Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033348.t1 | XP_003608861.1 | 99.3 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 1.80E-239 | 838.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033348.t1 | O00567 | 59.4 | 431 | 171 | 1 | 3 | 433 | 4 | 430 | 1.6e-140 | 500.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033348.t1 | B7FLU4 | 99.3 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 1.3e-239 | 838.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033348.t1 | MTR_4g103790 | 99.306 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 0.0 | 890 |
| MS.gene033348.t1 | MTR_4g070910 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 2.03e-103 | 318 |
| MS.gene033348.t1 | MTR_5g010260 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 2.31e-102 | 317 |
| MS.gene033348.t1 | MTR_6g069570 | 75.385 | 65 | 15 | 1 | 345 | 408 | 125 | 189 | 2.96e-24 | 99.8 |
| MS.gene033348.t1 | MTR_7g037560 | 26.786 | 224 | 156 | 2 | 192 | 413 | 56 | 273 | 2.10e-18 | 87.4 |
| MS.gene033348.t1 | MTR_7g037560 | 27.027 | 222 | 154 | 2 | 192 | 411 | 117 | 332 | 3.23e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033348.t1 | AT1G56110 | 79.582 | 431 | 88 | 0 | 1 | 431 | 1 | 431 | 0.0 | 741 |
| MS.gene033348.t1 | AT3G12860 | 80.370 | 433 | 85 | 0 | 1 | 433 | 1 | 433 | 0.0 | 735 |
| MS.gene033348.t1 | AT3G05060 | 45.074 | 406 | 210 | 6 | 3 | 408 | 2 | 394 | 6.01e-111 | 337 |
| MS.gene033348.t1 | AT5G27120 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 4.72e-110 | 335 |
| MS.gene033348.t1 | AT5G27140 | 42.320 | 319 | 180 | 2 | 96 | 414 | 57 | 371 | 7.85e-77 | 246 |
| MS.gene033348.t1 | AT5G27140 | 42.006 | 319 | 179 | 3 | 96 | 414 | 57 | 369 | 1.86e-74 | 240 |
| MS.gene033348.t1 | AT1G60170 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 3.08e-15 | 78.2 |
Find 89 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 8.4:+21933553 | None:intergenic |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 8.4:-21933842 | MS.gene033348:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 8.4:+21933929 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 8.4:+21935784 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 8.4:+21935022 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 8.4:+21934294 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 8.4:-21934682 | MS.gene033348:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 8.4:-21935056 | MS.gene033348:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 8.4:-21934760 | MS.gene033348:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 8.4:-21933396 | MS.gene033348:CDS |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 8.4:-21933997 | MS.gene033348:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 8.4:+21933602 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 8.4:+21934143 | None:intergenic |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 8.4:-21933820 | MS.gene033348:intron |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 8.4:+21934017 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 8.4:-21934643 | MS.gene033348:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 8.4:-21934695 | MS.gene033348:CDS |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 8.4:+21934927 | None:intergenic |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 8.4:-21934323 | MS.gene033348:intron |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 8.4:-21935835 | MS.gene033348:CDS |
| ATCGCCAACCAAGTCAGTTA+AGG | 0.438260 | 8.4:+21934197 | None:intergenic |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 8.4:-21934253 | MS.gene033348:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 8.4:-21935886 | MS.gene033348:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 8.4:-21933285 | MS.gene033348:CDS |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 8.4:+21935785 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 8.4:-21935925 | MS.gene033348:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 8.4:-21933614 | MS.gene033348:CDS |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 8.4:-21933929 | MS.gene033348:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 8.4:-21934151 | MS.gene033348:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 8.4:-21934614 | MS.gene033348:intron |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 8.4:-21935032 | MS.gene033348:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 8.4:-21934907 | MS.gene033348:CDS |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 8.4:-21934238 | MS.gene033348:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 8.4:+21935831 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 8.4:+21934932 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | 8.4:-21935901 | MS.gene033348:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 8.4:-21935004 | MS.gene033348:CDS |
