Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022695.t1 | XP_003626828.1 | 98.6 | 637 | 9 | 0 | 1 | 637 | 1 | 637 | 0.00E+00 | 1194.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022695.t1 | Q9FNX5 | 77.9 | 637 | 128 | 1 | 1 | 637 | 1 | 624 | 5.9e-293 | 1007.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022695.t1 | G7LDH0 | 98.6 | 637 | 9 | 0 | 1 | 637 | 1 | 637 | 0.0e+00 | 1194.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022695 | MS.gene90230 | PPI |
| MS.gene022695 | MS.gene053588 | PPI |
| MS.gene022695 | MS.gene069595 | PPI |
| MS.gene022695 | MS.gene048935 | PPI |
| MS.gene022695 | MS.gene55806 | PPI |
| MS.gene022695 | MS.gene06079 | PPI |
| MS.gene022695 | MS.gene073953 | PPI |
| MS.gene022695 | MS.gene22300 | PPI |
| MS.gene022695 | MS.gene064936 | PPI |
| MS.gene022695 | MS.gene21671 | PPI |
| MS.gene90230 | MS.gene022695 | PPI |
| MS.gene022695 | MS.gene002248 | PPI |
| MS.gene022695 | MS.gene53578 | PPI |
| MS.gene022695 | MS.gene64242 | PPI |
| MS.gene022695 | MS.gene028493 | PPI |
| MS.gene022695 | MS.gene01221 | PPI |
| MS.gene022695 | MS.gene02205 | PPI |
| MS.gene022695 | MS.gene068015 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022695.t1 | MTR_8g009510 | 98.430 | 637 | 10 | 0 | 1 | 637 | 1 | 637 | 0.0 | 1297 |
| MS.gene022695.t1 | MTR_8g009510 | 98.302 | 530 | 9 | 0 | 108 | 637 | 1 | 530 | 0.0 | 1078 |
| MS.gene022695.t1 | MTR_7g451010 | 84.458 | 637 | 79 | 1 | 1 | 637 | 1 | 617 | 0.0 | 1078 |
| MS.gene022695.t1 | MTR_8g105580 | 76.063 | 635 | 132 | 3 | 1 | 635 | 1 | 615 | 0.0 | 1004 |
| MS.gene022695.t1 | MTR_1g032550 | 72.913 | 635 | 151 | 2 | 1 | 635 | 1 | 614 | 0.0 | 972 |
| MS.gene022695.t1 | MTR_4g098920 | 72.152 | 632 | 149 | 2 | 4 | 635 | 1 | 605 | 0.0 | 970 |
| MS.gene022695.t1 | MTR_8g105580 | 76.975 | 595 | 117 | 3 | 1 | 595 | 1 | 575 | 0.0 | 949 |
| MS.gene022695.t1 | MTR_8g099550 | 65.823 | 632 | 192 | 2 | 4 | 635 | 1 | 608 | 0.0 | 897 |
| MS.gene022695.t1 | MTR_5g009150 | 65.142 | 634 | 198 | 2 | 4 | 637 | 1 | 611 | 0.0 | 888 |
| MS.gene022695.t1 | MTR_8g027675 | 65.665 | 632 | 192 | 3 | 4 | 635 | 1 | 607 | 0.0 | 879 |
| MS.gene022695.t1 | MTR_2g009690 | 38.306 | 496 | 282 | 5 | 7 | 493 | 24 | 504 | 4.05e-97 | 316 |
| MS.gene022695.t1 | MTR_4g093750 | 38.431 | 497 | 282 | 5 | 6 | 493 | 14 | 495 | 4.80e-96 | 310 |
| MS.gene022695.t1 | MTR_4g093750 | 38.353 | 498 | 283 | 5 | 6 | 493 | 14 | 497 | 3.31e-95 | 309 |
| MS.gene022695.t1 | MTR_4g134680 | 30.695 | 518 | 322 | 11 | 1 | 501 | 1 | 498 | 4.13e-68 | 236 |
| MS.gene022695.t1 | MTR_4g134680 | 30.695 | 518 | 322 | 11 | 1 | 501 | 1 | 498 | 1.44e-67 | 236 |
| MS.gene022695.t1 | MTR_4g030140 | 30.948 | 517 | 325 | 9 | 1 | 501 | 1 | 501 | 4.28e-67 | 236 |
