene010879:CDS |
| TTGGCCAAGTGCCCATAATC+AGG | 0.319727 | 7.2:-53556628 | None:intergenic |
| GATGAAACTGATCGGGTAAC+AGG | 0.322169 | 7.2:+53553433 | MS.gene010879:CDS |
| GTTGACAAAGCTAGATTTGA+TGG | 0.323107 | 7.2:+53556332 | MS.gene010879:CDS |
| AACTCTCCGGCTTGTAGATA+TGG | 0.328103 | 7.2:+53559030 | MS.gene010879:CDS |
| CAGTTTCATCCTGAATTTCC+TGG | 0.329548 | 7.2:-53553420 | None:intergenic |
| AGACCTATTGCTCTTGATGC+TGG | 0.333196 | 7.2:+53556866 | MS.gene010879:CDS |
| GGTGGTCCGCCAGGAAATTC+AGG | 0.333998 | 7.2:+53553411 | MS.gene010879:CDS |
| TGAAATTGATTCTGTTTCTT+GGG | 0.337451 | 7.2:+53559899 | MS.gene010879:CDS |
| GATATGCAGAAGGTCATTTC+AGG | 0.343425 | 7.2:+53559140 | MS.gene010879:CDS |
| ATCATTTCTACGCACAAATA+GGG | 0.346733 | 7.2:+53559278 | MS.gene010879:CDS |
| TGTTGCTGTTGTTGGTGGTC+AGG | 0.349260 | 7.2:+53550314 | MS.gene010879:CDS |
| GAACACTTTCTCTTCTCTTT+GGG | 0.351813 | 7.2:+53550278 | MS.gene010879:CDS |
| ATCTCACTGTGGATTTCTTC+CGG | 0.357060 | 7.2:+53559062 | MS.gene010879:CDS |
| TTGCAACCAGCCCTGATTAT+GGG | 0.359110 | 7.2:+53556617 | MS.gene010879:CDS |
| GACTATGGTGGTGGTGATGA+TGG | 0.359929 | 7.2:+53550255 | MS.gene010879:CDS |
| TATTGCTAGAATGATGGAAT+TGG | 0.363716 | 7.2:-53556134 | None:intergenic |
| ACTACAATGGAGAGTTTGAT+TGG | 0.371916 | 7.2:+53550192 | MS.gene010879:CDS |
| GCACTTGGAGTCGGTAATTA+GGG | 0.377053 | 7.2:+53556769 | MS.gene010879:intron |
| ATGCTAAGATGAATAGGAAT+AGG | 0.384278 | 7.2:-53553475 | None:intergenic |
| CGCCTCATTGAGGGGTCTCT+TGG | 0.394914 | 7.2:+53558665 | MS.gene010879:CDS |
| GCTAGTGCAGCTTGAAAAGT+TGG | 0.397485 | 7.2:-53558956 | None:intergenic |
| ACTCTAGGTGAAAGGACATT+TGG | 0.398586 | 7.2:+53556306 | MS.gene010879:intron |
| GAGGCGCCTGTAACCTTGCT+CGG | 0.402304 | 7.2:-53558648 | None:intergenic |
| CCTTCTGTTGCTGTTGTTGG+TGG | 0.404581 | 7.2:+53550309 | MS.gene010879:CDS |
| GACCTATTGCTCTTGATGCT+GGG | 0.408220 | 7.2:+53556867 | MS.gene010879:CDS |
| TGACAATAAACAACAGCCTT+TGG | 0.414782 | 7.2:-53559226 | None:intergenic |
| CTGATGCTATTAAACTTGCC+AGG | 0.415850 | 7.2:+53556185 | MS.gene010879:CDS |
| CGATCTACATTTGAGGGAGC+AGG | 0.416843 | 7.2:-53559118 | None:intergenic |
| GAATAGATGCTAAGATGAAT+AGG | 0.419287 | 7.2:-53553481 | None:intergenic |
| AAAGGCTGTTGTTTATTGTC+AGG | 0.420950 | 7.2:+53559228 | MS.gene010879:CDS |
| ATCTTTCTCTCCAGAATGTC+AGG | 0.421027 | 7.2:+53558579 | MS.gene010879:CDS |
| AGGCGCCTGTAACCTTGCTC+GGG | 0.426525 | 7.2:-53558647 | None:intergenic |
| ACATTCAAGGAACATTTAGA+TGG | 0.426737 | 7.2:+53557031 | MS.gene010879:CDS |
