Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056130.t1 | XP_013448440.1 | 98.2 | 617 | 10 | 1 | 1 | 616 | 1 | 617 | 0.00E+00 | 1182.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056130.t1 | Q9FNX5 | 82.1 | 624 | 104 | 1 | 1 | 616 | 1 | 624 | 1.0e-302 | 1040.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056130.t1 | A0A072TYG5 | 98.2 | 617 | 10 | 1 | 1 | 616 | 1 | 617 | 0.0e+00 | 1182.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050237 | MS.gene056130 | 0.858962 | 5.74E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056130 | MS.gene073953 | PPI |
| MS.gene056130 | MS.gene22300 | PPI |
| MS.gene056130 | MS.gene064936 | PPI |
| MS.gene056130 | MS.gene21671 | PPI |
| MS.gene056130 | MS.gene002248 | PPI |
| MS.gene056130 | MS.gene53578 | PPI |
| MS.gene056130 | MS.gene64242 | PPI |
| MS.gene056130 | MS.gene028493 | PPI |
| MS.gene056130 | MS.gene01221 | PPI |
| MS.gene056130 | MS.gene02205 | PPI |
| MS.gene056130 | MS.gene068015 | PPI |
| MS.gene056130 | MS.gene90230 | PPI |
| MS.gene056130 | MS.gene053588 | PPI |
| MS.gene056130 | MS.gene069595 | PPI |
| MS.gene056130 | MS.gene048935 | PPI |
| MS.gene056130 | MS.gene55806 | PPI |
| MS.gene056130 | MS.gene06079 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056130.t1 | MTR_7g451010 | 98.217 | 617 | 10 | 1 | 1 | 616 | 1 | 617 | 0.0 | 1242 |
| MS.gene056130.t1 | MTR_8g009510 | 84.772 | 637 | 76 | 2 | 1 | 616 | 1 | 637 | 0.0 | 1092 |
| MS.gene056130.t1 | MTR_8g105580 | 78.583 | 621 | 120 | 5 | 1 | 614 | 1 | 615 | 0.0 | 1014 |
| MS.gene056130.t1 | MTR_4g098920 | 76.471 | 612 | 136 | 3 | 4 | 614 | 1 | 605 | 0.0 | 996 |
| MS.gene056130.t1 | MTR_1g032550 | 75.929 | 619 | 139 | 3 | 1 | 614 | 1 | 614 | 0.0 | 991 |
| MS.gene056130.t1 | MTR_8g105580 | 79.174 | 581 | 108 | 5 | 1 | 574 | 1 | 575 | 0.0 | 952 |
| MS.gene056130.t1 | MTR_8g099550 | 67.921 | 611 | 193 | 1 | 4 | 614 | 1 | 608 | 0.0 | 915 |
| MS.gene056130.t1 | MTR_5g009150 | 67.537 | 613 | 197 | 1 | 4 | 616 | 1 | 611 | 0.0 | 909 |
| MS.gene056130.t1 | MTR_8g009510 | 83.962 | 530 | 64 | 2 | 108 | 616 | 1 | 530 | 0.0 | 899 |
| MS.gene056130.t1 | MTR_8g027675 | 67.758 | 611 | 193 | 2 | 4 | 614 | 1 | 607 | 0.0 | 893 |
| MS.gene056130.t1 | MTR_2g009690 | 38.028 | 497 | 286 | 6 | 7 | 495 | 24 | 506 | 3.96e-95 | 310 |
| MS.gene056130.t1 | MTR_4g093750 | 38.028 | 497 | 284 | 5 | 6 | 493 | 14 | 495 | 9.92e-95 | 306 |
| MS.gene056130.t1 | MTR_4g093750 | 37.876 | 499 | 286 | 5 | 6 | 494 | 14 | 498 | 6.02e-94 | 305 |
| MS.gene056130.t1 | MTR_4g134680 | 30.561 | 517 | 324 | 10 | 1 | 501 | 1 | 498 | 1.99e-64 | 226 |
| MS.gene056130.t1 | MTR_4g134680 | 30.561 | 517 | 324 | 10 | 1 | 501 | 1 | 498 | 6.15e-64 | 226 |
| MS.gene056130.t1 | MTR_4g134680 | 30.561 | 517 | 324 | 10 | 1 | 501 | 1 | 498 | 2.32e-63 | 225 |
