Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24312.t1 | XP_013466057.1 | 96 | 226 | 9 | 0 | 1 | 226 | 1 | 226 | 1.10E-115 | 426 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24312.t1 | A0A072VE50 | 96.0 | 226 | 9 | 0 | 1 | 226 | 1 | 226 | 7.8e-116 | 426.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene24312 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene24312 | 0.818089 | 2.35E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene24312 | 0.821664 | 3.58E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene24312 | 0.810398 | 1.18E-50 | -1.69E-46 |
| MS.gene050201 | MS.gene24312 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene24312 | 0.809965 | 1.46E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene24312 | 0.843286 | 1.54E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene24312 | 0.835211 | 1.92E-56 | -1.69E-46 |
| MS.gene052133 | MS.gene24312 | 0.805698 | 1.18E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene24312 | 0.806006 | 1.01E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene24312 | 0.822921 | 1.83E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene24312 | 0.806933 | 6.47E-50 | -1.69E-46 |
| MS.gene053597 | MS.gene24312 | 0.835346 | 1.77E-56 | -1.69E-46 |
| MS.gene053599 | MS.gene24312 | 0.837921 | 3.91E-57 | -1.69E-46 |
| MS.gene053678 | MS.gene24312 | 0.802712 | 4.92E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene24312 | 0.808993 | 2.36E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene24312 | 0.809136 | 2.20E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene24312 | 0.807927 | 3.98E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene24312 | 0.802111 | 6.55E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene24312 | 0.807595 | 4.68E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene24312 | 0.8131 | 3.04E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene24312 | 0.826187 | 3.11E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24312.t1 | MTR_1g021970 | 98.230 | 226 | 4 | 0 | 1 | 226 | 1 | 226 | 1.33e-165 | 456 |
| MS.gene24312.t1 | MTR_1g021970 | 97.788 | 226 | 4 | 1 | 1 | 226 | 1 | 225 | 4.25e-163 | 449 |
| MS.gene24312.t1 | MTR_3g111670 | 83.190 | 232 | 32 | 4 | 1 | 226 | 1 | 231 | 1.19e-134 | 377 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24312.t1 | AT1G19330 | 77.729 | 229 | 46 | 4 | 1 | 226 | 1 | 227 | 2.92e-112 | 322 |
| MS.gene24312.t1 | AT1G19330 | 76.496 | 234 | 45 | 5 | 1 | 226 | 1 | 232 | 1.81e-110 | 317 |
| MS.gene24312.t1 | AT1G19330 | 71.915 | 235 | 55 | 6 | 1 | 226 | 1 | 233 | 1.65e-109 | 315 |
| MS.gene24312.t1 | AT1G75060 | 70.046 | 217 | 61 | 4 | 11 | 224 | 17 | 232 | 1.62e-100 | 291 |
| MS.gene24312.t1 | AT1G75060 | 69.585 | 217 | 61 | 5 | 11 | 224 | 17 | 231 | 1.19e-98 | 287 |
