AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24137

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24137.t1 MTR_1g025420 96.330 327 6 2 1 325 1 323 0.0 636
MS.gene24137.t1 MTR_1g025420 98.031 254 1 1 1 254 1 250 0.0 504
MS.gene24137.t1 MTR_3g114030 80.591 237 46 0 21 257 1 237 2.04e-143 404
MS.gene24137.t1 MTR_8g037890 56.740 319 127 7 5 319 6 317 3.81e-120 348
MS.gene24137.t1 MTR_5g022310 68.852 244 72 3 15 255 14 256 3.98e-118 343
MS.gene24137.t1 MTR_5g022310 69.008 242 71 3 15 253 14 254 1.62e-117 339
MS.gene24137.t1 MTR_8g075550 70.464 237 63 3 20 251 21 255 2.23e-116 338
MS.gene24137.t1 MTR_4g073730 52.960 321 137 5 6 324 3 311 1.85e-114 334
MS.gene24137.t1 MTR_8g056820 66.397 247 77 4 15 260 14 255 1.53e-112 327
MS.gene24137.t1 MTR_4g073730 62.205 254 93 3 6 257 3 255 1.12e-111 326
MS.gene24137.t1 MTR_4g073720 64.876 242 74 5 8 249 9 239 3.89e-104 308
MS.gene24137.t1 MTR_5g022350 51.735 317 138 7 3 318 9 311 3.42e-100 298
MS.gene24137.t1 MTR_8g075510 61.044 249 87 5 3 251 7 245 2.28e-99 293
MS.gene24137.t1 MTR_8g075510 61.134 247 86 5 3 249 7 243 3.71e-99 295
MS.gene24137.t1 MTR_7g102380 55.230 239 104 3 11 249 5 240 2.37e-94 280
MS.gene24137.t1 MTR_1g062660 56.574 251 101 5 1 251 1 243 1.40e-87 263
MS.gene24137.t1 MTR_1g062590 52.675 243 112 3 7 249 2 241 5.38e-87 261
MS.gene24137.t1 MTR_8g036215 54.508 244 101 6 6 249 4 237 1.48e-86 260
MS.gene24137.t1 MTR_2g069660 53.333 240 105 4 13 249 7 242 2.97e-86 259
MS.gene24137.t1 MTR_2g068655 52.610 249 113 4 3 249 6 251 6.27e-86 261
MS.gene24137.t1 MTR_1g062350 54.762 252 104 5 1 251 1 243 9.84e-86 258
MS.gene24137.t1 MTR_1g062370 54.365 252 105 5 1 251 1 243 1.11e-85 258
MS.gene24137.t1 MTR_2g067980 53.876 258 108 7 11 263 7 258 1.84e-85 278
MS.gene24137.t1 MTR_2g068030 54.978 231 98 5 21 249 17 243 6.77e-85 256
MS.gene24137.t1 MTR_1g062630 52.846 246 113 3 6 251 1 243 1.13e-84 256
MS.gene24137.t1 MTR_1g062340 53.785 251 108 5 1 251 1 243 6.02e-84 254
MS.gene24137.t1 MTR_6g079580 50.833 240 113 4 10 249 5 239 3.57e-80 244
MS.gene24137.t1 MTR_8g107140 52.917 240 108 4 10 249 10 244 8.51e-80 243
MS.gene24137.t1 MTR_1g021945 57.522 226 88 6 26 249 25 244 1.26e-79 243
MS.gene24137.t1 MTR_3g111620 52.632 247 108 8 11 255 10 249 2.25e-74 229
MS.gene24137.t1 MTR_3g068015 48.193 249 118 8 7 249 4 247 3.18e-70 219
MS.gene24137.t1 MTR_1g062690 49.206 252 94 6 1 251 1 219 7.32e-70 217
MS.gene24137.t1 MTR_5g059200 48.810 252 115 9 1 250 1 240 8.87e-69 216
MS.gene24137.t1 MTR_6g009480 45.778 225 116 6 28 249 30 251 6.52e-64 203
MS.gene24137.t1 MTR_7g062610 46.531 245 125 6 9 252 5 244 7.10e-64 202
MS.gene24137.t1 MTR_4g063630 44.444 225 117 7 29 249 31 251 6.61e-61 195
MS.gene24137.t1 MTR_5g023850 54.237 177 76 3 14 187 13 187 4.08e-60 192
MS.gene24137.t1 MTR_2g067990 47.186 231 88 9 22 249 22 221 1.47e-55 194
MS.gene24137.t1 MTR_5g010640 40.964 249 118 8 8 249 9 235 5.93e-50 166
MS.gene24137.t1 MTR_2g067970 46.701 197 94 8 69 261 2 191 7.62e-50 178
MS.gene24137.t1 MTR_5g022350 56.329 158 60 5 2 158 73 222 3.75e-48 161
MS.gene24137.t1 MTR_5g010635 40.000 225 111 7 26 249 23 224 1.74e-46 157
MS.gene24137.t1 MTR_8g096900 39.918 243 118 9 10 249 30 247 5.67e-46 156
MS.gene24137.t1 MTR_7g076360 38.318 214 67 4 26 239 7 155 1.66e-39 137
MS.gene24137.t1 MTR_8g089020 52.672 131 56 3 111 241 32 156 3.63e-38 133
MS.gene24137.t1 MTR_2g063150 31.276 243 151 6 10 243 9 244 3.19e-37 134
MS.gene24137.t1 MTR_1g062390 30.769 247 153 6 10 251 6 239 4.59e-32 120
MS.gene24137.t1 MTR_3g081550 57.447 94 40 0 112 205 16 109 1.46e-30 112