| MS.gene056130.t1 | MTR_4g030140 | 30.233 | 516 | 330 | 7 | 1 | 501 | 1 | 501 | 4.07e-63 | 224 |
| MS.gene056130.t1 | MTR_4g134680 | 37.811 | 201 | 125 | 0 | 301 | 501 | 1 | 201 | 4.05e-37 | 146 |
| MS.gene056130.t1 | MTR_8g087750 | 34.494 | 316 | 183 | 9 | 40 | 346 | 71 | 371 | 3.66e-32 | 132 |
| MS.gene056130.t1 | MTR_8g087770 | 35.689 | 283 | 162 | 7 | 40 | 316 | 68 | 336 | 6.56e-32 | 131 |
| MS.gene056130.t1 | MTR_8g463270 | 33.333 | 186 | 119 | 2 | 40 | 220 | 46 | 231 | 5.68e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056130.t1 | AT3G60190 | 82.051 | 624 | 104 | 1 | 1 | 616 | 1 | 624 | 0.0 | 1089 |
| MS.gene056130.t1 | AT1G14830 | 78.191 | 619 | 124 | 4 | 1 | 614 | 1 | 613 | 0.0 | 1011 |
| MS.gene056130.t1 | AT2G44590 | 77.687 | 614 | 134 | 2 | 4 | 616 | 1 | 612 | 0.0 | 1006 |
| MS.gene056130.t1 | AT2G44590 | 74.919 | 614 | 134 | 3 | 4 | 616 | 1 | 595 | 0.0 | 961 |
| MS.gene056130.t1 | AT2G44590 | 74.797 | 615 | 134 | 4 | 4 | 616 | 1 | 596 | 0.0 | 957 |
| MS.gene056130.t1 | AT5G42080 | 68.412 | 611 | 190 | 1 | 4 | 614 | 1 | 608 | 0.0 | 911 |
| MS.gene056130.t1 | AT5G42080 | 68.412 | 611 | 190 | 1 | 4 | 614 | 1 | 608 | 0.0 | 911 |
| MS.gene056130.t1 | AT5G42080 | 67.700 | 613 | 189 | 2 | 4 | 616 | 1 | 604 | 0.0 | 898 |
| MS.gene056130.t1 | AT3G61760 | 65.798 | 614 | 205 | 3 | 4 | 616 | 1 | 610 | 0.0 | 882 |
| MS.gene056130.t1 | AT3G61760 | 66.958 | 572 | 184 | 3 | 4 | 574 | 1 | 568 | 0.0 | 837 |
| MS.gene056130.t1 | AT5G42080 | 73.611 | 432 | 111 | 1 | 4 | 435 | 1 | 429 | 0.0 | 692 |
| MS.gene056130.t1 | AT3G61760 | 70.759 | 448 | 126 | 3 | 4 | 450 | 1 | 444 | 0.0 | 690 |
| MS.gene056130.t1 | AT2G14120 | 37.972 | 503 | 282 | 8 | 6 | 493 | 20 | 507 | 1.01e-94 | 307 |
| MS.gene056130.t1 | AT2G14120 | 37.822 | 505 | 284 | 8 | 6 | 495 | 20 | 509 | 2.64e-94 | 307 |
| MS.gene056130.t1 | AT2G14120 | 37.822 | 505 | 284 | 8 | 6 | 495 | 20 | 509 | 2.81e-94 | 307 |
| MS.gene056130.t1 | AT2G14120 | 36.278 | 532 | 280 | 9 | 6 | 493 | 20 | 536 | 1.76e-90 | 297 |
| MS.gene056130.t1 | AT4G33650 | 36.853 | 502 | 290 | 7 | 6 | 494 | 36 | 523 | 2.44e-89 | 294 |
| MS.gene056130.t1 | AT4G33650 | 36.853 | 502 | 290 | 7 | 6 | 494 | 36 | 523 | 2.68e-89 | 294 |
| MS.gene056130.t1 | AT1G59610 | 31.335 | 517 | 320 | 11 | 1 | 501 | 1 | 498 | 2.33e-64 | 228 |
| MS.gene056130.t1 | AT1G10290 | 31.721 | 517 | 318 | 10 | 1 | 501 | 1 | 498 | 2.36e-64 | 228 |
| MS.gene056130.t1 | AT1G60500 | 26.206 | 622 | 388 | 22 | 40 | 612 | 65 | 664 | 2.27e-42 | 162 |
| MS.gene056130.t1 | AT1G60530 | 40.664 | 241 | 124 | 6 | 40 | 275 | 62 | 288 | 3.56e-39 | 146 |