| MS.gene24312.t1 | AT1G75060 | 69.714 | 175 | 49 | 4 | 11 | 182 | 17 | 190 | 1.23e-73 | 222 |
Find 55 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCAAAGTTGTTGTTAC+TGG | 0.247333 | 1.1:+2460724 | MS.gene24312:CDS |
| GAAGGTTGACTTGAGCAAAT+TGG | 0.273443 | 1.1:+2462054 | MS.gene24312:intron |
| CCTAATGATCTAAGCATTCT+TGG | 0.306623 | 1.1:-2461842 | None:intergenic |
| CATTTGGCATGGATCAGATA+TGG | 0.313436 | 1.1:+2461686 | MS.gene24312:CDS |
| AGCTGCTCTTTCGATGGGTT+TGG | 0.323968 | 1.1:-2462209 | None:intergenic |
| CCAAGAATGCTTAGATCATT+AGG | 0.330483 | 1.1:+2461842 | MS.gene24312:CDS |
| GATGAGTTGCAAGTTATTAG+AGG | 0.336175 | 1.1:+2462756 | MS.gene24312:CDS |
| TTGGTCTTGGTGGTTGGCAT+TGG | 0.389653 | 1.1:+2460803 | MS.gene24312:CDS |
| TCTTGGTGGTTGGCATTGGC+TGG | 0.391104 | 1.1:+2460807 | MS.gene24312:CDS |
| CTCTGTTGATTCACAGTCCA+AGG | 0.394816 | 1.1:+2461895 | MS.gene24312:CDS |
| TTGAATTTGAAAATACCATT+TGG | 0.400895 | 1.1:+2461670 | MS.gene24312:CDS |
| TGTCTGCATTGTGGAGATAT+TGG | 0.404430 | 1.1:+2462080 | MS.gene24312:CDS |
| TGGAAATAACCGTACTAAAT+CGG | 0.406762 | 1.1:+2460744 | MS.gene24312:CDS |
| TCGGTTCTTGTTGGTCTTCG+TGG | 0.407495 | 1.1:+2460763 | MS.gene24312:CDS |
| TCAAAGCTGCAAAGAGGCTT+AGG | 0.412016 | 1.1:+2462784 | MS.gene24312:CDS |
| GTTAAGAAAGCTGTTGGTCT+TGG | 0.432909 | 1.1:+2460790 | MS.gene24312:CDS |
| ATTGAAAATGTTGGAAGCAA+TGG | 0.458146 | 1.1:+2460615 | None:intergenic |
| ATTTCCAGTAACAACAACTT+TGG | 0.459498 | 1.1:-2460728 | None:intergenic |
| CGTACTAAATCGGTTCTTGT+TGG | 0.461204 | 1.1:+2460754 | MS.gene24312:CDS |
| AAGAAAGCTGTTGGTCTTGG+TGG | 0.462904 | 1.1:+2460793 | MS.gene24312:CDS |
| CATTCTTGGCCTTGATCTGT+AGG | 0.480531 | 1.1:-2461828 | None:intergenic |
| GGGGTCAATTTCTATGCCTC+AGG | 0.490949 | 1.1:+2461916 | MS.gene24312:CDS |
| TTTGAAAATACCATTTGGCA+TGG | 0.493311 | 1.1:+2461675 | MS.gene24312:CDS |
| CAGCTTCACTTCAATACCAT+TGG | 0.494520 | 1.1:-2461589 | None:intergenic |
| AGGCATAGAAATTGACCCCT+TGG | 0.495573 | 1.1:-2461912 | None:intergenic |
| CTACGAGCTGCTCTTTCGAT+GGG | 0.498457 | 1.1:-2462214 | None:intergenic |
| GTCATCATCTTCCTCGAGAC+CGG | 0.503122 | 1.1:-2461646 | None:intergenic |
| TCTACGAGCTGCTCTTTCGA+TGG | 0.503645 | 1.1:-2462215 | None:intergenic |
| TCTGTTGATTCACAGTCCAA+GGG | 0.503809 | 1.1:+2461896 | MS.gene24312:CDS |
| CACAAAAGTCCTACAGATCA+AGG | 0.510418 | 1.1:+2461819 | MS.gene24312:CDS |
| CATATCTGATCCATGCCAAA+TGG | 0.515981 | 1.1:-2461685 | None:intergenic |
| ATTTGGCATGGATCAGATAT+GGG | 0.529722 | 1.1:+2461687 | MS.gene24312:CDS |
| AGTGTGATTGAACCACCAAC+CGG | 0.537912 | 1.1:+2461627 | MS.gene24312:CDS |
| TTCTATGCCTCAGGAGTGGA+CGG | 0.540848 | 1.1:+2461925 | MS.gene24312:CDS |
| TCAGAGGCATTTCATGTCGC+AGG | 0.548273 | 1.1:+2462244 | MS.gene24312:CDS |
| AAGCTGCAAAGAGGCTTAGG+AGG | 0.549495 | 1.1:+2462787 | MS.gene24312:CDS |
