Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011390.t1 | XP_003608861.1 | 99.1 | 442 | 3 | 1 | 1 | 441 | 1 | 442 | 5.40E-243 | 850.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011390.t1 | O00567 | 59.4 | 431 | 171 | 1 | 3 | 433 | 4 | 430 | 2.5e-140 | 500.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011390.t1 | B7FLU4 | 99.1 | 442 | 3 | 1 | 1 | 441 | 1 | 442 | 3.9e-243 | 850.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011390.t1 | MTR_4g103790 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| MS.gene011390.t1 | MTR_4g070910 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 5.74e-103 | 320 |
| MS.gene011390.t1 | MTR_5g010260 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 1.78e-102 | 320 |
| MS.gene011390.t1 | MTR_6g069570 | 75.385 | 65 | 15 | 1 | 345 | 408 | 125 | 189 | 2.25e-24 | 100 |
| MS.gene011390.t1 | MTR_7g037560 | 27.273 | 220 | 152 | 2 | 192 | 409 | 117 | 330 | 4.19e-18 | 87.4 |
| MS.gene011390.t1 | MTR_7g037560 | 27.027 | 222 | 154 | 2 | 192 | 411 | 56 | 271 | 4.32e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011390.t1 | AT1G56110 | 78.899 | 436 | 92 | 0 | 1 | 436 | 1 | 436 | 0.0 | 749 |
| MS.gene011390.t1 | AT3G12860 | 79.909 | 438 | 88 | 0 | 1 | 438 | 1 | 438 | 0.0 | 743 |
| MS.gene011390.t1 | AT3G05060 | 43.578 | 436 | 232 | 7 | 3 | 437 | 2 | 424 | 4.76e-110 | 338 |
| MS.gene011390.t1 | AT5G27120 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 2.10e-109 | 336 |
| MS.gene011390.t1 | AT5G27140 | 40.385 | 364 | 205 | 4 | 96 | 456 | 57 | 411 | 2.75e-78 | 253 |
| MS.gene011390.t1 | AT5G27140 | 40.110 | 364 | 204 | 5 | 96 | 456 | 57 | 409 | 6.56e-76 | 246 |
| MS.gene011390.t1 | AT1G60170 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 4.55e-15 | 78.2 |
Find 99 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 8.3:+18562017 | None:intergenic |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 8.3:-18562306 | MS.gene011390:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 8.3:+18562393 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 8.3:+18564249 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 8.3:+18563486 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 8.3:+18562758 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 8.3:-18563146 | MS.gene011390:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 8.3:-18563520 | MS.gene011390:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 8.3:-18563224 | MS.gene011390:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 8.3:-18561860 | MS.gene011390:CDS |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 8.3:-18562461 | MS.gene011390:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 8.3:+18562066 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 8.3:+18562607 | None:intergenic |
| AAAGAAAGAGAAGAGAAAGT+TGG | 0.395833 | 8.3:-18561331 | MS.gene011390:CDS |
| GGATCAGGAGGATGAAGTTC+AGG | 0.398273 | 8.3:-18561310 | MS.gene011390:CDS |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 8.3:-18562284 | MS.gene011390:intron |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 8.3:+18562481 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 8.3:-18563107 | MS.gene011390:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 8.3:-18563159 | MS.gene011390:CDS |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 8.3:+18563391 | None:intergenic |
| AGAGAAGAGAAAGTTGGATC+AGG | 0.424350 | 8.3:-18561325 | MS.gene011390:CDS |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 8.3:-18562787 | MS.gene011390:intron |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 8.3:-18564300 | MS.gene011390:CDS |
| AACTGTTGCAGATACAGAAA+TGG | 0.437507 | 8.3:-18561490 | MS.gene011390:intron |
| ATCGCCAACCAAGTCAGTTA+AGG | 0.438260 | 8.3:+18562661 | None:intergenic |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 8.3:-18562717 | MS.gene011390:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 8.3:-18564351 | MS.gene011390:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 8.3:-18561749 | MS.gene011390:intron |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 8.3:+18564250 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 8.3:-18564390 | MS.gene011390:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 8.3:-18562078 | MS.gene011390:CDS |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 8.3:-18562393 | MS.gene011390:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 8.3:-18562615 | MS.gene011390:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 8.3:-18563078 | MS.gene011390:intron |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 8.3:-18563496 | MS.gene011390:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 8.3:-18563371 | MS.gene011390:CDS |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 8.3:-18562702 | MS.gene011390:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 8.3:+18564296 | None:intergenic |