MS.gene24137.t1 MTR_8g096910 43.478 138 66 6 8 142 1 129 4.46e-26 102
MS.gene24137.t1 MTR_8g096920 40.769 130 67 4 17 145 9 129 2.78e-21 89.4
MS.gene24137.t1 MTR_1g062640 44.792 96 51 2 73 168 53 146 6.12e-18 79.7
MS.gene24137.t1 MTR_3g114040 56.944 72 27 2 255 325 33 101 2.20e-15 71.2
MS.gene24137.t1 MTR_5g068670 43.750 80 42 2 65 144 13 89 3.77e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24137.t1 AT1G75800 63.609 327 95 4 13 321 9 329 7.86e-148 419
MS.gene24137.t1 AT1G20030 66.885 305 95 3 23 325 16 316 3.77e-144 409
MS.gene24137.t1 AT1G20030 66.667 303 95 3 25 325 1 299 1.19e-142 405
MS.gene24137.t1 AT4G36010 63.736 273 91 4 23 289 19 289 7.13e-118 342
MS.gene24137.t1 AT4G36010 63.736 273 91 4 23 289 19 289 7.13e-118 342
MS.gene24137.t1 AT4G38670 61.446 249 95 1 10 257 6 254 1.80e-110 322
MS.gene24137.t1 AT4G38670 61.446 249 95 1 10 257 6 254 1.80e-110 322
MS.gene24137.t1 AT4G38670 62.605 238 88 1 21 257 1 238 3.40e-108 316
MS.gene24137.t1 AT2G17860 62.857 245 86 4 13 253 9 252 3.17e-107 313
MS.gene24137.t1 AT4G38660 62.109 256 88 5 17 272 20 266 3.57e-102 304
MS.gene24137.t1 AT4G38660 62.302 252 86 5 21 272 2 244 5.10e-101 300
MS.gene24137.t1 AT4G24180 56.584 281 108 5 3 275 7 281 3.56e-99 295
MS.gene24137.t1 AT4G24180 56.272 279 107 5 3 275 7 276 3.95e-98 292
MS.gene24137.t1 AT4G24180 59.533 257 90 5 3 251 7 257 5.23e-98 290
MS.gene24137.t1 AT5G38280 54.373 263 113 4 13 269 11 272 1.76e-97 302
MS.gene24137.t1 AT5G38280 54.373 263 113 4 13 269 11 272 3.96e-97 301
MS.gene24137.t1 AT4G24180 59.216 255 89 5 3 251 7 252 9.98e-97 286
MS.gene24137.t1 AT4G24180 59.307 231 83 3 10 234 16 241 6.39e-89 269
MS.gene24137.t1 AT4G24180 58.696 230 84 3 11 234 12 236 7.48e-88 266
MS.gene24137.t1 AT1G19320 57.831 249 89 9 8 250 9 247 2.50e-87 262
MS.gene24137.t1 AT1G75030 58.667 225 87 6 26 249 23 242 4.12e-84 254
MS.gene24137.t1 AT1G75050 56.962 237 97 5 13 249 11 242 5.07e-84 254
MS.gene24137.t1 AT1G75040 56.846 241 96 6 9 249 6 238 1.38e-83 253
MS.gene24137.t1 AT1G18250 54.464 224 97 4 26 249 20 238 6.17e-80 243
MS.gene24137.t1 AT5G24620 51.639 244 111 5 11 249 9 250 6.64e-80 249
MS.gene24137.t1 AT1G18250 54.464 224 97 4 26 249 21 239 6.65e-80 243
MS.gene24137.t1 AT1G73620 55.357 224 95 4 26 249 41 259 8.68e-80 244
MS.gene24137.t1 AT5G24620 51.639 244 111 5 11 249 64 305 1.38e-79 250
MS.gene24137.t1 AT5G24620 51.639 244 111 5 11 249 85 326 1.68e-79 251
MS.gene24137.t1 AT1G77700 51.304 230 92 9 26 251 60 273 3.23e-70 221
MS.gene24137.t1 AT1G77700 51.327 226 98 8 26 251 60 273 9.07e-70 220
MS.gene24137.t1 AT1G77700 51.327 226 98 8 26 251 88 301 1.38e-69 221
MS.gene24137.t1 AT2G28790 47.107 242 120 7 12 249 36 273 3.53e-67 212
MS.gene24137.t1 AT2G28790 47.107 242 120 7 12 249 11 248 4.62e-67 211
MS.gene24137.t1 AT1G70250 47.083 240 114 6 25 258 143 375 2.16e-65 220
MS.gene24137.t1 AT4G36000 51.389 216 90 6 103 318 1 201 5.11e-65 204
MS.gene24137.t1 AT4G36000 51.389 216 90 6 103 318 1 201 5.11e-65 204
MS.gene24137.t1 AT4G18253 43.443 244 128 4 13 255 9 243 1.28e-64 204
MS.gene24137.t1 AT5G40020 43.200 250 134 6 6 251 4 249 1.20e-63 202
MS.gene24137.t1 AT4G18250 42.909 275 146 6 13 284 42 308 1.01e-62 211
MS.gene24137.t1 AT5G02140 44.177 249 133 6 14 260 7 251 1.66e-61 198
MS.gene24137.t1 AT5G02140 45.798 238 123 6 14 249 7 240 1.01e-60 194
MS.gene24137.t1 AT4G11650 39.506 243 122 8 8 249 4 222 1.88e-49 165
MS.gene24137.t1 AT5G24620 56.667 120 47 3 134 249 15 133 1.24e-37 136
MS.gene24137.t1 AT2G24810 62.195 82 26 3 170 250 116 193 7.76e-27 105

