Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26060.t1 | XP_013448440.1 | 98.1 | 617 | 11 | 1 | 1 | 616 | 1 | 617 | 0.00E+00 | 1181.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26060.t1 | Q9FNX5 | 81.9 | 624 | 105 | 1 | 1 | 616 | 1 | 624 | 2.3e-302 | 1038.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26060.t1 | A0A072TYG5 | 98.1 | 617 | 11 | 1 | 1 | 616 | 1 | 617 | 0.0e+00 | 1181.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050237 | MS.gene26060 | 0.823799 | 1.14E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene26060 | 0.804063 | 2.59E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene26060 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene26060 | 0.813249 | 2.82E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90230 | MS.gene26060 | PPI |
| MS.gene26060 | MS.gene053588 | PPI |
| MS.gene26060 | MS.gene02205 | PPI |
| MS.gene26060 | MS.gene55806 | PPI |
| MS.gene073953 | MS.gene26060 | PPI |
| MS.gene26060 | MS.gene069595 | PPI |
| MS.gene26060 | MS.gene048935 | PPI |
| MS.gene53578 | MS.gene26060 | PPI |
| MS.gene26060 | MS.gene22300 | PPI |
| MS.gene26060 | MS.gene002248 | PPI |
| MS.gene06079 | MS.gene26060 | PPI |
| MS.gene26060 | MS.gene064936 | PPI |
| MS.gene26060 | MS.gene21671 | PPI |
| MS.gene01221 | MS.gene26060 | PPI |
| MS.gene028493 | MS.gene26060 | PPI |
| MS.gene26060 | MS.gene068015 | PPI |
| MS.gene26060 | MS.gene64242 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26060.t1 | MTR_7g451010 | 98.055 | 617 | 11 | 1 | 1 | 616 | 1 | 617 | 0.0 | 1241 |
| MS.gene26060.t1 | MTR_8g009510 | 84.772 | 637 | 76 | 2 | 1 | 616 | 1 | 637 | 0.0 | 1093 |
| MS.gene26060.t1 | MTR_8g105580 | 78.422 | 621 | 121 | 5 | 1 | 614 | 1 | 615 | 0.0 | 1013 |
| MS.gene26060.t1 | MTR_4g098920 | 76.307 | 612 | 137 | 3 | 4 | 614 | 1 | 605 | 0.0 | 995 |
| MS.gene26060.t1 | MTR_1g032550 | 75.767 | 619 | 140 | 3 | 1 | 614 | 1 | 614 | 0.0 | 991 |
| MS.gene26060.t1 | MTR_8g105580 | 79.174 | 581 | 108 | 5 | 1 | 574 | 1 | 575 | 0.0 | 952 |
| MS.gene26060.t1 | MTR_8g099550 | 67.921 | 611 | 193 | 1 | 4 | 614 | 1 | 608 | 0.0 | 915 |
| MS.gene26060.t1 | MTR_5g009150 | 67.537 | 613 | 197 | 1 | 4 | 616 | 1 | 611 | 0.0 | 909 |
| MS.gene26060.t1 | MTR_8g009510 | 83.962 | 530 | 64 | 2 | 108 | 616 | 1 | 530 | 0.0 | 899 |
| MS.gene26060.t1 | MTR_8g027675 | 67.758 | 611 | 193 | 2 | 4 | 614 | 1 | 607 | 0.0 | 893 |
| MS.gene26060.t1 | MTR_2g009690 | 38.028 | 497 | 286 | 6 | 7 | 495 | 24 | 506 | 3.15e-95 | 310 |
| MS.gene26060.t1 | MTR_4g093750 | 38.028 | 497 | 284 | 5 | 6 | 493 | 14 | 495 | 8.30e-95 | 306 |
| MS.gene26060.t1 | MTR_4g093750 | 37.876 | 499 | 286 | 5 | 6 | 494 | 14 | 498 | 4.78e-94 | 306 |
| MS.gene26060.t1 | MTR_4g134680 | 30.561 | 517 | 324 | 10 | 1 | 501 | 1 | 498 | 2.13e-64 | 226 |
