Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033349.t1 | XP_003608861.1 | 99.1 | 442 | 3 | 1 | 1 | 441 | 1 | 442 | 5.40E-243 | 850.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033349.t1 | O00567 | 59.4 | 431 | 171 | 1 | 3 | 433 | 4 | 430 | 2.5e-140 | 500.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033349.t1 | B7FLU4 | 99.1 | 442 | 3 | 1 | 1 | 441 | 1 | 442 | 3.9e-243 | 850.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033349.t1 | MTR_4g103790 | 98.664 | 524 | 6 | 1 | 1 | 523 | 1 | 524 | 0.0 | 1050 |
| MS.gene033349.t1 | MTR_4g070910 | 43.243 | 407 | 216 | 4 | 3 | 408 | 1 | 393 | 5.74e-103 | 320 |
| MS.gene033349.t1 | MTR_5g010260 | 42.892 | 408 | 216 | 5 | 3 | 408 | 1 | 393 | 1.78e-102 | 320 |
| MS.gene033349.t1 | MTR_6g069570 | 75.385 | 65 | 15 | 1 | 345 | 408 | 125 | 189 | 2.25e-24 | 100 |
| MS.gene033349.t1 | MTR_7g037560 | 27.273 | 220 | 152 | 2 | 192 | 409 | 117 | 330 | 4.19e-18 | 87.4 |
| MS.gene033349.t1 | MTR_7g037560 | 27.027 | 222 | 154 | 2 | 192 | 411 | 56 | 271 | 4.32e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033349.t1 | AT1G56110 | 78.899 | 436 | 92 | 0 | 1 | 436 | 1 | 436 | 0.0 | 749 |
| MS.gene033349.t1 | AT3G12860 | 79.909 | 438 | 88 | 0 | 1 | 438 | 1 | 438 | 0.0 | 743 |
| MS.gene033349.t1 | AT3G05060 | 43.578 | 436 | 232 | 7 | 3 | 437 | 2 | 424 | 4.76e-110 | 338 |
| MS.gene033349.t1 | AT5G27120 | 45.320 | 406 | 209 | 6 | 3 | 408 | 1 | 393 | 2.10e-109 | 336 |
| MS.gene033349.t1 | AT5G27140 | 40.385 | 364 | 205 | 4 | 96 | 456 | 57 | 411 | 2.75e-78 | 253 |
| MS.gene033349.t1 | AT5G27140 | 40.110 | 364 | 204 | 5 | 96 | 456 | 57 | 409 | 6.56e-76 | 246 |
| MS.gene033349.t1 | AT1G60170 | 25.850 | 147 | 109 | 0 | 273 | 419 | 194 | 340 | 4.55e-15 | 78.2 |
Find 99 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.131146 | 8.3:-18602143 | None:intergenic |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 8.3:+18601854 | MS.gene033349:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 8.3:-18601767 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 8.3:-18599912 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 8.3:-18600674 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 8.3:-18601402 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 8.3:+18601014 | MS.gene033349:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 8.3:+18600640 | MS.gene033349:CDS |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 8.3:+18600936 | MS.gene033349:intron |
| GAAAAGGGTACTTCAGCATT+TGG | 0.369631 | 8.3:+18602300 | MS.gene033349:intron |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 8.3:+18601699 | MS.gene033349:CDS |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 8.3:-18602094 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 8.3:-18601553 | None:intergenic |
| AAAGAAAGAGAAGAGAAAGT+TGG | 0.395833 | 8.3:+18602829 | MS.gene033349:CDS |
| GGATCAGGAGGATGAAGTTC+AGG | 0.398273 | 8.3:+18602850 | MS.gene033349:CDS |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 8.3:+18601876 | MS.gene033349:CDS |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 8.3:-18601679 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 8.3:+18601053 | MS.gene033349:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 8.3:+18601001 | MS.gene033349:CDS |
| CGCACACAAACTCGTTACTT+TGG | 0.414058 | 8.3:-18600769 | None:intergenic |
| AGAGAAGAGAAAGTTGGATC+AGG | 0.424350 | 8.3:+18602835 | MS.gene033349:CDS |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 8.3:+18601373 | MS.gene033349:intron |
| GTTACCGATTTGAGCCGCTT+CGG | 0.428648 | 8.3:+18599861 | MS.gene033349:CDS |
| AACTGTTGCAGATACAGAAA+TGG | 0.437507 | 8.3:+18602670 | MS.gene033349:intron |
| ATCGCCAACCAAGTCAGTTA+AGG | 0.438260 | 8.3:-18601499 | None:intergenic |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 8.3:+18601443 | MS.gene033349:CDS |
