Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065462.t1 | XP_003608861.1 | 99.3 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 1.80E-239 | 838.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065462.t1 | O00567 | 59.4 | 431 | 171 | 1 | 3 | 433 | 4 | 430 | 1.6e-140 | 500.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065462.t1 | B7FLU4 | 99.3 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 1.3e-239 | 838.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065462.t1 | MTR_4g103790 | 99.306 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 0.0 | 890 |
| MS.gene065462.t1 | MTR_4g070910 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 2.03e-103 | 318 |
| MS.gene065462.t1 | MTR_5g010260 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 2.31e-102 | 317 |
| MS.gene065462.t1 | MTR_6g069570 | 75.385 | 65 | 15 | 1 | 345 | 408 | 125 | 189 | 2.96e-24 | 99.8 |
| MS.gene065462.t1 | MTR_7g037560 | 26.786 | 224 | 156 | 2 | 192 | 413 | 56 | 273 | 2.10e-18 | 87.4 |
| MS.gene065462.t1 | MTR_7g037560 | 27.027 | 222 | 154 | 2 | 192 | 411 | 117 | 332 | 3.23e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065462.t1 | AT1G56110 | 79.582 | 431 | 88 | 0 | 1 | 431 | 1 | 431 | 0.0 | 741 |
| MS.gene065462.t1 | AT3G12860 | 80.370 | 433 | 85 | 0 | 1 | 433 | 1 | 433 | 0.0 | 735 |
| MS.gene065462.t1 | AT3G05060 | 45.074 | 406 | 210 | 6 | 3 | 408 | 2 | 394 | 6.01e-111 | 337 |
| MS.gene065462.t1 | AT5G27120 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 4.72e-110 | 335 |
| MS.gene065462.t1 | AT5G27140 | 42.320 | 319 | 180 | 2 | 96 | 414 | 57 | 371 | 7.85e-77 | 246 |
| MS.gene065462.t1 | AT5G27140 | 42.006 | 319 | 179 | 3 | 96 | 414 | 57 | 369 | 1.86e-74 | 240 |
| MS.gene065462.t1 | AT1G60170 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 3.08e-15 | 78.2 |
Find 89 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 8.3:+18519578 | None:intergenic |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 8.3:-18519867 | MS.gene065462:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 8.3:+18519954 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 8.3:+18521809 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 8.3:+18521047 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 8.3:+18520319 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 8.3:-18520707 | MS.gene065462:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 8.3:-18521081 | MS.gene065462:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 8.3:-18520785 | MS.gene065462:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 8.3:-18519421 | MS.gene065462:CDS |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 8.3:-18520022 | MS.gene065462:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 8.3:+18519627 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 8.3:+18520168 | None:intergenic |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 8.3:-18519845 | MS.gene065462:intron |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 8.3:+18520042 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 8.3:-18520668 | MS.gene065462:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 8.3:-18520720 | MS.gene065462:CDS |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 8.3:+18520952 | None:intergenic |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 8.3:-18520348 | MS.gene065462:intron |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 8.3:-18521860 | MS.gene065462:CDS |
| ATCGCCAACCAAGTCAGTTA+AGG | 0.438260 | 8.3:+18520222 | None:intergenic |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 8.3:-18520278 | MS.gene065462:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 8.3:-18521911 | MS.gene065462:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 8.3:-18519310 | MS.gene065462:CDS |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 8.3:+18521810 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 8.3:-18521950 | MS.gene065462:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 8.3:-18519639 | MS.gene065462:CDS |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 8.3:-18519954 | MS.gene065462:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 8.3:-18520176 | MS.gene065462:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 8.3:-18520639 | MS.gene065462:intron |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 8.3:-18521057 | MS.gene065462:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 8.3:-18520932 | MS.gene065462:CDS |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 8.3:-18520263 | MS.gene065462:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 8.3:+18521856 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 8.3:+18520957 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | 8.3:-18521926 | MS.gene065462:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 8.3:-18521029 | MS.gene065462:CDS |
