Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057157.t1 | XP_003608861.1 | 99.1 | 442 | 3 | 1 | 1 | 441 | 1 | 442 | 7.00E-243 | 849.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057157.t1 | O00567 | 59.4 | 431 | 171 | 1 | 3 | 433 | 4 | 430 | 3.3e-140 | 500.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057157.t1 | B7FLU4 | 99.1 | 442 | 3 | 1 | 1 | 441 | 1 | 442 | 5.0e-243 | 849.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057157 | MS.gene069339 | 0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene057157 | MS.gene50744 | 0.805634 | 1.21E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057157.t1 | MTR_4g103790 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1051 |
| MS.gene057157.t1 | MTR_4g070910 | 42.998 | 407 | 217 | 4 | 3 | 408 | 1 | 393 | 1.25e-102 | 319 |
| MS.gene057157.t1 | MTR_5g010260 | 42.647 | 408 | 217 | 5 | 3 | 408 | 1 | 393 | 5.66e-102 | 318 |
| MS.gene057157.t1 | MTR_6g069570 | 76.923 | 65 | 14 | 1 | 345 | 408 | 125 | 189 | 7.63e-25 | 102 |
| MS.gene057157.t1 | MTR_7g037560 | 27.273 | 220 | 152 | 2 | 192 | 409 | 117 | 330 | 2.47e-18 | 88.2 |
| MS.gene057157.t1 | MTR_7g037560 | 27.027 | 222 | 154 | 2 | 192 | 411 | 56 | 271 | 2.90e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057157.t1 | AT1G56110 | 79.128 | 436 | 91 | 0 | 1 | 436 | 1 | 436 | 0.0 | 749 |
| MS.gene057157.t1 | AT3G12860 | 80.137 | 438 | 87 | 0 | 1 | 438 | 1 | 438 | 0.0 | 744 |
| MS.gene057157.t1 | AT3G05060 | 43.349 | 436 | 233 | 7 | 3 | 437 | 2 | 424 | 1.32e-109 | 337 |
| MS.gene057157.t1 | AT5G27120 | 45.074 | 406 | 210 | 6 | 3 | 408 | 1 | 393 | 4.70e-109 | 335 |
| MS.gene057157.t1 | AT5G27140 | 40.385 | 364 | 205 | 4 | 96 | 456 | 57 | 411 | 2.50e-78 | 253 |
| MS.gene057157.t1 | AT5G27140 | 40.110 | 364 | 204 | 5 | 96 | 456 | 57 | 409 | 4.29e-76 | 247 |
| MS.gene057157.t1 | AT1G60170 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 2.87e-15 | 79.0 |
Find 99 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 8.1:+20605054 | None:intergenic |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 8.1:-20605343 | MS.gene057157:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 8.1:+20605430 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 8.1:+20607322 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 8.1:+20606535 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 8.1:+20605795 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 8.1:-20606195 | MS.gene057157:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 8.1:-20606569 | MS.gene057157:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 8.1:-20606273 | MS.gene057157:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 8.1:-20604897 | MS.gene057157:CDS |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 8.1:-20605498 | MS.gene057157:CDS |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 8.1:+20605644 | None:intergenic |
| AAAGAAAGAGAAGAGAAAGT+TGG | 0.395833 | 8.1:-20604366 | MS.gene057157:CDS |
| GGATCAGGAGGATGAAGTTC+AGG | 0.398273 | 8.1:-20604345 | MS.gene057157:CDS |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 8.1:-20605321 | MS.gene057157:intron |
| TGGAATATAAGACCATATTT+AGG | 0.405218 | 8.1:+20605103 | None:intergenic |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 8.1:+20605518 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 8.1:-20606156 | MS.gene057157:CDS |
| AGAGGAAACACGCCTAAATA+TGG | 0.408643 | 8.1:-20605115 | MS.gene057157:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 8.1:-20606208 | MS.gene057157:CDS |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 8.1:+20606440 | None:intergenic |
| AGAGAAGAGAAAGTTGGATC+AGG | 0.424350 | 8.1:-20604360 | MS.gene057157:CDS |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 8.1:-20605824 | MS.gene057157:intron |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 8.1:-20607373 | MS.gene057157:CDS |