| GCTCATGGAATCGACGAAAT+CGG | 0.440318 | 8.3:+18599810 | MS.gene033349:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.448681 | 8.3:+18602411 | MS.gene033349:CDS |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 8.3:-18599911 | None:intergenic |
| CTTCTCCACGAAACTGCTCT+TGG | 0.451567 | 8.3:+18599771 | MS.gene033349:CDS |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 8.3:+18602082 | MS.gene033349:CDS |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 8.3:+18601767 | MS.gene033349:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 8.3:+18601545 | MS.gene033349:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 8.3:+18601082 | MS.gene033349:CDS |
| GACTAACTTACCTAAAGTTA+AGG | 0.466664 | 8.3:+18600664 | MS.gene033349:CDS |
| GCGAACTTATTCGTGGTGTC+AGG | 0.471160 | 8.3:+18600789 | MS.gene033349:CDS |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 8.3:+18601458 | MS.gene033349:CDS |
| TTTACCGAAGCGGCTCAAAT+CGG | 0.474756 | 8.3:-18599865 | None:intergenic |
| GGAGGATGAAGTTCAGGATA+AGG | 0.480853 | 8.3:+18602856 | MS.gene033349:CDS |
| CTTCTTGCTTGAATCAGCGT+TGG | 0.485532 | 8.3:-18602894 | None:intergenic |
| ACAAACTCGTTACTTTGGAC+TGG | 0.486068 | 8.3:-18600764 | None:intergenic |
| TATGCCTTGTTCGAAGCTCA+TGG | 0.487581 | 8.3:+18599795 | MS.gene033349:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 8.3:+18600692 | MS.gene033349:CDS |
| GAAGAGAAAGTTGGATCAGG+AGG | 0.491231 | 8.3:+18602838 | MS.gene033349:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 8.3:+18601865 | MS.gene033349:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 8.3:-18601550 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.503464 | 8.3:+18601491 | MS.gene033349:CDS |
| CAGGATAAGGTTGTAGATGA+TGG | 0.505235 | 8.3:+18602869 | MS.gene033349:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 8.3:+18600676 | MS.gene033349:CDS |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 8.3:-18601852 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 8.3:+18599942 | MS.gene033349:CDS |
| CAAGTTTGTTGGTGATCTCA+AGG | 0.516645 | 8.3:+18600823 | MS.gene033349:CDS |
| CATAACCAAGAGCAGTTTCG+TGG | 0.523654 | 8.3:-18599776 | None:intergenic |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 8.3:-18599952 | None:intergenic |
| TTGCAAGATAGCGAGCCATT+CGG | 0.530118 | 8.3:-18602156 | None:intergenic |
| AAGGCTGCAGAAATTACAAA+TGG | 0.539269 | 8.3:+18602770 | MS.gene033349:CDS |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 8.3:-18600981 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 8.3:+18600981 | MS.gene033349:CDS |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 8.3:+18601546 | MS.gene033349:CDS |
| GAAGCCTTAACTGACTTGGT+TGG | 0.554526 | 8.3:+18601495 | MS.gene033349:CDS |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 8.3:-18599919 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 8.3:-18601706 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 8.3:-18602332 | None:intergenic |
| AGATGACATGGCTGTAGATA+AGG | 0.568881 | 8.3:+18602751 | MS.gene033349:CDS |
| TTTGTGTGCGAACTTATTCG+TGG | 0.571147 | 8.3:+18600782 | MS.gene033349:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 8.3:+18601705 | MS.gene033349:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 8.3:-18601851 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 8.3:-18601659 | None:intergenic |
| GATTTGGAGAAGGCACAGCT+TGG | 0.583090 | 8.3:+18600952 | MS.gene033349:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 8.3:-18601091 | None:intergenic |
| CAAAACAGTCCTCAGCTCAT+CGG | 0.583817 | 8.3:-18600639 | None:intergenic |
| GATTCCATGAGCTTCGAACA+AGG | 0.584519 | 8.3:-18599799 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 8.3:-18602114 | None:intergenic |