| MS.gene022695.t1 | MTR_4g134680 | 30.695 | 518 | 322 | 11 | 1 | 501 | 1 | 498 | 5.15e-67 | 236 |
| MS.gene022695.t1 | MTR_4g134680 | 38.806 | 201 | 123 | 0 | 301 | 501 | 1 | 201 | 2.16e-40 | 156 |
| MS.gene022695.t1 | MTR_8g087750 | 34.494 | 316 | 183 | 9 | 40 | 346 | 71 | 371 | 2.59e-31 | 130 |
| MS.gene022695.t1 | MTR_8g087770 | 34.906 | 318 | 179 | 10 | 40 | 346 | 68 | 368 | 5.30e-31 | 129 |
| MS.gene022695.t1 | MTR_8g463270 | 33.161 | 193 | 110 | 4 | 40 | 220 | 46 | 231 | 9.81e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022695.t1 | AT3G60190 | 78.336 | 637 | 125 | 2 | 1 | 637 | 1 | 624 | 0.0 | 1057 |
| MS.gene022695.t1 | AT1G14830 | 75.276 | 635 | 135 | 2 | 1 | 635 | 1 | 613 | 0.0 | 999 |
| MS.gene022695.t1 | AT2G44590 | 71.924 | 634 | 156 | 3 | 4 | 637 | 1 | 612 | 0.0 | 958 |
| MS.gene022695.t1 | AT2G44590 | 69.243 | 634 | 156 | 4 | 4 | 637 | 1 | 595 | 0.0 | 915 |
| MS.gene022695.t1 | AT2G44590 | 69.134 | 635 | 156 | 5 | 4 | 637 | 1 | 596 | 0.0 | 910 |
| MS.gene022695.t1 | AT5G42080 | 65.665 | 632 | 193 | 2 | 4 | 635 | 1 | 608 | 0.0 | 889 |
| MS.gene022695.t1 | AT5G42080 | 65.665 | 632 | 193 | 2 | 4 | 635 | 1 | 608 | 0.0 | 889 |
| MS.gene022695.t1 | AT3G61760 | 64.929 | 633 | 196 | 4 | 4 | 635 | 1 | 608 | 0.0 | 878 |
| MS.gene022695.t1 | AT5G42080 | 65.032 | 632 | 191 | 3 | 4 | 635 | 1 | 602 | 0.0 | 873 |
| MS.gene022695.t1 | AT3G61760 | 65.936 | 593 | 176 | 4 | 4 | 595 | 1 | 568 | 0.0 | 833 |
| MS.gene022695.t1 | AT3G61760 | 71.652 | 448 | 122 | 3 | 4 | 450 | 1 | 444 | 0.0 | 690 |
| MS.gene022695.t1 | AT5G42080 | 72.917 | 432 | 114 | 1 | 4 | 435 | 1 | 429 | 0.0 | 681 |
| MS.gene022695.t1 | AT2G14120 | 38.569 | 503 | 279 | 8 | 6 | 493 | 20 | 507 | 6.80e-98 | 316 |
| MS.gene022695.t1 | AT2G14120 | 38.569 | 503 | 279 | 8 | 6 | 493 | 20 | 507 | 2.70e-97 | 315 |
| MS.gene022695.t1 | AT2G14120 | 38.569 | 503 | 279 | 8 | 6 | 493 | 20 | 507 | 3.03e-97 | 315 |
| MS.gene022695.t1 | AT2G14120 | 36.654 | 532 | 278 | 9 | 6 | 493 | 20 | 536 | 3.06e-93 | 305 |
| MS.gene022695.t1 | AT4G33650 | 37.052 | 502 | 287 | 7 | 6 | 493 | 36 | 522 | 3.00e-89 | 295 |
| MS.gene022695.t1 | AT4G33650 | 37.052 | 502 | 287 | 7 | 6 | 493 | 36 | 522 | 3.04e-89 | 295 |
| MS.gene022695.t1 | AT1G10290 | 32.625 | 518 | 312 | 12 | 1 | 501 | 1 | 498 | 1.42e-67 | 238 |
| MS.gene022695.t1 | AT1G59610 | 32.563 | 519 | 311 | 14 | 1 | 501 | 1 | 498 | 5.04e-67 | 236 |
| MS.gene022695.t1 | AT1G60530 | 42.857 | 203 | 108 | 4 | 40 | 237 | 62 | 261 | 5.72e-37 | 140 |
| MS.gene022695.t1 | AT1G60500 | 34.528 | 307 | 188 | 7 | 40 | 344 | 65 | 360 | 4.81e-36 | 144 |
| MS.gene022695.t1 | AT1G53140 | 33.161 | 193 | 110 | 4 | 40 | 220 | 62 | 247 | 2.24e-19 | 93.2 |
Find 177 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGGAAGATTACCGATTT+TGG | 0.210097 | 8.4:-78549947 | MS.gene022695:intron |