| TTGAAAGTGTTGATAAAGGT+AGG | 0.490467 | 8.4:-21933281 | MS.gene033348:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 8.4:-21933831 | MS.gene033348:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 8.4:+21934146 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.503464 | 8.4:-21934205 | MS.gene033348:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 8.4:-21935020 | MS.gene033348:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 8.4:+21933844 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 8.4:-21935754 | MS.gene033348:intron |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 8.4:-21934873 | MS.gene033348:intron |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | 8.4:+21935920 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 8.4:+21935744 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 8.4:+21933540 | None:intergenic |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 8.4:+21934715 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 8.4:-21934715 | MS.gene033348:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 8.4:-21934150 | MS.gene033348:intron |
| GAAGCCTTAACTGACTTGGT+TGG | 0.554526 | 8.4:-21934201 | MS.gene033348:CDS |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 8.4:+21935777 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 8.4:+21933990 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 8.4:+21933364 | None:intergenic |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 8.4:-21934914 | MS.gene033348:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 8.4:-21933991 | MS.gene033348:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 8.4:+21933845 | None:intergenic |
| TGAAAGTGTTGATAAAGGTA+GGG | 0.578156 | 8.4:-21933280 | MS.gene033348:CDS |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 8.4:+21934037 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 8.4:-21934744 | MS.gene033348:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 8.4:+21934605 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 8.4:+21935057 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | 8.4:+21935897 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 8.4:+21933582 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 8.4:-21933555 | MS.gene033348:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 8.4:-21934754 | MS.gene033348:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 8.4:+21933880 | None:intergenic |
| TGGAGGCAGTAGGTCTCATA+GGG | 0.599921 | 8.4:+21933254 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 8.4:-21933917 | MS.gene033348:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 8.4:-21934694 | MS.gene033348:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 8.4:-21935028 | MS.gene033348:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 8.4:-21934014 | MS.gene033348:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 8.4:-21933563 | MS.gene033348:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 8.4:+21934676 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 8.4:-21934053 | MS.gene033348:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 8.4:-21934983 | MS.gene033348:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 8.4:+21934643 | None:intergenic |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 8.4:+21935821 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 8.4:+21933316 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 8.4:+21933879 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 8.4:-21933893 | MS.gene033348:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 8.4:-21935066 | MS.gene033348:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 8.4:+21933315 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 8.4:+21933317 | None:intergenic |
