AlfalfaGEDB | MS.gene011390

M. sativa cultivar XinJiangDaYe / MS.gene011390

KEGG: K14564
GO: -
PFAM: PF01798.21 PF08156.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011390.t1	XP_003608861.1	99.1	442	3	1	1	441	1	442	5.40E-243	850.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011390.t1	O00567	59.4	431	171	1	3	433	4	430	2.5e-140	500.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011390.t1	B7FLU4	99.1	442	3	1	1	441	1	442	3.9e-243	850.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene005792	MS.gene011390	PPI
MS.gene011390	MS.gene62426	PPI
MS.gene011390	MS.gene037324	PPI
MS.gene011390	MS.gene79130	PPI
MS.gene011390	MS.gene054186	PPI
MS.gene011390	MS.gene015586	PPI
MS.gene011390	MS.gene045843	PPI
MS.gene011390	MS.gene003290	PPI
MS.gene011390	MS.gene056257	PPI
MS.gene011390	MS.gene77531	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011390.t1	MTR_4g103790	98.664	524	6	1	1	523	1	524	0.0	1050
MS.gene011390.t1	MTR_4g070910	43.243	407	216	4	3	408	1	393	5.74e-103	320
MS.gene011390.t1	MTR_5g010260	42.892	408	216	5	3	408	1	393	1.78e-102	320
MS.gene011390.t1	MTR_6g069570	75.385	65	15	1	345	408	125	189	2.25e-24	100
MS.gene011390.t1	MTR_7g037560	27.273	220	152	2	192	409	117	330	4.19e-18	87.4
MS.gene011390.t1	MTR_7g037560	27.027	222	154	2	192	411	56	271	4.32e-18	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011390.t1	AT1G56110	78.899	436	92	0	1	436	1	436	0.0	749
MS.gene011390.t1	AT3G12860	79.909	438	88	0	1	438	1	438	0.0	743
MS.gene011390.t1	AT3G05060	43.578	436	232	7	3	437	2	424	4.76e-110	338
MS.gene011390.t1	AT5G27120	45.320	406	209	6	3	408	1	393	2.10e-109	336
MS.gene011390.t1	AT5G27140	40.385	364	205	4	96	456	57	411	2.75e-78	253
MS.gene011390.t1	AT5G27140	40.110	364	204	5	96	456	57	409	6.56e-76	246
MS.gene011390.t1	AT1G60170	25.850	147	109	0	273	419	194	340	4.55e-15	78.2

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Find 99 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGAGAAGAGAAAGT+TGG	0.395833	8.3:-18561331	MS.gene011390:CDS
AACTGTTGCAGATACAGAAA+TGG	0.437507	8.3:-18561490	MS.gene011390:intron
AACTTACCTAAAGTTAAGGA+AGG	0.604940	8.3:-18563492	MS.gene011390:CDS
AAGAAGGCAAAGTTCAGCTT+AGG	0.488720	8.3:-18563468	MS.gene011390:CDS
AAGAATCTGAAGAGTTGAAG+AGG	0.512414	8.3:+18562308	None:intergenic
AAGGCTGCAGAAATTACAAA+TGG	0.539269	8.3:-18561390	MS.gene011390:CDS
AATTACAAATGGTGATGCGG+AGG	0.625035	8.3:-18561379	MS.gene011390:CDS
AATTCAATAGCAAGGTGATT+TGG	0.344786	8.3:-18563224	MS.gene011390:intron
AATTGAAGCCTTAACTGACT+TGG	0.503464	8.3:-18562669	MS.gene011390:CDS
AATTTGTGAGACTACCAGCA+TGG	0.634495	8.3:+18562343	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGAGAAGAGAAAGT+TGG	-	chr8.3:18564301-18564320	MS.gene011390:CDS	30.0%
AACTTACCTAAAGTTAAGGA+AGG	-	chr8.3:18562140-18562159	MS.gene011390:intron	30.0%
AATTCAATAGCAAGGTGATT+TGG	-	chr8.3:18562408-18562427	MS.gene011390:CDS	30.0%
AGGTTAAGTTCAATGTAAAC+CGG	-	chr8.3:18562473-18562492	MS.gene011390:CDS	30.0%
CATATAGCATCACCAAAAAA+TGG	+	chr8.3:18564016-18564035	None:intergenic	30.0%
GACAAGTGACTGTTATTATT+GGG	-	chr8.3:18563471-18563490	MS.gene011390:CDS	30.0%
GACTAACTTACCTAAAGTTA+AGG	-	chr8.3:18562136-18562155	MS.gene011390:intron	30.0%
GAGTTTATTACCTTCAGAAA+CGG	+	chr8.3:18561426-18561445	None:intergenic	30.0%
TAAAGTTAAGGAAGGTAAGA+AGG	-	chr8.3:18562148-18562167	MS.gene011390:intron	30.0%
TATTGAGGATAAGTCTAAGT+TGG	-	chr8.3:18562930-18562949	MS.gene011390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	18561230	18564424	18561230	ID=MS.gene011390
chr8.3	mRNA	18561230	18564424	18561230	ID=MS.gene011390.t1;Parent=MS.gene011390
chr8.3	exon	18564220	18564424	18564220	ID=MS.gene011390.t1.exon1;Parent=MS.gene011390.t1
chr8.3	CDS	18564220	18564424	18564220	ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1
chr8.3	exon	18563338	18563552	18563338	ID=MS.gene011390.t1.exon2;Parent=MS.gene011390.t1
chr8.3	CDS	18563338	18563552	18563338	ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1
chr8.3	exon	18563079	18563236	18563079	ID=MS.gene011390.t1.exon3;Parent=MS.gene011390.t1
chr8.3	CDS	18563079	18563236	18563079	ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1
chr8.3	exon	18562615	18562802	18562615	ID=MS.gene011390.t1.exon4;Parent=MS.gene011390.t1
chr8.3	CDS	18562615	18562802	18562615	ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1
chr8.3	exon	18562285	18562537	18562285	ID=MS.gene011390.t1.exon5;Parent=MS.gene011390.t1
chr8.3	CDS	18562285	18562537	18562285	ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1
chr8.3	exon	18561965	18562113	18561965	ID=MS.gene011390.t1.exon6;Parent=MS.gene011390.t1
chr8.3	CDS	18561965	18562113	18561965	ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1
chr8.3	exon	18561750	18561881	18561750	ID=MS.gene011390.t1.exon7;Parent=MS.gene011390.t1
chr8.3	CDS	18561750	18561881	18561750	ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1
chr8.3	exon	18561230	18561501	18561230	ID=MS.gene011390.t1.exon8;Parent=MS.gene011390.t1
chr8.3	CDS	18561230	18561501	18561230	ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1