| TTGAAAGTGTTGATAAAGGT+AGG | 0.490467 | 8.3:-18519306 | MS.gene065462:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 8.3:-18519856 | MS.gene065462:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 8.3:+18520171 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.503464 | 8.3:-18520230 | MS.gene065462:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 8.3:-18521045 | MS.gene065462:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 8.3:+18519869 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 8.3:-18521779 | MS.gene065462:intron |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 8.3:-18520898 | MS.gene065462:intron |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | 8.3:+18521945 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 8.3:+18521769 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 8.3:+18519565 | None:intergenic |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 8.3:+18520740 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 8.3:-18520740 | MS.gene065462:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 8.3:-18520175 | MS.gene065462:intron |
| GAAGCCTTAACTGACTTGGT+TGG | 0.554526 | 8.3:-18520226 | MS.gene065462:CDS |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 8.3:+18521802 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 8.3:+18520015 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 8.3:+18519389 | None:intergenic |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 8.3:-18520939 | MS.gene065462:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 8.3:-18520016 | MS.gene065462:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 8.3:+18519870 | None:intergenic |
| TGAAAGTGTTGATAAAGGTA+GGG | 0.578156 | 8.3:-18519305 | MS.gene065462:CDS |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 8.3:+18520062 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 8.3:-18520769 | MS.gene065462:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 8.3:+18520630 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 8.3:+18521082 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | 8.3:+18521922 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 8.3:+18519607 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 8.3:-18519580 | MS.gene065462:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 8.3:-18520779 | MS.gene065462:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 8.3:+18519905 | None:intergenic |
| TGGAGGCAGTAGGTCTCATA+GGG | 0.599921 | 8.3:+18519279 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 8.3:-18519942 | MS.gene065462:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 8.3:-18520719 | MS.gene065462:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 8.3:-18521053 | MS.gene065462:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 8.3:-18520039 | MS.gene065462:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 8.3:-18519588 | MS.gene065462:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 8.3:+18520701 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 8.3:-18520078 | MS.gene065462:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 8.3:-18521008 | MS.gene065462:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 8.3:+18520668 | None:intergenic |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 8.3:+18521846 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 8.3:+18519341 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 8.3:+18519904 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 8.3:-18519918 | MS.gene065462:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 8.3:-18521091 | MS.gene065462:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 8.3:+18519340 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 8.3:+18519342 | None:intergenic |