| TGGCGATGAAGATAAAGCAA+AGG | 0.665007 | 8.4:-21934181 | MS.gene033348:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 8.4:+21934038 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 8.4:+21933846 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 8.4:+21934039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr8.4:21934849-21934868 | MS.gene033348:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | - | chr8.4:21933880-21933899 | MS.gene033348:CDS | 15.0% |
| !!! | ATAAAAATGACTTTTTTCAA+TGG | - | chr8.4:21933825-21933844 | MS.gene033348:CDS | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | - | chr8.4:21933879-21933898 | MS.gene033348:CDS | 15.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | + | chr8.4:21934408-21934427 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr8.4:21935424-21935443 | None:intergenic | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr8.4:21934418-21934437 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr8.4:21935739-21935758 | None:intergenic | 20.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | - | chr8.4:21933514-21933533 | MS.gene033348:CDS | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr8.4:21933994-21934013 | MS.gene033348:CDS | 20.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr8.4:21933531-21933550 | MS.gene033348:CDS | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | - | chr8.4:21933515-21933534 | MS.gene033348:CDS | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | + | chr8.4:21934409-21934428 | None:intergenic | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr8.4:21934953-21934972 | MS.gene033348:CDS | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr8.4:21934793-21934812 | MS.gene033348:intron | 25.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | - | chr8.4:21933513-21933532 | MS.gene033348:CDS | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr8.4:21933537-21933556 | MS.gene033348:CDS | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr8.4:21935607-21935626 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAAAAGATTATG+TGG | - | chr8.4:21933765-21933784 | MS.gene033348:intron | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr8.4:21933640-21933659 | MS.gene033348:intron | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr8.4:21935619-21935638 | MS.gene033348:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | + | chr8.4:21933924-21933943 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | + | chr8.4:21933967-21933986 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | - | chr8.4:21934104-21934123 | MS.gene033348:intron | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr8.4:21935418-21935437 | MS.gene033348:intron | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | + | chr8.4:21933966-21933985 | None:intergenic | 25.0% |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr8.4:21934178-21934197 | MS.gene033348:CDS | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr8.4:21934446-21934465 | MS.gene033348:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr8.4:21934511-21934530 | MS.gene033348:intron | 30.0% | |
| GACAAGTGACTGTTATTATT+GGG | - | chr8.4:21935509-21935528 | MS.gene033348:intron | 30.0% | |
| GACTAACTTACCTAAAGTTA+AGG | - | chr8.4:21934174-21934193 | MS.gene033348:CDS | 30.0% | |
| GAGTTTATTACCTTCAGAAA+CGG | + | chr8.4:21933465-21933484 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr8.4:21934186-21934205 | MS.gene033348:CDS | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr8.4:21934968-21934987 | MS.gene033348:CDS | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr8.4:21934833-21934852 | MS.gene033348:intron | 30.0% | |
| TGCATTTGAATTCAATAGCA+AGG | - | chr8.4:21934438-21934457 | MS.gene033348:intron | 30.0% | |
| TTACTATACAGGAAACAAAC+CGG | + | chr8.4:21935728-21935747 | None:intergenic | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr8.4:21934187-21934206 | None:intergenic | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr8.4:21934915-21934934 | None:intergenic | 30.0% | |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr8.4:21935861-21935880 | MS.gene033348:CDS | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr8.4:21934048-21934067 | MS.gene033348:CDS | 30.0% |