| GGAGGATGAAGTTCAGGATA+AGG | 0.480853 | 8.3:-18561304 | MS.gene011390:CDS |
| CTTCTTGCTTGAATCAGCGT+TGG | 0.485532 | 8.3:+18561266 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 8.3:+18563396 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | 8.3:-18564366 | MS.gene011390:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 8.3:-18563468 | MS.gene011390:CDS |
| GAAGAGAAAGTTGGATCAGG+AGG | 0.491231 | 8.3:-18561322 | MS.gene011390:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 8.3:-18562295 | MS.gene011390:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 8.3:+18562610 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.503464 | 8.3:-18562669 | MS.gene011390:CDS |
| CAGGATAAGGTTGTAGATGA+TGG | 0.505235 | 8.3:-18561291 | MS.gene011390:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 8.3:-18563484 | MS.gene011390:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 8.3:+18562308 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 8.3:-18564219 | MS.gene011390:intron |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 8.3:-18563337 | MS.gene011390:intron |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | 8.3:+18564385 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 8.3:+18564209 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 8.3:+18562004 | None:intergenic |
| AAGGCTGCAGAAATTACAAA+TGG | 0.539269 | 8.3:-18561390 | MS.gene011390:CDS |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 8.3:+18563179 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 8.3:-18563179 | MS.gene011390:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 8.3:-18562614 | MS.gene011390:intron |
| GAAGCCTTAACTGACTTGGT+TGG | 0.554526 | 8.3:-18562665 | MS.gene011390:CDS |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 8.3:+18564242 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 8.3:+18562454 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 8.3:+18561828 | None:intergenic |
| AGATGACATGGCTGTAGATA+AGG | 0.568881 | 8.3:-18561409 | MS.gene011390:CDS |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 8.3:-18563378 | MS.gene011390:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 8.3:-18562455 | MS.gene011390:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 8.3:+18562309 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 8.3:+18562501 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 8.3:-18563208 | MS.gene011390:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 8.3:+18563069 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 8.3:+18563521 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | 8.3:+18564362 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 8.3:+18562046 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 8.3:-18562019 | MS.gene011390:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 8.3:-18563218 | MS.gene011390:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 8.3:+18562344 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 8.3:-18562381 | MS.gene011390:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 8.3:-18563158 | MS.gene011390:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 8.3:-18563492 | MS.gene011390:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 8.3:-18562478 | MS.gene011390:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 8.3:-18562027 | MS.gene011390:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 8.3:+18563140 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 8.3:-18562517 | MS.gene011390:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 8.3:-18563447 | MS.gene011390:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 8.3:+18563107 | None:intergenic |