| CAACAAGAACCGATTTAGTA+CGG | 0.559704 | 1.1:-2460753 | None:intergenic |
| TCTTCCTCGAGACCGGTTGG+TGG | 0.561538 | 1.1:-2461639 | None:intergenic |
| ATATTGGCGACACTTCAATC+TGG | 0.569350 | 1.1:+2462096 | MS.gene24312:CDS |
| AAGCTGTTGGTCTTGGTGGT+TGG | 0.570137 | 1.1:+2460797 | MS.gene24312:CDS |
| AATGTGCAGGTTCTTACCAA+TGG | 0.571599 | 1.1:+2461573 | MS.gene24312:intron |
| TCATCTTCCTCGAGACCGGT+TGG | 0.582498 | 1.1:-2461642 | None:intergenic |
| GCAATGGAAAGTTCAGTGAA+TGG | 0.583506 | 1.1:+2460631 | MS.gene24312:CDS |
| GGTGTTGTTAAGAAAGCTGT+TGG | 0.600631 | 1.1:+2460784 | MS.gene24312:CDS |
| TGAACCACCAACCGGTCTCG+AGG | 0.615263 | 1.1:+2461635 | MS.gene24312:CDS |
| GTATTGAAGTGAAGCTGCAG+AGG | 0.621922 | 1.1:+2461595 | MS.gene24312:CDS |
| GGACTGTGAATCAACAGAGA+AGG | 0.625537 | 1.1:-2461891 | None:intergenic |
| CAATTTCTATGCCTCAGGAG+TGG | 0.629224 | 1.1:+2461921 | MS.gene24312:CDS |
| GATTTGTCAAAGCTGCAAAG+AGG | 0.634961 | 1.1:+2462778 | MS.gene24312:CDS |
| ATGGAAAGTTCAGTGAATGG+TGG | 0.641018 | 1.1:+2460634 | MS.gene24312:CDS |
| AGCTCGTAGATGTTGTTCAG+AGG | 0.657397 | 1.1:+2462228 | MS.gene24312:CDS |
| ATATATACCGTCCACTCCTG+AGG | 0.658425 | 1.1:-2461932 | None:intergenic |
| AATTGGAAATGTCTGCATTG+TGG | 0.659073 | 1.1:+2462071 | MS.gene24312:CDS |
| CTGTTGATTCACAGTCCAAG+GGG | 0.680824 | 1.1:+2461897 | MS.gene24312:CDS |
| ACAACAACTTTGGTATGACG+AGG | 0.693978 | 1.1:-2460718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTCATATTTTATT+TGG | + | chr1.1:2461440-2461459 | MS.gene24312:intron | 10.0% |
| !!! | AATTATACATTTTTAAGTAT+TGG | + | chr1.1:2461045-2461064 | MS.gene24312:intron | 10.0% |
| !!! | ATTATACATTTTTAAGTATT+GGG | + | chr1.1:2461046-2461065 | MS.gene24312:intron | 10.0% |
| !!! | ATTTTTTTTATCATCAAAAT+TGG | + | chr1.1:2460850-2460869 | MS.gene24312:intron | 10.0% |
| !!! | TTTGAAAATATTTAATTTTG+AGG | - | chr1.1:2462570-2462589 | None:intergenic | 10.0% |
| !!! | AGATTTTTACTCTTAAAAAT+AGG | - | chr1.1:2461323-2461342 | None:intergenic | 15.0% |
| !! | AATGGAGCTTAATTTATTTA+TGG | + | chr1.1:2461114-2461133 | MS.gene24312:intron | 20.0% |
| !! | TAAGAGTAAAAATCTTTACT+TGG | + | chr1.1:2461328-2461347 | MS.gene24312:intron | 20.0% |
| !! | TAAGCTTAAACATCAAAATT+GGG | + | chr1.1:2462167-2462186 | MS.gene24312:intron | 20.0% |
| !! | TAGGAAAGATTGAATAAAAT+AGG | - | chr1.1:2461304-2461323 | None:intergenic | 20.0% |
| !! | TATTGTTGTGGAAAAAAAAT+TGG | + | chr1.1:2461070-2461089 | MS.gene24312:intron | 20.0% |
| !! | TTGAATTTGAAAATACCATT+TGG | + | chr1.1:2461670-2461689 | MS.gene24312:CDS | 20.0% |
| !!! | AAATGGTATTTTCAAATTCA+AGG | - | chr1.1:2461671-2461690 | None:intergenic | 20.0% |
| !!! | ATTCAGTAAAATCTTTTACT+AGG | - | chr1.1:2462546-2462565 | None:intergenic | 20.0% |
| !!! | GTTATTTTACGTATCTTTTT+TGG | + | chr1.1:2462126-2462145 | MS.gene24312:intron | 20.0% |