| CAGTGAACTTTCTCCTTGAC+AGG | 0.436120 | 7.2:-53552640 | None:intergenic |
| AGAAGTTGCTATGTCTTGAT+TGG | 0.441116 | 7.2:-53556164 | None:intergenic |
| GCATATCGATCTACATTTGA+GGG | 0.442169 | 7.2:-53559124 | None:intergenic |
| CGGGTAAGTCAATCAAAGTT+AGG | 0.444282 | 7.2:-53554199 | None:intergenic |
| CTTACCGTCTGCAACATCCC+TGG | 0.445527 | 7.2:+53556512 | MS.gene010879:CDS |
| GGAGACAACAGTGTGCAAAA+AGG | 0.446780 | 7.2:+53559850 | MS.gene010879:CDS |
| GGGCACTTGGCCAATAAAAT+GGG | 0.455043 | 7.2:+53556637 | MS.gene010879:CDS |
| TGGAAGCTTTCGCAAGGCAG+AGG | 0.456901 | 7.2:-53558546 | None:intergenic |
| AGAGAAAGATGACGATCAAA+TGG | 0.463028 | 7.2:-53558566 | None:intergenic |
| TTTATTAAAGACGTTATACT+AGG | 0.464298 | 7.2:-53556800 | None:intergenic |
| AATCAGAGATGGATCATCTT+GGG | 0.469804 | 7.2:+53556843 | MS.gene010879:CDS |
| GAATCAGAGATGGATCATCT+TGG | 0.476439 | 7.2:+53556842 | MS.gene010879:CDS |
| CCTTGCAAAGCTTCTCTCAA+AGG | 0.477703 | 7.2:+53556669 | MS.gene010879:CDS |
| ACCCCAGCATCAAGAGCAAT+AGG | 0.479880 | 7.2:-53556869 | None:intergenic |
| CCTGGGTTGGTATAGTAAAT+CGG | 0.480595 | 7.2:+53556530 | MS.gene010879:CDS |
| GTTGCTATGTCTTGATTGGC+TGG | 0.482150 | 7.2:-53556160 | None:intergenic |
| TGTTCAAGACATTGAAGCTA+TGG | 0.487275 | 7.2:+53554350 | MS.gene010879:CDS |
| GGTTACAGGCGCCTCATTGA+GGG | 0.487700 | 7.2:+53558656 | MS.gene010879:CDS |
| TTATATATCTTGTCACCTCC+TGG | 0.488211 | 7.2:-53558503 | None:intergenic |
| GGACAAAGGAACTAATGCTT+TGG | 0.488353 | 7.2:+53556353 | MS.gene010879:CDS |
| GAAATCAATAGCTGAAACTC+AGG | 0.489125 | 7.2:+53558839 | MS.gene010879:CDS |
| TGCATATCGATCTACATTTG+AGG | 0.489302 | 7.2:-53559125 | None:intergenic |
| TATTGCAGCGGTGGTCCGCC+AGG | 0.490549 | 7.2:+53553402 | MS.gene010879:intron |
| CCCTTAAGGTCTTGGAGGGA+AGG | 0.493711 | 7.2:+53556488 | MS.gene010879:intron |
| GTCTCCTCTCCATCATTGCA+GGG | 0.494426 | 7.2:-53559833 | None:intergenic |
| TTATTCCCTTAAGGTCTTGG+AGG | 0.494658 | 7.2:+53556483 | MS.gene010879:intron |
| TTACCGTCTGCAACATCCCT+GGG | 0.497480 | 7.2:+53556513 | MS.gene010879:CDS |
| AACTTTGTCGTGCATTTGAA+AGG | 0.502323 | 7.2:+53557008 | MS.gene010879:CDS |
| TGCATTTGAAAGGACATTCA+AGG | 0.503142 | 7.2:+53557018 | MS.gene010879:CDS |
| TGGTATAGTAAATCGGTCTC+AGG | 0.505175 | 7.2:+53556537 | MS.gene010879:CDS |
| TACAGCCACTTTAGTCAGAC+CGG | 0.506020 | 7.2:-53554219 | None:intergenic |
| AGGTTACAGGCGCCTCATTG+AGG | 0.512010 | 7.2:+53558655 | MS.gene010879:CDS |
| CAGCCCTGATTATGGGCACT+TGG | 0.512089 | 7.2:+53556624 | MS.gene010879:CDS |