| TGGCGATGAAGATAAAGCAA+AGG | 0.665007 | 8.3:-18520206 | MS.gene065462:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 8.3:+18520063 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 8.3:+18519871 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 8.3:+18520064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr8.3:18520874-18520893 | MS.gene065462:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | - | chr8.3:18519905-18519924 | MS.gene065462:CDS | 15.0% |
| !!! | ATAAAAATGACTTTTTTCAA+TGG | - | chr8.3:18519850-18519869 | MS.gene065462:CDS | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | - | chr8.3:18519904-18519923 | MS.gene065462:CDS | 15.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | + | chr8.3:18520433-18520452 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr8.3:18521449-18521468 | None:intergenic | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr8.3:18520443-18520462 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr8.3:18521764-18521783 | None:intergenic | 20.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | - | chr8.3:18519539-18519558 | MS.gene065462:CDS | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr8.3:18520019-18520038 | MS.gene065462:CDS | 20.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr8.3:18519556-18519575 | MS.gene065462:CDS | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | - | chr8.3:18519540-18519559 | MS.gene065462:CDS | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | + | chr8.3:18520434-18520453 | None:intergenic | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr8.3:18520978-18520997 | MS.gene065462:CDS | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr8.3:18520818-18520837 | MS.gene065462:intron | 25.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | - | chr8.3:18519538-18519557 | MS.gene065462:CDS | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr8.3:18519562-18519581 | MS.gene065462:CDS | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr8.3:18521632-18521651 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAAAAGATTATG+TGG | - | chr8.3:18519790-18519809 | MS.gene065462:intron | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr8.3:18519665-18519684 | MS.gene065462:intron | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr8.3:18521644-18521663 | MS.gene065462:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | + | chr8.3:18519949-18519968 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | + | chr8.3:18519992-18520011 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | - | chr8.3:18520129-18520148 | MS.gene065462:intron | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr8.3:18521443-18521462 | MS.gene065462:intron | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | + | chr8.3:18519991-18520010 | None:intergenic | 25.0% |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr8.3:18520203-18520222 | MS.gene065462:CDS | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr8.3:18520471-18520490 | MS.gene065462:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr8.3:18520536-18520555 | MS.gene065462:intron | 30.0% | |
| GACAAGTGACTGTTATTATT+GGG | - | chr8.3:18521534-18521553 | MS.gene065462:intron | 30.0% | |
| GACTAACTTACCTAAAGTTA+AGG | - | chr8.3:18520199-18520218 | MS.gene065462:CDS | 30.0% | |
| GAGTTTATTACCTTCAGAAA+CGG | + | chr8.3:18519490-18519509 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr8.3:18520211-18520230 | MS.gene065462:CDS | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr8.3:18520993-18521012 | MS.gene065462:CDS | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr8.3:18520858-18520877 | MS.gene065462:intron | 30.0% | |
| TGCATTTGAATTCAATAGCA+AGG | - | chr8.3:18520463-18520482 | MS.gene065462:intron | 30.0% | |
| TTACTATACAGGAAACAAAC+CGG | + | chr8.3:18521753-18521772 | None:intergenic | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr8.3:18520212-18520231 | None:intergenic | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr8.3:18520940-18520959 | None:intergenic | 30.0% | |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr8.3:18521886-18521905 | MS.gene065462:CDS | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr8.3:18520073-18520092 | MS.gene065462:CDS | 30.0% |