| !!! | TGGAAAAAAAATTGGATTTT+TGG | + | chr1.1:2461078-2461097 | MS.gene24312:intron | 20.0% |
| !!! | TTCAGTAAAATCTTTTACTA+GGG | - | chr1.1:2462545-2462564 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTGTAATTTGAA+TGG | + | chr1.1:2461096-2461115 | MS.gene24312:intron | 20.0% |
| ! | GCTTAATTTATTTATGGATC+TGG | + | chr1.1:2461120-2461139 | MS.gene24312:intron | 25.0% |
| ! | GTAAGCTTAAACATCAAAAT+TGG | + | chr1.1:2462166-2462185 | MS.gene24312:intron | 25.0% |
| ! | TATTGAAAATATCGTGTAGA+AGG | + | chr1.1:2462036-2462055 | MS.gene24312:intron | 25.0% |
| ! | TTCAATTGCTCAATTCATTT+GGG | + | chr1.1:2461013-2461032 | MS.gene24312:intron | 25.0% |
| !! | TCAGTAAAATCTTTTACTAG+GGG | - | chr1.1:2462544-2462563 | None:intergenic | 25.0% |
| !! | TGCTTGATTTTGAATTTTGA+TGG | + | chr1.1:2461181-2461200 | MS.gene24312:intron | 25.0% |
| !!! | TGTTTTGTTTATGAAGCAAA+TGG | + | chr1.1:2462734-2462753 | MS.gene24312:intron | 25.0% |
| ATATGGGTGAGTTTCAATTT+GGG | + | chr1.1:2461703-2461722 | MS.gene24312:intron | 30.0% | |
| ATTTCCAGTAACAACAACTT+TGG | - | chr1.1:2460731-2460750 | None:intergenic | 30.0% | |
| ATTTGGTTGAACATTGTATG+TGG | + | chr1.1:2462337-2462356 | MS.gene24312:intron | 30.0% | |
| CAACCAAATAACATTGTTAC+AGG | - | chr1.1:2462326-2462345 | None:intergenic | 30.0% | |
| CTTCAATTGCTCAATTCATT+TGG | + | chr1.1:2461012-2461031 | MS.gene24312:intron | 30.0% | |
| GGTACATTAATGTTTGCATT+AGG | + | chr1.1:2462265-2462284 | MS.gene24312:intron | 30.0% | |
| GTTCCTGTAACAATGTTATT+TGG | + | chr1.1:2462320-2462339 | MS.gene24312:intron | 30.0% | |
| TGGAAATAACCGTACTAAAT+CGG | + | chr1.1:2460744-2460763 | MS.gene24312:CDS | 30.0% | |
| TTTCTTATACCATTGATGCA+TGG | + | chr1.1:2461520-2461539 | MS.gene24312:intron | 30.0% | |
| TTTGAAAATACCATTTGGCA+TGG | + | chr1.1:2461675-2461694 | MS.gene24312:CDS | 30.0% | |
| ! | AGTAAAATCTTTTACTAGGG+GGG | - | chr1.1:2462542-2462561 | None:intergenic | 30.0% |
| ! | CAGTAAAATCTTTTACTAGG+GGG | - | chr1.1:2462543-2462562 | None:intergenic | 30.0% |
| !! | CAACATTTTCAAAGCTTTGT+TGG | + | chr1.1:2460664-2460683 | MS.gene24312:CDS | 30.0% |
| !! | TAAGTATTGGGTTATTGTTG+TGG | + | chr1.1:2461058-2461077 | MS.gene24312:intron | 30.0% |
| !!! | TTCTCTTCCTTTTGATTTTC+CGG | + | chr1.1:2461747-2461766 | MS.gene24312:intron | 30.0% |
| AACATCAAAATTGGGTATGC+AGG | + | chr1.1:2462175-2462194 | MS.gene24312:intron | 35.0% | |
| AATAACCATCCATGCATCAA+TGG | - | chr1.1:2461532-2461551 | None:intergenic | 35.0% | |
| AATTGGAAATGTCTGCATTG+TGG | + | chr1.1:2462071-2462090 | MS.gene24312:CDS | 35.0% | |
| ATTTGGCATGGATCAGATAT+GGG | + | chr1.1:2461687-2461706 | MS.gene24312:CDS | 35.0% | |
| CACAAACAAAATCAGCAATC+CGG | - | chr1.1:2461769-2461788 | None:intergenic | 35.0% | |
| CCAAGAATGCTTAGATCATT+AGG | + | chr1.1:2461842-2461861 | MS.gene24312:CDS | 35.0% | |