| !! | CAACATTTTGACAAGTTTGT+TGG | - | chr8.4:21934322-21934341 | MS.gene033348:intron | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | - | chr8.4:21935921-21935940 | MS.gene033348:CDS | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr8.4:21935706-21935725 | MS.gene033348:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | - | chr8.4:21935926-21935945 | MS.gene033348:CDS | 30.0% |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr8.4:21933697-21933716 | MS.gene033348:intron | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr8.4:21934049-21934068 | MS.gene033348:CDS | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | - | chr8.4:21935925-21935944 | MS.gene033348:CDS | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | - | chr8.4:21934107-21934126 | MS.gene033348:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr8.4:21935558-21935577 | MS.gene033348:intron | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | + | chr8.4:21933954-21933973 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr8.4:21935557-21935576 | MS.gene033348:intron | 30.0% |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | - | chr8.4:21935454-21935473 | MS.gene033348:intron | 30.0% |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr8.4:21935365-21935384 | None:intergenic | 35.0% | |
| AATTGAAGCCTTAACTGACT+TGG | - | chr8.4:21935001-21935020 | MS.gene033348:CDS | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr8.4:21935364-21935383 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | + | chr8.4:21935894-21935913 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | - | chr8.4:21933957-21933976 | MS.gene033348:CDS | 35.0% | |
| CCAACAAGTAAAAACACAAG+AGG | + | chr8.4:21934375-21934394 | None:intergenic | 35.0% | |
| GGACAAGTGACTGTTATTAT+TGG | - | chr8.4:21935508-21935527 | MS.gene033348:intron | 35.0% | |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr8.4:21934512-21934531 | MS.gene033348:intron | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr8.4:21935192-21935211 | MS.gene033348:intron | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr8.4:21935066-21935085 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr8.4:21935192-21935211 | None:intergenic | 35.0% | |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr8.4:21935137-21935156 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr8.4:21935364-21935383 | MS.gene033348:intron | 35.0% | |
| TGACATCAATGTTCTTACGA+GGG | + | chr8.4:21935893-21935912 | None:intergenic | 35.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr8.4:21933424-21933443 | None:intergenic | 35.0% | |
| TTTGATGTGCTTTGCTTGTT+TGG | - | chr8.4:21934025-21934044 | MS.gene033348:CDS | 35.0% | |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr8.4:21934349-21934368 | MS.gene033348:intron | 35.0% |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | - | chr8.4:21935487-21935506 | MS.gene033348:intron | 35.0% |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr8.4:21935860-21935879 | MS.gene033348:CDS | 35.0% |
| ! | TAACATAGTAAGTGTTGCCT+GGG | + | chr8.4:21934785-21934804 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr8.4:21934874-21934893 | MS.gene033348:CDS | 35.0% |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr8.4:21935133-21935152 | MS.gene033348:intron | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | + | chr8.4:21934786-21934805 | None:intergenic | 35.0% |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | - | chr8.4:21934372-21934391 | MS.gene033348:intron | 35.0% |
| !! | CTCTAAAATGAAAGGCTACT+AGG | + | chr8.4:21933916-21933935 | None:intergenic | 35.0% |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr8.4:21934202-21934221 | MS.gene033348:CDS | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr8.4:21935330-21935349 | None:intergenic | 40.0% | |
| ACAGGTCAAAATGGGCAAAA+GGG | + | chr8.4:21934400-21934419 | None:intergenic | 40.0% | |
| ACCTATCTGATTACAGGAGA+AGG | - | chr8.4:21935215-21935234 | MS.gene033348:intron | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr8.4:21935219-21935238 | None:intergenic | 40.0% | |
| AGAGGCAACACTCCTAAATA+TGG | - | chr8.4:21935592-21935611 | MS.gene033348:intron | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr8.4:21935329-21935348 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr8.4:21934566-21934585 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr8.4:21934563-21934582 | MS.gene033348:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr8.4:21935627-21935646 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr8.4:21933425-21933444 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr8.4:21935363-21935382 | None:intergenic | 40.0% | |
| GAATGACCATATTGTCAACC+CGG | + | chr8.4:21934533-21934552 | None:intergenic | 40.0% | |