| !! | CAACATTTTGACAAGTTTGT+TGG | - | chr8.3:18520347-18520366 | MS.gene065462:intron | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | - | chr8.3:18521946-18521965 | MS.gene065462:CDS | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr8.3:18521731-18521750 | MS.gene065462:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | - | chr8.3:18521951-18521970 | MS.gene065462:CDS | 30.0% |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr8.3:18519722-18519741 | MS.gene065462:intron | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr8.3:18520074-18520093 | MS.gene065462:CDS | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | - | chr8.3:18521950-18521969 | MS.gene065462:CDS | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | - | chr8.3:18520132-18520151 | MS.gene065462:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr8.3:18521583-18521602 | MS.gene065462:intron | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | + | chr8.3:18519979-18519998 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr8.3:18521582-18521601 | MS.gene065462:intron | 30.0% |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | - | chr8.3:18521479-18521498 | MS.gene065462:intron | 30.0% |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr8.3:18521390-18521409 | None:intergenic | 35.0% | |
| AATTGAAGCCTTAACTGACT+TGG | - | chr8.3:18521026-18521045 | MS.gene065462:CDS | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr8.3:18521389-18521408 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | + | chr8.3:18521919-18521938 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | - | chr8.3:18519982-18520001 | MS.gene065462:CDS | 35.0% | |
| CCAACAAGTAAAAACACAAG+AGG | + | chr8.3:18520400-18520419 | None:intergenic | 35.0% | |
| GGACAAGTGACTGTTATTAT+TGG | - | chr8.3:18521533-18521552 | MS.gene065462:intron | 35.0% | |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr8.3:18520537-18520556 | MS.gene065462:intron | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr8.3:18521217-18521236 | MS.gene065462:intron | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr8.3:18521091-18521110 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr8.3:18521217-18521236 | None:intergenic | 35.0% | |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr8.3:18521162-18521181 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr8.3:18521389-18521408 | MS.gene065462:intron | 35.0% | |
| TGACATCAATGTTCTTACGA+GGG | + | chr8.3:18521918-18521937 | None:intergenic | 35.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr8.3:18519449-18519468 | None:intergenic | 35.0% | |
| TTTGATGTGCTTTGCTTGTT+TGG | - | chr8.3:18520050-18520069 | MS.gene065462:CDS | 35.0% | |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr8.3:18520374-18520393 | MS.gene065462:intron | 35.0% |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | - | chr8.3:18521512-18521531 | MS.gene065462:intron | 35.0% |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr8.3:18521885-18521904 | MS.gene065462:CDS | 35.0% |
| ! | TAACATAGTAAGTGTTGCCT+GGG | + | chr8.3:18520810-18520829 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr8.3:18520899-18520918 | MS.gene065462:CDS | 35.0% |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr8.3:18521158-18521177 | MS.gene065462:intron | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | + | chr8.3:18520811-18520830 | None:intergenic | 35.0% |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | - | chr8.3:18520397-18520416 | MS.gene065462:intron | 35.0% |
| !! | CTCTAAAATGAAAGGCTACT+AGG | + | chr8.3:18519941-18519960 | None:intergenic | 35.0% |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr8.3:18520227-18520246 | MS.gene065462:CDS | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr8.3:18521355-18521374 | None:intergenic | 40.0% | |
| ACAGGTCAAAATGGGCAAAA+GGG | + | chr8.3:18520425-18520444 | None:intergenic | 40.0% | |
| ACCTATCTGATTACAGGAGA+AGG | - | chr8.3:18521240-18521259 | MS.gene065462:intron | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr8.3:18521244-18521263 | None:intergenic | 40.0% | |
| AGAGGCAACACTCCTAAATA+TGG | - | chr8.3:18521617-18521636 | MS.gene065462:intron | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr8.3:18521354-18521373 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr8.3:18520591-18520610 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr8.3:18520588-18520607 | MS.gene065462:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr8.3:18521652-18521671 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr8.3:18519450-18519469 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr8.3:18521388-18521407 | None:intergenic | 40.0% | |
| GAATGACCATATTGTCAACC+CGG | + | chr8.3:18520558-18520577 | None:intergenic | 40.0% | |