| TGTTCAAGATATTGAAAATA+TGG | 0.234209 | 8.4:-78547519 | MS.gene022695:CDS |
| AACTATTCGGCTTGTGGATA+TGG | 0.268455 | 8.4:-78544696 | MS.gene022695:CDS |
| ATGAAATTGATTCGGTTTCT+TGG | 0.284411 | 8.4:-78543550 | MS.gene022695:CDS |
| CAGTTTCGTCTTGAATTTCC+TGG | 0.285024 | 8.4:+78549327 | None:intergenic |
| TGGCCACTTAGCCAGTAAAA+TGG | 0.287222 | 8.4:-78546152 | MS.gene022695:CDS |
| CCTAACTTTGATTGATTTGC+CGG | 0.293875 | 8.4:-78547692 | MS.gene022695:CDS |
| TTCAGGGAAATCTTCGGTTT+TGG | 0.304850 | 8.4:-78550754 | MS.gene022695:CDS |
| AACTATTTCTACACACAAAT+AGG | 0.315141 | 8.4:-78544386 | MS.gene022695:CDS |
| GACTACTACTTTACCAAAAT+CGG | 0.316139 | 8.4:+78549934 | None:intergenic |
| CTGATGCTATCAAAATTTCC+AGG | 0.329530 | 8.4:-78546561 | MS.gene022695:CDS |
| TGGAGATGAGAACAGAGTTC+AGG | 0.339919 | 8.4:-78550771 | MS.gene022695:intron |
| TCTGGATTACCCCGATTAGA+TGG | 0.350431 | 8.4:+78544590 | None:intergenic |
| GAATAAATGCTAAGATGAAT+TGG | 0.360365 | 8.4:+78549266 | None:intergenic |
| AACCTACTAATCCATCTAAT+CGG | 0.361526 | 8.4:-78544601 | MS.gene022695:CDS |
| AGCACTTGGAGTCGGTAATT+CGG | 0.363577 | 8.4:-78546027 | MS.gene022695:CDS |
| GCACTTGGAGTCGGTAATTC+GGG | 0.377924 | 8.4:-78546026 | MS.gene022695:CDS |
| AGTTGTAGCTGCAGCTAATT+CGG | 0.378066 | 8.4:+78544757 | None:intergenic |
| CGAGTTTAGTACAAGCTTGT+TGG | 0.379634 | 8.4:+78550951 | None:intergenic |
| CTTCTTCGTGATGACGACTA+TGG | 0.382344 | 8.4:-78551002 | None:intergenic |
| AGTCTCCGGTAACCTTGCTC+TGG | 0.390633 | 8.4:+78545093 | None:intergenic |
| TGAAATTGATTCGGTTTCTT+GGG | 0.392405 | 8.4:-78543549 | MS.gene022695:CDS |
| GATGGATTAGTAGGTTGATC+TGG | 0.393618 | 8.4:+78544572 | None:intergenic |
| GGGACTCTCAGTTACTTTAG+AGG | 0.394944 | 8.4:-78545063 | MS.gene022695:CDS |
| GACGAAACTGATAGAATTAC+GGG | 0.396420 | 8.4:-78549314 | MS.gene022695:CDS |
| ATAGCCAGTATGATACAATT+AGG | 0.396892 | 8.4:+78546613 | None:intergenic |
| AAATCGGTAATCTTCCTTCC+AGG | 0.398775 | 8.4:+78549950 | None:intergenic |
| TTTGAAACCAGTCCTGACTA+TGG | 0.400319 | 8.4:-78546172 | MS.gene022695:CDS |
| TGACAATAAACCACAGCCTT+TGG | 0.401522 | 8.4:+78544437 | None:intergenic |
| GCAGCCTAATTGTATCATAC+TGG | 0.404081 | 8.4:-78546617 | MS.gene022695:intron |
| CCATTTCTTGAGGAAGTCTT+CGG | 0.405046 | 8.4:+78544645 | None:intergenic |
| AAAGGCTGTGGTTTATTGTC+AGG | 0.408788 | 8.4:-78544435 | MS.gene022695:CDS |
| CCGAAGACTTCCTCAAGAAA+TGG | 0.408850 | 8.4:-78544645 | MS.gene022695:CDS |
| ATGCTAAGATGAATTGGAAT+AGG | 0.409960 | 8.4:+78549272 | None:intergenic |
| AGACGAAACTGATAGAATTA+CGG | 0.412288 | 8.4:-78549315 | MS.gene022695:CDS |
| TGTACTAAACTCGGTGACTA+TGG | 0.413767 | 8.4:-78550941 | MS.gene022695:CDS |
| CAAATTTGCGGCAAAGTTCA+AGG | 0.417106 | 8.4:+78545795 | None:intergenic |