| AATTACAAATGGTGATGCGG+AGG | 0.625035 | 8.3:-18561379 | MS.gene011390:CDS |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 8.3:+18564286 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 8.3:+18561780 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 8.3:+18562343 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 8.3:-18562357 | MS.gene011390:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 8.3:-18563530 | MS.gene011390:CDS |
| AGCTGCAGATGGAGATGACA+TGG | 0.642008 | 8.3:-18561421 | MS.gene011390:CDS |
| AGAAATTACAAATGGTGATG+CGG | 0.643384 | 8.3:-18561382 | MS.gene011390:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 8.3:+18561779 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 8.3:+18561781 | None:intergenic |
| TGGCGATGAAGATAAAGCAA+AGG | 0.665007 | 8.3:-18562645 | MS.gene011390:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 8.3:+18562502 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 8.3:+18562310 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 8.3:+18562503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr8.3:18562811-18562830 | MS.gene011390:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | - | chr8.3:18561842-18561861 | MS.gene011390:CDS | 15.0% |
| !!! | ATAAAAATGACTTTTTTCAA+TGG | - | chr8.3:18561787-18561806 | MS.gene011390:CDS | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | - | chr8.3:18561841-18561860 | MS.gene011390:CDS | 15.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | + | chr8.3:18562370-18562389 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr8.3:18563386-18563405 | None:intergenic | 20.0% |
| !! | GAAAAAGAAATCAAAAAAGA+AGG | - | chr8.3:18564391-18564410 | MS.gene011390:CDS | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr8.3:18562380-18562399 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr8.3:18563701-18563720 | None:intergenic | 20.0% |
| !! | TATAATTTATGTAGTGCATT+AGG | + | chr8.3:18564100-18564119 | None:intergenic | 20.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | - | chr8.3:18561475-18561494 | MS.gene011390:CDS | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr8.3:18561956-18561975 | MS.gene011390:intron | 20.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr8.3:18561492-18561511 | MS.gene011390:intron | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | - | chr8.3:18561476-18561495 | MS.gene011390:CDS | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | + | chr8.3:18562371-18562390 | None:intergenic | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr8.3:18562915-18562934 | MS.gene011390:intron | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr8.3:18562755-18562774 | MS.gene011390:CDS | 25.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | - | chr8.3:18561474-18561493 | MS.gene011390:CDS | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr8.3:18561498-18561517 | MS.gene011390:intron | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr8.3:18563569-18563588 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAAAAGATTATG+TGG | - | chr8.3:18561727-18561746 | MS.gene011390:intron | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr8.3:18561602-18561621 | MS.gene011390:intron | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr8.3:18563581-18563600 | MS.gene011390:intron | 25.0% |
| !! | ATTTTCTCATAGCATGAATT+TGG | - | chr8.3:18563941-18563960 | MS.gene011390:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | + | chr8.3:18561886-18561905 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | + | chr8.3:18561929-18561948 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | - | chr8.3:18562066-18562085 | MS.gene011390:CDS | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr8.3:18563380-18563399 | MS.gene011390:CDS | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | + | chr8.3:18561928-18561947 | None:intergenic | 25.0% |
| AAAGAAAGAGAAGAGAAAGT+TGG | - | chr8.3:18564301-18564320 | MS.gene011390:CDS | 30.0% | |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr8.3:18562140-18562159 | MS.gene011390:intron | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr8.3:18562408-18562427 | MS.gene011390:CDS | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr8.3:18562473-18562492 | MS.gene011390:CDS | 30.0% | |
| CATATAGCATCACCAAAAAA+TGG | + | chr8.3:18564016-18564035 | None:intergenic | 30.0% | |
| GACAAGTGACTGTTATTATT+GGG | - | chr8.3:18563471-18563490 | MS.gene011390:CDS | 30.0% | |
| GACTAACTTACCTAAAGTTA+AGG | - | chr8.3:18562136-18562155 | MS.gene011390:intron | 30.0% | |
| GAGTTTATTACCTTCAGAAA+CGG | + | chr8.3:18561426-18561445 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr8.3:18562148-18562167 | MS.gene011390:intron | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr8.3:18562930-18562949 | MS.gene011390:intron | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr8.3:18562795-18562814 | MS.gene011390:intron | 30.0% | |
| TGCATTTGAATTCAATAGCA+AGG | - | chr8.3:18562400-18562419 | MS.gene011390:CDS | 30.0% | |
| TTACTATACAGGAAACAAAC+CGG | + | chr8.3:18563690-18563709 | None:intergenic | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr8.3:18562149-18562168 | None:intergenic | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr8.3:18562877-18562896 | None:intergenic | 30.0% | |
| ! | AGAAATTACAAATGGTGATG+CGG | - | chr8.3:18564250-18564269 | MS.gene011390:CDS | 30.0% |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr8.3:18563823-18563842 | MS.gene011390:intron | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr8.3:18562010-18562029 | MS.gene011390:CDS | 30.0% |
| !! | CAACATTTTGACAAGTTTGT+TGG | - | chr8.3:18562284-18562303 | MS.gene011390:intron | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | - | chr8.3:18563883-18563902 | MS.gene011390:intron | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr8.3:18563668-18563687 | MS.gene011390:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | - | chr8.3:18563888-18563907 | MS.gene011390:intron | 30.0% |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr8.3:18561659-18561678 | MS.gene011390:intron | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr8.3:18562011-18562030 | MS.gene011390:CDS | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | - | chr8.3:18563887-18563906 | MS.gene011390:intron | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | - | chr8.3:18562069-18562088 | MS.gene011390:CDS | 30.0% |
| !!! | CATTTTTTGGTGATGCTATA+TGG | - | chr8.3:18564014-18564033 | MS.gene011390:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr8.3:18563520-18563539 | MS.gene011390:CDS | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | + | chr8.3:18561916-18561935 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr8.3:18563519-18563538 | MS.gene011390:CDS | 30.0% |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | - | chr8.3:18563416-18563435 | MS.gene011390:CDS | 30.0% |
| AACTGTTGCAGATACAGAAA+TGG | - | chr8.3:18564142-18564161 | MS.gene011390:intron | 35.0% | |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr8.3:18563327-18563346 | None:intergenic | 35.0% | |
| AAGGCTGCAGAAATTACAAA+TGG | - | chr8.3:18564242-18564261 | MS.gene011390:CDS | 35.0% | |
| AATTGAAGCCTTAACTGACT+TGG | - | chr8.3:18562963-18562982 | MS.gene011390:intron | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr8.3:18563326-18563345 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | + | chr8.3:18563856-18563875 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | - | chr8.3:18561919-18561938 | MS.gene011390:intron | 35.0% | |
| CATGCTATGAGAAAATGAGA+TGG | + | chr8.3:18563937-18563956 | None:intergenic | 35.0% | |
| CCAACAAGTAAAAACACAAG+AGG | + | chr8.3:18562337-18562356 | None:intergenic | 35.0% | |
| GGACAAGTGACTGTTATTAT+TGG | - | chr8.3:18563470-18563489 | MS.gene011390:CDS | 35.0% | |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr8.3:18562474-18562493 | MS.gene011390:CDS | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr8.3:18563154-18563173 | MS.gene011390:CDS | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr8.3:18563028-18563047 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr8.3:18563154-18563173 | None:intergenic | 35.0% | |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr8.3:18563099-18563118 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr8.3:18563326-18563345 | MS.gene011390:intron | 35.0% | |
| TGACATCAATGTTCTTACGA+GGG | + | chr8.3:18563855-18563874 | None:intergenic | 35.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr8.3:18561385-18561404 | None:intergenic | 35.0% | |
| TTTGATGTGCTTTGCTTGTT+TGG | - | chr8.3:18561987-18562006 | MS.gene011390:CDS | 35.0% | |
| ! | AGCTTTTTGCTTCTTCTTCT+TGG | + | chr8.3:18564195-18564214 | None:intergenic | 35.0% |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr8.3:18562311-18562330 | MS.gene011390:CDS | 35.0% |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | - | chr8.3:18563449-18563468 | MS.gene011390:CDS | 35.0% |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr8.3:18563822-18563841 | MS.gene011390:intron | 35.0% |
