Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065463.t1 | XP_003608861.1 | 99.3 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 1.70E-239 | 838.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065463.t1 | O00567 | 59.4 | 431 | 171 | 1 | 3 | 433 | 4 | 430 | 1.6e-140 | 500.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065463.t1 | B7FLU4 | 99.3 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 1.3e-239 | 838.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065463.t1 | MTR_4g103790 | 99.306 | 432 | 3 | 0 | 1 | 432 | 1 | 432 | 0.0 | 891 |
| MS.gene065463.t1 | MTR_4g070910 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 1.55e-103 | 318 |
| MS.gene065463.t1 | MTR_5g010260 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 1.25e-102 | 317 |
| MS.gene065463.t1 | MTR_6g069570 | 75.385 | 65 | 15 | 1 | 345 | 408 | 125 | 189 | 2.88e-24 | 99.8 |
| MS.gene065463.t1 | MTR_7g037560 | 26.786 | 224 | 156 | 2 | 192 | 413 | 56 | 273 | 2.04e-18 | 87.4 |
| MS.gene065463.t1 | MTR_7g037560 | 27.027 | 222 | 154 | 2 | 192 | 411 | 117 | 332 | 3.19e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065463.t1 | AT1G56110 | 79.582 | 431 | 88 | 0 | 1 | 431 | 1 | 431 | 0.0 | 741 |
| MS.gene065463.t1 | AT3G12860 | 80.370 | 433 | 85 | 0 | 1 | 433 | 1 | 433 | 0.0 | 736 |
| MS.gene065463.t1 | AT3G05060 | 45.074 | 406 | 210 | 6 | 3 | 408 | 2 | 394 | 4.27e-111 | 337 |
| MS.gene065463.t1 | AT5G27120 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 3.39e-110 | 335 |
| MS.gene065463.t1 | AT5G27140 | 42.320 | 319 | 180 | 2 | 96 | 414 | 57 | 371 | 4.76e-77 | 247 |
| MS.gene065463.t1 | AT5G27140 | 42.006 | 319 | 179 | 3 | 96 | 414 | 57 | 369 | 1.39e-74 | 240 |
| MS.gene065463.t1 | AT1G60170 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 3.50e-15 | 77.8 |
Find 86 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 8.3:+18611441 | None:intergenic |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 8.3:-18611730 | MS.gene065463:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 8.3:+18611817 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 8.3:+18613672 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 8.3:+18612910 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 8.3:+18612182 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 8.3:-18612570 | MS.gene065463:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 8.3:-18612944 | MS.gene065463:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 8.3:-18612648 | MS.gene065463:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 8.3:-18611284 | MS.gene065463:CDS |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 8.3:-18611885 | MS.gene065463:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 8.3:+18611490 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 8.3:+18612031 | None:intergenic |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 8.3:-18611708 | MS.gene065463:intron |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 8.3:+18611905 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 8.3:-18612531 | MS.gene065463:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 8.3:-18612583 | MS.gene065463:CDS |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 8.3:+18612815 | None:intergenic |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 8.3:-18612211 | MS.gene065463:intron |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 8.3:-18613723 | MS.gene065463:CDS |
| ATCGCCAACCAAGTCAGTTA+AGG | 0.438260 | 8.3:+18612085 | None:intergenic |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 8.3:-18612141 | MS.gene065463:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 8.3:-18613774 | MS.gene065463:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 8.3:-18611173 | None:intergenic |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 8.3:+18613673 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 8.3:-18613813 | MS.gene065463:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 8.3:-18611502 | MS.gene065463:CDS |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 8.3:-18611817 | MS.gene065463:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 8.3:-18612039 | MS.gene065463:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 8.3:-18612502 | MS.gene065463:intron |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 8.3:-18612920 | MS.gene065463:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 8.3:-18612795 | MS.gene065463:CDS |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 8.3:-18612126 | MS.gene065463:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 8.3:+18613719 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 8.3:+18612820 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | 8.3:-18613789 | MS.gene065463:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 8.3:-18612892 | MS.gene065463:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 8.3:-18611719 | MS.gene065463:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 8.3:+18612034 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.503464 | 8.3:-18612093 | MS.gene065463:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 8.3:-18612908 | MS.gene065463:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 8.3:+18611732 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 8.3:-18613642 | MS.gene065463:intron |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 8.3:-18612761 | MS.gene065463:intron |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | 8.3:+18613808 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 8.3:+18613632 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 8.3:+18611428 | None:intergenic |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 8.3:+18612603 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 8.3:-18612603 | MS.gene065463:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 8.3:-18612038 | MS.gene065463:intron |