| ACCTACTAATCCATCTAATC+GGG | 0.417903 | 8.4:-78544600 | MS.gene022695:CDS |
| GACGATAAGACCTCCCTTCA+AGG | 0.419033 | 8.4:+78546290 | None:intergenic |
| GCTGACAAAGCTGGATTTGA+TGG | 0.421276 | 8.4:-78546416 | MS.gene022695:CDS |
| TTGCCCCAGAGCAAGGTTAC+CGG | 0.423029 | 8.4:-78545098 | MS.gene022695:CDS |
| GTATTCAAAGAGCATTTAGA+TGG | 0.423316 | 8.4:-78545767 | MS.gene022695:CDS |
| ACGACTATGGAAAGCTTAAT+CGG | 0.423389 | 8.4:-78550989 | MS.gene022695:CDS |
| CTTAGCATTTATTCTCCAAA+TGG | 0.424920 | 8.4:-78549257 | MS.gene022695:intron |
| CTGCAGCTAATTCGGCTTGA+AGG | 0.425382 | 8.4:+78544765 | None:intergenic |
| CTTATCGTCTGCAACATCCT+TGG | 0.426910 | 8.4:-78546276 | MS.gene022695:CDS |
| TTTATGCCAGCACGGTTAGA+TGG | 0.427096 | 8.4:+78544554 | None:intergenic |
| TTATCGTCTGCAACATCCTT+GGG | 0.428575 | 8.4:-78546275 | MS.gene022695:CDS |
| ACCTGAGGGGTCCACTTCCC+TGG | 0.428644 | 8.4:+78546543 | None:intergenic |
| CCCCGATTAGATGGATTAGT+AGG | 0.432018 | 8.4:+78544599 | None:intergenic |
| TGAATACACGTTCAAATTTG+CGG | 0.432203 | 8.4:+78545783 | None:intergenic |
| CCGGCAAATCAATCAAAGTT+AGG | 0.433564 | 8.4:+78547692 | None:intergenic |
| GGAGATGAGAACAGAGTTCA+GGG | 0.433664 | 8.4:-78550770 | MS.gene022695:intron |
| TACTGCATCAACTGAAGCTT+CGG | 0.433786 | 8.4:+78545035 | None:intergenic |
| TGTCCAGGTGAGAGGACATT+TGG | 0.439687 | 8.4:-78546442 | MS.gene022695:intron |
| CGTCGCCGTCGTCGGTGGCC+AGG | 0.444062 | 8.4:-78550867 | MS.gene022695:intron |
| AGACCAATTGCTGTTGATGC+GGG | 0.446141 | 8.4:-78545929 | MS.gene022695:CDS |
| AGCAAGGGATGAAATTGATT+CGG | 0.449058 | 8.4:-78543558 | MS.gene022695:CDS |
| TTTATCAAAGATGTTATACT+AGG | 0.449754 | 8.4:+78545995 | None:intergenic |
| GTCTCCGGTAACCTTGCTCT+GGG | 0.449780 | 8.4:+78545094 | None:intergenic |
| GAAGACAACAATGTTTCAAA+AGG | 0.451865 | 8.4:-78543598 | MS.gene022695:CDS |
| GTTGCTATGTCCTGGTTGGC+TGG | 0.453996 | 8.4:+78546586 | None:intergenic |
| GCACGGTTAGATGGATTAGT+AGG | 0.466688 | 8.4:+78544563 | None:intergenic |
| ATTTGGCGTGCTGACAAAGC+TGG | 0.467319 | 8.4:-78546425 | MS.gene022695:CDS |
| ACAGGCGACCAGGAGGAGAT+AGG | 0.469255 | 8.4:-78545245 | MS.gene022695:intron |
| CTGGCTAAGTGGCCATAGTC+AGG | 0.469474 | 8.4:+78546160 | None:intergenic |
| AATCAGAGATGGATCATCTT+GGG | 0.469804 | 8.4:-78545952 | MS.gene022695:CDS |
| GACTTTCTACCTAGAGGATC+AGG | 0.470180 | 8.4:-78550714 | MS.gene022695:intron |
| GCATCAACTGAAGCTTCGGC+TGG | 0.470576 | 8.4:+78545039 | None:intergenic |
| GATGGATTAGTAGGTTGAGC+TGG | 0.471722 | 8.4:+78544608 | None:intergenic |
| GAATCAGAGATGGATCATCT+TGG | 0.476439 | 8.4:-78545953 | MS.gene022695:CDS |
| GAACTTGTGAGAAAATCAAT+AGG | 0.478284 | 8.4:-78544904 | MS.gene022695:CDS |
| CAACTTCATAAGATAGAAGA+AGG | 0.481307 | 8.4:-78550004 | MS.gene022695:CDS |
| GGCCACTTAGCCAGTAAAAT+GGG | 0.483415 | 8.4:-78546151 | MS.gene022695:CDS |