| CCTAATGATCTAAGCATTCT+TGG | - | chr1.1:2461845-2461864 | None:intergenic | 35.0% | |
| GATATGGGTGAGTTTCAATT+TGG | + | chr1.1:2461702-2461721 | MS.gene24312:intron | 35.0% | |
| GATGAGTTGCAAGTTATTAG+AGG | + | chr1.1:2462756-2462775 | MS.gene24312:CDS | 35.0% | |
| TATGTGGTTCCAATCAGATT+TGG | + | chr1.1:2462353-2462372 | MS.gene24312:intron | 35.0% | |
| TTATACCATTGATGCATGGA+TGG | + | chr1.1:2461524-2461543 | MS.gene24312:intron | 35.0% | |
| ! | CAACAAGAACCGATTTAGTA+CGG | - | chr1.1:2460756-2460775 | None:intergenic | 35.0% |
| ! | CATACCAAAGTTGTTGTTAC+TGG | + | chr1.1:2460724-2460743 | MS.gene24312:CDS | 35.0% |
| !! | GATCTTTGCAACTCACTTTT+TGG | + | chr1.1:2461223-2461242 | MS.gene24312:intron | 35.0% |
| !!! | TGCAACTCACTTTTTGGTTT+TGG | + | chr1.1:2461229-2461248 | MS.gene24312:intron | 35.0% |
| AATCAGATTTGGATTCCTCG+TGG | + | chr1.1:2462364-2462383 | MS.gene24312:intron | 40.0% | |
| AATGTGCAGGTTCTTACCAA+TGG | + | chr1.1:2461573-2461592 | MS.gene24312:intron | 40.0% | |
| ACAACAACTTTGGTATGACG+AGG | - | chr1.1:2460721-2460740 | None:intergenic | 40.0% | |
| ACGAGGAATCCAAATCTGAT+TGG | - | chr1.1:2462365-2462384 | None:intergenic | 40.0% | |
| ATATTGGCGACACTTCAATC+TGG | + | chr1.1:2462096-2462115 | MS.gene24312:CDS | 40.0% | |
| ATCAAAATTGGGTATGCAGG+TGG | + | chr1.1:2462178-2462197 | MS.gene24312:intron | 40.0% | |
| ATGGAAAGTTCAGTGAATGG+TGG | + | chr1.1:2460634-2460653 | MS.gene24312:CDS | 40.0% | |
| CACAAAAGTCCTACAGATCA+AGG | + | chr1.1:2461819-2461838 | MS.gene24312:CDS | 40.0% | |
| CAGCAATCCGGAAAATCAAA+AGG | - | chr1.1:2461757-2461776 | None:intergenic | 40.0% | |
| CAGCTTCACTTCAATACCAT+TGG | - | chr1.1:2461592-2461611 | None:intergenic | 40.0% | |
| CATATCTGATCCATGCCAAA+TGG | - | chr1.1:2461688-2461707 | None:intergenic | 40.0% | |
| CATTCACAAAGTCGACACAT+TGG | + | chr1.1:2462401-2462420 | MS.gene24312:intron | 40.0% | |
| CATTTGGCATGGATCAGATA+TGG | + | chr1.1:2461686-2461705 | MS.gene24312:CDS | 40.0% | |
| CGTTTGATGCAAAAATGTGC+AGG | + | chr1.1:2461560-2461579 | MS.gene24312:intron | 40.0% | |
| GATTTGTCAAAGCTGCAAAG+AGG | + | chr1.1:2462778-2462797 | MS.gene24312:CDS | 40.0% | |
| GCAATGGAAAGTTCAGTGAA+TGG | + | chr1.1:2460631-2460650 | MS.gene24312:CDS | 40.0% | |
| TGTCTGCATTGTGGAGATAT+TGG | + | chr1.1:2462080-2462099 | MS.gene24312:CDS | 40.0% | |
| ! | CGTACTAAATCGGTTCTTGT+TGG | + | chr1.1:2460754-2460773 | MS.gene24312:CDS | 40.0% |
| ! | GTTAAGAAAGCTGTTGGTCT+TGG | + | chr1.1:2460790-2460809 | MS.gene24312:CDS | 40.0% |
| !! | GAAGGTTGACTTGAGCAAAT+TGG | + | chr1.1:2462054-2462073 | MS.gene24312:intron | 40.0% |
| !! | GGTGTTGTTAAGAAAGCTGT+TGG | + | chr1.1:2460784-2460803 | MS.gene24312:CDS | 40.0% |
| !! | TCTGTTGATTCACAGTCCAA+GGG | + | chr1.1:2461896-2461915 | MS.gene24312:CDS | 40.0% |