| MS.gene056130.t1 | AT1G53140 | 27.300 | 337 | 198 | 10 | 40 | 340 | 62 | 387 | 1.83e-19 | 93.2 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGCACTTGGCCAATAAAA+TGG | 0.183994 | 7.3:+54677850 | MS.gene056130:CDS |
| AGGAGAAAGTTCACTGATTT+TGG | 0.186837 | 7.3:+54673837 | MS.gene056130:CDS |
| GCGCCTCATTGAGGGGTCTC+TGG | 0.201390 | 7.3:+54678868 | MS.gene056130:CDS |
| AATCATTTCTACGCACAAAT+AGG | 0.205517 | 7.3:+54679481 | MS.gene056130:CDS |
| TTTGCAACCAGTCCTGATTA+TGG | 0.226321 | 7.3:+54677830 | MS.gene056130:CDS |
| GGGTCTCTGGGTTACTTTAA+AGG | 0.232827 | 7.3:+54678881 | MS.gene056130:CDS |
| TTGAAATTTGTGCAGAGTTC+AGG | 0.252031 | 7.3:+54673555 | MS.gene056130:intron |
| TTCAGGGAAGTCTTCAGTTT+TGG | 0.271410 | 7.3:+54673572 | MS.gene056130:CDS |
| AGCACTTGGAGTCGGTAATT+AGG | 0.283809 | 7.3:+54677982 | MS.gene056130:intron |
| ATGAAATTGATTCTGTTTCT+TGG | 0.284941 | 7.3:+54680095 | MS.gene056130:CDS |
| CTTCCTTCTGTTGCTGTTGT+TGG | 0.291548 | 7.3:+54672012 | MS.gene056130:CDS |
| CTTGGTCCGCCAGGAAATTC+AGG | 0.312501 | 7.3:+54674556 | MS.gene056130:CDS |
| GTTGACAAAGCTAGATTTGA+TGG | 0.323107 | 7.3:+54677543 | MS.gene056130:CDS |
| CAGTTTCATCCTGAATTTCC+TGG | 0.329548 | 7.3:-54674565 | None:intergenic |
| GATGAAACTGATCGAGTAAC+AGG | 0.332067 | 7.3:+54674578 | MS.gene056130:CDS |
| ACACCACTTTCCTTACATTC+TGG | 0.338475 | 7.3:-54678793 | None:intergenic |
| GATATGCAGAAGGTCATTTC+AGG | 0.343425 | 7.3:+54679344 | MS.gene056130:CDS |
| TGTACTGTGCTTGGTGACTA+TGG | 0.343451 | 7.3:+54671946 | MS.gene056130:CDS |
| ATCATTTCTACGCACAAATA+GGG | 0.346733 | 7.3:+54679482 | MS.gene056130:CDS |
| ATCTAACTGTGGATTTCTTC+CGG | 0.348448 | 7.3:+54679266 | MS.gene056130:CDS |
| TGTTGCTGTTGTTGGTGGTC+AGG | 0.349260 | 7.3:+54672020 | MS.gene056130:CDS |
| ATTGCTAGAATGATGGAATT+AGG | 0.350123 | 7.3:-54677343 | None:intergenic |
| TTGCAACCAGTCCTGATTAT+GGG | 0.353297 | 7.3:+54677831 | MS.gene056130:CDS |
| GCTAGTTCAGCTTGAAAAGT+TGG | 0.353444 | 7.3:-54679160 | None:intergenic |
| AGGCGCCTGTAACCTTGCTC+TGG | 0.357650 | 7.3:-54678851 | None:intergenic |
| TTGCCCCAGAGCAAGGTTAC+AGG | 0.358657 | 7.3:+54678846 | MS.gene056130:CDS |
| GACTATGGTGGTGGTGATGA+TGG | 0.359929 | 7.3:+54671961 | MS.gene056130:CDS |
| TGTTCAAGACATTGAAGTTA+TGG | 0.361218 | 7.3:+54675503 | MS.gene056130:CDS |
| AGACCTATCGCTCTTGATGC+TGG | 0.362848 | 7.3:+54678080 | MS.gene056130:CDS |
| TTGGCCAAGTGCCCATAATC+AGG | 0.367355 | 7.3:-54677842 | None:intergenic |
| ACTACAATGGAGAGTTTGAT+TGG | 0.371916 | 7.3:+54671898 | MS.gene056130:CDS |
| GCACTTGGAGTCGGTAATTA+GGG | 0.377053 | 7.3:+54677983 | MS.gene056130:intron |
| TGAAATTGATTCTGTTTCTT+GGG | 0.377377 | 7.3:+54680096 | MS.gene056130:CDS |
| GGAACACTTTCTCTTCTCTC+TGG | 0.379441 | 7.3:+54671983 | MS.gene056130:CDS |
| ATGCTAAGATGAATAGGAAT+AGG | 0.384278 | 7.3:-54674620 | None:intergenic |