| CGGCAAATGAGGCTTTAGAA+AGG | 0.512409 | 7.2:+53558984 | MS.gene010879:CDS |
| AATTCAGGATGAAACTGATC+GGG | 0.512694 | 7.2:+53553426 | MS.gene010879:CDS |
| TCTTGGTTACCTTAAAGGCC+CGG | 0.516867 | 7.2:+53558682 | MS.gene010879:CDS |
| TTTAATAAACAAAAGCATTG+AGG | 0.522460 | 7.2:+53556814 | MS.gene010879:CDS |
| GCATCTACTGAAGCTTCAGC+CGG | 0.525082 | 7.2:-53558701 | None:intergenic |
| ATTGCTAGAATGATGGAATT+GGG | 0.527452 | 7.2:-53556133 | None:intergenic |
| CCGAGTTTCTTCACCTGTCA+AGG | 0.527976 | 7.2:+53552627 | MS.gene010879:CDS |
| GGTGTTGCAGTTGCATAAGA+TGG | 0.528786 | 7.2:+53552583 | MS.gene010879:CDS |
| CCTCAAGAAGCGGAGCAAGC+TGG | 0.530747 | 7.2:+53559091 | MS.gene010879:CDS |
| TAAACAACTATCTCTAATGT+TGG | 0.535646 | 7.2:+53559803 | MS.gene010879:CDS |
| GGACGAAGACCCTGCAATGA+TGG | 0.537667 | 7.2:+53559824 | MS.gene010879:CDS |
| ACCTATTGCTCTTGATGCTG+GGG | 0.538771 | 7.2:+53556868 | MS.gene010879:CDS |
| AATGTCTTGAACAATACTCT+CGG | 0.539924 | 7.2:-53554340 | None:intergenic |
| ATGTCTTGAACAATACTCTC+GGG | 0.541233 | 7.2:-53554339 | None:intergenic |
| AATGGAGAGTTTGATTGGGT+TGG | 0.544278 | 7.2:+53550197 | MS.gene010879:CDS |
| TTACCTTCTCAACATAAGAT+CGG | 0.547247 | 7.2:-53554374 | None:intergenic |
| CTAACTTTGATTGACTTACC+CGG | 0.547728 | 7.2:+53554200 | MS.gene010879:CDS |
| ACTAGCTGCAGCGGCAAATG+AGG | 0.548590 | 7.2:+53558973 | MS.gene010879:CDS |
| CCAGCTTGCTCCGCTTCTTG+AGG | 0.548995 | 7.2:-53559091 | None:intergenic |
| CCGCTTCTTGAGGTAGTCTC+CGG | 0.550348 | 7.2:-53559081 | None:intergenic |
| CTACAATGGAGAGTTTGATT+GGG | 0.550619 | 7.2:+53550193 | MS.gene010879:CDS |
| ACTATGGTGGTGGTGATGAT+GGG | 0.550813 | 7.2:+53550256 | MS.gene010879:CDS |
| AAAGTCAAACCTGATCCTCT+AGG | 0.551447 | 7.2:-53552465 | None:intergenic |
| TGATGCTATTAAACTTGCCA+GGG | 0.552574 | 7.2:+53556186 | MS.gene010879:CDS |
| CAGTTGCATAAGATGGAAAG+TGG | 0.553689 | 7.2:+53552590 | MS.gene010879:CDS |
| TCAAATGTGTCGTCTTACAT+AGG | 0.555051 | 7.2:+53559172 | MS.gene010879:CDS |
| ACCTGTGGGATCAACTTCCC+TGG | 0.558260 | 7.2:-53556203 | None:intergenic |
| CTAGTGCAGCTTGAAAAGTT+GGG | 0.558310 | 7.2:-53558955 | None:intergenic |
| CCTTGACAGGTGAAGAAACT+CGG | 0.558905 | 7.2:-53552627 | None:intergenic |
| CAAGTGCCCATAATCAGGGC+TGG | 0.563109 | 7.2:-53556623 | None:intergenic |
| GTTCTTGGTGACTATGGTGG+TGG | 0.566258 | 7.2:+53550246 | MS.gene010879:CDS |
| TATTCCCTTAAGGTCTTGGA+GGG | 0.567621 | 7.2:+53556484 | MS.gene010879:intron |
| TGAGGAACTTGAATCAGAGA+TGG | 0.569985 | 7.2:+53556832 | MS.gene010879:CDS |
| TCAAGGAACATTTAGATGGA+GGG | 0.570129 | 7.2:+53557035 | MS.gene010879:CDS |