| AACTGTTGCAGATACAGAAA+TGG | 0.437507 | 8.1:-20604525 | MS.gene057157:intron |
| ATCGCCAACCAAGTCAGTTA+AGG | 0.438260 | 8.1:+20605698 | None:intergenic |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 8.1:-20605754 | MS.gene057157:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 8.1:-20607424 | MS.gene057157:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 8.1:-20604786 | MS.gene057157:intron |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 8.1:+20607323 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 8.1:-20607463 | MS.gene057157:CDS |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 8.1:-20605430 | MS.gene057157:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 8.1:-20605652 | MS.gene057157:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 8.1:-20606127 | MS.gene057157:intron |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 8.1:-20606545 | MS.gene057157:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 8.1:-20606420 | MS.gene057157:CDS |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 8.1:-20605739 | MS.gene057157:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 8.1:+20607369 | None:intergenic |
| GGAGGATGAAGTTCAGGATA+AGG | 0.480853 | 8.1:-20604339 | MS.gene057157:CDS |
| TATACCTTGTTCGAAGCTCA+TGG | 0.481495 | 8.1:-20607439 | MS.gene057157:CDS |
| CTTCTTGCTTGAATCAGCGT+TGG | 0.485532 | 8.1:+20604301 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 8.1:+20606445 | None:intergenic |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 8.1:-20606517 | MS.gene057157:CDS |
| GAAGAGAAAGTTGGATCAGG+AGG | 0.491231 | 8.1:-20604357 | MS.gene057157:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 8.1:-20605332 | MS.gene057157:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 8.1:+20605647 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.503464 | 8.1:-20605706 | MS.gene057157:CDS |
| CAAATCAACGCCGTCTCTGA+AGG | 0.503630 | 8.1:-20607292 | MS.gene057157:intron |
| CAGGATAAGGTTGTAGATGA+TGG | 0.505235 | 8.1:-20604326 | MS.gene057157:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 8.1:-20606533 | MS.gene057157:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 8.1:+20605345 | None:intergenic |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 8.1:-20606386 | MS.gene057157:intron |
| TATAACCAAGAGCAGTTTCG+TGG | 0.529381 | 8.1:+20607458 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 8.1:+20605041 | None:intergenic |
| AAGGCTGCAGAAATTACAAA+TGG | 0.539269 | 8.1:-20604425 | MS.gene057157:CDS |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 8.1:+20606228 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 8.1:-20606228 | MS.gene057157:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 8.1:-20605651 | MS.gene057157:intron |
| GAAGCCTTAACTGACTTGGT+TGG | 0.554526 | 8.1:-20605702 | MS.gene057157:CDS |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 8.1:+20607315 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 8.1:+20605491 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 8.1:+20604865 | None:intergenic |
| AGATGACATGGCTGTAGATA+AGG | 0.568881 | 8.1:-20604444 | MS.gene057157:CDS |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 8.1:-20606427 | MS.gene057157:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 8.1:-20605492 | MS.gene057157:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 8.1:+20605346 | None:intergenic |
| TGACATCAATGTTCTTACGC+GGG | 0.578144 | 8.1:+20604817 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 8.1:+20605538 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 8.1:-20606257 | MS.gene057157:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 8.1:+20606118 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 8.1:+20606570 | None:intergenic |