Find 96 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCATGGGGCGGCCGTTTC+TGG -0.083846 1.2:-607231 MS.gene24137:CDS
GCACTTCATTTATCAATTTC+AGG 0.179100 1.2:-607549 MS.gene24137:intron
GCCAGAGCATTCAACCTTTC+CGG 0.211647 1.2:+607144 None:intergenic
CTCATGGGGCGGCCGTTTCT+GGG 0.253028 1.2:-607230 MS.gene24137:CDS
CCAGGGATTCTTTCAAATGC+TGG 0.316773 1.2:-607322 MS.gene24137:CDS
AACAATTGAGAATAAGTAGA+AGG 0.345262 1.2:+606815 None:intergenic
CAGGGATTCTTTCAAATGCT+GGG 0.347178 1.2:-607321 MS.gene24137:CDS
CAGTGGTGGTTTCGCCGGTT+TGG 0.373152 1.2:+607266 None:intergenic
TATTGCTGCAGCGGCGCGTA+TGG 0.373787 1.2:-606857 MS.gene24137:CDS
TTCGATGTTAGTCTTGTTGA+CGG 0.393312 1.2:-607055 MS.gene24137:CDS
GGAAAATTCTCATGTGTAAC+CGG 0.404051 1.2:-607178 MS.gene24137:CDS
TGCACGCAATAGTTTGTGAT+TGG 0.405228 1.2:+605693 None:intergenic
GTCGCCCCTCAGGGCGGCTC+TGG 0.409338 1.2:-607013 MS.gene24137:CDS
TCTCAACGGCGCGTGTCCTT+CGG 0.414761 1.2:-606957 MS.gene24137:CDS
TTAGCATCACTATGGTCCTT+TGG 0.416286 1.2:-605667 MS.gene24137:CDS
GCCTATGCTAGTCGCCCCTC+AGG 0.418663 1.2:-607023 MS.gene24137:CDS
TCCGGAAAGGTTGAATGCTC+TGG 0.437194 1.2:-607145 MS.gene24137:CDS
GTGAATTCGGCTAAAGTTGC+CGG 0.439691 1.2:+607106 None:intergenic
AGAGCCGTCTAATGTGAATT+CGG 0.464663 1.2:+607093 None:intergenic
TGTCACCGCACCAGCCTCAT+GGG 0.466682 1.2:-607245 MS.gene24137:CDS
GTGCATTATTAGCATCACTA+TGG 0.467599 1.2:-605675 MS.gene24137:CDS
ACAGGCTTTGTTCTCCAAAC+CGG 0.470298 1.2:-607280 MS.gene24137:CDS
GTAACCGGCGATTGTGGCTC+CGG 0.470556 1.2:-607163 MS.gene24137:CDS
GTAGAAGGTTTGCAAGTGTC+TGG 0.470850 1.2:+606830 None:intergenic
AAACGGCCGCCCCATGAGGC+TGG 0.484136 1.2:+607235 None:intergenic
CTGTCACCGCACCAGCCTCA+TGG 0.485359 1.2:-607246 MS.gene24137:CDS
CCAGCATTTGAAAGAATCCC+TGG 0.493036 1.2:+607322 None:intergenic
TGTGACTACACAGTGTGGCC+AGG 0.496467 1.2:-607340 MS.gene24137:CDS
GGTGACAGTGGTGGTTTCGC+CGG 0.497671 1.2:+607261 None:intergenic
AAAGAGTTCTGCCCCAGAAA+CGG 0.509995 1.2:+607218 None:intergenic
TCATGGGGCGGCCGTTTCTG+GGG 0.511165 1.2:-607229 MS.gene24137:CDS
GAAGATCTCATTAGAAGAGT+TGG 0.513485 1.2:+605636 None:intergenic
GCATCACTATGGTCCTTTGG+CGG 0.514552 1.2:-605664 MS.gene24137:CDS
AAAGTAACTAACCTTGTGGT+TGG 0.518082 1.2:+606689 None:intergenic
AAGCCTGTGGTTGGAAGTGT+TGG 0.519230 1.2:+607295 None:intergenic
TATCGCCAGAGCCGCCCTGA+GGG 0.521997 1.2:+607008 None:intergenic
CCCTGAGGGGCGACTAGCAT+AGG 0.525025 1.2:+607022 None:intergenic
TCATGTGTAACCGGCGATTG+TGG 0.527231 1.2:-607169 MS.gene24137:CDS
GAATTCACATTAGACGGCTC+TGG 0.528881 1.2:-607091 MS.gene24137:CDS
CTTTGCTCCCAAGACACTGA+TGG 0.532188 1.2:-607199 MS.gene24137:CDS
TTCACATTAGACGGCTCTGG+TGG 0.532251 1.2:-607088 MS.gene24137:CDS
ATTGCTGCAGCGGCGCGTAT+GGG 0.534091 1.2:-606856 MS.gene24137:CDS
GGCGATAATTGCACTACCAC+GGG 0.537099 1.2:-606992 MS.gene24137:CDS
GGCTAAAGTTGCCGGCGGTG+TGG 0.544415 1.2:+607114 None:intergenic
TTCAGTCAAAAGGCAACACA+AGG 0.545590 1.2:-605842 MS.gene24137:intron
ATAGCTATATGCACGTGGGC+AGG 0.548259 1.2:+606784 None:intergenic
CTTAGAGTGATGAGTGTGGA+TGG 0.554333 1.2:-606932 MS.gene24137:CDS
TGGAGAACAAAGCCTGTGGT+TGG 0.555388 1.2:+607286 None:intergenic
CCTATGCTAGTCGCCCCTCA+GGG 0.555587 1.2:-607022 MS.gene24137:CDS
AGGGATTCTTTCAAATGCTG+GGG 0.560190 1.2:-607320 MS.gene24137:CDS
GCCGCCCCATGAGGCTGGTG+CGG 0.562230 1.2:+607240 None:intergenic
GCGCCGCTGCAGCAATACTC+CGG 0.562265 1.2:+606863 None:intergenic
CTTTCCGGAGCCACAATCGC+CGG 0.563498 1.2:+607159 None:intergenic
CGGCGATTGTGGCTCCGGAA+AGG 0.566510 1.2:-607158 MS.gene24137:CDS
GTGACTACACAGTGTGGCCA+GGG 0.569936 1.2:-607339 MS.gene24137:CDS