| TGCCAGAAACAAAGGCCGAA+TGG | 0.597003 | 8.3:+18602141 | MS.gene033349:CDS |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 8.3:+18600942 | MS.gene033349:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 8.3:-18601816 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 8.3:+18601779 | MS.gene033349:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 8.3:+18601002 | MS.gene033349:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.604940 | 8.3:+18600668 | MS.gene033349:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 8.3:+18601682 | MS.gene033349:CDS |
| CGAGCATCTGCCAGAAACAA+AGG | 0.606525 | 8.3:+18602133 | MS.gene033349:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 8.3:-18601020 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 8.3:+18601643 | MS.gene033349:intron |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 8.3:+18600713 | MS.gene033349:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 8.3:-18601053 | None:intergenic |
| AATTACAAATGGTGATGCGG+AGG | 0.625035 | 8.3:+18602781 | MS.gene033349:CDS |
| GCTTAACAACTTTACCGAAG+CGG | 0.627626 | 8.3:-18599875 | None:intergenic |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 8.3:-18602380 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 8.3:-18601817 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 8.3:+18601803 | MS.gene033349:CDS |
| GTATTATGACCGATGAGCTG+AGG | 0.640224 | 8.3:+18600630 | MS.gene033349:CDS |
| AGCTGCAGATGGAGATGACA+TGG | 0.642008 | 8.3:+18602739 | MS.gene033349:CDS |
| AGAAATTACAAATGGTGATG+CGG | 0.643384 | 8.3:+18602778 | MS.gene033349:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 8.3:-18602381 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 8.3:-18602379 | None:intergenic |
| TGGCGATGAAGATAAAGCAA+AGG | 0.665007 | 8.3:+18601515 | MS.gene033349:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 8.3:-18601658 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 8.3:-18601850 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 8.3:-18601657 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAGGATTATTTATCTAT+TGG | + | chr8.3:18601339-18601358 | MS.gene033349:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | + | chr8.3:18600370-18600389 | MS.gene033349:intron | 15.0% |
| !!! | ATAAAAATGACTTTTTTCAA+TGG | + | chr8.3:18600315-18600334 | MS.gene033349:intron | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | + | chr8.3:18600369-18600388 | MS.gene033349:intron | 15.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | - | chr8.3:18600898-18600917 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | - | chr8.3:18601914-18601933 | None:intergenic | 20.0% |
| !! | GAAAAAGAAATCAAAAAAGA+AGG | + | chr8.3:18602919-18602938 | MS.gene033349:CDS | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | - | chr8.3:18600908-18600927 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | - | chr8.3:18602229-18602248 | None:intergenic | 20.0% |
| !! | TATAATTTATGTAGTGCATT+AGG | - | chr8.3:18602628-18602647 | None:intergenic | 20.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | + | chr8.3:18600004-18600023 | MS.gene033349:intron | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | + | chr8.3:18600484-18600503 | MS.gene033349:intron | 20.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | + | chr8.3:18600021-18600040 | MS.gene033349:intron | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | + | chr8.3:18600005-18600024 | MS.gene033349:intron | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | - | chr8.3:18600899-18600918 | None:intergenic | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | + | chr8.3:18601443-18601462 | MS.gene033349:CDS | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | + | chr8.3:18601283-18601302 | MS.gene033349:intron | 25.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | + | chr8.3:18600003-18600022 | MS.gene033349:intron | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | + | chr8.3:18600027-18600046 | MS.gene033349:intron | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | - | chr8.3:18602097-18602116 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAAAAGATTATG+TGG | + | chr8.3:18600255-18600274 | MS.gene033349:intron | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | + | chr8.3:18600130-18600149 | MS.gene033349:intron | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | + | chr8.3:18602109-18602128 | MS.gene033349:CDS | 25.0% |