| GACATCAATGTTCTTACGAG+GGG | + | chr8.3:18521917-18521936 | None:intergenic | 40.0% | |
| GCTTAACAACTTTACCGAAG+CGG | + | chr8.3:18519413-18519432 | None:intergenic | 40.0% | |
| TACAGGTCAAAATGGGCAAA+AGG | + | chr8.3:18520426-18520445 | None:intergenic | 40.0% | |
| TGGCGATGAAGATAAAGCAA+AGG | - | chr8.3:18521050-18521069 | MS.gene065462:CDS | 40.0% | |
| TTGGTGTGTTCTGCAGAAAA+GGG | - | chr8.3:18521820-18521839 | MS.gene065462:CDS | 40.0% | |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr8.3:18520317-18520336 | MS.gene065462:CDS | 40.0% | |
| ! | ACAAACTCGTTACTTTGGAC+TGG | + | chr8.3:18520302-18520321 | None:intergenic | 40.0% |
| ! | AGTGGGAGATTGTGATTTGT+GGG | - | chr8.3:18520758-18520777 | MS.gene065462:CDS | 40.0% |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr8.3:18520477-18520496 | MS.gene065462:intron | 40.0% |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr8.3:18521234-18521253 | MS.gene065462:intron | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr8.3:18520549-18520568 | MS.gene065462:intron | 40.0% |
| ! | TTCAGGGCATTAAAAACGAG+AGG | - | chr8.3:18521599-18521618 | MS.gene065462:intron | 40.0% |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | - | chr8.3:18521819-18521838 | MS.gene065462:CDS | 40.0% |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | - | chr8.3:18520358-18520377 | MS.gene065462:intron | 40.0% |
| !! | GAAAAGGGTACTTCAGCATT+TGG | - | chr8.3:18521835-18521854 | MS.gene065462:CDS | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | - | chr8.3:18520362-18520381 | MS.gene065462:intron | 40.0% |
| ATCGCCAACCAAGTCAGTTA+AGG | + | chr8.3:18521037-18521056 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr8.3:18520617-18520636 | MS.gene065462:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr8.3:18520177-18520196 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | - | chr8.3:18519477-18519496 | MS.gene065462:intron | 45.0% | |
| CAACACACACACACAAACCA+GGG | - | chr8.3:18520735-18520754 | MS.gene065462:CDS | 45.0% | |
| CATAACCAAGAGCAGTTTCG+TGG | + | chr8.3:18519314-18519333 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr8.3:18521302-18521321 | MS.gene065462:intron | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr8.3:18521305-18521324 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr8.3:18520626-18520645 | MS.gene065462:intron | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr8.3:18520629-18520648 | None:intergenic | 45.0% | |
| CGCACACAAACTCGTTACTT+TGG | + | chr8.3:18520307-18520326 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr8.3:18521195-18521214 | None:intergenic | 45.0% | |
| GAGTGGGAGATTGTGATTTG+TGG | - | chr8.3:18520757-18520776 | MS.gene065462:CDS | 45.0% | |
| GATTCCATGAGCTTCGAACA+AGG | + | chr8.3:18519337-18519356 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | - | chr8.3:18519345-18519364 | MS.gene065462:CDS | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr8.3:18521196-18521215 | None:intergenic | 45.0% | |
| GTATTATGACCGATGAGCTG+AGG | - | chr8.3:18520165-18520184 | MS.gene065462:intron | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr8.3:18521088-18521107 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr8.3:18521197-18521216 | None:intergenic | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr8.3:18520908-18520927 | MS.gene065462:CDS | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr8.3:18519457-18519476 | None:intergenic | 45.0% | |
| TTGCAAGATAGCGAGCCATT+CGG | + | chr8.3:18521694-18521713 | None:intergenic | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | + | chr8.3:18519403-18519422 | None:intergenic | 45.0% | |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | + | chr8.3:18520736-18520755 | None:intergenic | 45.0% |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr8.3:18521801-18521820 | MS.gene065462:CDS | 45.0% |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr8.3:18520248-18520267 | MS.gene065462:CDS | 45.0% |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | - | chr8.3:18519330-18519349 | MS.gene065462:CDS | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr8.3:18521400-18521419 | MS.gene065462:intron | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | + | chr8.3:18520735-18520754 | None:intergenic | 45.0% |