GTCCCAACACTTCCAACCAC+AGG 0.572652 1.2:-607298 MS.gene24137:CDS
AAGGTTGAATGCTCTGGCAA+CGG 0.576244 1.2:-607139 MS.gene24137:CDS
TTAGCCGAATTCACATTAGA+CGG 0.576825 1.2:-607097 MS.gene24137:CDS
TGGCAACGGAGCCACACCGC+CGG 0.578628 1.2:-607125 MS.gene24137:CDS
TAGTTTGTGATTGGAGCACA+TGG 0.581696 1.2:+605702 None:intergenic
ACCGCACCAGCCTCATGGGG+CGG 0.586044 1.2:-607241 MS.gene24137:CDS
ATGAGTGTGGATGGGAAAGA+CGG 0.592613 1.2:-606923 MS.gene24137:CDS
TGGCGATAATTGCACTACCA+CGG 0.593427 1.2:-606993 MS.gene24137:CDS
CCAGAAACGGCCGCCCCATG+AGG 0.596649 1.2:+607231 None:intergenic
TCACCGGAGTATTGCTGCAG+CGG 0.602026 1.2:-606866 MS.gene24137:CDS
AGAGTTGGCACAACCGCCAA+AGG 0.605702 1.2:+605651 None:intergenic
ATTTGCACAAGTGAAAGTGC+TGG 0.609107 1.2:+606745 None:intergenic
GTCATTGCTAAGCTGAGGTG+AGG 0.611431 1.2:+605784 None:intergenic
TTGGAGCACATGGGTGCACA+TGG 0.612628 1.2:+605712 None:intergenic
TTATCGCCAGAGCCGCCCTG+AGG 0.617214 1.2:+607007 None:intergenic
AGCCTGTGGTTGGAAGTGTT+GGG 0.621679 1.2:+607296 None:intergenic
GACAGTACAATGGTGTATGA+AGG 0.623478 1.2:-605764 MS.gene24137:CDS
TCACATTAGACGGCTCTGGT+GGG 0.623574 1.2:-607087 MS.gene24137:CDS
TGAGGCTGGTGCGGTGACAG+TGG 0.623668 1.2:+607249 None:intergenic
ATTGCTAAGCTGAGGTGAGG+CGG 0.627727 1.2:+605787 None:intergenic
ATCGCCAGAGCCGCCCTGAG+GGG 0.629555 1.2:+607009 None:intergenic
TTAGAGTGATGAGTGTGGAT+GGG 0.630518 1.2:-606931 MS.gene24137:CDS
GTCACCGCACCAGCCTCATG+GGG 0.632870 1.2:-607244 MS.gene24137:CDS
GGCTGGTGCGGTGACAGTGG+TGG 0.635446 1.2:+607252 None:intergenic
TTTGTTCTTCTCCAACCACA+AGG 0.638050 1.2:-606700 MS.gene24137:intron
CTCATCACTCTAAGCTCCGA+AGG 0.638536 1.2:+606941 None:intergenic
AAATTGATAGTGCTTGGTGG+TGG 0.651065 1.2:+607586 None:intergenic
TAAGCATAGCTATATGCACG+TGG 0.665332 1.2:+606779 None:intergenic
GGATGTATCAGTGATCTCAA+CGG 0.673930 1.2:-606971 MS.gene24137:CDS
GAGATCACTGATACATCCCG+TGG 0.679790 1.2:+606976 None:intergenic
ATGCTAGTCGCCCCTCAGGG+CGG 0.689357 1.2:-607019 MS.gene24137:CDS
GCTTAGCAATGACAGTACAA+TGG 0.690106 1.2:-605774 MS.gene24137:CDS
GGTTTGGAGAACAAAGCCTG+TGG 0.698538 1.2:+607282 None:intergenic
GTACTGTCATTGCTAAGCTG+AGG 0.703869 1.2:+605779 None:intergenic
AATTCGGCTAAAGTTGCCGG+CGG 0.706419 1.2:+607109 None:intergenic
TCAGTCAAAAGGCAACACAA+GGG 0.710852 1.2:-605841 MS.gene24137:intron
AGTACAATGGTGTATGAAGG+TGG 0.711202 1.2:-605761 MS.gene24137:CDS
AAGCATAGCTATATGCACGT+GGG 0.721806 1.2:+606780 None:intergenic
GGAGCTTAGAGTGATGAGTG+TGG 0.722376 1.2:-606936 MS.gene24137:CDS
ACAAATGTGACTACACAGTG+TGG 0.729139 1.2:-607345 MS.gene24137:CDS
AGTTTGTGATTGGAGCACAT+GGG 0.759112 1.2:+605703 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATAAGAGACAATT+TGG + chr1.2:605795-605814 None:intergenic 15.0%
!! TAAGATTGATTATATTCAAT+AGG + chr1.2:606627-606646 None:intergenic 15.0%
!!! AACTATAAAATGTTTGTTTT+TGG + chr1.2:605746-605765 None:intergenic 15.0%
!! AATAAATTGTTCAATGAACT+CGG - chr1.2:606791-606810 MS.gene24137:CDS 20.0%
!! GACAAAATTCATTAATCATT+TGG + chr1.2:606767-606786 None:intergenic 20.0%
!! GTACATCAATCAATATAATT+TGG + chr1.2:607155-607174 None:intergenic 20.0%
!! TCATATTAGTTAAGATTTAC+CGG + chr1.2:606650-606669 None:intergenic 20.0%
!! TTGAATATAATCAATCTTAC+CGG - chr1.2:606628-606647 MS.gene24137:intron 20.0%
!!! AGAACAATTTTTCAATGAAT+CGG - chr1.2:606889-606908 MS.gene24137:CDS 20.0%
!!! ATATAATTTGGTTCTAGATA+TGG + chr1.2:607143-607162 None:intergenic 20.0%
!!! GTATTTTATTTTCAGTCAAA+AGG - chr1.2:607388-607407 MS.gene24137:intron 20.0%
!!! TTATATTGATTGATGTACAT+TGG - chr1.2:607157-607176 MS.gene24137:CDS 20.0%