| ATACTCAACCTCCTTGCGCC+TGG | 0.484858 | 8.4:+78546195 | None:intergenic |
| TGTCTTCTCTCCATCACGGT+AGG | 0.486322 | 8.4:+78543614 | None:intergenic |
| TACGTAAAGCAGCAGGAAGC+TGG | 0.489120 | 8.4:+78545202 | None:intergenic |
| TTATGCAGCGTTGGTACGCC+AGG | 0.489375 | 8.4:-78549345 | MS.gene022695:intron |
| ACAGAGTTCAGGGAAATCTT+CGG | 0.489500 | 8.4:-78550760 | MS.gene022695:intron |
| CTTCCTTCCGTCGCCGTCGT+CGG | 0.492244 | 8.4:-78550875 | MS.gene022695:CDS |
| AGAGAAAGATGTTTGTCAAT+CGG | 0.497168 | 8.4:+78545174 | None:intergenic |
| AGAGTAAGAAGACAACTATT+CGG | 0.503106 | 8.4:-78544709 | MS.gene022695:CDS |
| CACTTAATTGCCCCAGAGCA+AGG | 0.512092 | 8.4:-78545105 | MS.gene022695:CDS |
| GGCTATATCTCCAGCCAACC+AGG | 0.515519 | 8.4:-78546596 | MS.gene022695:CDS |
| CTGGGGCAATTAAGTGAGGC+TGG | 0.517726 | 8.4:+78545112 | None:intergenic |
| TATGGAAAGCTTAATCGGCT+TGG | 0.517895 | 8.4:-78550984 | MS.gene022695:CDS |
| GTTTATTGTCACAGGCGACC+AGG | 0.522732 | 8.4:-78545255 | MS.gene022695:intron |
| TGCAGCTAATTCGGCTTGAA+GGG | 0.525361 | 8.4:+78544766 | None:intergenic |
| GATTGTGACGAGGCGTCCAT+TGG | 0.525514 | 8.4:-78550032 | MS.gene022695:CDS |
| AATGACGATCGTTACGGTGA+GGG | 0.526248 | 8.4:-78544533 | MS.gene022695:CDS |
| GCTAATTCGGCTTGAAGGGT+AGG | 0.528310 | 8.4:+78544770 | None:intergenic |
| CATCAACTGAAGCTTCGGCT+GGG | 0.528711 | 8.4:+78545040 | None:intergenic |
| GCCGAGTTTCTTCATAGACC+TGG | 0.530204 | 8.4:-78549968 | MS.gene022695:CDS |
| GGCATAAATGACGATCGTTA+CGG | 0.532941 | 8.4:-78544539 | MS.gene022695:CDS |
| TCCAGGGAAGTGGACCCCTC+AGG | 0.537660 | 8.4:-78546544 | MS.gene022695:intron |
| GAATGGTGTCGGACACACTC+AGG | 0.542112 | 8.4:-78544469 | MS.gene022695:CDS |
| CATCAGAAGTTGCTATGTCC+TGG | 0.543250 | 8.4:+78546578 | None:intergenic |
| GTCTTCTCTCCATCACGGTA+GGG | 0.543606 | 8.4:+78543615 | None:intergenic |
| GAAGACAACTATTCGGCTTG+TGG | 0.544489 | 8.4:-78544702 | MS.gene022695:CDS |
| TGTGAAGAGAGTGGTGTCAG+AGG | 0.544625 | 8.4:-78545145 | MS.gene022695:CDS |
| GAGACCAATTGCTGTTGATG+CGG | 0.545777 | 8.4:-78545930 | MS.gene022695:CDS |
| GAAAGAGAACCTGATCCTCT+AGG | 0.546071 | 8.4:+78550705 | None:intergenic |
| CGAAGAACTTGAATCAGAGA+TGG | 0.546993 | 8.4:-78545963 | MS.gene022695:CDS |
| GACCAATTGCTGTTGATGCG+GGG | 0.549430 | 8.4:-78545928 | MS.gene022695:CDS |
| CCACCGACGACGGCGACGGA+AGG | 0.550441 | 8.4:+78550872 | None:intergenic |
| ATGACGATCGTTACGGTGAG+GGG | 0.551047 | 8.4:-78544532 | MS.gene022695:CDS |
| TTATATATCCTATCTCCTCC+TGG | 0.551940 | 8.4:+78545237 | None:intergenic |
| CCTTGCAAAACTGCTCTCAC+AGG | 0.554182 | 8.4:-78546119 | MS.gene022695:intron |
| CCAGCTTTCTCCATTTCTTG+AGG | 0.555810 | 8.4:+78544635 | None:intergenic |
| CACACAAATAGGAAAGAAAG+AGG | 0.557997 | 8.4:-78544375 | MS.gene022695:intron |