| GAGTTTATTACCTTCAGAGA+CGG | 0.585993 | 8.1:+20607282 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 8.1:+20605083 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 8.1:-20605056 | MS.gene057157:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 8.1:-20606267 | MS.gene057157:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 8.1:+20605381 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 8.1:-20605418 | MS.gene057157:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 8.1:-20606207 | MS.gene057157:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 8.1:-20606541 | MS.gene057157:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 8.1:-20605515 | MS.gene057157:CDS |
| GATTCCATGAGCTTCGAACA+AGG | 0.606054 | 8.1:+20607435 | None:intergenic |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 8.1:-20605064 | MS.gene057157:CDS |
| GCTCGCTTGATATCCCATGC+TGG | 0.607895 | 8.1:-20605394 | MS.gene057157:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 8.1:+20606189 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 8.1:-20605554 | MS.gene057157:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 8.1:-20606496 | MS.gene057157:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 8.1:+20606156 | None:intergenic |
| AATTACAAATGGTGATGCGG+AGG | 0.625035 | 8.1:-20604414 | MS.gene057157:CDS |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 8.1:+20607359 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 8.1:+20605380 | None:intergenic |
| ATGACATCAATGTTCTTACG+CGG | 0.635534 | 8.1:+20604816 | None:intergenic |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 8.1:-20606579 | MS.gene057157:CDS |
| AGCTGCAGATGGAGATGACA+TGG | 0.642008 | 8.1:-20604456 | MS.gene057157:CDS |
| AGAAATTACAAATGGTGATG+CGG | 0.643384 | 8.1:-20604417 | MS.gene057157:CDS |
| GACATCAATGTTCTTACGCG+GGG | 0.661983 | 8.1:+20604818 | None:intergenic |
| TGGCGATGAAGATAAAGCAA+AGG | 0.665007 | 8.1:-20605682 | MS.gene057157:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 8.1:+20605539 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 8.1:+20605347 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 8.1:+20605540 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATAACTTTTTTCAA+TGG | - | chr8.1:20604836-20604855 | MS.gene057157:CDS | 10.0% |
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr8.1:20605882-20605901 | MS.gene057157:intron | 15.0% |
| !!! | TTTTGAAGAAATATAGATTT+GGG | - | chr8.1:20604891-20604910 | MS.gene057157:CDS | 15.0% |
| !!! | TTTTTGAAGAAATATAGATT+TGG | - | chr8.1:20604890-20604909 | MS.gene057157:CDS | 15.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr8.1:20606457-20606476 | None:intergenic | 20.0% |
| !! | GAAAAAGAAATCAAAAAAGA+AGG | - | chr8.1:20607464-20607483 | MS.gene057157:CDS | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr8.1:20605439-20605458 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr8.1:20606772-20606791 | None:intergenic | 20.0% |
| !! | TATAATTTATGTAGTGCATT+AGG | + | chr8.1:20607173-20607192 | None:intergenic | 20.0% |
| !! | TATGAATCTGTTATGTTATA+GGG | - | chr8.1:20604510-20604529 | MS.gene057157:CDS | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr8.1:20605016-20605035 | MS.gene057157:CDS | 20.0% |
| !!! | TCATTTTTTAGTGTTTGTTT+AGG | + | chr8.1:20604973-20604992 | None:intergenic | 20.0% |
| !!! | TTTAAGTTGTTTTTGTTTGT+TGG | - | chr8.1:20605125-20605144 | MS.gene057157:CDS | 20.0% |
| ! | AAAAAAATACAGGTCAAAAC+GGG | + | chr8.1:20605429-20605448 | None:intergenic | 25.0% |
| ! | AGATTATGTGGTAAAAATTC+TGG | - | chr8.1:20604772-20604791 | MS.gene057157:intron | 25.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr8.1:20604527-20604546 | MS.gene057157:intron | 25.0% |
| ! | ATGAATCTGTTATGTTATAG+GGG | - | chr8.1:20604511-20604530 | MS.gene057157:CDS | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+CGG | + | chr8.1:20605430-20605449 | None:intergenic | 25.0% |