!!! TTTTTACGGTTATTATTTTG+AGG + chr1.2:606589-606608 None:intergenic 20.0%
! AAATAAAGTAACTAACCTTG+TGG + chr1.2:606558-606577 None:intergenic 25.0%
! AACAATTGAGAATAAGTAGA+AGG + chr1.2:606428-606447 None:intergenic 25.0%
! ATAAATTGTTCAATGAACTC+GGG - chr1.2:606792-606811 MS.gene24137:CDS 25.0%
! TCAATAGAAATTGATGCAAA+GGG - chr1.2:606991-607010 MS.gene24137:CDS 25.0%
! TTCAATAGAAATTGATGCAA+AGG - chr1.2:606990-607009 MS.gene24137:CDS 25.0%
! TTTGTGAATATATCATATGC+AGG - chr1.2:605843-605862 MS.gene24137:intron 25.0%
!! ATAAAGTTCATCACACTTTT+TGG + chr1.2:607266-607285 None:intergenic 25.0%
!! TCACAATGTAATTTTCCTAA+CGG + chr1.2:607291-607310 None:intergenic 25.0%
!!! AATGTTTGTTTTTGGTGATT+TGG + chr1.2:605738-605757 None:intergenic 25.0%
!!! ATGAAAAAATTGATAGTGCT+TGG + chr1.2:605663-605682 None:intergenic 25.0%
!!! GCACAATGGTAAATTTTTTA+CGG + chr1.2:606603-606622 None:intergenic 25.0%
ACATTGGATTCGCAAAATAT+GGG - chr1.2:607173-607192 MS.gene24137:CDS 30.0%
GCACTTCATTTATCAATTTC+AGG - chr1.2:605691-605710 MS.gene24137:CDS 30.0%
TACATTGGATTCGCAAAATA+TGG - chr1.2:607172-607191 MS.gene24137:CDS 30.0%
TATATTCAATAGGTGCACAA+TGG + chr1.2:606617-606636 None:intergenic 30.0%
TCCAAAATATCCAATGTGAT+AGG - chr1.2:607094-607113 MS.gene24137:CDS 30.0%
TGAAAAATTGTTCTGCTGTA+AGG + chr1.2:606883-606902 None:intergenic 30.0%
TTATCGTTACACAACACTAT+TGG - chr1.2:607214-607233 MS.gene24137:CDS 30.0%
! ACCTATCACATTGGATATTT+TGG + chr1.2:607098-607117 None:intergenic 30.0%
! CTGTAAGGTAATTTAGAGTT+CGG + chr1.2:606868-606887 None:intergenic 30.0%
! GAGTTTGATTCGATTAGATT+GGG - chr1.2:606700-606719 MS.gene24137:intron 30.0%
!! AAAAAATTGATAGTGCTTGG+TGG + chr1.2:605660-605679 None:intergenic 30.0%
!! ACAATTTTTCAATGAATCGG+AGG - chr1.2:606892-606911 MS.gene24137:CDS 30.0%
!! ACATTCATAACTATTTCTGC+CGG + chr1.2:607067-607086 None:intergenic 30.0%
!! CAATTTTTCAATGAATCGGA+GGG - chr1.2:606893-606912 MS.gene24137:CDS 30.0%
!! CACATTGGATATTTTGGATT+TGG + chr1.2:607092-607111 None:intergenic 30.0%
AAAGTAACTAACCTTGTGGT+TGG + chr1.2:606554-606573 None:intergenic 35.0%
AATTGATTACCCACCAATCA+TGG + chr1.2:606971-606990 None:intergenic 35.0%
ATTGCTTGCAATTGCAAACA+TGG + chr1.2:607020-607039 None:intergenic 35.0%
GGAAAATTCTCATGTGTAAC+CGG - chr1.2:606062-606081 MS.gene24137:intron 35.0%
GTGCATTATTAGCATCACTA+TGG - chr1.2:607565-607584 MS.gene24137:CDS 35.0%
TAGTAGGTGAAGCAACATAA+TGG - chr1.2:607041-607060 MS.gene24137:CDS 35.0%
TGATGAACTTTATGACCGTT+AGG - chr1.2:607273-607292 MS.gene24137:CDS 35.0%
TTAGCCGAATTCACATTAGA+CGG - chr1.2:606143-606162 MS.gene24137:intron 35.0%
! AGAATTTTCCATCAGTGTCT+TGG + chr1.2:606052-606071 None:intergenic 35.0%
! GAATTTTCCATCAGTGTCTT+GGG + chr1.2:606051-606070 None:intergenic 35.0%
! GGAGTTTGATTCGATTAGAT+TGG - chr1.2:606699-606718 MS.gene24137:intron 35.0%
!! ATGCGAAGCTTTTAATTCAC+CGG - chr1.2:606358-606377 MS.gene24137:intron 35.0%
!! TCCGAACTATTGGTTCATAA+GGG + chr1.2:606682-606701 None:intergenic 35.0%
!! TTCGATGTTAGTCTTGTTGA+CGG - chr1.2:606185-606204 MS.gene24137:intron 35.0%
AAGCATAGCTATATGCACGT+GGG + chr1.2:606463-606482 None:intergenic 40.0%
ACAAATGTGACTACACAGTG+TGG - chr1.2:605895-605914 MS.gene24137:intron 40.0%
AGAGCCGTCTAATGTGAATT+CGG + chr1.2:606150-606169 None:intergenic 40.0%
AGGGATTCTTTCAAATGCTG+GGG - chr1.2:605920-605939 MS.gene24137:intron 40.0%
AGTACAATGGTGTATGAAGG+TGG - chr1.2:607479-607498 MS.gene24137:intron 40.0%
AGTTTGTGATTGGAGCACAT+GGG + chr1.2:607540-607559 None:intergenic 40.0%
ATGAACTCGGGTTCGATTAA+TGG - chr1.2:606804-606823 MS.gene24137:CDS 40.0%