| !! | ATTTTCTCATAGCATGAATT+TGG | + | chr8.3:18602469-18602488 | MS.gene033349:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | - | chr8.3:18600414-18600433 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | - | chr8.3:18600457-18600476 | None:intergenic | 25.0% |
| !!! | CTTAAGTTGTTTTTGTTTGT+TGG | + | chr8.3:18600594-18600613 | MS.gene033349:intron | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | + | chr8.3:18601908-18601927 | MS.gene033349:intron | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | - | chr8.3:18600456-18600475 | None:intergenic | 25.0% |
| AAAGAAAGAGAAGAGAAAGT+TGG | + | chr8.3:18602829-18602848 | MS.gene033349:CDS | 30.0% | |
| AACTTACCTAAAGTTAAGGA+AGG | + | chr8.3:18600668-18600687 | MS.gene033349:CDS | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | + | chr8.3:18600936-18600955 | MS.gene033349:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | + | chr8.3:18601001-18601020 | MS.gene033349:CDS | 30.0% | |
| CATATAGCATCACCAAAAAA+TGG | - | chr8.3:18602544-18602563 | None:intergenic | 30.0% | |
| GACAAGTGACTGTTATTATT+GGG | + | chr8.3:18601999-18602018 | MS.gene033349:intron | 30.0% | |
| GACTAACTTACCTAAAGTTA+AGG | + | chr8.3:18600664-18600683 | MS.gene033349:CDS | 30.0% | |
| GAGTTTATTACCTTCAGAAA+CGG | - | chr8.3:18599955-18599974 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | + | chr8.3:18600676-18600695 | MS.gene033349:CDS | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | + | chr8.3:18601458-18601477 | MS.gene033349:CDS | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | + | chr8.3:18601323-18601342 | MS.gene033349:intron | 30.0% | |
| TGCATTTGAATTCAATAGCA+AGG | + | chr8.3:18600928-18600947 | MS.gene033349:intron | 30.0% | |
| TTACTATACAGGAAACAAAC+CGG | - | chr8.3:18602218-18602237 | None:intergenic | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | - | chr8.3:18600677-18600696 | None:intergenic | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | - | chr8.3:18601405-18601424 | None:intergenic | 30.0% | |
| ! | AGAAATTACAAATGGTGATG+CGG | + | chr8.3:18602778-18602797 | MS.gene033349:CDS | 30.0% |
| ! | CGACTTGACTTTTATGATAA+GGG | + | chr8.3:18602351-18602370 | MS.gene033349:CDS | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | + | chr8.3:18600538-18600557 | MS.gene033349:intron | 30.0% |
| !! | CAACATTTTGACAAGTTTGT+TGG | + | chr8.3:18600812-18600831 | MS.gene033349:CDS | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | + | chr8.3:18602411-18602430 | MS.gene033349:CDS | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | + | chr8.3:18602196-18602215 | MS.gene033349:CDS | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+GGG | + | chr8.3:18602416-18602435 | MS.gene033349:intron | 30.0% |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | + | chr8.3:18600187-18600206 | MS.gene033349:intron | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | + | chr8.3:18600539-18600558 | MS.gene033349:intron | 30.0% |
| !! | TTGAAAGTGTTGATAAAGGT+AGG | + | chr8.3:18602415-18602434 | MS.gene033349:intron | 30.0% |
| !!! | AAGTTGTTTTTGTTTGTTGG+TGG | + | chr8.3:18600597-18600616 | MS.gene033349:intron | 30.0% |