| ! | TAACATAGTAAGTGTTGCCT+GGG | + | chr8.3:18562747-18562766 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr8.3:18562836-18562855 | MS.gene011390:intron | 35.0% |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr8.3:18563095-18563114 | MS.gene011390:CDS | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | + | chr8.3:18562748-18562767 | None:intergenic | 35.0% |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | - | chr8.3:18562334-18562353 | MS.gene011390:CDS | 35.0% |
| !! | CTCTAAAATGAAAGGCTACT+AGG | + | chr8.3:18561878-18561897 | None:intergenic | 35.0% |
| !! | CTTCTTCTTCTTGGTTTTCT+TGG | + | chr8.3:18564186-18564205 | None:intergenic | 35.0% |
| !!! | TTTTTGGTGATGCTATATGG+TGG | - | chr8.3:18564017-18564036 | MS.gene011390:intron | 35.0% |
| AAGAAGCAAAAAGCTGCAGA+TGG | - | chr8.3:18564200-18564219 | MS.gene011390:intron | 40.0% | |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr8.3:18562164-18562183 | MS.gene011390:intron | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr8.3:18563292-18563311 | None:intergenic | 40.0% | |
| ACAGGTCAAAATGGGCAAAA+GGG | + | chr8.3:18562362-18562381 | None:intergenic | 40.0% | |
| ACCTATCTGATTACAGGAGA+AGG | - | chr8.3:18563177-18563196 | MS.gene011390:CDS | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr8.3:18563181-18563200 | None:intergenic | 40.0% | |
| AGAGAAGAGAAAGTTGGATC+AGG | - | chr8.3:18564307-18564326 | MS.gene011390:CDS | 40.0% | |
| AGAGGCAACACTCCTAAATA+TGG | - | chr8.3:18563554-18563573 | MS.gene011390:intron | 40.0% | |
| AGATGACATGGCTGTAGATA+AGG | - | chr8.3:18564223-18564242 | MS.gene011390:CDS | 40.0% | |
| ATTTCTGCCTGCTACTACAT+GGG | - | chr8.3:18563982-18564001 | MS.gene011390:intron | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr8.3:18563291-18563310 | None:intergenic | 40.0% | |
| CAGGATAAGGTTGTAGATGA+TGG | - | chr8.3:18564341-18564360 | MS.gene011390:CDS | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr8.3:18562528-18562547 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr8.3:18562525-18562544 | MS.gene011390:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr8.3:18563589-18563608 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr8.3:18561386-18561405 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr8.3:18563325-18563344 | None:intergenic | 40.0% | |
| GAATGACCATATTGTCAACC+CGG | + | chr8.3:18562495-18562514 | None:intergenic | 40.0% | |
| GACATCAATGTTCTTACGAG+GGG | + | chr8.3:18563854-18563873 | None:intergenic | 40.0% | |
| GCTATGAGAAAATGAGATGG+AGG | + | chr8.3:18563934-18563953 | None:intergenic | 40.0% | |
| GCTTAACAACTTTACCGAAG+CGG | + | chr8.3:18561349-18561368 | None:intergenic | 40.0% | |
| TACAGGTCAAAATGGGCAAA+AGG | + | chr8.3:18562363-18562382 | None:intergenic | 40.0% | |
| TGGCGATGAAGATAAAGCAA+AGG | - | chr8.3:18562987-18563006 | MS.gene011390:intron | 40.0% | |
| TTGGTGTGTTCTGCAGAAAA+GGG | - | chr8.3:18563757-18563776 | MS.gene011390:intron | 40.0% | |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr8.3:18562254-18562273 | MS.gene011390:intron | 40.0% | |
| ! | AATTACAAATGGTGATGCGG+AGG | - | chr8.3:18564253-18564272 | MS.gene011390:CDS | 40.0% |
| ! | ACAAACTCGTTACTTTGGAC+TGG | + | chr8.3:18562239-18562258 | None:intergenic | 40.0% |
| ! | AGTGGGAGATTGTGATTTGT+GGG | - | chr8.3:18562695-18562714 | MS.gene011390:CDS | 40.0% |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr8.3:18562414-18562433 | MS.gene011390:CDS | 40.0% |
| ! | TATTTCTGCCTGCTACTACA+TGG | - | chr8.3:18563981-18564000 | MS.gene011390:intron | 40.0% |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr8.3:18563171-18563190 | MS.gene011390:CDS | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr8.3:18562486-18562505 | MS.gene011390:CDS | 40.0% |
| ! | TTCAGGGCATTAAAAACGAG+AGG | - | chr8.3:18563536-18563555 | MS.gene011390:intron | 40.0% |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | - | chr8.3:18563756-18563775 | MS.gene011390:intron | 40.0% |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | - | chr8.3:18562295-18562314 | MS.gene011390:CDS | 40.0% |
| !! | GAAAAGGGTACTTCAGCATT+TGG | - | chr8.3:18563772-18563791 | MS.gene011390:intron | 40.0% |