| GAAGCCTTAACTGACTTGGT+TGG | 0.554526 | 8.3:-18612089 | MS.gene065463:CDS |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 8.3:+18613665 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 8.3:+18611878 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 8.3:+18611252 | None:intergenic |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 8.3:-18612802 | MS.gene065463:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 8.3:-18611879 | MS.gene065463:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 8.3:+18611733 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 8.3:+18611925 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 8.3:-18612632 | MS.gene065463:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 8.3:+18612493 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 8.3:+18612945 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | 8.3:+18613785 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 8.3:+18611470 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 8.3:-18611443 | MS.gene065463:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 8.3:-18612642 | MS.gene065463:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 8.3:+18611768 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 8.3:-18611805 | MS.gene065463:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 8.3:-18612582 | MS.gene065463:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 8.3:-18612916 | MS.gene065463:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 8.3:-18611902 | MS.gene065463:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 8.3:-18611451 | MS.gene065463:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 8.3:+18612564 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 8.3:-18611941 | MS.gene065463:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 8.3:-18612871 | MS.gene065463:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 8.3:+18612531 | None:intergenic |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 8.3:+18613709 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 8.3:+18611204 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 8.3:+18611767 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 8.3:-18611781 | MS.gene065463:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 8.3:-18612954 | MS.gene065463:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 8.3:+18611203 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 8.3:+18611205 | None:intergenic |
| TGGCGATGAAGATAAAGCAA+AGG | 0.665007 | 8.3:-18612069 | MS.gene065463:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 8.3:+18611926 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 8.3:+18611734 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 8.3:+18611927 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr8.3:18612754-18612773 | MS.gene065463:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | - | chr8.3:18611785-18611804 | MS.gene065463:CDS | 15.0% |
| !!! | ATAAAAATGACTTTTTTCAA+TGG | - | chr8.3:18611730-18611749 | MS.gene065463:CDS | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | - | chr8.3:18611784-18611803 | MS.gene065463:CDS | 15.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | + | chr8.3:18612313-18612332 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr8.3:18613329-18613348 | None:intergenic | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr8.3:18612323-18612342 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr8.3:18613644-18613663 | None:intergenic | 20.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | - | chr8.3:18611419-18611438 | MS.gene065463:CDS | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr8.3:18611899-18611918 | MS.gene065463:CDS | 20.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr8.3:18611436-18611455 | MS.gene065463:CDS | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | - | chr8.3:18611420-18611439 | MS.gene065463:CDS | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | + | chr8.3:18612314-18612333 | None:intergenic | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr8.3:18612858-18612877 | MS.gene065463:CDS | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr8.3:18612698-18612717 | MS.gene065463:intron | 25.