| MS.gene26060.t1 | MTR_4g134680 | 30.561 | 517 | 324 | 10 | 1 | 501 | 1 | 498 | 6.93e-64 | 226 |
| MS.gene26060.t1 | MTR_4g134680 | 30.561 | 517 | 324 | 10 | 1 | 501 | 1 | 498 | 2.39e-63 | 225 |
| MS.gene26060.t1 | MTR_4g030140 | 30.233 | 516 | 330 | 7 | 1 | 501 | 1 | 501 | 3.59e-63 | 224 |
| MS.gene26060.t1 | MTR_4g134680 | 37.811 | 201 | 125 | 0 | 301 | 501 | 1 | 201 | 3.90e-37 | 147 |
| MS.gene26060.t1 | MTR_8g087750 | 34.494 | 316 | 183 | 9 | 40 | 346 | 71 | 371 | 3.13e-32 | 132 |
| MS.gene26060.t1 | MTR_8g087770 | 35.689 | 283 | 162 | 7 | 40 | 316 | 68 | 336 | 6.86e-32 | 131 |
| MS.gene26060.t1 | MTR_8g463270 | 27.052 | 329 | 217 | 6 | 40 | 347 | 46 | 372 | 5.12e-20 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26060.t1 | AT3G60190 | 81.891 | 624 | 105 | 1 | 1 | 616 | 1 | 624 | 0.0 | 1088 |
| MS.gene26060.t1 | AT1G14830 | 78.029 | 619 | 125 | 4 | 1 | 614 | 1 | 613 | 0.0 | 1011 |
| MS.gene26060.t1 | AT2G44590 | 77.524 | 614 | 135 | 2 | 4 | 616 | 1 | 612 | 0.0 | 1004 |
| MS.gene26060.t1 | AT2G44590 | 74.756 | 614 | 135 | 3 | 4 | 616 | 1 | 595 | 0.0 | 961 |
| MS.gene26060.t1 | AT2G44590 | 74.634 | 615 | 135 | 4 | 4 | 616 | 1 | 596 | 0.0 | 956 |
| MS.gene26060.t1 | AT5G42080 | 68.412 | 611 | 190 | 1 | 4 | 614 | 1 | 608 | 0.0 | 911 |
| MS.gene26060.t1 | AT5G42080 | 68.412 | 611 | 190 | 1 | 4 | 614 | 1 | 608 | 0.0 | 911 |
| MS.gene26060.t1 | AT5G42080 | 67.921 | 611 | 187 | 2 | 4 | 614 | 1 | 602 | 0.0 | 898 |
| MS.gene26060.t1 | AT3G61760 | 65.798 | 614 | 205 | 3 | 4 | 616 | 1 | 610 | 0.0 | 883 |
| MS.gene26060.t1 | AT3G61760 | 66.958 | 572 | 184 | 3 | 4 | 574 | 1 | 568 | 0.0 | 837 |
| MS.gene26060.t1 | AT5G42080 | 73.611 | 432 | 111 | 1 | 4 | 435 | 1 | 429 | 0.0 | 692 |
| MS.gene26060.t1 | AT3G61760 | 70.759 | 448 | 126 | 3 | 4 | 450 | 1 | 444 | 0.0 | 690 |
| MS.gene26060.t1 | AT2G14120 | 37.972 | 503 | 282 | 8 | 6 | 493 | 20 | 507 | 8.23e-95 | 307 |
| MS.gene26060.t1 | AT2G14120 | 37.822 | 505 | 284 | 8 | 6 | 495 | 20 | 509 | 2.81e-94 | 307 |
| MS.gene26060.t1 | AT2G14120 | 37.822 | 505 | 284 | 8 | 6 | 495 | 20 | 509 | 2.93e-94 | 306 |
| MS.gene26060.t1 | AT2G14120 | 36.278 | 532 | 280 | 9 | 6 | 493 | 20 | 536 | 1.87e-90 | 297 |
| MS.gene26060.t1 | AT4G33650 | 36.853 | 502 | 290 | 7 | 6 | 494 | 36 | 523 | 1.90e-89 | 295 |
| MS.gene26060.t1 | AT4G33650 | 36.853 | 502 | 290 | 7 | 6 | 494 | 36 | 523 | 2.00e-89 | 295 |
| MS.gene26060.t1 | AT1G59610 | 31.335 | 517 | 320 | 11 | 1 | 501 | 1 | 498 | 2.42e-64 | 228 |
| MS.gene26060.t1 | AT1G10290 | 31.721 | 517 | 318 | 10 | 1 | 501 | 1 | 498 | 2.55e-64 | 228 |
| MS.gene26060.t1 | AT1G60500 | 26.206 | 622 | 388 | 22 | 40 | 612 | 65 | 664 | 3.11e-42 | 162 |
| MS.gene26060.t1 | AT1G60530 | 40.664 | 241 | 124 | 6 | 40 | 275 | 62 | 288 | 3.56e-39 | 146 |