| GACTTTCTGCCTAGAGGATC+AGG | 0.389564 | 7.3:+54673612 | MS.gene056130:CDS |
| ACTCTAGGTGAAAGGACATT+TGG | 0.398586 | 7.3:+54677517 | MS.gene056130:intron |
| CCTTCTGTTGCTGTTGTTGG+TGG | 0.404581 | 7.3:+54672015 | MS.gene056130:CDS |
| CTAGTTCAGCTTGAAAAGTT+GGG | 0.414034 | 7.3:-54679159 | None:intergenic |
| CTGATGCAATTAAACTTGCC+AGG | 0.418775 | 7.3:+54677395 | MS.gene056130:CDS |
| GAATAGATGCTAAGATGAAT+AGG | 0.419287 | 7.3:-54674626 | None:intergenic |
| GACCTATCGCTCTTGATGCT+GGG | 0.420252 | 7.3:+54678081 | MS.gene056130:CDS |
| GGAGACAACAATGTGCAAAA+AGG | 0.428130 | 7.3:+54680047 | MS.gene056130:CDS |
| TTTATTAAAGATGTTATACT+AGG | 0.435820 | 7.3:-54678014 | None:intergenic |
| AGAAGTTGCTATGTCTTGAT+TGG | 0.441116 | 7.3:-54677374 | None:intergenic |
| CAGTGAACTTTCTCCTTGGC+AGG | 0.442028 | 7.3:-54673830 | None:intergenic |
| GAAGGCTGTTGTTTATTGTC+AGG | 0.443175 | 7.3:+54679432 | MS.gene056130:CDS |
| CTTACCGTCTGCAACATCCC+TGG | 0.445527 | 7.3:+54677726 | MS.gene056130:CDS |
| CAAATGCACGGCAAAGTTCA+AGG | 0.452298 | 7.3:-54678215 | None:intergenic |
| ATCTTTCTCTCCAGAATGTA+AGG | 0.453051 | 7.3:+54678783 | MS.gene056130:CDS |
| GGGCACTTGGCCAATAAAAT+GGG | 0.455043 | 7.3:+54677851 | MS.gene056130:CDS |
| TGTCTCCTCTCCATCAATGC+AGG | 0.455662 | 7.3:-54680031 | None:intergenic |
| TGAAATTTGTGCAGAGTTCA+GGG | 0.456886 | 7.3:+54673556 | MS.gene056130:intron |
| AGAGAAAGATGACGATCAAA+TGG | 0.463028 | 7.3:-54678770 | None:intergenic |
| GGCGCCTGTAACCTTGCTCT+GGG | 0.466555 | 7.3:-54678850 | None:intergenic |
| CGGGTAAATCAATCAAGGTT+AGG | 0.467672 | 7.3:-54675353 | None:intergenic |
| ATATTCAAGGAACACTTAGA+TGG | 0.469598 | 7.3:+54678243 | MS.gene056130:CDS |
| TTAGAAAGGTTTCGTGAAGA+AGG | 0.471540 | 7.3:+54679202 | MS.gene056130:CDS |
| CGCCTCATTGAGGGGTCTCT+GGG | 0.477670 | 7.3:+54678869 | MS.gene056130:CDS |
| GCATCTACTGAAGCTTCAGC+TGG | 0.478686 | 7.3:-54678905 | None:intergenic |
| GGACGAAGACCCTGCATTGA+TGG | 0.481343 | 7.3:+54680021 | MS.gene056130:CDS |
| TGCATTTGAAAGGATATTCA+AGG | 0.481351 | 7.3:+54678230 | MS.gene056130:CDS |
| GTTGCTATGTCTTGATTGGC+TGG | 0.482150 | 7.3:-54677370 | None:intergenic |
| GGTTACAGGCGCCTCATTGA+GGG | 0.487700 | 7.3:+54678860 | MS.gene056130:CDS |
| CCTGGGTTGGCATAGTAAAT+CGG | 0.488986 | 7.3:+54677744 | MS.gene056130:CDS |
| GAAATCAATAGCTGAAACTC+AGG | 0.489125 | 7.3:+54679043 | MS.gene056130:CDS |
| CGATCTACATTCGAGGGAGC+AGG | 0.491562 | 7.3:-54679322 | None:intergenic |
| CCTTGCAAAGCTTCTCTCAA+AGG | 0.492876 | 7.3:+54677883 | MS.gene056130:CDS |
| GAACACTTTCTCTTCTCTCT+GGG | 0.493094 | 7.3:+54671984 | MS.gene056130:CDS |
| TATTGCAGCCTTGGTCCGCC+AGG | 0.495170 | 7.3:+54674547 | MS.gene056130:intron |
| AACTTTGCCGTGCATTTGAA+AGG | 0.496505 | 7.3:+54678220 | MS.gene056130:CDS |
| TTACCGTCTGCAACATCCCT+GGG | 0.497480 | 7.3:+54677727 | MS.gene056130:CDS |