CAGGGATTCTTTCAAATGCT+GGG - chr1.2:605919-605938 MS.gene24137:intron 40.0%
CCCCTTATGAACCAATAGTT+CGG - chr1.2:606678-606697 MS.gene24137:intron 40.0%
CGAATCAAACTCCGAACTAT+TGG + chr1.2:606692-606711 None:intergenic 40.0%
GACAGTACAATGGTGTATGA+AGG - chr1.2:607476-607495 MS.gene24137:intron 40.0%
GCAATTGCAAGCAATCTAGT+AGG - chr1.2:607025-607044 MS.gene24137:CDS 40.0%
GCTTAGCAATGACAGTACAA+TGG - chr1.2:607466-607485 MS.gene24137:intron 40.0%
GGATGTATCAGTGATCTCAA+CGG - chr1.2:606269-606288 MS.gene24137:intron 40.0%
TAAGCATAGCTATATGCACG+TGG + chr1.2:606464-606483 None:intergenic 40.0%
TCAGTCAAAAGGCAACACAA+GGG - chr1.2:607399-607418 MS.gene24137:intron 40.0%
TGAACTCGGGTTCGATTAAT+GGG - chr1.2:606805-606824 MS.gene24137:CDS 40.0%
TGTTGTGTAACGATAACCCT+TGG + chr1.2:607210-607229 None:intergenic 40.0%
TTAGAGTGATGAGTGTGGAT+GGG - chr1.2:606309-606328 MS.gene24137:intron 40.0%
TTAGCATCACTATGGTCCTT+TGG - chr1.2:607573-607592 MS.gene24137:CDS 40.0%
TTCAGTCAAAAGGCAACACA+AGG - chr1.2:607398-607417 MS.gene24137:intron 40.0%
TTGGATTCGCAAAATATGGG+TGG - chr1.2:607176-607195 MS.gene24137:CDS 40.0%
TTTGTTCTTCTCCAACCACA+AGG - chr1.2:606540-606559 MS.gene24137:intron 40.0%
! ATTTGCACAAGTGAAAGTGC+TGG + chr1.2:606498-606517 None:intergenic 40.0%
! TAGTTTGTGATTGGAGCACA+TGG + chr1.2:607541-607560 None:intergenic 40.0%
! TGCACGCAATAGTTTGTGAT+TGG + chr1.2:607550-607569 None:intergenic 40.0%
! TTTTAGCCACCATGATTGGT+GGG - chr1.2:606959-606978 MS.gene24137:CDS 40.0%
!! AAATTGATAGTGCTTGGTGG+TGG + chr1.2:605657-605676 None:intergenic 40.0%
!! CCGAACTATTGGTTCATAAG+GGG + chr1.2:606681-606700 None:intergenic 40.0%
!! CTCCGAACTATTGGTTCATA+AGG + chr1.2:606683-606702 None:intergenic 40.0%
!! TGCTTTTTAGCCACCATGAT+TGG - chr1.2:606955-606974 MS.gene24137:CDS 40.0%
!! TTTTTAGCCACCATGATTGG+TGG - chr1.2:606958-606977 MS.gene24137:CDS 40.0%
AAAGAGTTCTGCCCCAGAAA+CGG + chr1.2:606025-606044 None:intergenic 45.0%
AAGGTTGAATGCTCTGGCAA+CGG - chr1.2:606101-606120 MS.gene24137:intron 45.0%
ACCAAGGAGACCTATCACAT+TGG + chr1.2:607107-607126 None:intergenic 45.0%
AGGTGAAGCAACATAATGGC+CGG - chr1.2:607045-607064 MS.gene24137:CDS 45.0%
ATGAGTGTGGATGGGAAAGA+CGG - chr1.2:606317-606336 MS.gene24137:intron 45.0%
CCAGCATTTGAAAGAATCCC+TGG + chr1.2:605921-605940 None:intergenic 45.0%
CCAGGGATTCTTTCAAATGC+TGG - chr1.2:605918-605937 MS.gene24137:intron 45.0%
CTTAGAGTGATGAGTGTGGA+TGG - chr1.2:606308-606327 MS.gene24137:intron 45.0%
GAATTCACATTAGACGGCTC+TGG - chr1.2:606149-606168 MS.gene24137:intron 45.0%
GTACTGTCATTGCTAAGCTG+AGG + chr1.2:607464-607483 None:intergenic 45.0%
GTAGAAGGTTTGCAAGTGTC+TGG + chr1.2:606413-606432 None:intergenic 45.0%
GTGAATTCGGCTAAAGTTGC+CGG + chr1.2:606137-606156 None:intergenic 45.0%
TCCAATGTGATAGGTCTCCT+TGG - chr1.2:607103-607122 MS.gene24137:CDS 45.0%
TGATTACCCACCAATCATGG+TGG + chr1.2:606968-606987 None:intergenic 45.0%
TGGCGATAATTGCACTACCA+CGG - chr1.2:606247-606266 MS.gene24137:intron 45.0%
! TAATTTAGAGTTCGGTCGCG+AGG + chr1.2:606860-606879 None:intergenic 45.0%
!! ACAGGCTTTGTTCTCCAAAC+CGG - chr1.2:605960-605979 MS.gene24137:intron 45.0%
AATTCGGCTAAAGTTGCCGG+CGG + chr1.2:606134-606153 None:intergenic 50.0%
ATAGCTATATGCACGTGGGC+AGG + chr1.2:606459-606478 None:intergenic 50.0%
ATTGCTAAGCTGAGGTGAGG+CGG + chr1.2:607456-607475 None:intergenic 50.0%
CTCATCACTCTAAGCTCCGA+AGG + chr1.2:606302-606321 None:intergenic 50.0%
CTTTGCTCCCAAGACACTGA+TGG - chr1.2:606041-606060 MS.gene24137:intron 50.0%
GAGATCACTGATACATCCCG+TGG + chr1.2:606267-606286 None:intergenic 50.0%
GCATCACTATGGTCCTTTGG+CGG - chr1.2:607576-607595 MS.gene24137:CDS 50.0%