| MS.gene26060.t1 | AT1G53140 | 27.300 | 337 | 198 | 10 | 40 | 340 | 62 | 387 | 1.57e-19 | 93.6 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGCACTTGGCCAATAAAA+TGG | 0.183994 | 7.4:+54223011 | MS.gene26060:CDS |
| AGGAGAAAGTTCACTGATTT+TGG | 0.186837 | 7.4:+54218998 | MS.gene26060:CDS |
| GCGCCTCATTGAGGGGTCTC+TGG | 0.201390 | 7.4:+54224029 | MS.gene26060:CDS |
| AATCATTTCTACGCACAAAT+AGG | 0.205517 | 7.4:+54224642 | MS.gene26060:CDS |
| TTTGCAACCAGTCCTGATTA+TGG | 0.226321 | 7.4:+54222991 | MS.gene26060:CDS |
| GGGTCTCTGGGTTACTTTAA+AGG | 0.232827 | 7.4:+54224042 | MS.gene26060:CDS |
| TTGAAATTTGTGCAGAGTTC+AGG | 0.252031 | 7.4:+54218716 | MS.gene26060:intron |
| GGAACACTTTCTCTTCTCTT+TGG | 0.266112 | 7.4:+54217256 | MS.gene26060:CDS |
| TTCAGGGAAGTCTTCAGTTT+TGG | 0.271410 | 7.4:+54218733 | MS.gene26060:CDS |
| ATGAAATTGATTCTGTTTCT+TGG | 0.278490 | 7.4:+54225256 | MS.gene26060:CDS |
| AGCACTTGGAGTCGGTAATT+AGG | 0.283809 | 7.4:+54223143 | MS.gene26060:intron |
| CTTCCTTCTGTTGCTGTTGT+TGG | 0.291548 | 7.4:+54217285 | MS.gene26060:CDS |
| TGTCTCCTCTCCATCATTGC+AGG | 0.306916 | 7.4:-54225192 | None:intergenic |
| CTTGGTCCGCCAGGAAATTC+AGG | 0.312501 | 7.4:+54219717 | MS.gene26060:CDS |
| GTTGACAAAGCTAGATTTGA+TGG | 0.323107 | 7.4:+54222704 | MS.gene26060:CDS |
| CAGTTTCATCCTGAATTTCC+TGG | 0.329548 | 7.4:-54219726 | None:intergenic |
| GATGAAACTGATCGAGTAAC+AGG | 0.332067 | 7.4:+54219739 | MS.gene26060:CDS |
| TGAAATTGATTCTGTTTCTT+GGG | 0.337451 | 7.4:+54225257 | MS.gene26060:CDS |
| ACACCACTTTCCTTACATTC+TGG | 0.338475 | 7.4:-54223954 | None:intergenic |
| GATATGCAGAAGGTCATTTC+AGG | 0.343425 | 7.4:+54224505 | MS.gene26060:CDS |
| ATCATTTCTACGCACAAATA+GGG | 0.346733 | 7.4:+54224643 | MS.gene26060:CDS |
| ATCTAACTGTGGATTTCTTC+CGG | 0.348448 | 7.4:+54224427 | MS.gene26060:CDS |
| TGTTGCTGTTGTTGGTGGTC+AGG | 0.349260 | 7.4:+54217293 | MS.gene26060:CDS |
| ATTGCTAGAATGATGGAATT+AGG | 0.350123 | 7.4:-54222504 | None:intergenic |
| GAACACTTTCTCTTCTCTTT+GGG | 0.351813 | 7.4:+54217257 | MS.gene26060:CDS |
| TTGCAACCAGTCCTGATTAT+GGG | 0.353297 | 7.4:+54222992 | MS.gene26060:CDS |
| GCTAGTTCAGCTTGAAAAGT+TGG | 0.353444 | 7.4:-54224321 | None:intergenic |
| AGGCGCCTGTAACCTTGCTC+TGG | 0.357650 | 7.4:-54224012 | None:intergenic |
| TTGCCCCAGAGCAAGGTTAC+AGG | 0.358657 | 7.4:+54224007 | MS.gene26060:CDS |
| GACTATGGTGGTGGTGATGA+TGG | 0.359929 | 7.4:+54217234 | MS.gene26060:CDS |
| TGTTCAAGACATTGAAGTTA+TGG | 0.361218 | 7.4:+54220664 | MS.gene26060:CDS |
| AGACCTATCGCTCTTGATGC+TGG | 0.362848 | 7.4:+54223241 | MS.gene26060:CDS |
| TTGGCCAAGTGCCCATAATC+AGG | 0.367355 | 7.4:-54223003 | None:intergenic |
| ACTACAATGGAGAGTTTGAT+TGG | 0.371916 | 7.4:+54217171 | MS.gene26060:CDS |