| ! | CAAACACTAAAAAATGACAA+AGG | - | chr8.1:20604976-20604995 | MS.gene057157:intron | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr8.1:20605986-20606005 | MS.gene057157:intron | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr8.1:20605826-20605845 | MS.gene057157:intron | 25.0% |
| ! | GTATGAATCTGTTATGTTAT+AGG | - | chr8.1:20604509-20604528 | MS.gene057157:CDS | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr8.1:20604533-20604552 | MS.gene057157:intron | 25.0% |
| ! | TCAGCTAAAAAAAGATTATG+TGG | - | chr8.1:20604760-20604779 | MS.gene057157:intron | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr8.1:20606640-20606659 | None:intergenic | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr8.1:20604637-20604656 | MS.gene057157:intron | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr8.1:20606652-20606671 | MS.gene057157:intron | 25.0% |
| !! | TTTCCCAAATCTAAAATGAA+AGG | + | chr8.1:20604935-20604954 | None:intergenic | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr8.1:20606451-20606470 | MS.gene057157:CDS | 25.0% |
| AAAGAAAGAGAAGAGAAAGT+TGG | - | chr8.1:20607374-20607393 | MS.gene057157:CDS | 30.0% | |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr8.1:20605199-20605218 | MS.gene057157:intron | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr8.1:20605467-20605486 | MS.gene057157:CDS | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr8.1:20605532-20605551 | MS.gene057157:CDS | 30.0% | |
| CATATAGCATCACCAAAAAA+TGG | + | chr8.1:20607089-20607108 | None:intergenic | 30.0% | |
| GACAAGTGACTGTTATTATT+GGG | - | chr8.1:20606542-20606561 | MS.gene057157:CDS | 30.0% | |
| GACTAACTTACCTAAAGTTA+AGG | - | chr8.1:20605195-20605214 | MS.gene057157:intron | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr8.1:20605207-20605226 | MS.gene057157:intron | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr8.1:20606001-20606020 | MS.gene057157:intron | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr8.1:20605866-20605885 | MS.gene057157:intron | 30.0% | |
| TGCATTTGAATTCAATAGCA+AGG | - | chr8.1:20605459-20605478 | MS.gene057157:CDS | 30.0% | |
| TTACTATACAGGAAACAAAC+CGG | + | chr8.1:20606761-20606780 | None:intergenic | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr8.1:20605208-20605227 | None:intergenic | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr8.1:20605948-20605967 | None:intergenic | 30.0% | |
| ! | ACAGCCTTTCATTTTAGATT+TGG | - | chr8.1:20604928-20604947 | MS.gene057157:intron | 30.0% |
| ! | AGAAATTACAAATGGTGATG+CGG | - | chr8.1:20607323-20607342 | MS.gene057157:CDS | 30.0% |
| ! | ATCTAAAATGAAAGGCTGTT+AGG | + | chr8.1:20604927-20604946 | None:intergenic | 30.0% |
| ! | ATTTTCTCATGGCATGAATT+TGG | - | chr8.1:20607012-20607031 | MS.gene057157:intron | 30.0% |
| ! | CAGCCTTTCATTTTAGATTT+GGG | - | chr8.1:20604929-20604948 | MS.gene057157:intron | 30.0% |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr8.1:20606894-20606913 | MS.gene057157:intron | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr8.1:20605070-20605089 | MS.gene057157:CDS | 30.0% |
| ! | TTTTTATCATAGAAACGAGC+AGG | - | chr8.1:20606487-20606506 | MS.gene057157:CDS | 30.0% |
| !! | CAACATTTTGACAAGTTTGT+TGG | - | chr8.1:20605343-20605362 | MS.gene057157:CDS | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | - | chr8.1:20606954-20606973 | MS.gene057157:intron | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr8.1:20606739-20606758 | MS.gene057157:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | - | chr8.1:20606959-20606978 | MS.gene057157:intron | 30.0% |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr8.1:20604691-20604710 | MS.gene057157:intron | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr8.1:20605071-20605090 | MS.gene057157:CDS | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | - | chr8.1:20606958-20606977 | MS.gene057157:intron | 30.0% |