| !!! | CATTTTTTGGTGATGCTATA+TGG | + | chr8.3:18602542-18602561 | MS.gene033349:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | + | chr8.3:18602048-18602067 | MS.gene033349:intron | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | - | chr8.3:18600444-18600463 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | + | chr8.3:18602047-18602066 | MS.gene033349:intron | 30.0% |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | + | chr8.3:18601944-18601963 | MS.gene033349:intron | 30.0% |
| AACTGTTGCAGATACAGAAA+TGG | + | chr8.3:18602670-18602689 | MS.gene033349:intron | 35.0% | |
| AAGAATCTGAAGAGTTGAAG+AGG | - | chr8.3:18601855-18601874 | None:intergenic | 35.0% | |
| AAGGCTGCAGAAATTACAAA+TGG | + | chr8.3:18602770-18602789 | MS.gene033349:CDS | 35.0% | |
| AATTGAAGCCTTAACTGACT+TGG | + | chr8.3:18601491-18601510 | MS.gene033349:CDS | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | - | chr8.3:18601854-18601873 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | - | chr8.3:18602384-18602403 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | + | chr8.3:18600447-18600466 | MS.gene033349:intron | 35.0% | |
| CATGCTATGAGAAAATGAGA+TGG | - | chr8.3:18602465-18602484 | None:intergenic | 35.0% | |
| CCAACAAGTAAAAACACAAG+AGG | - | chr8.3:18600865-18600884 | None:intergenic | 35.0% | |
| GGACAAGTGACTGTTATTAT+TGG | + | chr8.3:18601998-18602017 | MS.gene033349:intron | 35.0% | |
| GGTTAAGTTCAATGTAAACC+GGG | + | chr8.3:18601002-18601021 | MS.gene033349:CDS | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | + | chr8.3:18601682-18601701 | MS.gene033349:CDS | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | - | chr8.3:18601556-18601575 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | - | chr8.3:18601682-18601701 | None:intergenic | 35.0% | |
| TCCTGAAAATAGAGAGACAA+AGG | - | chr8.3:18601627-18601646 | None:intergenic | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | + | chr8.3:18601854-18601873 | MS.gene033349:CDS | 35.0% | |
| TGACATCAATGTTCTTACGA+GGG | - | chr8.3:18602383-18602402 | None:intergenic | 35.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | - | chr8.3:18599914-18599933 | None:intergenic | 35.0% | |
| TTTGATGTGCTTTGCTTGTT+TGG | + | chr8.3:18600515-18600534 | MS.gene033349:intron | 35.0% | |
| ! | AGCTTTTTGCTTCTTCTTCT+TGG | - | chr8.3:18602723-18602742 | None:intergenic | 35.0% |
| ! | CTCAAGGTTGGCATTTATTT+TGG | + | chr8.3:18600839-18600858 | MS.gene033349:intron | 35.0% |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | + | chr8.3:18601977-18601996 | MS.gene033349:intron | 35.0% |
| ! | GCGACTTGACTTTTATGATA+AGG | + | chr8.3:18602350-18602369 | MS.gene033349:CDS | 35.0% |
| ! | TAACATAGTAAGTGTTGCCT+GGG | - | chr8.3:18601275-18601294 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | + | chr8.3:18601364-18601383 | MS.gene033349:intron | 35.0% |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | + | chr8.3:18601623-18601642 | MS.gene033349:intron | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | - | chr8.3:18601276-18601295 | None:intergenic | 35.0% |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | + | chr8.3:18600862-18600881 | MS.gene033349:intron | 35.0% |
| !! | CTCTAAAATGAAAGGCTACT+AGG | - | chr8.3:18600406-18600425 | None:intergenic | 35.0% |
| !! | CTTCTTCTTCTTGGTTTTCT+TGG | - | chr8.3:18602714-18602733 | None:intergenic | 35.0% |
| !!! | TTTTTGGTGATGCTATATGG+TGG | + | chr8.3:18602545-18602564 | MS.gene033349:intron | 35.0% |
| AAGAAGCAAAAAGCTGCAGA+TGG | + | chr8.3:18602728-18602747 | MS.gene033349:CDS | 40.0% | |
| AAGAAGGCAAAGTTCAGCTT+AGG | + | chr8.3:18600692-18600711 | MS.gene033349:CDS | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | - | chr8.3:18601820-18601839 | None:intergenic | 40.0% | |
| ACAGGTCAAAATGGGCAAAA+GGG | - | chr8.3:18600890-18600909 | None:intergenic | 40.0% | |
| ACCTATCTGATTACAGGAGA+AGG | + | chr8.3:18601705-18601724 | MS.gene033349:CDS | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | - | chr8.3:18601709-18601728 | None:intergenic | 40.0% | |