| CAACAAGCTTGTACTAAACT+CGG | 0.559054 | 8.4:-78550950 | MS.gene022695:CDS |
| CTAATTCGGCTTGAAGGGTA+GGG | 0.560321 | 8.4:+78544771 | None:intergenic |
| CTAACTTTGATTGATTTGCC+GGG | 0.561184 | 8.4:-78547691 | MS.gene022695:CDS |
| TTCAAAGAGCATTTAGATGG+AGG | 0.561465 | 8.4:-78545764 | MS.gene022695:CDS |
| TATCAAAATTTCCAGGGAAG+TGG | 0.563515 | 8.4:-78546554 | MS.gene022695:CDS |
| GGTCACTATTCCAAAGGCTG+TGG | 0.564280 | 8.4:-78544447 | MS.gene022695:CDS |
| CCTTCCGTCGCCGTCGTCGG+TGG | 0.564731 | 8.4:-78550872 | MS.gene022695:CDS |
| TCAAATGTGTCATCCTACAT+AGG | 0.567396 | 8.4:-78544491 | MS.gene022695:CDS |
| GAGTCCCTTCAATCAGTCTC+CGG | 0.567399 | 8.4:+78545079 | None:intergenic |
| TCAAAGAGCATTTAGATGGA+GGG | 0.572110 | 8.4:-78545763 | MS.gene022695:intron |
| TGATGCTATCAAAATTTCCA+GGG | 0.575484 | 8.4:-78546560 | MS.gene022695:CDS |
| GGAAGCTTACGTAAAGCAGC+AGG | 0.575667 | 8.4:+78545195 | None:intergenic |
| CCTCAAGAAATGGAGAAAGC+TGG | 0.577336 | 8.4:-78544635 | MS.gene022695:CDS |
| ATCCTACATAGGAATGGTGT+CGG | 0.589525 | 8.4:-78544480 | MS.gene022695:CDS |
| GGACAAAGGAACTAATGCAT+TGG | 0.589827 | 8.4:-78546395 | MS.gene022695:CDS |
| AGAAGTTGCTATGTCCTGGT+TGG | 0.591320 | 8.4:+78546582 | None:intergenic |
| CTGGCCACCGACGACGGCGA+CGG | 0.594779 | 8.4:+78550868 | None:intergenic |
| TTTGCGGCAAAGTTCAAGGA+TGG | 0.594840 | 8.4:+78545799 | None:intergenic |
| ACTAATCCATCTAACCGTGC+TGG | 0.596233 | 8.4:-78544560 | MS.gene022695:CDS |
| AATGGTGTCGGACACACTCA+GGG | 0.601246 | 8.4:-78544468 | MS.gene022695:CDS |
| TTATGAAGTTGTAACACCAA+TGG | 0.601894 | 8.4:+78550016 | None:intergenic |
| TAAGTGGCCATAGTCAGGAC+TGG | 0.601929 | 8.4:+78546165 | None:intergenic |
| ATGTTAACTGTCCAGGTGAG+AGG | 0.603386 | 8.4:-78546450 | MS.gene022695:intron |
| TATTCGGCTTGTGGATATGG+AGG | 0.603654 | 8.4:-78544693 | MS.gene022695:CDS |
| ATTAGCTGCAGCTACAACTG+AGG | 0.604264 | 8.4:-78544753 | MS.gene022695:CDS |
| TCCAGGTCTATGAAGAAACT+CGG | 0.604969 | 8.4:+78549967 | None:intergenic |
| TGTGTCATCCTACATAGGAA+TGG | 0.605269 | 8.4:-78544486 | MS.gene022695:CDS |
| CGTCTGCAACATCCTTGGGT+CGG | 0.605481 | 8.4:-78546271 | MS.gene022695:CDS |
| GGTTACCGGAGACTGATTGA+AGG | 0.605725 | 8.4:-78545084 | MS.gene022695:CDS |
| GTCCGACACCATTCCTATGT+AGG | 0.606800 | 8.4:+78544478 | None:intergenic |
| TTGAACTATATAAAGCAGCA+AGG | 0.610358 | 8.4:-78543574 | MS.gene022695:CDS |
| ATACTGATATGATTGTTGCC+AGG | 0.611071 | 8.4:-78546213 | MS.gene022695:CDS |
| TATGATTGTTGCCAGGCGCA+AGG | 0.611351 | 8.4:-78546206 | MS.gene022695:CDS |
| GTTACCGGAGACTGATTGAA+GGG | 0.613786 | 8.4:-78545083 | MS.gene022695:CDS |
| ACTTCATAAGATAGAAGAAG+GGG | 0.619742 | 8.4:-78550002 | MS.gene022695:CDS |
| TCTTCAGAATGTGAAGAGAG+TGG | 0.620832 | 8.4:-78545154 | MS.gene022695:CDS |
| CAGTACCTGGCCACCGACGA+CGG | 0.621667 | 8.4:+78550862 | None:intergenic |
