AlfalfaGEDB | MS.gene22766

M. sativa cultivar XinJiangDaYe / MS.gene22766

KEGG: K14790
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00806.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22766.t1	XP_013450636.1	95.2	688	32	1	43	729	56	743	0.00E+00	1236.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22766.t1	Q9C552	55.8	631	264	6	43	668	85	705	5.0e-195	682.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22766.t1	A0A072U4J4	95.2	688	32	1	43	729	56	743	0.0e+00	1236.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049824	MS.gene22766	0.805679	1.19E-49	-1.69E-46
MS.gene050427	MS.gene22766	0.803931	2.75E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011390	MS.gene22766	PPI
MS.gene033348	MS.gene22766	PPI
MS.gene033349	MS.gene22766	PPI
MS.gene065463	MS.gene22766	PPI
MS.gene22766	MS.gene065462	PPI
MS.gene22766	MS.gene057157	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22766.t1	MTR_7g117545	96.849	730	19	2	1	729	17	743	0.0	1456

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene22766.t1	AT1G72320	52.993	685	292	8	42	714	84	750	723
MS.gene22766.t1	AT1G72320	52.993	685	292	8	42	714	84	750	723
MS.gene22766.t1	AT1G72320	52.993	685	292	8	42	714	62	728	723
MS.gene22766.t1	AT1G72320	52.993	685	292	8	42	714	62	728	723

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Find 156 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGATGACTCGAGT+AGG	0.604028	7.3:+192990	MS.gene22766:CDS
AAAAGCACCTGACGAGTGGA+GGG	0.611457	7.3:-192358	None:intergenic
AAAGAAATTGACCAATCCCT+TGG	0.513854	7.3:+192881	MS.gene22766:CDS
AAAGAAGAGTCCGAAGCACA+TGG	0.554626	7.3:-187198	None:intergenic
AACAAAGTTCCCATGTTGAT+GGG	0.529275	7.3:-188301	None:intergenic
AAGAAATCGTGATGCATCTG+AGG	0.598473	7.3:+193099	MS.gene22766:CDS
AAGAACATGAGCTGTGTCCA+TGG	0.571968	7.3:-191550	None:intergenic
AAGAAGAGTCCGAAGCACAT+GGG	0.670101	7.3:-187197	None:intergenic
AAGAAGGAAAAGGTTGAAAG+TGG	0.491975	7.3:+193028	MS.gene22766:CDS
AAGAATAAGAACAATGCTGA+GGG	0.581072	7.3:+187613	MS.gene22766:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGTTAGATGCATACG+TGG	-	chr7.3:189827-189846	None:intergenic	30.0%
AAGAATAAGAACAATGCTGA+GGG	+	chr7.3:187613-187632	MS.gene22766:CDS	30.0%
AAGAGTAAGAAACCTAAGAA+GGG	+	chr7.3:186671-186690	MS.gene22766:CDS	30.0%
AAGATAAATCCAATTGGATC+TGG	+	chr7.3:189025-189044	MS.gene22766:CDS	30.0%
AAGTCCACAGCTAAAATATT+TGG	-	chr7.3:192139-192158	None:intergenic	30.0%
AAGTTAGGAAGTAACTGAAT+AGG	-	chr7.3:191140-191159	None:intergenic	30.0%
AATGCACTTGAAGAAACAAA+GGG	+	chr7.3:186881-186900	MS.gene22766:CDS	30.0%
AATTCATTGAACAAGGCTAT+GGG	-	chr7.3:188240-188259	None:intergenic	30.0%
AATTGCTTACACCATTAAAC+CGG	-	chr7.3:189104-189123	None:intergenic	30.0%
ACACATAACATCAAGAGAAT+TGG	-	chr7.3:187164-187183	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	186653	193156	186653	ID=MS.gene22766
chr7.3	mRNA	186653	193156	186653	ID=MS.gene22766.t1;Parent=MS.gene22766
chr7.3	exon	186653	187444	186653	ID=MS.gene22766.t1.exon1;Parent=MS.gene22766.t1
chr7.3	CDS	186653	187444	186653	ID=cds.MS.gene22766.t1;Parent=MS.gene22766.t1
chr7.3	exon	187544	187711	187544	ID=MS.gene22766.t1.exon2;Parent=MS.gene22766.t1
chr7.3	CDS	187544	187711	187544	ID=cds.MS.gene22766.t1;Parent=MS.gene22766.t1
chr7.3	exon	188219	188362	188219	ID=MS.gene22766.t1.exon3;Parent=MS.gene22766.t1
chr7.3	CDS	188219	188362	188219	ID=cds.MS.gene22766.t1;Parent=MS.gene22766.t1
chr7.3	exon	188612	188731	188612	ID=MS.gene22766.t1.exon4;Parent=MS.gene22766.t1
chr7.3	CDS	188612	188731	188612	ID=cds.MS.gene22766.t1;Parent=MS.gene22766.t1
chr7.3	exon	188928	189113	188928	ID=MS.gene22766.t1.exon5;Parent=MS.gene22766.t1
chr7.3	CDS	188928	189113	188928	ID=cds.MS.gene22766.t1;Parent=MS.gene22766.t1
chr7.3	exon	191516	191664	191516	ID=MS.gene22766.t1.exon6;Parent=MS.gene22766.t1
chr7.3	CDS	191516	191664	191516	ID=cds.MS.gene22766.t1;Parent=MS.gene22766.t1
chr7.3	exon	192332	192514	192332	ID=MS.gene22766.t1.exon7;Parent=MS.gene22766.t1
chr7.3	CDS	192332	192514	192332	ID=cds.MS.gene22766.t1;Parent=MS.gene22766.t1
chr7.3	exon	192709	193156	192709	ID=MS.gene22766.t1.exon8;Parent=MS.gene22766.t1
chr7.3	CDS	192709	193156	192709	ID=cds.MS.gene22766.t1;Parent=MS.gene22766.t1