| !! | GAAGCCTTAACTGACTTGGT+TGG | - | chr8.3:18521030-18521049 | MS.gene065462:CDS | 45.0% |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr8.3:18520143-18520162 | MS.gene065462:intron | 45.0% |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr8.3:18521314-18521333 | MS.gene065462:intron | 45.0% |
| !! | TTCACATCTGCTTTTGCGCA+TGG | - | chr8.3:18520701-18520720 | MS.gene065462:CDS | 45.0% |
| AATCACAATCTCCCACTCCC+TGG | + | chr8.3:18520755-18520774 | None:intergenic | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | - | chr8.3:18520741-18520760 | MS.gene065462:CDS | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr8.3:18521178-18521197 | MS.gene065462:intron | 50.0% | |
| CCAACACACACACACAAACC+AGG | - | chr8.3:18520734-18520753 | MS.gene065462:CDS | 50.0% | |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr8.3:18520516-18520535 | MS.gene065462:intron | 50.0% | |
| CGAGCATCTGCCAGAAACAA+AGG | - | chr8.3:18521668-18521687 | MS.gene065462:intron | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | - | chr8.3:18519306-18519325 | MS.gene065462:CDS | 50.0% | |
| GCGAACTTATTCGTGGTGTC+AGG | - | chr8.3:18520324-18520343 | MS.gene065462:CDS | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | - | chr8.3:18521338-18521357 | MS.gene065462:intron | 50.0% | |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr8.3:18521795-18521814 | None:intergenic | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | - | chr8.3:18521676-18521695 | MS.gene065462:intron | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr8.3:18521681-18521700 | None:intergenic | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | + | chr8.3:18520737-18520756 | None:intergenic | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr8.3:18520175-18520194 | MS.gene065462:intron | 50.0% |
| ! | GATTTGGAGAAGGCACAGCT+TGG | - | chr8.3:18520487-18520506 | MS.gene065462:intron | 50.0% |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr8.3:18521870-18521889 | None:intergenic | 50.0% |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | - | chr8.3:18520709-18520728 | MS.gene065462:CDS | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr8.3:18520519-18520538 | None:intergenic | 50.0% |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr8.3:18521411-18521430 | MS.gene065462:intron | 50.0% |
| !! | GTTACCGATTTGAGCCGCTT+CGG | - | chr8.3:18519396-18519415 | MS.gene065462:CDS | 50.0% |
| CACACACACAAACCAGGGAG+TGG | - | chr8.3:18520740-18520759 | MS.gene065462:CDS | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | - | chr8.3:18520790-18520809 | MS.gene065462:intron | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr8.3:18520790-18520809 | None:intergenic | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr8.3:18521080-18521099 | MS.gene065462:CDS | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr8.3:18521081-18521100 | MS.gene065462:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18519294 | 18521984 | 18519294 | ID=MS.gene065462 |
| chr8.3 | mRNA | 18519294 | 18521984 | 18519294 | ID=MS.gene065462.t1;Parent=MS.gene065462 |
| chr8.3 | exon | 18521780 | 18521984 | 18521780 | ID=MS.gene065462.t1.exon1;Parent=MS.gene065462.t1 |
| chr8.3 | CDS | 18521780 | 18521984 | 18521780 | ID=cds.MS.gene065462.t1;Parent=MS.gene065462.t1 |
| chr8.3 | exon | 18520899 | 18521113 | 18520899 | ID=MS.gene065462.t1.exon2;Parent=MS.gene065462.t1 |
| chr8.3 | CDS | 18520899 | 18521113 | 18520899 | ID=cds.MS.gene065462.t1;Parent=MS.gene065462.t1 |
| chr8.3 | exon | 18520640 | 18520797 | 18520640 | ID=MS.gene065462.t1.exon3;Parent=MS.gene065462.t1 |
| chr8.3 | CDS | 18520640 | 18520797 | 18520640 | ID=cds.MS.gene065462.t1;Parent=MS.gene065462.t1 |
| chr8.3 | exon | 18520176 | 18520363 | 18520176 | ID=MS.gene065462.t1.exon4;Parent=MS.gene065462.t1 |
| chr8.3 | CDS | 18520176 | 18520363 | 18520176 | ID=cds.MS.gene065462.t1;Parent=MS.gene065462.t1 |
| chr8.3 | exon | 18519846 | 18520098 | 18519846 | ID=MS.gene065462.t1.exon5;Parent=MS.gene065462.t1 |
| chr8.3 | CDS | 18519846 | 18520098 | 18519846 | ID=cds.MS.gene065462.t1;Parent=MS.gene065462.t1 |
| chr8.3 | exon | 18519526 | 18519674 | 18519526 | ID=MS.gene065462.t1.exon6;Parent=MS.gene065462.t1 |
| chr8.3 | CDS | 18519526 | 18519674 | 18519526 | ID=cds.MS.gene065462.t1;Parent=MS.gene065462.t1 |
| chr8.3 | exon | 18519294 | 18519442 | 18519294 | ID=MS.gene065462.t1.exon7;Parent=MS.gene065462.t1 |
| chr8.3 | CDS | 18519294 | 18519442 | 18519294 | ID=cds.MS.gene065462.t1;Parent=MS.gene065462.t1 |
| Gene Sequence |
| Protein sequence |