| !! | TTTGATGTGCTTTGTTTGTT+TGG | - | chr8.1:20605047-20605066 | MS.gene057157:CDS | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | - | chr8.1:20605128-20605147 | MS.gene057157:CDS | 30.0% |
| !!! | CATTTTTTGGTGATGCTATA+TGG | - | chr8.1:20607087-20607106 | MS.gene057157:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr8.1:20606591-20606610 | MS.gene057157:intron | 30.0% |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr8.1:20606590-20606609 | MS.gene057157:intron | 30.0% |
| AACTGTTGCAGATACAGAAA+TGG | - | chr8.1:20607215-20607234 | MS.gene057157:intron | 35.0% | |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr8.1:20606398-20606417 | None:intergenic | 35.0% | |
| AAGGCTGCAGAAATTACAAA+TGG | - | chr8.1:20607315-20607334 | MS.gene057157:CDS | 35.0% | |
| AATTGAAGCCTTAACTGACT+TGG | - | chr8.1:20606034-20606053 | MS.gene057157:intron | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr8.1:20606397-20606416 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+CGG | + | chr8.1:20606927-20606946 | None:intergenic | 35.0% | |
| CCTACAAGTAAAAACACAAG+AGG | + | chr8.1:20605396-20605415 | None:intergenic | 35.0% | |
| GAGTTTATTACCTTCAGAGA+CGG | + | chr8.1:20604461-20604480 | None:intergenic | 35.0% | |
| GGACAAGTGACTGTTATTAT+TGG | - | chr8.1:20606541-20606560 | MS.gene057157:CDS | 35.0% | |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr8.1:20605533-20605552 | MS.gene057157:CDS | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr8.1:20606225-20606244 | MS.gene057157:CDS | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr8.1:20606099-20606118 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr8.1:20606225-20606244 | None:intergenic | 35.0% | |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr8.1:20606170-20606189 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr8.1:20606397-20606416 | MS.gene057157:CDS | 35.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr8.1:20604420-20604439 | None:intergenic | 35.0% | |
| ! | AGCTTTTTGCTTCTTCTTCT+TGG | + | chr8.1:20607268-20607287 | None:intergenic | 35.0% |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr8.1:20605370-20605389 | MS.gene057157:CDS | 35.0% |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | - | chr8.1:20606520-20606539 | MS.gene057157:CDS | 35.0% |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr8.1:20606893-20606912 | MS.gene057157:intron | 35.0% |
| ! | GTTAACATAGTAAGTGTTGC+CGG | + | chr8.1:20605820-20605839 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr8.1:20605907-20605926 | MS.gene057157:intron | 35.0% |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr8.1:20606166-20606185 | MS.gene057157:CDS | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+GGG | + | chr8.1:20605819-20605838 | None:intergenic | 35.0% |
| ! | TTCAGGGCATTAAAAACAAG+AGG | - | chr8.1:20606607-20606626 | MS.gene057157:intron | 35.0% |
| !! | CCTCTTGTGTTTTTACTTGT+AGG | - | chr8.1:20605393-20605412 | MS.gene057157:CDS | 35.0% |
| !! | CTTCTTCTTCTTGGTTTTCT+TGG | + | chr8.1:20607259-20607278 | None:intergenic | 35.0% |
| !!! | TTTTTGGTGATGCTATATGG+TGG | - | chr8.1:20607090-20607109 | MS.gene057157:intron | 35.0% |
| AAGAAGCAAAAAGCTGCAGA+TGG | - | chr8.1:20607273-20607292 | MS.gene057157:intron | 40.0% | |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr8.1:20605223-20605242 | MS.gene057157:intron | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr8.1:20606363-20606382 | None:intergenic | 40.0% | |
| ACCTATCTGATTACAGGAGA+AGG | - | chr8.1:20606248-20606267 | MS.gene057157:CDS | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr8.1:20606252-20606271 | None:intergenic | 40.0% | |
| AGAGAAGAGAAAGTTGGATC+AGG | - | chr8.1:20607380-20607399 | MS.gene057157:CDS | 40.0% | |
| AGAGGAAACACGCCTAAATA+TGG | - | chr8.1:20606625-20606644 | MS.gene057157:intron | 40.0% | |