GGAGCTTAGAGTGATGAGTG+TGG - chr1.2:606304-606323 MS.gene24137:intron 50.0%
GGCGATAATTGCACTACCAC+GGG - chr1.2:606248-606267 MS.gene24137:intron 50.0%
GGTTTGGAGAACAAAGCCTG+TGG + chr1.2:605961-605980 None:intergenic 50.0%
GTCATTGCTAAGCTGAGGTG+AGG + chr1.2:607459-607478 None:intergenic 50.0%
GTCTCCTTGGTCAGGTACTA+GGG - chr1.2:607116-607135 MS.gene24137:CDS 50.0%
TCATGTGTAACCGGCGATTG+TGG - chr1.2:606071-606090 MS.gene24137:intron 50.0%
TCCGGAAAGGTTGAATGCTC+TGG - chr1.2:606095-606114 MS.gene24137:intron 50.0%
TGGAGAACAAAGCCTGTGGT+TGG + chr1.2:605957-605976 None:intergenic 50.0%
TGTGATAGGTCTCCTTGGTC+AGG - chr1.2:607108-607127 MS.gene24137:CDS 50.0%
! AAGCCTGTGGTTGGAAGTGT+TGG + chr1.2:605948-605967 None:intergenic 50.0%
! GCCAGAGCATTCAACCTTTC+CGG + chr1.2:606099-606118 None:intergenic 50.0%
! TCACATTAGACGGCTCTGGT+GGG - chr1.2:606153-606172 MS.gene24137:intron 50.0%
! TTCACATTAGACGGCTCTGG+TGG - chr1.2:606152-606171 MS.gene24137:intron 50.0%
!! AGCCTGTGGTTGGAAGTGTT+GGG + chr1.2:605947-605966 None:intergenic 50.0%
AGAGTTGGCACAACCGCCAA+AGG + chr1.2:607592-607611 None:intergenic 55.0%
ATGGGTGGCACACATGCCAA+GGG - chr1.2:607191-607210 MS.gene24137:CDS 55.0%
GGTCTCCTTGGTCAGGTACT+AGG - chr1.2:607115-607134 MS.gene24137:CDS 55.0%
GTCCCAACACTTCCAACCAC+AGG - chr1.2:605942-605961 MS.gene24137:intron 55.0%
GTGACTACACAGTGTGGCCA+GGG - chr1.2:605901-605920 MS.gene24137:intron 55.0%
TATGGGTGGCACACATGCCA+AGG - chr1.2:607190-607209 MS.gene24137:CDS 55.0%
TGGTCCCTAGTACCTGACCA+AGG + chr1.2:607123-607142 None:intergenic 55.0%
TGTGACTACACAGTGTGGCC+AGG - chr1.2:605900-605919 MS.gene24137:intron 55.0%
TTGGAGCACATGGGTGCACA+TGG + chr1.2:607531-607550 None:intergenic 55.0%
!! TCACCGGAGTATTGCTGCAG+CGG - chr1.2:606374-606393 MS.gene24137:intron 55.0%
ATTGCTGCAGCGGCGCGTAT+GGG - chr1.2:606384-606403 MS.gene24137:intron 60.0%
CCTATGCTAGTCGCCCCTCA+GGG - chr1.2:606218-606237 MS.gene24137:intron 60.0%
CTTTCCGGAGCCACAATCGC+CGG + chr1.2:606084-606103 None:intergenic 60.0%
GGTGACAGTGGTGGTTTCGC+CGG + chr1.2:605982-606001 None:intergenic 60.0%
GTAACCGGCGATTGTGGCTC+CGG - chr1.2:606077-606096 MS.gene24137:intron 60.0%
TATTGCTGCAGCGGCGCGTA+TGG - chr1.2:606383-606402 MS.gene24137:intron 60.0%
TCTCAACGGCGCGTGTCCTT+CGG - chr1.2:606283-606302 MS.gene24137:intron 60.0%
TGTCACCGCACCAGCCTCAT+GGG - chr1.2:605995-606014 MS.gene24137:intron 60.0%
! CAGTGGTGGTTTCGCCGGTT+TGG + chr1.2:605977-605996 None:intergenic 60.0%
ATGCTAGTCGCCCCTCAGGG+CGG - chr1.2:606221-606240 MS.gene24137:intron 65.0%
CCCTGAGGGGCGACTAGCAT+AGG + chr1.2:606221-606240 None:intergenic 65.0%
CGGCGATTGTGGCTCCGGAA+AGG - chr1.2:606082-606101 MS.gene24137:intron 65.0%
CTCATGGGGCGGCCGTTTCT+GGG - chr1.2:606010-606029 MS.gene24137:intron 65.0%
CTGTCACCGCACCAGCCTCA+TGG - chr1.2:605994-606013 MS.gene24137:intron 65.0%
GCCTATGCTAGTCGCCCCTC+AGG - chr1.2:606217-606236 MS.gene24137:intron 65.0%
GCGCCGCTGCAGCAATACTC+CGG + chr1.2:606380-606399 None:intergenic 65.0%
GGCTAAAGTTGCCGGCGGTG+TGG + chr1.2:606129-606148 None:intergenic 65.0%
GTCACCGCACCAGCCTCATG+GGG - chr1.2:605996-606015 MS.gene24137:intron 65.0%
TATCGCCAGAGCCGCCCTGA+GGG + chr1.2:606235-606254 None:intergenic 65.0%
TCATGGGGCGGCCGTTTCTG+GGG - chr1.2:606011-606030 MS.gene24137:intron 65.0%
TGAGGCTGGTGCGGTGACAG+TGG + chr1.2:605994-606013 None:intergenic 65.0%
TTATCGCCAGAGCCGCCCTG+AGG + chr1.2:606236-606255 None:intergenic 65.0%
AAACGGCCGCCCCATGAGGC+TGG + chr1.2:606008-606027 None:intergenic 70.0%
ACCGCACCAGCCTCATGGGG+CGG - chr1.2:605999-606018 MS.gene24137:intron 70.0%