| AGAGAAGAGAAAGTTGGATC+AGG | + | chr8.3:18602835-18602854 | MS.gene033349:CDS | 40.0% | |
| AGAGGCAACACTCCTAAATA+TGG | + | chr8.3:18602082-18602101 | MS.gene033349:CDS | 40.0% | |
| AGATGACATGGCTGTAGATA+AGG | + | chr8.3:18602751-18602770 | MS.gene033349:CDS | 40.0% | |
| ATTTCTGCCTGCTACTACAT+GGG | + | chr8.3:18602510-18602529 | MS.gene033349:intron | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | - | chr8.3:18601819-18601838 | None:intergenic | 40.0% | |
| CAGGATAAGGTTGTAGATGA+TGG | + | chr8.3:18602869-18602888 | MS.gene033349:CDS | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | - | chr8.3:18601056-18601075 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | + | chr8.3:18601053-18601072 | MS.gene033349:CDS | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | - | chr8.3:18602117-18602136 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | - | chr8.3:18599915-18599934 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | - | chr8.3:18601853-18601872 | None:intergenic | 40.0% | |
| GAATGACCATATTGTCAACC+CGG | - | chr8.3:18601023-18601042 | None:intergenic | 40.0% | |
| GACATCAATGTTCTTACGAG+GGG | - | chr8.3:18602382-18602401 | None:intergenic | 40.0% | |
| GCTATGAGAAAATGAGATGG+AGG | - | chr8.3:18602462-18602481 | None:intergenic | 40.0% | |
| GCTTAACAACTTTACCGAAG+CGG | - | chr8.3:18599878-18599897 | None:intergenic | 40.0% | |
| TACAGGTCAAAATGGGCAAA+AGG | - | chr8.3:18600891-18600910 | None:intergenic | 40.0% | |
| TGGCGATGAAGATAAAGCAA+AGG | + | chr8.3:18601515-18601534 | MS.gene033349:CDS | 40.0% | |
| TTGGTGTGTTCTGCAGAAAA+GGG | + | chr8.3:18602285-18602304 | MS.gene033349:intron | 40.0% | |
| TTTGTGTGCGAACTTATTCG+TGG | + | chr8.3:18600782-18600801 | MS.gene033349:CDS | 40.0% | |
| ! | AATTACAAATGGTGATGCGG+AGG | + | chr8.3:18602781-18602800 | MS.gene033349:CDS | 40.0% |
| ! | ACAAACTCGTTACTTTGGAC+TGG | - | chr8.3:18600767-18600786 | None:intergenic | 40.0% |
| ! | AGTGGGAGATTGTGATTTGT+GGG | + | chr8.3:18601223-18601242 | MS.gene033349:intron | 40.0% |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | + | chr8.3:18600942-18600961 | MS.gene033349:intron | 40.0% |
| ! | TATTTCTGCCTGCTACTACA+TGG | + | chr8.3:18602509-18602528 | MS.gene033349:intron | 40.0% |
| ! | TGATGGACCTATCTGATTAC+AGG | + | chr8.3:18601699-18601718 | MS.gene033349:CDS | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | + | chr8.3:18601014-18601033 | MS.gene033349:CDS | 40.0% |
| ! | TTCAGGGCATTAAAAACGAG+AGG | + | chr8.3:18602064-18602083 | MS.gene033349:intron | 40.0% |
| ! | TTTGGTGTGTTCTGCAGAAA+AGG | + | chr8.3:18602284-18602303 | MS.gene033349:intron | 40.0% |
| !! | CAAGTTTGTTGGTGATCTCA+AGG | + | chr8.3:18600823-18600842 | MS.gene033349:CDS | 40.0% |
| !! | GAAAAGGGTACTTCAGCATT+TGG | + | chr8.3:18602300-18602319 | MS.gene033349:intron | 40.0% |
| !! | TGGGGGTCTTTTCCATTTTT+TGG | + | chr8.3:18602529-18602548 | MS.gene033349:intron | 40.0% |
| !! | TTTGTTGGTGATCTCAAGGT+TGG | + | chr8.3:18600827-18600846 | MS.gene033349:intron | 40.0% |
| ATCGCCAACCAAGTCAGTTA+AGG | - | chr8.3:18601502-18601521 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | + | chr8.3:18601082-18601101 | MS.gene033349:CDS | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | - | chr8.3:18600642-18600661 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | + | chr8.3:18599942-18599961 | MS.gene033349:CDS | 45.0% | |
| CAACACACACACACAAACCA+GGG | + | chr8.3:18601200-18601219 | MS.gene033349:intron | 45.0% | |
| CATAACCAAGAGCAGTTTCG+TGG | - | chr8.3:18599779-18599798 | None:intergenic | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | + | chr8.3:18601767-18601786 | MS.gene033349:CDS | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | - | chr8.3:18601770-18601789 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | + | chr8.3:18601091-18601110 | MS.gene033349:intron | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | - | chr8.3:18601094-18601113 | None:intergenic | 45.0% | |