| AGACGAAGACCCTACCGTGA+TGG | 0.621898 | 8.4:-78543624 | MS.gene022695:CDS |
| ACCAATTGCTGTTGATGCGG+GGG | 0.622770 | 8.4:-78545927 | MS.gene022695:intron |
| TGCTCTGGGGCAATTAAGTG+AGG | 0.623821 | 8.4:+78545108 | None:intergenic |
| TGAACTATATAAAGCAGCAA+GGG | 0.626349 | 8.4:-78543573 | MS.gene022695:CDS |
| AAGCTGGATTTGATGGACAA+AGG | 0.627483 | 8.4:-78546409 | MS.gene022695:CDS |
| GGGTTGACTAAAGTTGCTGT+AGG | 0.631196 | 8.4:-78547670 | MS.gene022695:intron |
| TAACTTTGATTGATTTGCCG+GGG | 0.635039 | 8.4:-78547690 | MS.gene022695:CDS |
| AGAGTGGTGTCAGAGGCAGA+TGG | 0.635211 | 8.4:-78545138 | MS.gene022695:CDS |
| AACTTCATAAGATAGAAGAA+GGG | 0.635239 | 8.4:-78550003 | MS.gene022695:CDS |
| CGATTTACTACACCGACCCA+AGG | 0.635734 | 8.4:+78546259 | None:intergenic |
| AGTTTCTTCATAGACCTGGA+AGG | 0.637640 | 8.4:-78549964 | MS.gene022695:CDS |
| AAATTGCAGGGATTGTGACG+AGG | 0.638817 | 8.4:-78550042 | MS.gene022695:intron |
| GCAGGCTAAACAACTATCAG+AGG | 0.640315 | 8.4:-78543651 | MS.gene022695:intron |
| AAAATCAATAGGTGAAACTG+AGG | 0.644678 | 8.4:-78544893 | MS.gene022695:intron |
| GGAGGCTTCGTATCTTACTG+TGG | 0.644824 | 8.4:-78544675 | MS.gene022695:CDS |
| TGGAGTCGGTAATTCGGGCA+CGG | 0.645097 | 8.4:-78546021 | MS.gene022695:CDS |
| ACTCAGGGTCACTATTCCAA+AGG | 0.654601 | 8.4:-78544453 | MS.gene022695:CDS |
| TTGTTGTCTTCTCTCCATCA+CGG | 0.655926 | 8.4:+78543610 | None:intergenic |
| GGACGTGACTTTCTACCTAG+AGG | 0.659844 | 8.4:-78550720 | MS.gene022695:CDS |
| CTACAACTGAGGCTCTAGAG+AGG | 0.662304 | 8.4:-78544742 | MS.gene022695:CDS |
| AAATGACGATCGTTACGGTG+AGG | 0.670553 | 8.4:-78544534 | MS.gene022695:CDS |
| CCTACTAATCCATCTAATCG+GGG | 0.671752 | 8.4:-78544599 | MS.gene022695:CDS |
| GATCGTCATTTATGCCAGCA+CGG | 0.674076 | 8.4:+78544546 | None:intergenic |
| GATTGTTGCCAGGCGCAAGG+AGG | 0.689806 | 8.4:-78546203 | MS.gene022695:CDS |
| ACAGCAACTTTAGTCAACCC+CGG | 0.696272 | 8.4:+78547673 | None:intergenic |
| TATTGTCACAGGCGACCAGG+AGG | 0.697345 | 8.4:-78545252 | MS.gene022695:intron |
| ACTAAACTCGGTGACTATGG+CGG | 0.703039 | 8.4:-78550938 | MS.gene022695:CDS |
| TTGTCTTCTTACTCTCATCG+CGG | 0.704669 | 8.4:+78544717 | None:intergenic |
| TCTCCGGTAACCTTGCTCTG+GGG | 0.721661 | 8.4:+78545095 | None:intergenic |
| GGTACATTAACATACCTGAG+GGG | 0.808362 | 8.4:+78546530 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 78543541 | 78551014 | 78543541 | ID=MS.gene022695 |
| chr8.4 | mRNA | 78543541 | 78551014 | 78543541 | ID=MS.gene022695.t1;Parent=MS.gene022695 |