Gene Sequence

>MS.gene22766

ATGGGTCGAGAAGGCAAGAAGAGTAAGAAACCTAAGAAGGGTTCTTCTACTCATGAATATGATACGCCCACTGCCTTTGACAACAACAACAACAACAGTTATTCTTCTTCTTCTTCTTCGCGTATTAGGAAACAGGTTGACCCTGAAACTACTAAATATTTGTCTCAAATCGCTAATCTTTTTGAATCCGACGGCGTTGCTTTGGAGGAACGATCACTCATATGCGCCAATGCACTTGAAGAAACAAAGGGTAAAGAATTTGAAATTGCAACTGATTATATTCTCAGCCACACATTGGAAACCATCCTTCAGGGTTGTGATGTCGATAATCTCTGTGCTTTCCTTCATAGCAGTGCCAATCAATTCCCCTTCATTGCTATGGATAGATCAGGTTCTCATGTTGCCCAGACTGCCATCAATTCTCTCGCTTCTCATCTTCAATACGACGACCAACATACCCACTCTCTCGTTGAGGAAGCTCTAACCCTTATTTGCAATGTCATTGCCGCCAATTCTCTTGATGTTATGTGTAATTGCTACGGCTCCCATGTGCTTCGGACTCTTCTTTGCCTCTGTAAAGGAGTACCCTTAGATAAGTCTGGATTCTATCTCTCTAAATCCACTACCGCTCTTGCTGAACGTTTGAATTTTAAACAATTCTCTTCAAACAAGGATGCTTTTCACTCTGGATTCCCAATTTTATTGAATTCACTTGTTTCTCAGATGTTCAATCATGCTACAAAATACATCAAGTCCCTACAACTTGACCAATTTAGTAGTTTGGTTTTTCAGGTATGGTATTCTATTCATGTTGTAGATCATATCATACTGTTGAGACAAAATATTTCAAACTTCATTCTAACTTTATTTACCTTCAATAATGAATGGCAGACAACTCTAAGGGTGCTGGCAGGCAATGATGAACTGTTATTAGATGTCATTCCTATCCTTCTTGGCTGCAAGAATAAGAACAATGCTGAGGGGAATCTTATAGAGACTGCAGTAGTGCCGGAGCTCAAGAATTTGTTCAAAGAACCTGGCTTTAGCCATCTAATGGAGGTATAAACAACCTAAAGGAGGGAACCTGTTTATAATTACTTATACTAGTGCAAGAACTTCCTTATAATACGAACAGAAGTTTAATAGAGACTATATATAATTTGTTTATTCTTACTTGTTTTTACTTAAAAAATAATAATATTTTCATGTTCCTTTCAAAACTGTCTATTGTGTGTATTTTTCCTATAGTTTTTCAATGTATACTATTATACATTTTCAAACTAACCCTTCCACAGATTTAATCTGAAAAACAACTTACAAGTAACTATGTCAAGTTATGTATTATGGATAAGACTAGTTAGTCCCAAAATTATTTTTCATGGTTGACAATGGTCTGACCATTAGATATATCATTCTTGTAAATTGTTCTGTGATTCATCATACAACCTTCATGTGATGCCTATTTTCACAGGTCATTATATACCTGCATTTTTGTTACGGTGGCATCAATAACGTTCTGTTTCTAAATAGACATTGTGGTAATCAATTTTTCTAAATGTTTTACAGGTTGTTTTGGAAGTGTCTCCCATAGCCTTGTTCAATGAATTGTTCACAAAAGTATTCAGAAATTCCTTGTTTGAGTTATCGTCCCATCAACATGGGAACTTTGTTGTTCAAGCATTGATTTCCCATGCAAGCGATCAAGATGTGGTATTATGCGTAGTTCTTTTTCGTTTTAAAGTATTGACAATTGCTTTACTTTTTTAATCTTAGAAATTTAATGCTGGCCATCGATTAATTTTGTCCAGTATAGGATTGGTTGGATTATTTTGCTTGCATTGCATTTTTCTATTTTCTATTGCTTATTCTTTTAATGACATCTATTTGTATTTGTATTATAACTTCTCTTTGCAAAATGTTATCCCTATTTCTGTTTTAACTTTTTCAACGCTTTGGTAGATGGAGCTGATCTGGGATGAGCTTGGGCCAAATATGGAGGGTCTTTTCCAAATGGGAAGGTCGGGAGTGGTTGCTTCACTTATTGCTGCATGTGAAAGGCTTCATATTAATGAACATAAGGTTTGCAATTTAGTTATCGTATCTAGGATTAGTGGATTCCTATATACTTGCTGTTACTTTTATTAGCAATCATATCTAGGATTAGTGGATTCCTATAAACTTGCTGTTACTTTTGTTATGTACTGAAATTATTTTACTTTATTTTGTTCCACATCTTTATGAAAAGTTTAATTGCATTTCTGTTCCTTTGTGGCAGTGTTGTCAAGTCCTTGCTAAAACAGTGTGTTTAGCAGACGAGTCTTCAAAATGGATTGTTCCACGACTACTATTTCTTGATAGCTATTTCAATTGCGAAGATAAATCCAATTGGATCTGGCAAAGTGGAGCAAAAATGAACGTCATGGGGTCTCTGATCCTGCAGTCAATATTCCGGTTTAATGGTGTAAGCAATTTTCTTGAACTTGCATTTTTTCTTTCTTTTCGGTTTTAATTGGTAGGAGGGAGCATGCAGATATGTCAATCATCTCAAGGTATAGCACAGGAACAGGCAGATTCCCAACATGGAAATGTTATGTAAAACTATTTTTTTTTTGGGGTGAGGGCATCCTTATTATGCAGAATAGGTCTCCAATGGTTGGTTAAGCCTTTTCTTAGAGACCTTTCATGAGGTCCTGAAATGGATGCTTCAAAGAAGATGAAGCACTTCTAAGACTATCTATAAGACTTCCATCACCAATTACAACCTTGAAATATTGATTAATTAGTCCTGCCCACTGTCTATAAGACTTCCATCACCAATTACAACCTAGAAATATTGATTAATAAGTCCTCCCCACTGAACTGTAGGAAAATAACTATTTACATTGAACATGAACAGGGTATAGGGTAAACTAAAATACTAAATATAGGAGAAATATGTTTGCATTTTCGATTTTGTTGGAGTCTTTTGCTGTCACTTCACTTGGCGCATTGTTTTATAGGTTAGATTGTAGCTTTGAAGTTAGACTCACGGTTGTCAAACTCTCAAGTTAACTTCGAACTGTATGAGTTTACAACTCTAGGTGCCAAAATCGAGTTAACTTGCTTGCAAAATCATTTATGTTAAACTGGGTAGTATACAAAACATTCACTTCACAGTTGCAGTGCTCTATTCCACGTATGCATCTAACATTTTTACATTGCAAAGGAGGTGAGCAAAACATTATCGAGTCTCAACCCCAAAACTCCAAACGTTTTAAGAGACTTGAGTTTACGTAGACTCTTGGAGTTTGACAACCTTAGTTAAACATCTTTGACTGTCATTTAGGGTCTGTTTGGTAGAAGAGAATTTGGAAAGAGAGAAATAGGAGAGAGAAAGAGAGGAGAAATAGCAATGTTACCGTGTTTGGTATAGCATAGAAACAGGGGAGAGAGATAAAAAATGGTAGGGCCCACTTACTTTTTGTTTCTCCTCTGGCCTGCGAAGAAAGTGGAAGCATACCACACTTTTTCTCAAACTTCCAGTTTTACCCTCTTTTATATTGAGTCCTCACACTTTTTATTTTTTTAGGTGTTTTTCATCTTAATATTACAAAGTATTTTGCGTATAAAAACAAATGGGTCAGCAAATATTTTTTTTTTTTTACGAGGCTAATTGCAGATAAAAATAATTGATTTTGTTGACGAGGACATGTGATGTTAGCTTTTTTATTTATGTAATTAAATAATTGAATCAAGATAAAAATCAATTATAATGTATTTTTTTTAATTTAAGGGTATTCTTGTACTTTCAAAAGATTAATACACTTCTCTCTCCCCTATTTCTCTTCTTATTCTCTTGTATCAAACAATACCTCAAATCTATTCTATTTCTCACCTCTTTCTCTCTTTCCATACTCTCTCTCACCTATTTCTCTCTTCACAATTTCCCTTTCAAACCAAACATAGTGTTAATATGAAAATGTGAGGAGCTTCAAGTGGTGTTGTAGCCTTTTAAAATTTAGGAAGCTTAATGTTTGGGGTTAGGGCAAGGGGTCTTCCAATTTAGTGATGATTTGTTATTTGCATGTTTTTTGGGTAAGATAGTGATGCACATTCATATATCTGGCAGCGTGGTGAATTTTTTTATATTATTATGAATTATGATTTGCTGGGTTGTCAGTAGTGGCGGCGGATAGTGTCACAATTTTAGACCAATAATTAAATAGAACAATAATAATAGTAATATAATGATAGGACTAGGACCAGTAAGAAATCTTCAGGGAATAAACCATTTCAGTACACAAGGGAGTTCACTTCCAAGTTATCAAATAATTTGAGGAATTAGAGGCCTCCAAAATAATTTCTTATTATGCAAAAGTGACTAAACTAACTAATTCACCCTATATTAATAAGCTCAGCCTAACACCTACCTCAAACAACTAACTACTGGCAGTTACAATTTTACTAAGCAGTTGTATAATTCTGTTAATAACTTCCTCTCTACTCCTATTCAGTTACTTCCTAACTTAAACTTGTCTAATAGAAGGTTTCCCATTTCTATCTTATAAACTAATATAAACTTGTCTAATAATTACTTGTATATATTTGTATAAAATTATTTAGATGCATAGTGTGTGTGTGTGTGTGTGTGTGTGTAGACAAACTAGATGACATGTTATGCTTATTGTGGAAATCAATGTAAACGCTATGCCATATATTGCTAATCCTGGTTATATTATATTCAAACAAGTGGTGCTTTTAAGTCTATCTTTTTATGCAAGGTAGAATGCCTAAAACAGTTTCCAGTTTCCCATTTATTATTTGATTTCATTTGTGTTACAAAATGGTATTCATGTGTCGTATTCCTTCATTTTATTTTTGCAGGAATATATAAAACCTTTTATCACCAGTATAACATCCATGGACACAGCTCATGTTCTTGAGGCGGTGAAAAATGCTAGAGGATCACATGTTATTGAGGCTTTTCTGTGTTCAGGTGCTCCTGGGAAACAGAAGCGCAGATTGGTTGCAAAGTATGTTTTTCAACTCTATTTCTTGTACCCCCTCCGGTCCTATTTACAAGAGAAAGTTAACTTTTTAGATACATTGAATAATGTATGTATCTAGTCAAGAACCTAAACCAAATACATAAATTATTACGATACAACTAAAAAGTAAGTTGTTTCTTGTAAATAGGACCGGAGGGAGTATTTTTTTTTTTGTTTGTGAAATTCTTATTTATGCTAAGCTAAAGGAATAAATGGAACTAATAGCCGATGTTTTATTACTTTATAACTACTTTATAGGATTCATATTCAAGTTTAGTATCACAGATACATGCACATTAGATGAGAATAATTATTTGGCTGAAATTTAATATATTTTATTTGAAGTTACAGTTTAACCCTTGTGATTTGGGATTCTTCAGATATTATTACTTGAGTTTTGAAAAAGGAAATGGTTAGCTATTGAAATTGTTTACAAATTTGAGAGGACGGTAAATTCCAAATATTTTAGCTGTGGACTTAGTTGCCAAAACCTTAGTATTGGAGGCTGTATTTATTTTTTCACATAGTTGTTAGCTAACTTTTTCTAAACTTCAGCAAGGTGAAAATATCAAAAAATTTGTTGTGATTTAATAGATTTCAAGAGTATTGAGTGTCTCTATCTTTTCCCTGTCTTTTGTAACTTGTTTTGTAGACTACAGGGCCATTTTGGAGAGGTTGCCCTCCACTCGTCAGGTGCTTTTACCATTGAAAAGTGCTTCACAGCCTGTAACCTATCACTAAGAGAGACTATAGTGTCTGAACTATTGGCTGTGCAAAGTGAGCTTTCGAAGACAAAGCAGGGCTCTTACCTATTGAGGAAATTAGATGTTGATGGGTATGCTGTTGTATATTTGCTGTGTTATGGAATTTCCATATCTATATACAGGGAATTAGAAATAGAAAGCATACCATATACAGGGCTCAAGCTTTTTTCTGTTCATATCTTAAAGCTTAGGATAGAAATATTGTGTTTCCTTTGTGTTAATCAAGCTAATCTGCAATACTTATGCCTTTGATTTATTGCAACAGATTTGCTGCAAGTCCAGATCATTGGAGGTCAAAGCAAGCATCCAAAGAATCTACTTATAAAGAATTTTACGCTACGTTTGGCTCCAGCGATACAAGGTCAACCAAAAATGATGGCTTCCTTGCTGATACCTCAAATAATAAATCTAGTTCAAATAATGTGAAGGAAATGAGAAAAGAAATTGACCAATCCCTTGGTTCTTCATCATTTCTGAGCACGGATGGCTTCAACAGAAACCCAAAAAAAGCAAAGCAGAAAGACAAGAAAAACACTGAGATTGGTGAAAACGAAGATGACTCGAGTAGGAAAAAGAAAAGATCTAAGAAGGAAAAGGTTGAAAGTGGATATGATATTGCTACTACTGAGGCAGCCAAGACTGCAAAGAAACGACAAAGAAATCGTGATGCATCTGAGGCTTCTGGGAAGAAATTAAAGACATCAGACGAGTAG