| CGCACACAAACTCGTTACTT+TGG | - | chr8.3:18600772-18600791 | None:intergenic | 45.0% | |
| CTTCTTGCTTGAATCAGCGT+TGG | - | chr8.3:18602897-18602916 | None:intergenic | 45.0% | |
| GAAAATGAGATGGAGGCAGT+AGG | - | chr8.3:18602455-18602474 | None:intergenic | 45.0% | |
| GAAGAGAAAGTTGGATCAGG+AGG | + | chr8.3:18602838-18602857 | MS.gene033349:CDS | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | - | chr8.3:18601660-18601679 | None:intergenic | 45.0% | |
| GAGTGGGAGATTGTGATTTG+TGG | + | chr8.3:18601222-18601241 | MS.gene033349:intron | 45.0% | |
| GATTCCATGAGCTTCGAACA+AGG | - | chr8.3:18599802-18599821 | None:intergenic | 45.0% | |
| GCTCATGGAATCGACGAAAT+CGG | + | chr8.3:18599810-18599829 | MS.gene033349:CDS | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | - | chr8.3:18601661-18601680 | None:intergenic | 45.0% | |
| GGAGGATGAAGTTCAGGATA+AGG | + | chr8.3:18602856-18602875 | MS.gene033349:CDS | 45.0% | |
| GTATTATGACCGATGAGCTG+AGG | + | chr8.3:18600630-18600649 | MS.gene033349:CDS | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | - | chr8.3:18601553-18601572 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | - | chr8.3:18601662-18601681 | None:intergenic | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | + | chr8.3:18601373-18601392 | MS.gene033349:intron | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | - | chr8.3:18599922-18599941 | None:intergenic | 45.0% | |
| TTGCAAGATAGCGAGCCATT+CGG | - | chr8.3:18602159-18602178 | None:intergenic | 45.0% | |
| TTTACCGAAGCGGCTCAAAT+CGG | - | chr8.3:18599868-18599887 | None:intergenic | 45.0% | |
| TTTCTGCCTGCTACTACATG+GGG | + | chr8.3:18602511-18602530 | MS.gene033349:intron | 45.0% | |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | - | chr8.3:18601201-18601220 | None:intergenic | 45.0% |
| ! | GCGCATCTGAATCATGCTTT+TGG | + | chr8.3:18602266-18602285 | MS.gene033349:intron | 45.0% |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | + | chr8.3:18600713-18600732 | MS.gene033349:CDS | 45.0% |
| ! | TATGCCTTGTTCGAAGCTCA+TGG | + | chr8.3:18599795-18599814 | MS.gene033349:CDS | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | + | chr8.3:18601865-18601884 | MS.gene033349:CDS | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | - | chr8.3:18601200-18601219 | None:intergenic | 45.0% |
| !! | GAAGCCTTAACTGACTTGGT+TGG | + | chr8.3:18601495-18601514 | MS.gene033349:CDS | 45.0% |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | + | chr8.3:18600608-18600627 | MS.gene033349:intron | 45.0% |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | + | chr8.3:18601779-18601798 | MS.gene033349:CDS | 45.0% |
| !! | TTCACATCTGCTTTTGCGCA+TGG | + | chr8.3:18601166-18601185 | MS.gene033349:intron | 45.0% |
| AAAGACCCCCATGTAGTAGC+AGG | - | chr8.3:18602520-18602539 | None:intergenic | 50.0% | |
| AATCACAATCTCCCACTCCC+TGG | - | chr8.3:18601220-18601239 | None:intergenic | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | + | chr8.3:18601206-18601225 | MS.gene033349:intron | 50.0% | |
| AGCTGCAGATGGAGATGACA+TGG | + | chr8.3:18602739-18602758 | MS.gene033349:CDS | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | + | chr8.3:18601643-18601662 | MS.gene033349:intron | 50.0% | |
| ATGGAGGCAGTAGGTCTCAT+AGG | - | chr8.3:18602446-18602465 | None:intergenic | 50.0% | |
| CCAACACACACACACAAACC+AGG | + | chr8.3:18601199-18601218 | MS.gene033349:intron | 50.0% | |
| CCACAGTTACAGCAGAGCTA+AGG | + | chr8.3:18600981-18601000 | MS.gene033349:CDS | 50.0% | |
| CGAGCATCTGCCAGAAACAA+AGG | + | chr8.3:18602133-18602152 | MS.gene033349:CDS | 50.0% | |
| CTTCTCCACGAAACTGCTCT+TGG | + | chr8.3:18599771-18599790 | MS.gene033349:CDS | 50.0% | |
| GCGAACTTATTCGTGGTGTC+AGG | + | chr8.3:18600789-18600808 | MS.gene033349:CDS | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | + | chr8.3:18601803-18601822 | MS.gene033349:CDS | 50.0% | |