| GACATCAATGTTCTTACGAG+GGG | + | chr8.4:21935892-21935911 | None:intergenic | 40.0% | |
| GCTTAACAACTTTACCGAAG+CGG | + | chr8.4:21933388-21933407 | None:intergenic | 40.0% | |
| TACAGGTCAAAATGGGCAAA+AGG | + | chr8.4:21934401-21934420 | None:intergenic | 40.0% | |
| TGGCGATGAAGATAAAGCAA+AGG | - | chr8.4:21935025-21935044 | MS.gene033348:CDS | 40.0% | |
| TTGGTGTGTTCTGCAGAAAA+GGG | - | chr8.4:21935795-21935814 | MS.gene033348:CDS | 40.0% | |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr8.4:21934292-21934311 | MS.gene033348:CDS | 40.0% | |
| ! | ACAAACTCGTTACTTTGGAC+TGG | + | chr8.4:21934277-21934296 | None:intergenic | 40.0% |
| ! | AGTGGGAGATTGTGATTTGT+GGG | - | chr8.4:21934733-21934752 | MS.gene033348:CDS | 40.0% |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr8.4:21934452-21934471 | MS.gene033348:intron | 40.0% |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr8.4:21935209-21935228 | MS.gene033348:intron | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr8.4:21934524-21934543 | MS.gene033348:intron | 40.0% |
| ! | TTCAGGGCATTAAAAACGAG+AGG | - | chr8.4:21935574-21935593 | MS.gene033348:intron | 40.0% |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | - | chr8.4:21935794-21935813 | MS.gene033348:CDS | 40.0% |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | - | chr8.4:21934333-21934352 | MS.gene033348:intron | 40.0% |
| !! | GAAAAGGGTACTTCAGCATT+TGG | - | chr8.4:21935810-21935829 | MS.gene033348:CDS | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | - | chr8.4:21934337-21934356 | MS.gene033348:intron | 40.0% |
| ATCGCCAACCAAGTCAGTTA+AGG | + | chr8.4:21935012-21935031 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr8.4:21934592-21934611 | MS.gene033348:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr8.4:21934152-21934171 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | - | chr8.4:21933452-21933471 | MS.gene033348:intron | 45.0% | |
| CAACACACACACACAAACCA+GGG | - | chr8.4:21934710-21934729 | MS.gene033348:CDS | 45.0% | |
| CATAACCAAGAGCAGTTTCG+TGG | + | chr8.4:21933289-21933308 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr8.4:21935277-21935296 | MS.gene033348:intron | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr8.4:21935280-21935299 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr8.4:21934601-21934620 | MS.gene033348:intron | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr8.4:21934604-21934623 | None:intergenic | 45.0% | |
| CGCACACAAACTCGTTACTT+TGG | + | chr8.4:21934282-21934301 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr8.4:21935170-21935189 | None:intergenic | 45.0% | |
| GAGTGGGAGATTGTGATTTG+TGG | - | chr8.4:21934732-21934751 | MS.gene033348:CDS | 45.0% | |
| GATTCCATGAGCTTCGAACA+AGG | + | chr8.4:21933312-21933331 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | - | chr8.4:21933320-21933339 | MS.gene033348:CDS | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr8.4:21935171-21935190 | None:intergenic | 45.0% | |
| GTATTATGACCGATGAGCTG+AGG | - | chr8.4:21934140-21934159 | MS.gene033348:intron | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr8.4:21935063-21935082 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr8.4:21935172-21935191 | None:intergenic | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr8.4:21934883-21934902 | MS.gene033348:CDS | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr8.4:21933432-21933451 | None:intergenic | 45.0% | |
| TTGCAAGATAGCGAGCCATT+CGG | + | chr8.4:21935669-21935688 | None:intergenic | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | + | chr8.4:21933378-21933397 | None:intergenic | 45.0% | |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | + | chr8.4:21934711-21934730 | None:intergenic | 45.0% |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr8.4:21935776-21935795 | MS.gene033348:CDS | 45.0% |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr8.4:21934223-21934242 | MS.gene033348:CDS | 45.0% |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | - | chr8.4:21933305-21933324 | MS.gene033348:CDS | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr8.4:21935375-21935394 | MS.gene033348:intron | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | + | chr8.4:21934710-21934729 | None:intergenic | 45.0% |