| GATTGTGACAAGGCGTCCGT+TGG | 0.571091 | 7.2:+53552562 | MS.gene010879:CDS |
| TTCAAGGAACATTTAGATGG+AGG | 0.572944 | 7.2:+53557034 | MS.gene010879:CDS |
| TGGCCAAGTGCCCATAATCA+GGG | 0.575363 | 7.2:-53556627 | None:intergenic |
| TTGTCTTAAAAGAACTCGTG+AGG | 0.575595 | 7.2:+53558817 | MS.gene010879:CDS |
| GATCTACATTTGAGGGAGCA+GGG | 0.575610 | 7.2:-53559117 | None:intergenic |
| CTTACCCGGTCTGACTAAAG+TGG | 0.579181 | 7.2:+53554214 | MS.gene010879:CDS |
| GGCGCCTGTAACCTTGCTCG+GGG | 0.579592 | 7.2:-53558646 | None:intergenic |
| CATCTACTGAAGCTTCAGCC+GGG | 0.582839 | 7.2:-53558700 | None:intergenic |
| AAGATTCCATATCTACAAGC+CGG | 0.583193 | 7.2:-53559036 | None:intergenic |
| TGGAGATATTGCTAGAATGA+TGG | 0.584007 | 7.2:-53556140 | None:intergenic |
| GACTGGTGGCAGACACACTC+AGG | 0.584956 | 7.2:+53559194 | MS.gene010879:CDS |
| AAATTCAGGATGAAACTGAT+CGG | 0.585782 | 7.2:+53553425 | MS.gene010879:CDS |
| TAATGATCACTCTAGGTGAA+AGG | 0.587318 | 7.2:+53556298 | MS.gene010879:intron |
| GGTCCGATCTTATGTTGAGA+AGG | 0.587471 | 7.2:+53554371 | MS.gene010879:CDS |
| CTTAGCATCTATTCTCCGAA+TGG | 0.589065 | 7.2:+53553490 | MS.gene010879:CDS |
| CCGATTTACTATACCAACCC+AGG | 0.589761 | 7.2:-53556530 | None:intergenic |
| AAAGTAAGAAGACAACTCTC+CGG | 0.590389 | 7.2:+53559017 | MS.gene010879:CDS |
| GGAAGCTTTCGCAAGGCAGA+GGG | 0.592600 | 7.2:-53558545 | None:intergenic |
| ATTTCTGTAGCACTTGGAGT+CGG | 0.594073 | 7.2:+53556760 | MS.gene010879:intron |
| CGCACAAATAGGGAAGAAAG+AGG | 0.595022 | 7.2:+53559288 | MS.gene010879:CDS |
| CGTCTGCAACATCCCTGGGT+TGG | 0.595345 | 7.2:+53556517 | MS.gene010879:CDS |
| TCTCCAGAATGTCAGGAAAG+TGG | 0.595420 | 7.2:+53558586 | MS.gene010879:CDS |
| CCACCAACAACAGCAACAGA+AGG | 0.598434 | 7.2:-53550309 | None:intergenic |
| TGTCAGGAAAGTGGTGTCAG+AGG | 0.598710 | 7.2:+53558595 | MS.gene010879:CDS |
| CCTTTGAGAGAAGCTTTGCA+AGG | 0.601393 | 7.2:-53556669 | None:intergenic |
| TTGAACTATATAAAGCAGCA+AGG | 0.610358 | 7.2:+53559874 | MS.gene010879:CDS |
| ATCAAATGGAAGCTTTCGCA+AGG | 0.617431 | 7.2:-53558552 | None:intergenic |
| TCAAGCTGCACTAGCTGCAG+CGG | 0.617892 | 7.2:+53558964 | MS.gene010879:CDS |
| ACTGTTCTTGGTGACTATGG+TGG | 0.618677 | 7.2:+53550243 | MS.gene010879:CDS |
| TTATGCAACTGCAACACCAA+CGG | 0.618727 | 7.2:-53552578 | None:intergenic |
| CAGGAAAGTGGTGTCAGAGG+CGG | 0.618933 | 7.2:+53558598 | MS.gene010879:CDS |
| AAGCTAGATTTGATGGACAA+AGG | 0.620185 | 7.2:+53556339 | MS.gene010879:CDS |
| GCCAGGGAAGTTGATCCCAC+AGG | 0.620915 | 7.2:+53556202 | MS.gene010879:CDS |