| !! | TGGGGGTCTTTTCCATTTTT+TGG | - | chr8.3:18564001-18564020 | MS.gene011390:intron | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | - | chr8.3:18562299-18562318 | MS.gene011390:CDS | 40.0% |
| ATCGCCAACCAAGTCAGTTA+AGG | + | chr8.3:18562974-18562993 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr8.3:18562554-18562573 | MS.gene011390:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr8.3:18562114-18562133 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | - | chr8.3:18561413-18561432 | MS.gene011390:CDS | 45.0% | |
| CAACACACACACACAAACCA+GGG | - | chr8.3:18562672-18562691 | MS.gene011390:CDS | 45.0% | |
| CATAACCAAGAGCAGTTTCG+TGG | + | chr8.3:18561250-18561269 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr8.3:18563239-18563258 | MS.gene011390:intron | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr8.3:18563242-18563261 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr8.3:18562563-18562582 | MS.gene011390:intron | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr8.3:18562566-18562585 | None:intergenic | 45.0% | |
| CGCACACAAACTCGTTACTT+TGG | + | chr8.3:18562244-18562263 | None:intergenic | 45.0% | |
| CTTCTTGCTTGAATCAGCGT+TGG | + | chr8.3:18564369-18564388 | None:intergenic | 45.0% | |
| GAAAATGAGATGGAGGCAGT+AGG | + | chr8.3:18563927-18563946 | None:intergenic | 45.0% | |
| GAAGAGAAAGTTGGATCAGG+AGG | - | chr8.3:18564310-18564329 | MS.gene011390:CDS | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr8.3:18563132-18563151 | None:intergenic | 45.0% | |
| GAGTGGGAGATTGTGATTTG+TGG | - | chr8.3:18562694-18562713 | MS.gene011390:CDS | 45.0% | |
| GATTCCATGAGCTTCGAACA+AGG | + | chr8.3:18561273-18561292 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | - | chr8.3:18561281-18561300 | MS.gene011390:CDS | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr8.3:18563133-18563152 | None:intergenic | 45.0% | |
| GGAGGATGAAGTTCAGGATA+AGG | - | chr8.3:18564328-18564347 | MS.gene011390:CDS | 45.0% | |
| GTATTATGACCGATGAGCTG+AGG | - | chr8.3:18562102-18562121 | MS.gene011390:intron | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr8.3:18563025-18563044 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr8.3:18563134-18563153 | None:intergenic | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr8.3:18562845-18562864 | MS.gene011390:intron | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr8.3:18561393-18561412 | None:intergenic | 45.0% | |
| TTGCAAGATAGCGAGCCATT+CGG | + | chr8.3:18563631-18563650 | None:intergenic | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | + | chr8.3:18561339-18561358 | None:intergenic | 45.0% | |
| TTTCTGCCTGCTACTACATG+GGG | - | chr8.3:18563983-18564002 | MS.gene011390:intron | 45.0% | |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | + | chr8.3:18562673-18562692 | None:intergenic | 45.0% |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr8.3:18563738-18563757 | MS.gene011390:intron | 45.0% |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr8.3:18562185-18562204 | MS.gene011390:intron | 45.0% |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | - | chr8.3:18561266-18561285 | MS.gene011390:CDS | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr8.3:18563337-18563356 | MS.gene011390:intron | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | + | chr8.3:18562672-18562691 | None:intergenic | 45.0% |
| !! | GAAGCCTTAACTGACTTGGT+TGG | - | chr8.3:18562967-18562986 | MS.gene011390:intron | 45.0% |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr8.3:18562080-18562099 | MS.gene011390:CDS | 45.0% |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr8.3:18563251-18563270 | MS.gene011390:intron | 45.0% |
| !! | TTCACATCTGCTTTTGCGCA+TGG | - | chr8.3:18562638-18562657 | MS.gene011390:CDS | 45.0% |
| AAAGACCCCCATGTAGTAGC+AGG | + | chr8.3:18563992-18564011 | None:intergenic | 50.0% | |
| AATCACAATCTCCCACTCCC+TGG | + | chr8.3:18562692-18562711 | None:intergenic | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | - | chr8.3:18562678-18562697 | MS.gene011390:CDS | 50.0% | |
| AGCTGCAGATGGAGATGACA+TGG | - | chr8.3:18564211-18564230 | MS.gene011390:intron | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr8.3:18563115-18563134 | MS.gene011390:CDS | 50.0% | |
| ATGGAGGCAGTAGGTCTCAT+AGG | + | chr8.3:18563918-18563937 | None:intergenic | 50.0% | |