| GGATCAGGAGGATGAAGTTC+AGG | + | chr8.3:18602850-18602869 | MS.gene033349:CDS | 50.0% | |
| TGATTCAGATGCGCAGCGTA+AGG | - | chr8.3:18602260-18602279 | None:intergenic | 50.0% | |
| TGCCAGAAACAAAGGCCGAA+TGG | + | chr8.3:18602141-18602160 | MS.gene033349:CDS | 50.0% | |
| TGGAGGCAGTAGGTCTCATA+GGG | - | chr8.3:18602445-18602464 | None:intergenic | 50.0% | |
| TTCTGCCTGCTACTACATGG+GGG | + | chr8.3:18602512-18602531 | MS.gene033349:intron | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | - | chr8.3:18602146-18602165 | None:intergenic | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | - | chr8.3:18601202-18601221 | None:intergenic | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | + | chr8.3:18600640-18600659 | MS.gene033349:CDS | 50.0% |
| ! | GATTTGGAGAAGGCACAGCT+TGG | + | chr8.3:18600952-18600971 | MS.gene033349:CDS | 50.0% |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | - | chr8.3:18602335-18602354 | None:intergenic | 50.0% |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | + | chr8.3:18601174-18601193 | MS.gene033349:intron | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | - | chr8.3:18600984-18601003 | None:intergenic | 50.0% |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | + | chr8.3:18601876-18601895 | MS.gene033349:CDS | 50.0% |
| !! | GTTACCGATTTGAGCCGCTT+CGG | + | chr8.3:18599861-18599880 | MS.gene033349:CDS | 50.0% |
| CACACACACAAACCAGGGAG+TGG | + | chr8.3:18601205-18601224 | MS.gene033349:intron | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | + | chr8.3:18601255-18601274 | MS.gene033349:intron | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | - | chr8.3:18601255-18601274 | None:intergenic | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | + | chr8.3:18601545-18601564 | MS.gene033349:CDS | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | + | chr8.3:18601546-18601565 | MS.gene033349:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18599759 | 18602952 | 18599759 | ID=MS.gene033349 |
| chr8.3 | mRNA | 18599759 | 18602952 | 18599759 | ID=MS.gene033349.t1;Parent=MS.gene033349 |
| chr8.3 | exon | 18599759 | 18599963 | 18599759 | ID=MS.gene033349.t1.exon1;Parent=MS.gene033349.t1 |
| chr8.3 | CDS | 18599759 | 18599963 | 18599759 | ID=cds.MS.gene033349.t1;Parent=MS.gene033349.t1 |
| chr8.3 | exon | 18600630 | 18600844 | 18600630 | ID=MS.gene033349.t1.exon2;Parent=MS.gene033349.t1 |
| chr8.3 | CDS | 18600630 | 18600844 | 18600630 | ID=cds.MS.gene033349.t1;Parent=MS.gene033349.t1 |
| chr8.3 | exon | 18600946 | 18601103 | 18600946 | ID=MS.gene033349.t1.exon3;Parent=MS.gene033349.t1 |
| chr8.3 | CDS | 18600946 | 18601103 | 18600946 | ID=cds.MS.gene033349.t1;Parent=MS.gene033349.t1 |
| chr8.3 | exon | 18601380 | 18601567 | 18601380 | ID=MS.gene033349.t1.exon4;Parent=MS.gene033349.t1 |
| chr8.3 | CDS | 18601380 | 18601567 | 18601380 | ID=cds.MS.gene033349.t1;Parent=MS.gene033349.t1 |
| chr8.3 | exon | 18601645 | 18601897 | 18601645 | ID=MS.gene033349.t1.exon5;Parent=MS.gene033349.t1 |
| chr8.3 | CDS | 18601645 | 18601897 | 18601645 | ID=cds.MS.gene033349.t1;Parent=MS.gene033349.t1 |
| chr8.3 | exon | 18602069 | 18602217 | 18602069 | ID=MS.gene033349.t1.exon6;Parent=MS.gene033349.t1 |
| chr8.3 | CDS | 18602069 | 18602217 | 18602069 | ID=cds.MS.gene033349.t1;Parent=MS.gene033349.t1 |
| chr8.3 | exon | 18602301 | 18602432 | 18602301 | ID=MS.gene033349.t1.exon7;Parent=MS.gene033349.t1 |
| chr8.3 | CDS | 18602301 | 18602432 | 18602301 | ID=cds.MS.gene033349.t1;Parent=MS.gene033349.t1 |
| chr8.3 | exon | 18602681 | 18602952 | 18602681 | ID=MS.gene033349.t1.exon8;Parent=MS.gene033349.t1 |
| chr8.3 | CDS | 18602681 | 18602952 | 18602681 | ID=cds.MS.gene033349.t1;Parent=MS.gene033349.t1 |
| Gene Sequence |
| Protein sequence |