| AGATGACATGGCTGTAGATA+AGG | - | chr8.1:20607296-20607315 | MS.gene057157:CDS | 40.0% | |
| ATTTCTGCCTGCTACTACAT+GGG | - | chr8.1:20607055-20607074 | MS.gene057157:intron | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr8.1:20606362-20606381 | None:intergenic | 40.0% | |
| CAGGATAAGGTTGTAGATGA+TGG | - | chr8.1:20607414-20607433 | MS.gene057157:CDS | 40.0% | |
| CATGCCATGAGAAAATGAGA+TGG | + | chr8.1:20607008-20607027 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr8.1:20605587-20605606 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr8.1:20605584-20605603 | MS.gene057157:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr8.1:20606660-20606679 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr8.1:20604421-20604440 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr8.1:20606396-20606415 | None:intergenic | 40.0% | |
| GAATGACCATATTGTCAACC+CGG | + | chr8.1:20605554-20605573 | None:intergenic | 40.0% | |
| GCTTAACAACTTTACCGAAG+CGG | + | chr8.1:20604384-20604403 | None:intergenic | 40.0% | |
| TATAACCAAGAGCAGTTTCG+TGG | + | chr8.1:20604285-20604304 | None:intergenic | 40.0% | |
| TATACCTTGTTCGAAGCTCA+TGG | - | chr8.1:20604301-20604320 | MS.gene057157:CDS | 40.0% | |
| TGACATCAATGTTCTTACGC+GGG | + | chr8.1:20606926-20606945 | None:intergenic | 40.0% | |
| TGGCGATGAAGATAAAGCAA+AGG | - | chr8.1:20606058-20606077 | MS.gene057157:intron | 40.0% | |
| TTGGTGTGTTCTGCAGAAAA+GGG | - | chr8.1:20606828-20606847 | MS.gene057157:intron | 40.0% | |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr8.1:20605313-20605332 | MS.gene057157:intron | 40.0% | |
| ! | AATTACAAATGGTGATGCGG+AGG | - | chr8.1:20607326-20607345 | MS.gene057157:CDS | 40.0% |
| ! | ACAAACTCGTTACTTTGGAC+TGG | + | chr8.1:20605298-20605317 | None:intergenic | 40.0% |
| ! | AGTGGGAGATTGTGATTTGT+GGG | - | chr8.1:20605766-20605785 | MS.gene057157:CDS | 40.0% |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr8.1:20605473-20605492 | MS.gene057157:CDS | 40.0% |
| ! | TAACATAGTAAGTGTTGCCG+GGG | + | chr8.1:20605818-20605837 | None:intergenic | 40.0% |
| ! | TATTTCTGCCTGCTACTACA+TGG | - | chr8.1:20607054-20607073 | MS.gene057157:intron | 40.0% |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr8.1:20606242-20606261 | MS.gene057157:CDS | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr8.1:20605545-20605564 | MS.gene057157:CDS | 40.0% |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | - | chr8.1:20606827-20606846 | MS.gene057157:intron | 40.0% |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | - | chr8.1:20605354-20605373 | MS.gene057157:CDS | 40.0% |
| !! | GAAAAGGGTACTTCAGCATT+TGG | - | chr8.1:20606843-20606862 | MS.gene057157:intron | 40.0% |
| !! | TGGGGGTCTTTTCCATTTTT+TGG | - | chr8.1:20607074-20607093 | MS.gene057157:intron | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | - | chr8.1:20605358-20605377 | MS.gene057157:CDS | 40.0% |
| ATACAGGTCAAAACGGGCAA+AGG | + | chr8.1:20605423-20605442 | None:intergenic | 45.0% | |
| ATCGCCAACCAAGTCAGTTA+AGG | + | chr8.1:20606045-20606064 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr8.1:20605613-20605632 | MS.gene057157:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr8.1:20605173-20605192 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr8.1:20606310-20606329 | MS.gene057157:intron | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr8.1:20606313-20606332 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr8.1:20605622-20605641 | MS.gene057157:intron | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr8.1:20605625-20605644 | None:intergenic | 45.0% | |
| CGCACACAAACTCGTTACTT+TGG | + | chr8.1:20605303-20605322 | None:intergenic | 45.0% | |
| CTTCTTGCTTGAATCAGCGT+TGG | + | chr8.1:20607442-20607461 | None:intergenic | 45.0% | |
| GAAAATGAGATGGAGGCAGT+AGG | + | chr8.1:20606998-20607017 | None:intergenic | 45.0% | |