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | - | chr8.3:18611418-18611437 | MS.gene065463:CDS | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr8.3:18611442-18611461 | MS.gene065463:CDS | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr8.3:18613512-18613531 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAAAAGATTATG+TGG | - | chr8.3:18611670-18611689 | MS.gene065463:intron | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr8.3:18611545-18611564 | MS.gene065463:intron | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr8.3:18613524-18613543 | MS.gene065463:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | + | chr8.3:18611829-18611848 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | + | chr8.3:18611872-18611891 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | - | chr8.3:18612009-18612028 | MS.gene065463:intron | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr8.3:18613323-18613342 | MS.gene065463:intron | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | + | chr8.3:18611871-18611890 | None:intergenic | 25.0% |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr8.3:18612083-18612102 | MS.gene065463:CDS | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr8.3:18612351-18612370 | MS.gene065463:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr8.3:18612416-18612435 | MS.gene065463:intron | 30.0% | |
| GACAAGTGACTGTTATTATT+GGG | - | chr8.3:18613414-18613433 | MS.gene065463:intron | 30.0% | |
| GACTAACTTACCTAAAGTTA+AGG | - | chr8.3:18612079-18612098 | MS.gene065463:CDS | 30.0% | |
| GAGTTTATTACCTTCAGAAA+CGG | + | chr8.3:18611370-18611389 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr8.3:18612091-18612110 | MS.gene065463:CDS | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr8.3:18612873-18612892 | MS.gene065463:CDS | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr8.3:18612738-18612757 | MS.gene065463:intron | 30.0% | |
| TGCATTTGAATTCAATAGCA+AGG | - | chr8.3:18612343-18612362 | MS.gene065463:intron | 30.0% | |
| TTACTATACAGGAAACAAAC+CGG | + | chr8.3:18613633-18613652 | None:intergenic | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr8.3:18612092-18612111 | None:intergenic | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr8.3:18612820-18612839 | None:intergenic | 30.0% | |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr8.3:18613766-18613785 | MS.gene065463:CDS | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr8.3:18611953-18611972 | MS.gene065463:intron | 30.0% |
| !! | CAACATTTTGACAAGTTTGT+TGG | - | chr8.3:18612227-18612246 | MS.gene065463:intron | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr8.3:18613611-18613630 | MS.gene065463:intron | 30.0% |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr8.3:18611602-18611621 | MS.gene065463:intron | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr8.3:18611954-18611973 | MS.gene065463:intron | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | - | chr8.3:18612012-18612031 | MS.gene065463:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr8.3:18613463-18613482 | MS.gene065463:intron | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | + | chr8.3:18611859-18611878 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr8.3:18613462-18613481 | MS.gene065463:intron | 30.0% |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | - | chr8.3:18613359-18613378 | MS.gene065463:intron | 30.0% |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr8.3:18613270-18613289 | None:intergenic | 35.0% | |
| AATTGAAGCCTTAACTGACT+TGG | - | chr8.3:18612906-18612925 | MS.gene065463:CDS | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr8.3:18613269-18613288 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | + | chr8.3:18613799-18613818 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | - | chr8.3:18611862-18611881 | MS.gene065463:CDS | 35.0% | |
| CCAACAAGTAAAAACACAAG+AGG | + | chr8.3:18612280-18612299 | None:intergenic | 35.0% | |
| GGACAAGTGACTGTTATTAT+TGG | - | chr8.3:18613413-18613432 | MS.gene065463:intron | 35.0% | |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr8.3:18612417-18612436 | MS.gene065463:intron | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr8.3:18613097-18613116 | MS.gene065463:intron | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr8.3:18612971-18612990 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr8.3:18613097-18613116 | None:intergenic | 35.0% | |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr8.3:18613042-18613061 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr8.3:18613269-18613288 | MS.gene065463:intron | 35.0% | |
| TGACATCAATGTTCTTACGA+GGG | + | chr8.3:18613798-18613817 | None:intergenic | 35.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr8.3:18611329-18611348 | None:intergenic | 35.0% | |
| TTTGATGTGCTTTGCTTGTT+TGG | - | chr8.3:18611930-18611949 | MS.gene065463:CDS | 35.0% | |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr8.3:18612254-18612273 | MS.gene065463:intron | 35.0% |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | - | chr8.3:18613392-18613411 | MS.gene065463:intron | 35.0% |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr8.3:18613765-18613784 | MS.gene065463:CDS | 35.0% |