| TTATATATCCTGTCACCTCC+TGG | 0.499497 | 7.3:-54678707 | None:intergenic |
| TACAGCCACTTTAGTCAGAC+CGG | 0.506020 | 7.3:-54675373 | None:intergenic |
| TGACAATAAACAACAGCCTT+CGG | 0.508171 | 7.3:-54679430 | None:intergenic |
| CTACAATGGAGAGTTTGATT+GGG | 0.508529 | 7.3:+54671899 | MS.gene056130:CDS |
| TGGCATAGTAAATCGGTCTC+AGG | 0.511534 | 7.3:+54677751 | MS.gene056130:CDS |
| AGGTTACAGGCGCCTCATTG+AGG | 0.512010 | 7.3:+54678859 | MS.gene056130:CDS |
| CGGCAAATGAGGCTTTAGAA+AGG | 0.512702 | 7.3:+54679188 | MS.gene056130:CDS |
| CTGAATTTCCTGGCGGACCA+AGG | 0.515227 | 7.3:-54674555 | None:intergenic |
| CCCTCAAGGTCCTGGAGGGA+AGG | 0.520793 | 7.3:+54677702 | MS.gene056130:intron |
| GTCTCCTCTCCATCAATGCA+GGG | 0.520884 | 7.3:-54680030 | None:intergenic |
| GACGGTAAGACCTTCCCTCC+AGG | 0.521101 | 7.3:-54677712 | None:intergenic |
| TTTAATAAACAAAAGCATTG+AGG | 0.522050 | 7.3:+54678028 | MS.gene056130:CDS |
| CTGAGTTTCTTCACCTGCCA+AGG | 0.526535 | 7.3:+54673817 | MS.gene056130:CDS |
| AAATCAGTGAACTTTCTCCT+TGG | 0.527744 | 7.3:-54673834 | None:intergenic |
| CAGTCCTGATTATGGGCACT+TGG | 0.529844 | 7.3:+54677838 | MS.gene056130:CDS |
| GATTGTGACGAGGCGTCCAT+TGG | 0.530252 | 7.3:+54673752 | MS.gene056130:CDS |
| CCTCAAGAAGCGGAGCAAGC+TGG | 0.530747 | 7.3:+54679295 | MS.gene056130:CDS |
| GAGAAGCTTTGCAAGGTACT+CGG | 0.532158 | 7.3:-54677876 | None:intergenic |
| ACCTGTGGGATCAACTTCCC+TGG | 0.533555 | 7.3:-54677413 | None:intergenic |
| AATCAGAGATGGATCATCTC+GGG | 0.534828 | 7.3:+54678057 | MS.gene056130:CDS |
| TGCATATCGATCTACATTCG+AGG | 0.535283 | 7.3:-54679329 | None:intergenic |
| TAAACAACTATCTCTAATGT+TGG | 0.535646 | 7.3:+54680000 | MS.gene056130:CDS |
| CAGTTGCATAAGATGGAAAG+TGG | 0.541125 | 7.3:+54673780 | MS.gene056130:CDS |
| ACTAGCTAAAGCGGCAAATG+AGG | 0.542689 | 7.3:+54679177 | MS.gene056130:CDS |
| CACTTGATTGCCCCAGAGCA+AGG | 0.543548 | 7.3:+54678839 | MS.gene056130:CDS |
| CAGAGAGCTTGTACTGTGCT+TGG | 0.545322 | 7.3:+54671937 | MS.gene056130:CDS |
| TTACCTTCTCAACATAAGAT+CGG | 0.547247 | 7.3:-54675527 | None:intergenic |
| TCAAGCTGAACTAGCTAAAG+CGG | 0.548233 | 7.3:+54679168 | MS.gene056130:CDS |
| TGAATATCCTTTCAAATGCA+CGG | 0.549122 | 7.3:-54678227 | None:intergenic |
| CCGCTTCTTGAGGTAGTCTC+CGG | 0.550348 | 7.3:-54679285 | None:intergenic |
| ACTATGGTGGTGGTGATGAT+GGG | 0.550813 | 7.3:+54671962 | MS.gene056130:CDS |
| GGAAGCTTTCGTAAGGCAGA+TGG | 0.551112 | 7.3:-54678749 | None:intergenic |
| AAAGTCAAACCTGATCCTCT+AGG | 0.551447 | 7.3:-54673621 | None:intergenic |
| TTAGGCGGCCAGGAGGTGAC+AGG | 0.553863 | 7.3:+54678699 | MS.gene056130:intron |
| TCAAATGTGTCGTCTTACAT+AGG | 0.555051 | 7.3:+54679376 | MS.gene056130:CDS |
| CCAGCTTGCTCCGCTTCTTG+AGG | 0.556108 | 7.3:-54679295 | None:intergenic |