Gene Sequence

>MS.gene011390

ATGGCACTCTTTCTTCTCCACGAAACTGCTCTTGGTTATGCCTTGTTCGAAGCTCATGGAATCGACGAAATCGGTCAGAACACTGAAGCTGTTCGCAACTCTGTTACCGATTTGAGCCGCTTCGGTAAAGTTGTTAAGCTTCGTTCGTTCAACCCTTTTACCTCTGCTCTTGAAAGTCTCGAACAAATCAACGCCGTTTCTGAAGGTAATAAACTCTCAGTTTTTATTCTTAATAAACTCTGCTGTATGAATCTGTTATGTAATAGGGGTTATTTATTTAACTGGTACTGGTTTTAATCTTGTAAAAATATCATTTTTTTTAATGTGTGTAGTTTTTTTCTTTTTCTGTTATAATGAATCAACTATATTGTGAATGTTGTTTATGAAGCTTTAGGCTTTAGTTGTTATAATTATTATTGAGTTTTTTTGTTAGTTTGTTTCAGTATGCATGGTTTGATAGATGCTGTGTTATTAGTAGTGAACTCAAATGCTTTTGTTTCAGCTAAAAAAGATTATGTGGTAAAAAATCTGAATCTATTTCTGTTTGTTTACTACTCATAAAAATGACTTTTTTCAATGGTTTTTAACTTGTTCATGTGTTAACTCATTGTTTTTGAAGAAATATATATCTTGGGAAAAGCTAATCCTAGTAGCCTTTCATTTTAGAGTCGATTTTTTAAAATCCTAAACAAACACCCAAAAATGACAAAGGTGATAATTTTTATACAAGAAATAGATATTTGTTAAGGATGTTTATTTTGATGTGCTTTGCTTGTTTGGTTTCGATATGCTATGTTTTGAGGGAACTCAAGCTTTTGTTTCAATTTTGTTAGTTTCTTAAGTTGTTTTTGTTTGTTGGTGGCGATGTAAAGGTATTATGACCGATGAGCTGAGGACTGTTTTGGAGACTAACTTACCTAAAGTTAAGGAAGGTAAGAAGGCAAAGTTCAGCTTAGGTGTAGCAGAGTCTAAGATCGGTTCACATATACATGAAGCAACTAAAATTCCAGTCCAAAGTAACGAGTTTGTGTGCGAACTTATTCGTGGTGTCAGGCAACATTTTGACAAGTTTGTTGGTGATCTCAAGGTTGGCATTTATTTTGGCCTCTTGTGTTTTTACTTGTTGGAACCCTTTTGCCCATTTTGACCTGTATTTTTTTGTTTCTTTTCTGCATTTGAATTCAATAGCAAGGTGATTTGGAGAAGGCACAGCTTGGTCTTTGCCACAGTTACAGCAGAGCTAAGGTTAAGTTCAATGTAAACCGGGTTGACAATATGGTCATTCAAGCAATCTTCCTTCTCGATACACTTGATAAGGATGTCAATTCATTCGCCATGAGAGTCAGGTACTATAGGCTTAACATCAATACTCATTCAGATATGCATTATTTTTATATATTTGAAATAGTTCACATCTGCTTTTGCGCATGGTCTACTGGCCCCAACACACACACACAAACCAGGGAGTGGGAGATTGTGATTTGTGGGTTATAACCACTCAAGCACACAAGTGTCCCAGGCAACACTTACTATGTTAACATCATATGGACAAATAGTTTACATCTTCAGAGAGCTATAAACTTATAGGATTATTTATCTATTGGTTTATCAATTTTGTGCAGAGAGTGGTATTCATGGCATTTTCCTGAACTTGTGAAGATTGTAAATGATAATTATCTGTATTGCAAAGTTGCAAAATTTATTGAGGATAAGTCTAAGTTGGCTGAAGACAAAATTGAAGCCTTAACTGACTTGGTTGGCGATGAAGATAAAGCAAAGGAGATTGTAGAAGCCGCCAAAGCGTCAATGGGTATAATATCTTATTTTTGTGTTTTGCTTGTTTTACTTTTTATTCTCTTTCTGAATCCTTTGTCTCTCTATTTTCAGGACAAGATTTGTCCCCTGTGGACTTGATCAATGTCCATATGTTTGCACAAAGAGTGATGGACCTATCTGATTACAGGAGAAGGTTGTCTGATTATCTGAGCACTAAAATGAATGATATTGCACCAAATTTGCAGTCGCTAGTTGGTGATAGTGTTGGTGCTCGTTTGATATCCCATGCTGGTAGTCTCACAAATTTAGCTAAGTGCCCCTCTTCAACTCTTCAGATTCTTGGTGCAGAGAAGGCTTTGTTCAGGTTTTTAACTTGTCCTTGATGTTTAATTTTAGGTTTGAACTACTTATTTTTTTCATAGAAACGAGCAGGCTTCACTTGAGAAACTGTTTGTGTTTTGTCAGGACAAGTGACTGTTATTATTGGGTTTTGTCATTGCATCACTTTGATATTCTTTTTTCGTGCTTTATTCAGGGCATTAAAAACGAGAGGCAACACTCCTAAATATGGTCTTATATTCCACTCTTCTTTTATTGGTCGAGCATCTGCCAGAAACAAAGGCCGAATGGCTCGCTATCTTGCAAACAAATGCTCAATTGCATCAAGAATAGATTGCTTTTCCGGTTTGTTTCCTGTATAGTAATTTTATCTATCTCTTGCTTCCTTACGCTGCGCATCTGAATCATGCTTTTGGTGTGTTCTGCAGAAAAGGGTACTTCAGCATTTGGAGATAAACTCCGTGAGCAAGTTGAAGAGCGACTTGACTTTTATGATAAGGGAGTTGCCCCTCGTAAGAACATTGATGTCATGAAGTCTGCTATTGAAAGTGTTGATAAAGGTAGGGATGCCCTATGAGACCTACTGCCTCCATCTCATTTTCTCATAGCATGAATTTGGTTGTCATCACTGTTGTATATTTCTGCCTGCTACTACATGGGGGTCTTTTCCATTTTTTGGTGATGCTATATGGTGGAATGTTTAATTTGTTTTAACTTGAGAGCATTACAGTGCTTATTGCATATATGTAGTTCCTAATGCACTACATAAATTATAGTTCTTTTTGCTGATTTACATGAACTGTTGCAGATACAGAAATGGAAACAGAAGAAGTTTCAGCCAAGAAAACCAAGAAGAAGAAGCAAAAAGCTGCAGATGGAGATGACATGGCTGTAGATAAGGCTGCAGAAATTACAAATGGTGATGCGGAGGATCACAAGTCAGAAAAGAAGAAGAAAAAGAAAGAGAAGAGAAAGTTGGATCAGGAGGATGAAGTTCAGGATAAGGTTGTAGATGATGGTGCCAACGCTGATTCAAGCAAGAAGAAGAAAAAGAAATCAAAAAAGAAGGATGCTGAATAA

Protein sequence

>MS.gene011390.t1

MALFLLHETALGYALFEAHGIDEIGQNTEAVRNSVTDLSRFGKVVKLRSFNPFTSALESLEQINAVSEGIMTDELRTVLETNLPKVKEGKKAKFSLGVAESKIGSHIHEATKIPVQSNEFVCELIRGVRQHFDKFVGDLKQGDLEKAQLGLCHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFAMRVREWYSWHFPELVKIVNDNYLYCKVAKFIEDKSKLAEDKIEALTDLVGDEDKAKEIVEAAKASMGQDLSPVDLINVHMFAQRVMDLSDYRRRLSDYLSTKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFSEKGTSAFGDKLREQVEERLDFYDKGVAPRKNIDVMKSAIESVDKDTEMETEEVSAKKTKKKKQKAADGDDMAVDKAAEITNGDAEDHKSEKKKKKKEKRKLDQEDEVQDKVVDDGANADSSKKKKKKSKKKDAE