| ! | TAACATAGTAAGTGTTGCCT+GGG | + | chr8.3:18612690-18612709 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr8.3:18612779-18612798 | MS.gene065463:CDS | 35.0% |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr8.3:18613038-18613057 | MS.gene065463:intron | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | + | chr8.3:18612691-18612710 | None:intergenic | 35.0% |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | - | chr8.3:18612277-18612296 | MS.gene065463:intron | 35.0% |
| !! | CTCTAAAATGAAAGGCTACT+AGG | + | chr8.3:18611821-18611840 | None:intergenic | 35.0% |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr8.3:18612107-18612126 | MS.gene065463:CDS | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr8.3:18613235-18613254 | None:intergenic | 40.0% | |
| ACAGGTCAAAATGGGCAAAA+GGG | + | chr8.3:18612305-18612324 | None:intergenic | 40.0% | |
| ACCTATCTGATTACAGGAGA+AGG | - | chr8.3:18613120-18613139 | MS.gene065463:intron | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr8.3:18613124-18613143 | None:intergenic | 40.0% | |
| AGAGGCAACACTCCTAAATA+TGG | - | chr8.3:18613497-18613516 | MS.gene065463:intron | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr8.3:18613234-18613253 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr8.3:18612471-18612490 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr8.3:18612468-18612487 | MS.gene065463:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr8.3:18613532-18613551 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr8.3:18611330-18611349 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr8.3:18613268-18613287 | None:intergenic | 40.0% | |
| GAATGACCATATTGTCAACC+CGG | + | chr8.3:18612438-18612457 | None:intergenic | 40.0% | |
| GACATCAATGTTCTTACGAG+GGG | + | chr8.3:18613797-18613816 | None:intergenic | 40.0% | |
| GCTTAACAACTTTACCGAAG+CGG | + | chr8.3:18611293-18611312 | None:intergenic | 40.0% | |
| TACAGGTCAAAATGGGCAAA+AGG | + | chr8.3:18612306-18612325 | None:intergenic | 40.0% | |
| TGGCGATGAAGATAAAGCAA+AGG | - | chr8.3:18612930-18612949 | MS.gene065463:CDS | 40.0% | |
| TTGGTGTGTTCTGCAGAAAA+GGG | - | chr8.3:18613700-18613719 | MS.gene065463:CDS | 40.0% | |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr8.3:18612197-18612216 | MS.gene065463:CDS | 40.0% | |
| ! | ACAAACTCGTTACTTTGGAC+TGG | + | chr8.3:18612182-18612201 | None:intergenic | 40.0% |
| ! | AGTGGGAGATTGTGATTTGT+GGG | - | chr8.3:18612638-18612657 | MS.gene065463:CDS | 40.0% |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr8.3:18612357-18612376 | MS.gene065463:intron | 40.0% |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr8.3:18613114-18613133 | MS.gene065463:intron | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr8.3:18612429-18612448 | MS.gene065463:intron | 40.0% |
| ! | TTCAGGGCATTAAAAACGAG+AGG | - | chr8.3:18613479-18613498 | MS.gene065463:intron | 40.0% |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | - | chr8.3:18613699-18613718 | MS.gene065463:CDS | 40.0% |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | - | chr8.3:18612238-18612257 | MS.gene065463:intron | 40.0% |
| !! | GAAAAGGGTACTTCAGCATT+TGG | - | chr8.3:18613715-18613734 | MS.gene065463:CDS | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | - | chr8.3:18612242-18612261 | MS.gene065463:intron | 40.0% |
| ATCGCCAACCAAGTCAGTTA+AGG | + | chr8.3:18612917-18612936 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr8.3:18612497-18612516 | MS.gene065463:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr8.3:18612057-18612076 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | - | chr8.3:18611357-18611376 | MS.gene065463:intron | 45.0% | |
| CAACACACACACACAAACCA+GGG | - | chr8.3:18612615-18612634 | MS.gene065463:CDS | 45.0% | |
| CATAACCAAGAGCAGTTTCG+TGG | + | chr8.3:18611194-18611213 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr8.3:18613182-18613201 | MS.gene065463:intron | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr8.3:18613185-18613204 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr8.3:18612506-18612525 | MS.gene065463:CDS | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr8.3:18612509-18612528 | None:intergenic | 45.0% | |
| CGCACACAAACTCGTTACTT+TGG | + | chr8.3:18612187-18612206 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr8.3:18613075-18613094 | None:intergenic | 45.0% | |
| GAGTGGGAGATTGTGATTTG+TGG | - | chr8.3:18612637-18612656 | MS.gene065463:CDS | 45.0% | |
| GATTCCATGAGCTTCGAACA+AGG | + | chr8.3:18611217-18611236 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | - | chr8.3:18611225-18611244 | MS.gene065463:CDS | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr8.3:18613076-18613095 | None:intergenic | 45.0% | |
| GTATTATGACCGATGAGCTG+AGG | - | chr8.3:18612045-18612064 | MS.gene065463:CDS | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr8.3:18612968-18612987 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr8.3:18613077-18613096 | None:intergenic | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr8.3:18612788-18612807 | MS.gene065463:CDS | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr8.3:18611337-18611356 | None:intergenic | 45.0% | |