| GCACTTGGAGTCGGTAATTA+GGG | 0.377053 | 7.4:+54223144 | MS.gene26060:intron |
| ATGCTAAGATGAATAGGAAT+AGG | 0.384278 | 7.4:-54219781 | None:intergenic |
| GACTTTCTGCCTAGAGGATC+AGG | 0.389564 | 7.4:+54218773 | MS.gene26060:CDS |
| ACTCTAGGTGAAAGGACATT+TGG | 0.398586 | 7.4:+54222678 | MS.gene26060:intron |
| CCTTCTGTTGCTGTTGTTGG+TGG | 0.404581 | 7.4:+54217288 | MS.gene26060:CDS |
| CAGAGAGCTTGTACTGTACT+TGG | 0.405376 | 7.4:+54217210 | MS.gene26060:CDS |
| TGTACTGTACTTGGTGACTA+TGG | 0.408841 | 7.4:+54217219 | MS.gene26060:CDS |
| CTAGTTCAGCTTGAAAAGTT+GGG | 0.414034 | 7.4:-54224320 | None:intergenic |
| CTGATGCAATTAAACTTGCC+AGG | 0.418775 | 7.4:+54222556 | MS.gene26060:CDS |
| GAATAGATGCTAAGATGAAT+AGG | 0.419287 | 7.4:-54219787 | None:intergenic |
| GACCTATCGCTCTTGATGCT+GGG | 0.420252 | 7.4:+54223242 | MS.gene26060:CDS |
| TTTATTAAAGATGTTATACT+AGG | 0.435820 | 7.4:-54223175 | None:intergenic |
| AGAAGTTGCTATGTCTTGAT+TGG | 0.441116 | 7.4:-54222535 | None:intergenic |
| CAGTGAACTTTCTCCTTGGC+AGG | 0.442028 | 7.4:-54218991 | None:intergenic |
| GAAGGCTGTTGTTTATTGTC+AGG | 0.443175 | 7.4:+54224593 | MS.gene26060:CDS |
| CTTACCGTCTGCAACATCCC+TGG | 0.445527 | 7.4:+54222887 | MS.gene26060:CDS |
| GGAGACAACAGTGTGCAAAA+AGG | 0.446780 | 7.4:+54225208 | MS.gene26060:CDS |
| CAAATGCACGGCAAAGTTCA+AGG | 0.452298 | 7.4:-54223376 | None:intergenic |
| ATCTTTCTCTCCAGAATGTA+AGG | 0.453051 | 7.4:+54223944 | MS.gene26060:CDS |
| GGGCACTTGGCCAATAAAAT+GGG | 0.455043 | 7.4:+54223012 | MS.gene26060:CDS |
| TGAAATTTGTGCAGAGTTCA+GGG | 0.456886 | 7.4:+54218717 | MS.gene26060:intron |
| AGAGAAAGATGACGATCAAA+TGG | 0.463028 | 7.4:-54223931 | None:intergenic |
| GGCGCCTGTAACCTTGCTCT+GGG | 0.466555 | 7.4:-54224011 | None:intergenic |
| CGGGTAAATCAATCAAGGTT+AGG | 0.467672 | 7.4:-54220514 | None:intergenic |
| ATATTCAAGGAACACTTAGA+TGG | 0.469598 | 7.4:+54223404 | MS.gene26060:CDS |
| TTAGAAAGGTTTCGTGAAGA+AGG | 0.471540 | 7.4:+54224363 | MS.gene26060:CDS |
| CGCCTCATTGAGGGGTCTCT+GGG | 0.477670 | 7.4:+54224030 | MS.gene26060:CDS |
| GCATCTACTGAAGCTTCAGC+TGG | 0.478686 | 7.4:-54224066 | None:intergenic |
| TGCATTTGAAAGGATATTCA+AGG | 0.481351 | 7.4:+54223391 | MS.gene26060:CDS |
| GTTGCTATGTCTTGATTGGC+TGG | 0.482150 | 7.4:-54222531 | None:intergenic |
| GGTTACAGGCGCCTCATTGA+GGG | 0.487700 | 7.4:+54224021 | MS.gene26060:CDS |
| CCTGGGTTGGCATAGTAAAT+CGG | 0.488986 | 7.4:+54222905 | MS.gene26060:CDS |
| GAAATCAATAGCTGAAACTC+AGG | 0.489125 | 7.4:+54224204 | MS.gene26060:CDS |
| CGATCTACATTCGAGGGAGC+AGG | 0.491562 | 7.4:-54224483 | None:intergenic |
| CCTTGCAAAGCTTCTCTCAA+AGG | 0.492876 | 7.4:+54223044 | MS.gene26060:CDS |
| GTCTCCTCTCCATCATTGCA+GGG | 0.494426 | 7.4:-54225191 | None:intergenic |
| TATTGCAGCCTTGGTCCGCC+AGG | 0.495170 | 7.4:+54219708 | MS.gene26060:intron |