| GTGCTTGGTGACTATGGTGG+TGG | 0.557786 | 7.3:+54671952 | MS.gene056130:CDS |
| CTAACCTTGATTGATTTACC+CGG | 0.559268 | 7.3:+54675354 | MS.gene056130:CDS |
| TGATGCAATTAAACTTGCCA+GGG | 0.560909 | 7.3:+54677396 | MS.gene056130:CDS |
| TTATGCAACTGCAGCACCAA+TGG | 0.561847 | 7.3:-54673768 | None:intergenic |
| AATGTCTTGAACAATACTCT+CGG | 0.562200 | 7.3:-54675493 | None:intergenic |
| CCGATTTACTATGCCAACCC+AGG | 0.563823 | 7.3:-54677744 | None:intergenic |
| GAATCAGAGATGGATCATCT+CGG | 0.566336 | 7.3:+54678056 | MS.gene056130:CDS |
| CAGACCGGGTAAATCAATCA+AGG | 0.567244 | 7.3:-54675358 | None:intergenic |
| ACCTATCGCTCTTGATGCTG+GGG | 0.568094 | 7.3:+54678082 | MS.gene056130:CDS |
| TGAGGAACTTGAATCAGAGA+TGG | 0.569985 | 7.3:+54678046 | MS.gene056130:CDS |
| GGTCCGATCTTATGTTGAGA+AGG | 0.570113 | 7.3:+54675524 | MS.gene056130:CDS |
| CGTCTGCAACATCCCTGGGT+TGG | 0.571130 | 7.3:+54677731 | MS.gene056130:CDS |
| TTTACCCGGTCTGACTAAAG+TGG | 0.574857 | 7.3:+54675368 | MS.gene056130:CDS |
| TCTCCAGAATGTAAGGAAAG+TGG | 0.575323 | 7.3:+54678790 | MS.gene056130:CDS |
| TTGTCTTAAAAGAACTCGTG+AGG | 0.575595 | 7.3:+54679021 | MS.gene056130:CDS |
| ATGTCTTGAACAATACTCTC+GGG | 0.576905 | 7.3:-54675492 | None:intergenic |
| GGCCGTGACTTTCTGCCTAG+AGG | 0.577600 | 7.3:+54673606 | MS.gene056130:CDS |
| TGGAGATATTGCTAGAATGA+TGG | 0.584007 | 7.3:-54677350 | None:intergenic |
| TAATGATCACTCTAGGTGAA+AGG | 0.587318 | 7.3:+54677509 | MS.gene056130:intron |
| TGCTCTGGGGCAATCAAGTG+AGG | 0.587942 | 7.3:-54678836 | None:intergenic |
| GGTGCTGCAGTTGCATAAGA+TGG | 0.588337 | 7.3:+54673773 | MS.gene056130:CDS |
| CTTAGCATCTATTCTCCGAA+TGG | 0.589065 | 7.3:+54674635 | MS.gene056130:CDS |
| ATCAAATGGAAGCTTTCGTA+AGG | 0.590630 | 7.3:-54678756 | None:intergenic |
| TTCAAGGAACACTTAGATGG+AGG | 0.592755 | 7.3:+54678246 | MS.gene056130:CDS |
| ATTTCTGTAGCACTTGGAGT+CGG | 0.594073 | 7.3:+54677974 | MS.gene056130:intron |
| CGCACAAATAGGGAAGAAAG+AGG | 0.595022 | 7.3:+54679492 | MS.gene056130:CDS |
| GCCAGGGAAGTTGATCCCAC+AGG | 0.595302 | 7.3:+54677412 | MS.gene056130:CDS |
| CCACCAACAACAGCAACAGA+AGG | 0.598434 | 7.3:-54672015 | None:intergenic |
| CAAGTGCCCATAATCAGGAC+TGG | 0.599096 | 7.3:-54677837 | None:intergenic |
| CATCTACTGAAGCTTCAGCT+GGG | 0.601697 | 7.3:-54678904 | None:intergenic |
| TGTAAGGAAAGTGGTGTCAG+AGG | 0.603447 | 7.3:+54678799 | MS.gene056130:CDS |
| TTATTCCCTCAAGGTCCTGG+AGG | 0.605744 | 7.3:+54677697 | MS.gene056130:intron |
| GCATATCGATCTACATTCGA+GGG | 0.607637 | 7.3:-54679328 | None:intergenic |
| CCTTTGAGAGAAGCTTTGCA+AGG | 0.609489 | 7.3:-54677883 | None:intergenic |
| TTGAACTATATAAAGCAGCA+AGG | 0.610358 | 7.3:+54680071 | MS.gene056130:CDS |
| TATTCCCTCAAGGTCCTGGA+GGG | 0.613975 | 7.3:+54677698 | MS.gene056130:intron |