| TTGCAAGATAGCGAGCCATT+CGG | + | chr8.3:18613574-18613593 | None:intergenic | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | + | chr8.3:18611283-18611302 | None:intergenic | 45.0% | |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | + | chr8.3:18612616-18612635 | None:intergenic | 45.0% |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr8.3:18613681-18613700 | MS.gene065463:CDS | 45.0% |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr8.3:18612128-18612147 | MS.gene065463:CDS | 45.0% |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | - | chr8.3:18611210-18611229 | MS.gene065463:CDS | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr8.3:18613280-18613299 | MS.gene065463:intron | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | + | chr8.3:18612615-18612634 | None:intergenic | 45.0% |
| !! | GAAGCCTTAACTGACTTGGT+TGG | - | chr8.3:18612910-18612929 | MS.gene065463:CDS | 45.0% |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr8.3:18612023-18612042 | MS.gene065463:intron | 45.0% |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr8.3:18613194-18613213 | MS.gene065463:intron | 45.0% |
| !! | TTCACATCTGCTTTTGCGCA+TGG | - | chr8.3:18612581-18612600 | MS.gene065463:CDS | 45.0% |
| AATCACAATCTCCCACTCCC+TGG | + | chr8.3:18612635-18612654 | None:intergenic | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | - | chr8.3:18612621-18612640 | MS.gene065463:CDS | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr8.3:18613058-18613077 | MS.gene065463:intron | 50.0% | |
| CCAACACACACACACAAACC+AGG | - | chr8.3:18612614-18612633 | MS.gene065463:CDS | 50.0% | |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr8.3:18612396-18612415 | MS.gene065463:intron | 50.0% | |
| CGAGCATCTGCCAGAAACAA+AGG | - | chr8.3:18613548-18613567 | MS.gene065463:intron | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | - | chr8.3:18611186-18611205 | MS.gene065463:CDS | 50.0% | |
| GCGAACTTATTCGTGGTGTC+AGG | - | chr8.3:18612204-18612223 | MS.gene065463:CDS | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | - | chr8.3:18613218-18613237 | MS.gene065463:intron | 50.0% | |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr8.3:18613675-18613694 | None:intergenic | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | - | chr8.3:18613556-18613575 | MS.gene065463:intron | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr8.3:18613561-18613580 | None:intergenic | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | + | chr8.3:18612617-18612636 | None:intergenic | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr8.3:18612055-18612074 | MS.gene065463:CDS | 50.0% |
| ! | GATTTGGAGAAGGCACAGCT+TGG | - | chr8.3:18612367-18612386 | MS.gene065463:intron | 50.0% |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr8.3:18613750-18613769 | None:intergenic | 50.0% |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | - | chr8.3:18612589-18612608 | MS.gene065463:CDS | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr8.3:18612399-18612418 | None:intergenic | 50.0% |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr8.3:18613291-18613310 | MS.gene065463:intron | 50.0% |
| !! | GTTACCGATTTGAGCCGCTT+CGG | - | chr8.3:18611276-18611295 | MS.gene065463:CDS | 50.0% |
| CACACACACAAACCAGGGAG+TGG | - | chr8.3:18612620-18612639 | MS.gene065463:CDS | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | - | chr8.3:18612670-18612689 | MS.gene065463:intron | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr8.3:18612670-18612689 | None:intergenic | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr8.3:18612960-18612979 | MS.gene065463:intron | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr8.3:18612961-18612980 | MS.gene065463:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18611174 | 18613847 | 18611174 | ID=MS.gene065463 |
| chr8.3 | mRNA | 18611174 | 18613847 | 18611174 | ID=MS.gene065463.t1;Parent=MS.gene065463 |
| chr8.3 | exon | 18613643 | 18613847 | 18613643 | ID=MS.gene065463.t1.exon1;Parent=MS.gene065463.t1 |
| chr8.3 | CDS | 18613643 | 18613847 | 18613643 | ID=cds.MS.gene065463.t1;Parent=MS.gene065463.t1 |
| chr8.3 | exon | 18612762 | 18612976 | 18612762 | ID=MS.gene065463.t1.exon2;Parent=MS.gene065463.t1 |
| chr8.3 | CDS | 18612762 | 18612976 | 18612762 | ID=cds.MS.gene065463.t1;Parent=MS.gene065463.t1 |
| chr8.3 | exon | 18612503 | 18612660 | 18612503 | ID=MS.gene065463.t1.exon3;Parent=MS.gene065463.t1 |
| chr8.3 | CDS | 18612503 | 18612660 | 18612503 | ID=cds.MS.gene065463.t1;Parent=MS.gene065463.t1 |
| chr8.3 | exon | 18612039 | 18612226 | 18612039 | ID=MS.gene065463.t1.exon4;Parent=MS.gene065463.t1 |
| chr8.3 | CDS | 18612039 | 18612226 | 18612039 | ID=cds.MS.gene065463.t1;Parent=MS.gene065463.t1 |
| chr8.3 | exon | 18611709 | 18611961 | 18611709 | ID=MS.gene065463.t1.exon5;Parent=MS.gene065463.t1 |
| chr8.3 | CDS | 18611709 | 18611961 | 18611709 | ID=cds.MS.gene065463.t1;Parent=MS.gene065463.t1 |
| chr8.3 | exon | 18611389 | 18611537 | 18611389 | ID=MS.gene065463.t1.exon6;Parent=MS.gene065463.t1 |
| chr8.3 | CDS | 18611389 | 18611537 | 18611389 | ID=cds.MS.gene065463.t1;Parent=MS.gene065463.t1 |
| chr8.3 | exon | 18611174 | 18611305 | 18611174 | ID=MS.gene065463.t1.exon7;Parent=MS.gene065463.t1 |
| chr8.3 | CDS | 18611174 | 18611305 | 18611174 | ID=cds.MS.gene065463.t1;Parent=MS.gene065463.t1 |
| Gene Sequence |
| Protein sequence |