| !! | GAAGCCTTAACTGACTTGGT+TGG | - | chr8.4:21935005-21935024 | MS.gene033348:CDS | 45.0% |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr8.4:21934118-21934137 | MS.gene033348:intron | 45.0% |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr8.4:21935289-21935308 | MS.gene033348:intron | 45.0% |
| !! | TTCACATCTGCTTTTGCGCA+TGG | - | chr8.4:21934676-21934695 | MS.gene033348:CDS | 45.0% |
| AATCACAATCTCCCACTCCC+TGG | + | chr8.4:21934730-21934749 | None:intergenic | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | - | chr8.4:21934716-21934735 | MS.gene033348:CDS | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr8.4:21935153-21935172 | MS.gene033348:intron | 50.0% | |
| CCAACACACACACACAAACC+AGG | - | chr8.4:21934709-21934728 | MS.gene033348:CDS | 50.0% | |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr8.4:21934491-21934510 | MS.gene033348:intron | 50.0% | |
| CGAGCATCTGCCAGAAACAA+AGG | - | chr8.4:21935643-21935662 | MS.gene033348:intron | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | - | chr8.4:21933281-21933300 | MS.gene033348:CDS | 50.0% | |
| GCGAACTTATTCGTGGTGTC+AGG | - | chr8.4:21934299-21934318 | MS.gene033348:CDS | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | - | chr8.4:21935313-21935332 | MS.gene033348:intron | 50.0% | |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr8.4:21935770-21935789 | None:intergenic | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | - | chr8.4:21935651-21935670 | MS.gene033348:intron | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr8.4:21935656-21935675 | None:intergenic | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | + | chr8.4:21934712-21934731 | None:intergenic | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr8.4:21934150-21934169 | MS.gene033348:intron | 50.0% |
| ! | GATTTGGAGAAGGCACAGCT+TGG | - | chr8.4:21934462-21934481 | MS.gene033348:intron | 50.0% |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr8.4:21935845-21935864 | None:intergenic | 50.0% |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | - | chr8.4:21934684-21934703 | MS.gene033348:CDS | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr8.4:21934494-21934513 | None:intergenic | 50.0% |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr8.4:21935386-21935405 | MS.gene033348:intron | 50.0% |
| !! | GTTACCGATTTGAGCCGCTT+CGG | - | chr8.4:21933371-21933390 | MS.gene033348:CDS | 50.0% |
| CACACACACAAACCAGGGAG+TGG | - | chr8.4:21934715-21934734 | MS.gene033348:CDS | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | - | chr8.4:21934765-21934784 | MS.gene033348:intron | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr8.4:21934765-21934784 | None:intergenic | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr8.4:21935055-21935074 | MS.gene033348:CDS | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr8.4:21935056-21935075 | MS.gene033348:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 21933269 | 21935959 | 21933269 | ID=MS.gene033348 |
| chr8.4 | mRNA | 21933269 | 21935959 | 21933269 | ID=MS.gene033348.t1;Parent=MS.gene033348 |
| chr8.4 | exon | 21935755 | 21935959 | 21935755 | ID=MS.gene033348.t1.exon1;Parent=MS.gene033348.t1 |
| chr8.4 | CDS | 21935755 | 21935959 | 21935755 | ID=cds.MS.gene033348.t1;Parent=MS.gene033348.t1 |
| chr8.4 | exon | 21934874 | 21935088 | 21934874 | ID=MS.gene033348.t1.exon2;Parent=MS.gene033348.t1 |
| chr8.4 | CDS | 21934874 | 21935088 | 21934874 | ID=cds.MS.gene033348.t1;Parent=MS.gene033348.t1 |
| chr8.4 | exon | 21934615 | 21934772 | 21934615 | ID=MS.gene033348.t1.exon3;Parent=MS.gene033348.t1 |
| chr8.4 | CDS | 21934615 | 21934772 | 21934615 | ID=cds.MS.gene033348.t1;Parent=MS.gene033348.t1 |
| chr8.4 | exon | 21934151 | 21934338 | 21934151 | ID=MS.gene033348.t1.exon4;Parent=MS.gene033348.t1 |
| chr8.4 | CDS | 21934151 | 21934338 | 21934151 | ID=cds.MS.gene033348.t1;Parent=MS.gene033348.t1 |
| chr8.4 | exon | 21933821 | 21934073 | 21933821 | ID=MS.gene033348.t1.exon5;Parent=MS.gene033348.t1 |
| chr8.4 | CDS | 21933821 | 21934073 | 21933821 | ID=cds.MS.gene033348.t1;Parent=MS.gene033348.t1 |
| chr8.4 | exon | 21933501 | 21933649 | 21933501 | ID=MS.gene033348.t1.exon6;Parent=MS.gene033348.t1 |
| chr8.4 | CDS | 21933501 | 21933649 | 21933501 | ID=cds.MS.gene033348.t1;Parent=MS.gene033348.t1 |
| chr8.4 | exon | 21933269 | 21933417 | 21933269 | ID=MS.gene033348.t1.exon7;Parent=MS.gene033348.t1 |
| chr8.4 | CDS | 21933269 | 21933417 | 21933269 | ID=cds.MS.gene033348.t1;Parent=MS.gene033348.t1 |
| Gene Sequence |
| Protein sequence |