| ATGAAACTGATCGGGTAACA+GGG | 0.621652 | 7.2:+53553434 | MS.gene010879:CDS |
| TGGAGTCGGTAATTAGGGCA+AGG | 0.623592 | 7.2:+53556774 | MS.gene010879:CDS |
| TGAACTATATAAAGCAGCAA+GGG | 0.626349 | 7.2:+53559875 | MS.gene010879:CDS |
| TATGGTTGTTGCGAGACGCA+AGG | 0.627553 | 7.2:+53556582 | MS.gene010879:CDS |
| AATGTAGATCGATATGCAGA+AGG | 0.631524 | 7.2:+53559130 | MS.gene010879:CDS |
| TGTGTCGTCTTACATAGGAC+TGG | 0.634456 | 7.2:+53559177 | MS.gene010879:CDS |
| GTTACAGGCGCCTCATTGAG+GGG | 0.634934 | 7.2:+53558657 | MS.gene010879:CDS |
| TTTGCAGAAGATGACTACAA+TGG | 0.641861 | 7.2:+53550179 | None:intergenic |
| AAGACCCTGCAATGATGGAG+AGG | 0.645781 | 7.2:+53559829 | MS.gene010879:CDS |
| CCGGAGACTACCTCAAGAAG+CGG | 0.649881 | 7.2:+53559081 | MS.gene010879:CDS |
| CAACCCAGGGATGTTGCAGA+CGG | 0.663897 | 7.2:-53556516 | None:intergenic |
| CGATTTACTATACCAACCCA+GGG | 0.664164 | 7.2:-53556529 | None:intergenic |
| ACTCAGGAACACAATTCCAA+AGG | 0.669000 | 7.2:+53559210 | MS.gene010879:CDS |
| GGTCTGACTAAAGTGGCTGT+AGG | 0.671225 | 7.2:+53554221 | MS.gene010879:CDS |
| ACAGCCACTTTAGTCAGACC+GGG | 0.672585 | 7.2:-53554218 | None:intergenic |
| TATAGTAAATCGGTCTCAGG+CGG | 0.675523 | 7.2:+53556540 | MS.gene010879:CDS |
| GAATTGTAGGGATTGTGACA+AGG | 0.675621 | 7.2:+53552552 | MS.gene010879:intron |
| AACCAAGAGACCCCTCAATG+AGG | 0.679755 | 7.2:-53558667 | None:intergenic |
| GTCGTCTTACATAGGACTGG+TGG | 0.681580 | 7.2:+53559180 | MS.gene010879:CDS |
| TAAATCTTTAGGCGGCCAGG+AGG | 0.684882 | 7.2:+53558488 | MS.gene010879:intron |
| AAAGTGGTGTCAGAGGCGGA+TGG | 0.697603 | 7.2:+53558602 | MS.gene010879:CDS |
| GCGCCTGTAACCTTGCTCGG+GGG | 0.699077 | 7.2:-53558645 | None:intergenic |
| TTTCATCCTGAATTTCCTGG+CGG | 0.716608 | 7.2:-53553417 | None:intergenic |
| GGAATCTTCATATCTCACTG+TGG | 0.733675 | 7.2:+53559051 | MS.gene010879:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 53550189 | 53559929 | 53550189 | ID=MS.gene010879 |
| chr7.2 | mRNA | 53550189 | 53559929 | 53550189 | ID=MS.gene010879.t1;Parent=MS.gene010879 |
| chr7.2 | exon | 53550189 | 53550335 | 53550189 | ID=MS.gene010879.t1.exon1;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53550189 | 53550335 | 53550189 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53552414 | 53552477 | 53552414 | ID=MS.gene010879.t1.exon2;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53552414 | 53552477 | 53552414 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53552561 | 53552668 | 53552561 | ID=MS.gene010879.t1.exon3;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53552561 | 53552668 | 53552561 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53553410 | 53553511 | 53553410 | ID=MS.gene010879.t1.exon4;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53553410 | 53553511 | 53553410 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53554192 | 53554242 | 53554192 | ID=MS.gene010879.t1.exon5;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53554192 | 53554242 | 53554192 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53554331 | 53554392 | 53554331 | ID=MS.gene010879.t1.exon6;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53554331 | 53554392 | 53554331 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53556133 | 53556223 | 53556133 | ID=MS.gene010879.t1.exon7;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53556133 | 53556223 | 53556133 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53556313 | 53556377 | 53556313 | ID=MS.gene010879.t1.exon8;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53556313 | 53556377 | 53556313 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53556496 | 53556690 | 53556496 | ID=MS.gene010879.t1.exon9;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53556496 | 53556690 | 53556496 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53556770 | 53556889 | 53556770 | ID=MS.gene010879.t1.exon10;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53556770 | 53556889 | 53556770 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53556986 | 53557056 | 53556986 | ID=MS.gene010879.t1.exon11;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53556986 | 53557056 | 53556986 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53558499 | 53558724 | 53558499 | ID=MS.gene010879.t1.exon12;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53558499 | 53558724 | 53558499 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53558810 | 53558860 | 53558810 | ID=MS.gene010879.t1.exon13;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53558810 | 53558860 | 53558810 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53558941 | 53559309 | 53558941 | ID=MS.gene010879.t1.exon14;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53558941 | 53559309 | 53558941 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| chr7.2 | exon | 53559801 | 53559929 | 53559801 | ID=MS.gene010879.t1.exon15;Parent=MS.gene010879.t1 |
| chr7.2 | CDS | 53559801 | 53559929 | 53559801 | ID=cds.MS.gene010879.t1;Parent=MS.gene010879.t1 |
| Gene Sequence |
| Protein sequence |