| chr8.4 | exon | 78550868 | 78551014 | 78550868 | ID=MS.gene022695.t1.exon1;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78550868 | 78551014 | 78550868 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78550715 | 78550778 | 78550715 | ID=MS.gene022695.t1.exon2;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78550715 | 78550778 | 78550715 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78549948 | 78550055 | 78549948 | ID=MS.gene022695.t1.exon3;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78549948 | 78550055 | 78549948 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78549258 | 78549359 | 78549258 | ID=MS.gene022695.t1.exon4;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78549258 | 78549359 | 78549258 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78547671 | 78547721 | 78547671 | ID=MS.gene022695.t1.exon5;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78547671 | 78547721 | 78547671 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78547499 | 78547560 | 78547499 | ID=MS.gene022695.t1.exon6;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78547499 | 78547560 | 78547499 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78546545 | 78546635 | 78546545 | ID=MS.gene022695.t1.exon7;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78546545 | 78546635 | 78546545 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78546393 | 78546457 | 78546393 | ID=MS.gene022695.t1.exon8;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78546393 | 78546457 | 78546393 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78546120 | 78546314 | 78546120 | ID=MS.gene022695.t1.exon9;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78546120 | 78546314 | 78546120 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78545928 | 78546047 | 78545928 | ID=MS.gene022695.t1.exon10;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78545928 | 78546047 | 78545928 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78545764 | 78545834 | 78545764 | ID=MS.gene022695.t1.exon11;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78545764 | 78545834 | 78545764 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78545038 | 78545263 | 78545038 | ID=MS.gene022695.t1.exon12;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78545038 | 78545263 | 78545038 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78544894 | 78544944 | 78544894 | ID=MS.gene022695.t1.exon13;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78544894 | 78544944 | 78544894 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78544376 | 78544807 | 78544376 | ID=MS.gene022695.t1.exon14;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78544376 | 78544807 | 78544376 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| chr8.4 | exon | 78543541 | 78543669 | 78543541 | ID=MS.gene022695.t1.exon15;Parent=MS.gene022695.t1 |
| chr8.4 | CDS | 78543541 | 78543669 | 78543541 | ID=cds.MS.gene022695.t1;Parent=MS.gene022695.t1 |
| Gene Sequence |
| Protein sequence |