| AACTTTGCCGTGCATTTGAA+AGG | 0.496505 | 7.4:+54223381 | MS.gene26060:CDS |
| TTACCGTCTGCAACATCCCT+GGG | 0.497480 | 7.4:+54222888 | MS.gene26060:CDS |
| TTATATATCCTGTCACCTCC+TGG | 0.499497 | 7.4:-54223868 | None:intergenic |
| TACAGCCACTTTAGTCAGAC+CGG | 0.506020 | 7.4:-54220534 | None:intergenic |
| TGACAATAAACAACAGCCTT+CGG | 0.508171 | 7.4:-54224591 | None:intergenic |
| TGGCATAGTAAATCGGTCTC+AGG | 0.511534 | 7.4:+54222912 | MS.gene26060:CDS |
| AGGTTACAGGCGCCTCATTG+AGG | 0.512010 | 7.4:+54224020 | MS.gene26060:CDS |
| CGGCAAATGAGGCTTTAGAA+AGG | 0.512702 | 7.4:+54224349 | MS.gene26060:CDS |
| CTGAATTTCCTGGCGGACCA+AGG | 0.515227 | 7.4:-54219716 | None:intergenic |
| CCCTCAAGGTCCTGGAGGGA+AGG | 0.520793 | 7.4:+54222863 | MS.gene26060:intron |
| GACGGTAAGACCTTCCCTCC+AGG | 0.521101 | 7.4:-54222873 | None:intergenic |
| TTTAATAAACAAAAGCATTG+AGG | 0.522050 | 7.4:+54223189 | MS.gene26060:CDS |
| CTGAGTTTCTTCACCTGCCA+AGG | 0.526535 | 7.4:+54218978 | MS.gene26060:CDS |
| AAATCAGTGAACTTTCTCCT+TGG | 0.527744 | 7.4:-54218995 | None:intergenic |
| CAGTCCTGATTATGGGCACT+TGG | 0.529844 | 7.4:+54222999 | MS.gene26060:CDS |
| GATTGTGACGAGGCGTCCAT+TGG | 0.530252 | 7.4:+54218913 | MS.gene26060:CDS |
| CCTCAAGAAGCGGAGCAAGC+TGG | 0.530747 | 7.4:+54224456 | MS.gene26060:CDS |
| GAGAAGCTTTGCAAGGTACT+CGG | 0.532158 | 7.4:-54223037 | None:intergenic |
| ACCTGTGGGATCAACTTCCC+TGG | 0.533555 | 7.4:-54222574 | None:intergenic |
| AATCAGAGATGGATCATCTC+GGG | 0.534828 | 7.4:+54223218 | MS.gene26060:CDS |
| TGCATATCGATCTACATTCG+AGG | 0.535283 | 7.4:-54224490 | None:intergenic |
| TAAACAACTATCTCTAATGT+TGG | 0.535646 | 7.4:+54225161 | MS.gene26060:CDS |
| GGACGAAGACCCTGCAATGA+TGG | 0.537667 | 7.4:+54225182 | MS.gene26060:CDS |
| CAGTTGCATAAGATGGAAAG+TGG | 0.541125 | 7.4:+54218941 | MS.gene26060:CDS |
| ACTAGCTAAAGCGGCAAATG+AGG | 0.542689 | 7.4:+54224338 | MS.gene26060:CDS |
| CACTTGATTGCCCCAGAGCA+AGG | 0.543548 | 7.4:+54224000 | MS.gene26060:CDS |
| AATGGAGAGTTTGATTGGGT+TGG | 0.544278 | 7.4:+54217176 | MS.gene26060:CDS |
| TTACCTTCTCAACATAAGAT+CGG | 0.547247 | 7.4:-54220688 | None:intergenic |
| TCAAGCTGAACTAGCTAAAG+CGG | 0.548233 | 7.4:+54224329 | MS.gene26060:CDS |
| TGAATATCCTTTCAAATGCA+CGG | 0.549122 | 7.4:-54223388 | None:intergenic |
| CCGCTTCTTGAGGTAGTCTC+CGG | 0.550348 | 7.4:-54224446 | None:intergenic |
| CTACAATGGAGAGTTTGATT+GGG | 0.550619 | 7.4:+54217172 | MS.gene26060:CDS |
| ACTATGGTGGTGGTGATGAT+GGG | 0.550813 | 7.4:+54217235 | MS.gene26060:CDS |
| GGAAGCTTTCGTAAGGCAGA+TGG | 0.551112 | 7.4:-54223910 | None:intergenic |
| AAAGTCAAACCTGATCCTCT+AGG | 0.551447 | 7.4:-54218782 | None:intergenic |
| TTAGGCGGCCAGGAGGTGAC+AGG | 0.553863 | 7.4:+54223860 | MS.gene26060:intron |