| TCAAGGAACACTTAGATGGA+GGG | 0.617530 | 7.3:+54678247 | MS.gene056130:CDS |
| AAGACCCTGCATTGATGGAG+AGG | 0.619899 | 7.3:+54680026 | MS.gene056130:CDS |
| AAGCTAGATTTGATGGACAA+AGG | 0.620185 | 7.3:+54677550 | MS.gene056130:CDS |
| TGGAGTCGGTAATTAGGGCA+AGG | 0.623592 | 7.3:+54677988 | MS.gene056130:CDS |
| TGAACTATATAAAGCAGCAA+GGG | 0.626349 | 7.3:+54680072 | MS.gene056130:CDS |
| TGTGTCGTCTTACATAGGAC+TGG | 0.629814 | 7.3:+54679381 | MS.gene056130:CDS |
| AATGTAGATCGATATGCAGA+AGG | 0.631524 | 7.3:+54679334 | MS.gene056130:CDS |
| GTTACAGGCGCCTCATTGAG+GGG | 0.634934 | 7.3:+54678861 | MS.gene056130:CDS |
| ATCCTCTAGGCAGAAAGTCA+CGG | 0.640388 | 7.3:-54673608 | None:intergenic |
| ACCCCAGCATCAAGAGCGAT+AGG | 0.641437 | 7.3:-54678083 | None:intergenic |
| TTTGCAGAAGATGACTACAA+TGG | 0.641861 | 7.3:+54671885 | None:intergenic |
| AAGGAAAGTGGTGTCAGAGG+CGG | 0.641946 | 7.3:+54678802 | MS.gene056130:CDS |
| GGAATCTTCATATCTAACTG+TGG | 0.645302 | 7.3:+54679255 | MS.gene056130:CDS |
| CATAGTAAATCGGTCTCAGG+CGG | 0.646210 | 7.3:+54677754 | MS.gene056130:CDS |
| CCGGAGACTACCTCAAGAAG+CGG | 0.649881 | 7.3:+54679285 | MS.gene056130:CDS |
| CAACCCAGGGATGTTGCAGA+CGG | 0.653678 | 7.3:-54677730 | None:intergenic |
| CGATTTACTATGCCAACCCA+GGG | 0.654057 | 7.3:-54677743 | None:intergenic |
| AGTTGCATAAGATGGAAAGT+GGG | 0.655548 | 7.3:+54673781 | MS.gene056130:CDS |
| AACCCAGAGACCCCTCAATG+AGG | 0.667384 | 7.3:-54678871 | None:intergenic |
| ACTCAAGAACACAATTCCGA+AGG | 0.668786 | 7.3:+54679414 | MS.gene056130:CDS |
| TATGGTTGTTGCTAGACACA+AGG | 0.669586 | 7.3:+54677796 | MS.gene056130:CDS |
| ATGAAACTGATCGAGTAACA+GGG | 0.669700 | 7.3:+54674579 | MS.gene056130:CDS |
| GGTCTGACTAAAGTGGCTGT+AGG | 0.671225 | 7.3:+54675375 | MS.gene056130:CDS |
| ACAGCCACTTTAGTCAGACC+GGG | 0.672585 | 7.3:-54675372 | None:intergenic |
| ACTGTGCTTGGTGACTATGG+TGG | 0.679527 | 7.3:+54671949 | MS.gene056130:CDS |
| TAAATCTTTAGGCGGCCAGG+AGG | 0.687364 | 7.3:+54678692 | MS.gene056130:intron |
| GCGCCTGTAACCTTGCTCTG+GGG | 0.694173 | 7.3:-54678849 | None:intergenic |
| GAATTGTAGGGATTGTGACG+AGG | 0.696101 | 7.3:+54673742 | MS.gene056130:intron |
| AAAGTGGTGTCAGAGGCGGA+TGG | 0.697603 | 7.3:+54678806 | MS.gene056130:CDS |
| TTTCATCCTGAATTTCCTGG+CGG | 0.716608 | 7.3:-54674562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 54671895 | 54680126 | 54671895 | ID=MS.gene056130 |
| chr7.3 | mRNA | 54671895 | 54680126 | 54671895 | ID=MS.gene056130.t1;Parent=MS.gene056130 |