| GAAGAGAAAGTTGGATCAGG+AGG | - | chr8.1:20607383-20607402 | MS.gene057157:CDS | 45.0% | |
| GACATCAATGTTCTTACGCG+GGG | + | chr8.1:20606925-20606944 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr8.1:20606203-20606222 | None:intergenic | 45.0% | |
| GAGTGGGAGATTGTGATTTG+TGG | - | chr8.1:20605765-20605784 | MS.gene057157:CDS | 45.0% | |
| GATTCCATGAGCTTCGAACA+AGG | + | chr8.1:20604308-20604327 | None:intergenic | 45.0% | |
| GCCATGAGAAAATGAGATGG+AGG | + | chr8.1:20607005-20607024 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | - | chr8.1:20604316-20604335 | MS.gene057157:CDS | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr8.1:20606204-20606223 | None:intergenic | 45.0% | |
| GGAGGATGAAGTTCAGGATA+AGG | - | chr8.1:20607401-20607420 | MS.gene057157:CDS | 45.0% | |
| GTATTATGACCGATGAGCTG+AGG | - | chr8.1:20605161-20605180 | MS.gene057157:intron | 45.0% | |
| TACAGGTCAAAACGGGCAAA+GGG | + | chr8.1:20605422-20605441 | None:intergenic | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr8.1:20606096-20606115 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr8.1:20606205-20606224 | None:intergenic | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr8.1:20605916-20605935 | MS.gene057157:intron | 45.0% | |
| TGTGTGTGTGTGTGTGTGTT+GGG | + | chr8.1:20605732-20605751 | None:intergenic | 45.0% | |
| TTCACATTTGCTCTTGCGCA+TGG | - | chr8.1:20605697-20605716 | MS.gene057157:CDS | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr8.1:20604428-20604447 | None:intergenic | 45.0% | |
| TTGCAAGATAGCGAGCCATT+CGG | + | chr8.1:20606702-20606721 | None:intergenic | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | + | chr8.1:20604374-20604393 | None:intergenic | 45.0% | |
| TTTCTGCCTGCTACTACATG+GGG | - | chr8.1:20607056-20607075 | MS.gene057157:intron | 45.0% | |
| ! | GCCTCCATCTCATTTTCTCA+TGG | - | chr8.1:20607001-20607020 | MS.gene057157:intron | 45.0% |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr8.1:20606809-20606828 | MS.gene057157:intron | 45.0% |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr8.1:20605244-20605263 | MS.gene057157:intron | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr8.1:20606408-20606427 | MS.gene057157:CDS | 45.0% |
| !! | GAAGCCTTAACTGACTTGGT+TGG | - | chr8.1:20606038-20606057 | MS.gene057157:intron | 45.0% |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr8.1:20605139-20605158 | MS.gene057157:intron | 45.0% |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr8.1:20606322-20606341 | MS.gene057157:intron | 45.0% |
| AAAGACCCCCATGTAGTAGC+AGG | + | chr8.1:20607065-20607084 | None:intergenic | 50.0% | |
| AATCACAATCTCCCACTCCC+TGG | + | chr8.1:20605763-20605782 | None:intergenic | 50.0% | |
| ACACACACACACACACACCA+GGG | - | chr8.1:20605743-20605762 | MS.gene057157:CDS | 50.0% | |
| ACAGGTCAAAACGGGCAAAG+GGG | + | chr8.1:20605421-20605440 | None:intergenic | 50.0% | |
| AGCTGCAGATGGAGATGACA+TGG | - | chr8.1:20607284-20607303 | MS.gene057157:intron | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr8.1:20606186-20606205 | MS.gene057157:CDS | 50.0% | |
| ATGGAGGCAGTAGGTCTCAT+AGG | + | chr8.1:20606989-20607008 | None:intergenic | 50.0% | |
| CAAATCAACGCCGTCTCTGA+AGG | - | chr8.1:20604448-20604467 | MS.gene057157:CDS | 50.0% | |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr8.1:20605512-20605531 | MS.gene057157:CDS | 50.0% | |
| CGAGCATCTGCCAGAAACAA+AGG | - | chr8.1:20606676-20606695 | MS.gene057157:intron | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | - | chr8.1:20604277-20604296 | MS.gene057157:CDS | 50.0% | |
| GCGAACTTATTCGTGGTGTC+AGG | - | chr8.1:20605320-20605339 | MS.gene057157:intron | 50.0% | |
| GGATCAGGAGGATGAAGTTC+AGG | - | chr8.1:20607395-20607414 | MS.gene057157:CDS | 50.0% | |
| GTGTGTGTGTGTGTGTGTGT+TGG | + | chr8.1:20605733-20605752 | None:intergenic | 50.0% | |