| TCAAATGTGTCGTCTTACAT+AGG | 0.555051 | 7.4:+54224537 | MS.gene26060:CDS |
| CCAGCTTGCTCCGCTTCTTG+AGG | 0.556108 | 7.4:-54224456 | None:intergenic |
| CTAACCTTGATTGATTTACC+CGG | 0.559268 | 7.4:+54220515 | MS.gene26060:CDS |
| TGATGCAATTAAACTTGCCA+GGG | 0.560909 | 7.4:+54222557 | MS.gene26060:CDS |
| TTATGCAACTGCAGCACCAA+TGG | 0.561847 | 7.4:-54218929 | None:intergenic |
| AATGTCTTGAACAATACTCT+CGG | 0.562200 | 7.4:-54220654 | None:intergenic |
| CCGATTTACTATGCCAACCC+AGG | 0.563823 | 7.4:-54222905 | None:intergenic |
| GTACTTGGTGACTATGGTGG+TGG | 0.564827 | 7.4:+54217225 | MS.gene26060:CDS |
| GAATCAGAGATGGATCATCT+CGG | 0.566336 | 7.4:+54223217 | MS.gene26060:CDS |
| CAGACCGGGTAAATCAATCA+AGG | 0.567244 | 7.4:-54220519 | None:intergenic |
| ACCTATCGCTCTTGATGCTG+GGG | 0.568094 | 7.4:+54223243 | MS.gene26060:CDS |
| TGAGGAACTTGAATCAGAGA+TGG | 0.569985 | 7.4:+54223207 | MS.gene26060:CDS |
| GGTCCGATCTTATGTTGAGA+AGG | 0.570113 | 7.4:+54220685 | MS.gene26060:CDS |
| CGTCTGCAACATCCCTGGGT+TGG | 0.571130 | 7.4:+54222892 | MS.gene26060:CDS |
| TTTACCCGGTCTGACTAAAG+TGG | 0.574857 | 7.4:+54220529 | MS.gene26060:CDS |
| TCTCCAGAATGTAAGGAAAG+TGG | 0.575323 | 7.4:+54223951 | MS.gene26060:CDS |
| TTGTCTTAAAAGAACTCGTG+AGG | 0.575595 | 7.4:+54224182 | MS.gene26060:CDS |
| ATGTCTTGAACAATACTCTC+GGG | 0.576905 | 7.4:-54220653 | None:intergenic |
| GGCCGTGACTTTCTGCCTAG+AGG | 0.577600 | 7.4:+54218767 | MS.gene26060:CDS |
| TGGAGATATTGCTAGAATGA+TGG | 0.584007 | 7.4:-54222511 | None:intergenic |
| TAATGATCACTCTAGGTGAA+AGG | 0.587318 | 7.4:+54222670 | MS.gene26060:intron |
| TGCTCTGGGGCAATCAAGTG+AGG | 0.587942 | 7.4:-54223997 | None:intergenic |
| GGTGCTGCAGTTGCATAAGA+TGG | 0.588337 | 7.4:+54218934 | MS.gene26060:CDS |
| CTTAGCATCTATTCTCCGAA+TGG | 0.589065 | 7.4:+54219796 | MS.gene26060:CDS |
| ATCAAATGGAAGCTTTCGTA+AGG | 0.590630 | 7.4:-54223917 | None:intergenic |
| TTCAAGGAACACTTAGATGG+AGG | 0.592755 | 7.4:+54223407 | MS.gene26060:CDS |
| ATTTCTGTAGCACTTGGAGT+CGG | 0.594073 | 7.4:+54223135 | MS.gene26060:intron |
| CGCACAAATAGGGAAGAAAG+AGG | 0.595022 | 7.4:+54224653 | MS.gene26060:CDS |
| GCCAGGGAAGTTGATCCCAC+AGG | 0.595302 | 7.4:+54222573 | MS.gene26060:CDS |
| CCACCAACAACAGCAACAGA+AGG | 0.598434 | 7.4:-54217288 | None:intergenic |
| CAAGTGCCCATAATCAGGAC+TGG | 0.599096 | 7.4:-54222998 | None:intergenic |
| CATCTACTGAAGCTTCAGCT+GGG | 0.601697 | 7.4:-54224065 | None:intergenic |
| TGTAAGGAAAGTGGTGTCAG+AGG | 0.603447 | 7.4:+54223960 | MS.gene26060:CDS |
| TTATTCCCTCAAGGTCCTGG+AGG | 0.605744 | 7.4:+54222858 | MS.gene26060:intron |
| GCATATCGATCTACATTCGA+GGG | 0.607637 | 7.4:-54224489 | None:intergenic |
| CCTTTGAGAGAAGCTTTGCA+AGG | 0.609489 | 7.4:-54223044 | None:intergenic |
| TTGAACTATATAAAGCAGCA+AGG | 0.610358 | 7.4:+54225232 | MS.gene26060:CDS |