ATCGCCAGAGCCGCCCTGAG+GGG + chr1.2:606234-606253 None:intergenic 70.0%
CCAGAAACGGCCGCCCCATG+AGG + chr1.2:606012-606031 None:intergenic 70.0%
CCTCATGGGGCGGCCGTTTC+TGG - chr1.2:606009-606028 MS.gene24137:intron 70.0%
GGCTGGTGCGGTGACAGTGG+TGG + chr1.2:605991-606010 None:intergenic 70.0%
TGGCAACGGAGCCACACCGC+CGG - chr1.2:606115-606134 MS.gene24137:intron 70.0%
GCCGCCCCATGAGGCTGGTG+CGG + chr1.2:606003-606022 None:intergenic 75.0%
! GTCGCCCCTCAGGGCGGCTC+TGG - chr1.2:606227-606246 MS.gene24137:intron 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 605646 607616 605646 ID=MS.gene24137
chr1.2 mRNA 605646 607616 605646 ID=MS.gene24137.t1;Parent=MS.gene24137
chr1.2 exon 607550 607616 607550 ID=MS.gene24137.t1.exon1;Parent=MS.gene24137.t1
chr1.2 CDS 607550 607616 607550 ID=cds.MS.gene24137.t1;Parent=MS.gene24137.t1
chr1.2 exon 606701 607397 606701 ID=MS.gene24137.t1.exon2;Parent=MS.gene24137.t1
chr1.2 CDS 606701 607397 606701 ID=cds.MS.gene24137.t1;Parent=MS.gene24137.t1
chr1.2 exon 605646 605859 605646 ID=MS.gene24137.t1.exon3;Parent=MS.gene24137.t1
chr1.2 CDS 605646 605859 605646 ID=cds.MS.gene24137.t1;Parent=MS.gene24137.t1
Gene Sequence

>MS.gene24137

ATGGATCACCACCACCAAGCACTATCAATTTTTTCATTCTTACTAGCACTTCATTTATCAATTTCAGGTAAGTTTACAATTTAATTAAACCAAATCACCAAAAACAAACATTTTATAGTTCATAATGTTTCGATATTTTTTGTTGACCAAATTGTCTCTTATATTTAATATGTAGAGTATGATTTAATCTAATTAATTTTGTGAATATATCATATGCAGGTGTAATTTCAACAACATTCACATTTGTTAACAAATGTGACTACACAGTGTGGCCAGGGATTCTTTCAAATGCTGGGGTCCCAACACTTCCAACCACAGGCTTTGTTCTCCAAACCGGCGAAACCACCACTGTCACCGCACCAGCCTCATGGGGCGGCCGTTTCTGGGGCAGAACTCTTTGCTCCCAAGACACTGATGGAAAATTCTCATGTGTAACCGGCGATTGTGGCTCCGGAAAGGTTGAATGCTCTGGCAACGGAGCCACACCGCCGGCAACTTTAGCCGAATTCACATTAGACGGCTCTGGTGGGCTTGACTTCTTCGATGTTAGTCTTGTTGACGGTTACAATGTGCCTATGCTAGTCGCCCCTCAGGGCGGCTCTGGCGATAATTGCACTACCACGGGATGTATCAGTGATCTCAACGGCGCGTGTCCTTCGGAGCTTAGAGTGATGAGTGTGGATGGGAAAGACGGTGTCGCGTGTAAGAGCGCATGCGAAGCTTTTAATTCACCGGAGTATTGCTGCAGCGGCGCGTATGGGACACCAGACACTTGCAAACCTTCTACTTATTCTCAATTGTTTAAGAACGCCTGCCCACGTGCATATAGCTATGCTTATGATGATAAGACCAGCACTTTCACTTGTGCAAATGCAGTAGATTATACTATCACATTTTGTTCTTCTCCAACCACAAGGTTAGTTACTTTATTTTTACTTCTCCTCAAAATAATAACCGTAAAAAATTTACCATTGTGCACCTATTGAATATAATCAATCTTACCGGTAAATCTTAACTAATATGATGATTCAACCCCTTATGAACCAATAGTTCGGAGTTTGATTCGATTAGATTGGGTAATGTATACAAGTGTTCTTTGTTTAGTAAAGTAGATCAAACCAAATGATTAATGAATTTTGTCAAATAATAAATTGTTCAATGAACTCGGGTTCGATTAATGGGTGAAACAATTTTTTATCTGTTATAATTTACCTCGCGACCGAACTCTAAATTACCTTACAGCAGAACAATTTTTCAATGAATCGGAGGGTTAATAGAACAAAAAAAGAATAACGATTTAATAGATGTTTGCTTTTTAGCCACCATGATTGGTGGGTAATCAATTTCAATAGAAATTGATGCAAAGGGAAACCATGTTTGCAATTGCAAGCAATCTAGTAGGTGAAGCAACATAATGGCCGGCAGAAATAGTTATGAATGTCACCAAATCCAAAATATCCAATGTGATAGGTCTCCTTGGTCAGGTACTAGGGACCATATCTAGAACCAAATTATATTGATTGATGTACATTGGATTCGCAAAATATGGGTGGCACACATGCCAAGGGTTATCGTTACACAACACTATTGGTAATATGTCTACATCAAAATAAGTTACCAAAAAGTGTGATGAACTTTATGACCGTTAGGAAAATTACATTGTGACTCTTATTTTACATGTGATATTGTTATGTCTATTGTTGCATTTTGATTTTTTTTAGATTTTTGATCATTTTTCTGTTGTATTTTATTTTCAGTCAAAAGGCAACACAAGGGCAAGACACAAAACAAGAAAGTTCTTCTAACTCCGCCTCACCTCAGCTTAGCAATGACAGTACAATGGTGTATGAAGGTGGTATTGATCAAAGTGAAATTTCACAAGCCATGTGCACCCATGTGCTCCAATCACAAACTATTGCGTGCATTATTAGCATCACTATGGTCCTTTGGCGGTTGTGCCAACTCTTCTAA
Protein sequence

>MS.gene24137.t1

MDHHHQALSIFSFLLALHLSISGVISTTFTFVNKCDYTVWPGILSNAGVPTLPTTGFVLQTGETTTVTAPASWGGRFWGRTLCSQDTDGKFSCVTGDCGSGKVECSGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNVPMLVAPQGGSGDNCTTTGCISDLNGACPSELRVMSVDGKDGVACKSACEAFNSPEYCCSGAYGTPDTCKPSTYSQLFKNACPRAYSYAYDDKTSTFTCANAVDYTITFCSSPTTSQKATQGQDTKQESSSNSASPQLSNDSTMVYEGGIDQSEISQAMCTHVLQSQTIACIISITMVLWRLCQLF