Protein sequence

>MS.gene22766.t1

MGREGKKSKKPKKGSSTHEYDTPTAFDNNNNNSYSSSSSSRIRKQVDPETTKYLSQIANLFESDGVALEERSLICANALEETKGKEFEIATDYILSHTLETILQGCDVDNLCAFLHSSANQFPFIAMDRSGSHVAQTAINSLASHLQYDDQHTHSLVEEALTLICNVIAANSLDVMCNCYGSHVLRTLLCLCKGVPLDKSGFYLSKSTTALAERLNFKQFSSNKDAFHSGFPILLNSLVSQMFNHATKYIKSLQLDQFSSLVFQTTLRVLAGNDELLLDVIPILLGCKNKNNAEGNLIETAVVPELKNLFKEPGFSHLMEVVLEVSPIALFNELFTKVFRNSLFELSSHQHGNFVVQALISHASDQDVMELIWDELGPNMEGLFQMGRSGVVASLIAACERLHINEHKCCQVLAKTVCLADESSKWIVPRLLFLDSYFNCEDKSNWIWQSGAKMNVMGSLILQSIFRFNGEYIKPFITSITSMDTAHVLEAVKNARGSHVIEAFLCSGAPGKQKRRLVAKLQGHFGEVALHSSGAFTIEKCFTACNLSLRETIVSELLAVQSELSKTKQGSYLLRKLDVDGFAASPDHWRSKQASKESTYKEFYATFGSSDTRSTKNDGFLADTSNNKSSSNNVKEMRKEIDQSLGSSSFLSTDGFNRNPKKAKQKDKKNTEIGENEDDSSRKKKRSKKEKVESGYDIATTEAAKTAKKRQRNRDASEASGKKLKTSDE