| TATTCCCTCAAGGTCCTGGA+GGG | 0.613975 | 7.4:+54222859 | MS.gene26060:intron |
| TCAAGGAACACTTAGATGGA+GGG | 0.617530 | 7.4:+54223408 | MS.gene26060:CDS |
| AAGCTAGATTTGATGGACAA+AGG | 0.620185 | 7.4:+54222711 | MS.gene26060:CDS |
| TGGAGTCGGTAATTAGGGCA+AGG | 0.623592 | 7.4:+54223149 | MS.gene26060:CDS |
| TGAACTATATAAAGCAGCAA+GGG | 0.626349 | 7.4:+54225233 | MS.gene26060:CDS |
| TGTGTCGTCTTACATAGGAC+TGG | 0.629814 | 7.4:+54224542 | MS.gene26060:CDS |
| AATGTAGATCGATATGCAGA+AGG | 0.631524 | 7.4:+54224495 | MS.gene26060:CDS |
| GTTACAGGCGCCTCATTGAG+GGG | 0.634934 | 7.4:+54224022 | MS.gene26060:CDS |
| ATCCTCTAGGCAGAAAGTCA+CGG | 0.640388 | 7.4:-54218769 | None:intergenic |
| ACCCCAGCATCAAGAGCGAT+AGG | 0.641437 | 7.4:-54223244 | None:intergenic |
| TTTGCAGAAGATGACTACAA+TGG | 0.641861 | 7.4:+54217158 | None:intergenic |
| AAGGAAAGTGGTGTCAGAGG+CGG | 0.641946 | 7.4:+54223963 | MS.gene26060:CDS |
| GGAATCTTCATATCTAACTG+TGG | 0.645302 | 7.4:+54224416 | MS.gene26060:CDS |
| AAGACCCTGCAATGATGGAG+AGG | 0.645781 | 7.4:+54225187 | MS.gene26060:CDS |
| ACTGTACTTGGTGACTATGG+TGG | 0.646134 | 7.4:+54217222 | MS.gene26060:CDS |
| CATAGTAAATCGGTCTCAGG+CGG | 0.646210 | 7.4:+54222915 | MS.gene26060:CDS |
| CCGGAGACTACCTCAAGAAG+CGG | 0.649881 | 7.4:+54224446 | MS.gene26060:CDS |
| CAACCCAGGGATGTTGCAGA+CGG | 0.653678 | 7.4:-54222891 | None:intergenic |
| CGATTTACTATGCCAACCCA+GGG | 0.654057 | 7.4:-54222904 | None:intergenic |
| AGTTGCATAAGATGGAAAGT+GGG | 0.655548 | 7.4:+54218942 | MS.gene26060:CDS |
| AACCCAGAGACCCCTCAATG+AGG | 0.667384 | 7.4:-54224032 | None:intergenic |
| ACTCAAGAACACAATTCCGA+AGG | 0.668786 | 7.4:+54224575 | MS.gene26060:CDS |
| TATGGTTGTTGCTAGACACA+AGG | 0.669586 | 7.4:+54222957 | MS.gene26060:CDS |
| ATGAAACTGATCGAGTAACA+GGG | 0.669700 | 7.4:+54219740 | MS.gene26060:CDS |
| GGTCTGACTAAAGTGGCTGT+AGG | 0.671225 | 7.4:+54220536 | MS.gene26060:CDS |
| ACAGCCACTTTAGTCAGACC+GGG | 0.672585 | 7.4:-54220533 | None:intergenic |
| TAAATCTTTAGGCGGCCAGG+AGG | 0.687364 | 7.4:+54223853 | MS.gene26060:intron |
| GCGCCTGTAACCTTGCTCTG+GGG | 0.694173 | 7.4:-54224010 | None:intergenic |
| GAATTGTAGGGATTGTGACG+AGG | 0.696101 | 7.4:+54218903 | MS.gene26060:intron |
| AAAGTGGTGTCAGAGGCGGA+TGG | 0.697603 | 7.4:+54223967 | MS.gene26060:CDS |
| TTTCATCCTGAATTTCCTGG+CGG | 0.716608 | 7.4:-54219723 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 54217168 | 54225287 | 54217168 | ID=MS.gene26060 |
| chr7.4 | mRNA | 54217168 | 54225287 | 54217168 | ID=MS.gene26060.t1;Parent=MS.gene26060 |