| GTGTGTGTGTGTGTGTGTTG+GGG | + | chr8.1:20605731-20605750 | None:intergenic | 50.0% | |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr8.1:20606803-20606822 | None:intergenic | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | - | chr8.1:20606684-20606703 | MS.gene057157:intron | 50.0% | |
| TGGAGGCAGTAGGTCTCATA+GGG | + | chr8.1:20606988-20607007 | None:intergenic | 50.0% | |
| TTCTGCCTGCTACTACATGG+GGG | - | chr8.1:20607057-20607076 | MS.gene057157:intron | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr8.1:20606689-20606708 | None:intergenic | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr8.1:20605171-20605190 | MS.gene057157:intron | 50.0% |
| ! | GATTTGGAGAAGGCACAGCT+TGG | - | chr8.1:20605483-20605502 | MS.gene057157:CDS | 50.0% |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr8.1:20606878-20606897 | None:intergenic | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr8.1:20605515-20605534 | None:intergenic | 50.0% |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr8.1:20606419-20606438 | MS.gene057157:CDS | 50.0% |
| !! | GTTACCGATTTGAGCCGCTT+CGG | - | chr8.1:20604367-20604386 | MS.gene057157:CDS | 50.0% |
| ACACACACACACCAGGGAGT+GGG | - | chr8.1:20605749-20605768 | MS.gene057157:CDS | 55.0% | |
| CACACACACACACACACACC+AGG | - | chr8.1:20605742-20605761 | MS.gene057157:CDS | 55.0% | |
| CTCAAGCACACAAGTGTCCC+CGG | - | chr8.1:20605798-20605817 | MS.gene057157:CDS | 55.0% | |
| GCTCGCTTGATATCCCATGC+TGG | - | chr8.1:20606346-20606365 | MS.gene057157:intron | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr8.1:20605798-20605817 | None:intergenic | 55.0% | |
| TGCTCTTGCGCATGGTCTAC+TGG | - | chr8.1:20605705-20605724 | MS.gene057157:CDS | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr8.1:20606088-20606107 | MS.gene057157:intron | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr8.1:20606089-20606108 | MS.gene057157:intron | 55.0% |
| CACACACACACACCAGGGAG+TGG | - | chr8.1:20605748-20605767 | MS.gene057157:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 20604265 | 20607497 | 20604265 | ID=MS.gene057157 |
| chr8.1 | mRNA | 20604265 | 20607497 | 20604265 | ID=MS.gene057157.t1;Parent=MS.gene057157 |
| chr8.1 | exon | 20607293 | 20607497 | 20607293 | ID=MS.gene057157.t1.exon1;Parent=MS.gene057157.t1 |
| chr8.1 | CDS | 20607293 | 20607497 | 20607293 | ID=cds.MS.gene057157.t1;Parent=MS.gene057157.t1 |
| chr8.1 | exon | 20606387 | 20606601 | 20606387 | ID=MS.gene057157.t1.exon2;Parent=MS.gene057157.t1 |
| chr8.1 | CDS | 20606387 | 20606601 | 20606387 | ID=cds.MS.gene057157.t1;Parent=MS.gene057157.t1 |
| chr8.1 | exon | 20606128 | 20606285 | 20606128 | ID=MS.gene057157.t1.exon3;Parent=MS.gene057157.t1 |
| chr8.1 | CDS | 20606128 | 20606285 | 20606128 | ID=cds.MS.gene057157.t1;Parent=MS.gene057157.t1 |
| chr8.1 | exon | 20605652 | 20605839 | 20605652 | ID=MS.gene057157.t1.exon4;Parent=MS.gene057157.t1 |
| chr8.1 | CDS | 20605652 | 20605839 | 20605652 | ID=cds.MS.gene057157.t1;Parent=MS.gene057157.t1 |
| chr8.1 | exon | 20605322 | 20605574 | 20605322 | ID=MS.gene057157.t1.exon5;Parent=MS.gene057157.t1 |
| chr8.1 | CDS | 20605322 | 20605574 | 20605322 | ID=cds.MS.gene057157.t1;Parent=MS.gene057157.t1 |
| chr8.1 | exon | 20605002 | 20605150 | 20605002 | ID=MS.gene057157.t1.exon6;Parent=MS.gene057157.t1 |
| chr8.1 | CDS | 20605002 | 20605150 | 20605002 | ID=cds.MS.gene057157.t1;Parent=MS.gene057157.t1 |
| chr8.1 | exon | 20604787 | 20604918 | 20604787 | ID=MS.gene057157.t1.exon7;Parent=MS.gene057157.t1 |
| chr8.1 | CDS | 20604787 | 20604918 | 20604787 | ID=cds.MS.gene057157.t1;Parent=MS.gene057157.t1 |
| chr8.1 | exon | 20604265 | 20604536 | 20604265 | ID=MS.gene057157.t1.exon8;Parent=MS.gene057157.t1 |
| chr8.1 | CDS | 20604265 | 20604536 | 20604265 | ID=cds.MS.gene057157.t1;Parent=MS.gene057157.t1 |
| Gene Sequence |
| Protein sequence |