| CCAACACACACACACAAACC+AGG | - | chr8.3:18562671-18562690 | MS.gene011390:CDS | 50.0% | |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr8.3:18562453-18562472 | MS.gene011390:CDS | 50.0% | |
| CGAGCATCTGCCAGAAACAA+AGG | - | chr8.3:18563605-18563624 | MS.gene011390:intron | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | - | chr8.3:18561242-18561261 | MS.gene011390:CDS | 50.0% | |
| GCGAACTTATTCGTGGTGTC+AGG | - | chr8.3:18562261-18562280 | MS.gene011390:intron | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | - | chr8.3:18563275-18563294 | MS.gene011390:intron | 50.0% | |
| GGATCAGGAGGATGAAGTTC+AGG | - | chr8.3:18564322-18564341 | MS.gene011390:CDS | 50.0% | |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr8.3:18563732-18563751 | None:intergenic | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | - | chr8.3:18563613-18563632 | MS.gene011390:intron | 50.0% | |
| TGGAGGCAGTAGGTCTCATA+GGG | + | chr8.3:18563917-18563936 | None:intergenic | 50.0% | |
| TTCTGCCTGCTACTACATGG+GGG | - | chr8.3:18563984-18564003 | MS.gene011390:intron | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr8.3:18563618-18563637 | None:intergenic | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | + | chr8.3:18562674-18562693 | None:intergenic | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr8.3:18562112-18562131 | MS.gene011390:intron | 50.0% |
| ! | GATTTGGAGAAGGCACAGCT+TGG | - | chr8.3:18562424-18562443 | MS.gene011390:CDS | 50.0% |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr8.3:18563807-18563826 | None:intergenic | 50.0% |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | - | chr8.3:18562646-18562665 | MS.gene011390:CDS | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr8.3:18562456-18562475 | None:intergenic | 50.0% |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr8.3:18563348-18563367 | MS.gene011390:CDS | 50.0% |
| !! | GTTACCGATTTGAGCCGCTT+CGG | - | chr8.3:18561332-18561351 | MS.gene011390:CDS | 50.0% |
| CACACACACAAACCAGGGAG+TGG | - | chr8.3:18562677-18562696 | MS.gene011390:CDS | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | - | chr8.3:18562727-18562746 | MS.gene011390:CDS | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr8.3:18562727-18562746 | None:intergenic | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr8.3:18563017-18563036 | MS.gene011390:intron | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr8.3:18563018-18563037 | MS.gene011390:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18561230 | 18564424 | 18561230 | ID=MS.gene011390 |
| chr8.3 | mRNA | 18561230 | 18564424 | 18561230 | ID=MS.gene011390.t1;Parent=MS.gene011390 |
| chr8.3 | exon | 18564220 | 18564424 | 18564220 | ID=MS.gene011390.t1.exon1;Parent=MS.gene011390.t1 |
| chr8.3 | CDS | 18564220 | 18564424 | 18564220 | ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1 |
| chr8.3 | exon | 18563338 | 18563552 | 18563338 | ID=MS.gene011390.t1.exon2;Parent=MS.gene011390.t1 |
| chr8.3 | CDS | 18563338 | 18563552 | 18563338 | ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1 |
| chr8.3 | exon | 18563079 | 18563236 | 18563079 | ID=MS.gene011390.t1.exon3;Parent=MS.gene011390.t1 |
| chr8.3 | CDS | 18563079 | 18563236 | 18563079 | ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1 |
| chr8.3 | exon | 18562615 | 18562802 | 18562615 | ID=MS.gene011390.t1.exon4;Parent=MS.gene011390.t1 |
| chr8.3 | CDS | 18562615 | 18562802 | 18562615 | ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1 |
| chr8.3 | exon | 18562285 | 18562537 | 18562285 | ID=MS.gene011390.t1.exon5;Parent=MS.gene011390.t1 |
| chr8.3 | CDS | 18562285 | 18562537 | 18562285 | ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1 |
| chr8.3 | exon | 18561965 | 18562113 | 18561965 | ID=MS.gene011390.t1.exon6;Parent=MS.gene011390.t1 |
| chr8.3 | CDS | 18561965 | 18562113 | 18561965 | ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1 |
| chr8.3 | exon | 18561750 | 18561881 | 18561750 | ID=MS.gene011390.t1.exon7;Parent=MS.gene011390.t1 |
| chr8.3 | CDS | 18561750 | 18561881 | 18561750 | ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1 |
| chr8.3 | exon | 18561230 | 18561501 | 18561230 | ID=MS.gene011390.t1.exon8;Parent=MS.gene011390.t1 |
| chr8.3 | CDS | 18561230 | 18561501 | 18561230 | ID=cds.MS.gene011390.t1;Parent=MS.gene011390.t1 |
| Gene Sequence |
| Protein sequence |