| chr7.4 | exon | 54217168 | 54217314 | 54217168 | ID=MS.gene26060.t1.exon1;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54217168 | 54217314 | 54217168 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54218731 | 54218794 | 54218731 | ID=MS.gene26060.t1.exon2;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54218731 | 54218794 | 54218731 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54218912 | 54219019 | 54218912 | ID=MS.gene26060.t1.exon3;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54218912 | 54219019 | 54218912 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54219716 | 54219817 | 54219716 | ID=MS.gene26060.t1.exon4;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54219716 | 54219817 | 54219716 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54220507 | 54220557 | 54220507 | ID=MS.gene26060.t1.exon5;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54220507 | 54220557 | 54220507 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54220645 | 54220706 | 54220645 | ID=MS.gene26060.t1.exon6;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54220645 | 54220706 | 54220645 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54222504 | 54222594 | 54222504 | ID=MS.gene26060.t1.exon7;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54222504 | 54222594 | 54222504 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54222685 | 54222749 | 54222685 | ID=MS.gene26060.t1.exon8;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54222685 | 54222749 | 54222685 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54222871 | 54223065 | 54222871 | ID=MS.gene26060.t1.exon9;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54222871 | 54223065 | 54222871 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54223145 | 54223264 | 54223145 | ID=MS.gene26060.t1.exon10;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54223145 | 54223264 | 54223145 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54223359 | 54223429 | 54223359 | ID=MS.gene26060.t1.exon11;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54223359 | 54223429 | 54223359 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54223864 | 54224089 | 54223864 | ID=MS.gene26060.t1.exon12;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54223864 | 54224089 | 54223864 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54224175 | 54224225 | 54224175 | ID=MS.gene26060.t1.exon13;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54224175 | 54224225 | 54224175 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54224306 | 54224674 | 54224306 | ID=MS.gene26060.t1.exon14;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54224306 | 54224674 | 54224306 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| chr7.4 | exon | 54225159 | 54225287 | 54225159 | ID=MS.gene26060.t1.exon15;Parent=MS.gene26060.t1 |
| chr7.4 | CDS | 54225159 | 54225287 | 54225159 | ID=cds.MS.gene26060.t1;Parent=MS.gene26060.t1 |
| Gene Sequence |
| Protein sequence |