| chr7.3 | exon | 54671895 | 54672041 | 54671895 | ID=MS.gene056130.t1.exon1;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54671895 | 54672041 | 54671895 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54673570 | 54673633 | 54673570 | ID=MS.gene056130.t1.exon2;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54673570 | 54673633 | 54673570 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54673751 | 54673858 | 54673751 | ID=MS.gene056130.t1.exon3;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54673751 | 54673858 | 54673751 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54674555 | 54674656 | 54674555 | ID=MS.gene056130.t1.exon4;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54674555 | 54674656 | 54674555 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54675346 | 54675396 | 54675346 | ID=MS.gene056130.t1.exon5;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54675346 | 54675396 | 54675346 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54675484 | 54675545 | 54675484 | ID=MS.gene056130.t1.exon6;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54675484 | 54675545 | 54675484 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54677343 | 54677433 | 54677343 | ID=MS.gene056130.t1.exon7;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54677343 | 54677433 | 54677343 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54677524 | 54677588 | 54677524 | ID=MS.gene056130.t1.exon8;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54677524 | 54677588 | 54677524 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54677710 | 54677904 | 54677710 | ID=MS.gene056130.t1.exon9;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54677710 | 54677904 | 54677710 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54677984 | 54678103 | 54677984 | ID=MS.gene056130.t1.exon10;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54677984 | 54678103 | 54677984 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54678198 | 54678268 | 54678198 | ID=MS.gene056130.t1.exon11;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54678198 | 54678268 | 54678198 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54678703 | 54678928 | 54678703 | ID=MS.gene056130.t1.exon12;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54678703 | 54678928 | 54678703 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54679014 | 54679064 | 54679014 | ID=MS.gene056130.t1.exon13;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54679014 | 54679064 | 54679014 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54679145 | 54679513 | 54679145 | ID=MS.gene056130.t1.exon14;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54679145 | 54679513 | 54679145 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| chr7.3 | exon | 54679998 | 54680126 | 54679998 | ID=MS.gene056130.t1.exon15;Parent=MS.gene056130.t1 |
| chr7.3 | CDS | 54679998 | 54680126 | 54679998 | ID=cds.MS.gene056130.t1;Parent=MS.gene056130.t1 |
| Gene Sequence |
| Protein sequence |