| AGCTCGTAGATGTTGTTCAG+AGG | + | chr1.1:2462228-2462247 | MS.gene24312:CDS | 45.0% | |
| AGGCATAGAAATTGACCCCT+TGG | - | chr1.1:2461915-2461934 | None:intergenic | 45.0% | |
| AGTGTGATTGAACCACCAAC+CGG | + | chr1.1:2461627-2461646 | MS.gene24312:CDS | 45.0% | |
| ATATATACCGTCCACTCCTG+AGG | - | chr1.1:2461935-2461954 | None:intergenic | 45.0% | |
| ATCAGCACATCAGTGATTGC+TGG | - | chr1.1:2462470-2462489 | None:intergenic | 45.0% | |
| CAATTTCTATGCCTCAGGAG+TGG | + | chr1.1:2461921-2461940 | MS.gene24312:CDS | 45.0% | |
| GCAAAATGCGAGCAAACCAA+AGG | - | chr1.1:2462431-2462450 | None:intergenic | 45.0% | |
| GGACTGTGAATCAACAGAGA+AGG | - | chr1.1:2461894-2461913 | None:intergenic | 45.0% | |
| GTATTGAAGTGAAGCTGCAG+AGG | + | chr1.1:2461595-2461614 | MS.gene24312:CDS | 45.0% | |
| TCAAAGCTGCAAAGAGGCTT+AGG | + | chr1.1:2462784-2462803 | MS.gene24312:CDS | 45.0% | |
| TCGACACATTGGTGAACCTT+TGG | + | chr1.1:2462412-2462431 | MS.gene24312:intron | 45.0% | |
| ! | GTGTGTAATTTGTGACCACG+AGG | - | chr1.1:2462382-2462401 | None:intergenic | 45.0% |
| ! | TCTTTTACTAGGGGGGAGAT+TGG | - | chr1.1:2462535-2462554 | None:intergenic | 45.0% |
| !! | AAGAAAGCTGTTGGTCTTGG+TGG | + | chr1.1:2460793-2460812 | MS.gene24312:CDS | 45.0% |
| !! | CATTCTTGGCCTTGATCTGT+AGG | - | chr1.1:2461831-2461850 | None:intergenic | 45.0% |
| !! | CTCTGTTGATTCACAGTCCA+AGG | + | chr1.1:2461895-2461914 | MS.gene24312:CDS | 45.0% |
| !! | CTGTTGATTCACAGTCCAAG+GGG | + | chr1.1:2461897-2461916 | MS.gene24312:CDS | 45.0% |
| !!! | CTTTTTTGGTTGCTGTTGCG+TGG | + | chr1.1:2462140-2462159 | MS.gene24312:intron | 45.0% |
| !!! | AAAATTAAATATTTTCAAAA+TGG | + | chr1.1:2462571-2462590 | MS.gene24312:intron | 5.0% |
| AAGCTGCAAAGAGGCTTAGG+AGG | + | chr1.1:2462787-2462806 | MS.gene24312:CDS | 50.0% | |
| CTACGAGCTGCTCTTTCGAT+GGG | - | chr1.1:2462217-2462236 | None:intergenic | 50.0% | |
| CTGCATGAGATTGTGACTGC+AGG | + | chr1.1:2462494-2462513 | MS.gene24312:intron | 50.0% | |
| GGGGTCAATTTCTATGCCTC+AGG | + | chr1.1:2461916-2461935 | MS.gene24312:CDS | 50.0% | |
| GTCATCATCTTCCTCGAGAC+CGG | - | chr1.1:2461649-2461668 | None:intergenic | 50.0% | |
| TACTAGGGGGGAGATTGGAA+TGG | - | chr1.1:2462530-2462549 | None:intergenic | 50.0% | |
| TCTACGAGCTGCTCTTTCGA+TGG | - | chr1.1:2462218-2462237 | None:intergenic | 50.0% | |
| TTCTATGCCTCAGGAGTGGA+CGG | + | chr1.1:2461925-2461944 | MS.gene24312:CDS | 50.0% | |
| ! | AGCTGCTCTTTCGATGGGTT+TGG | - | chr1.1:2462212-2462231 | None:intergenic | 50.0% |
| ! | GGGGGAGATTGGAATGGATT+TGG | - | chr1.1:2462524-2462543 | None:intergenic | 50.0% |
| !! | AAGCTGTTGGTCTTGGTGGT+TGG | + | chr1.1:2460797-2460816 | MS.gene24312:CDS | 50.0% |
| !! | TCAGAGGCATTTCATGTCGC+AGG | + | chr1.1:2462244-2462263 | MS.gene24312:CDS | 50.0% |
| !! | TCGGTTCTTGTTGGTCTTCG+TGG | + | chr1.1:2460763-2460782 | MS.gene24312:CDS | 50.0% |
| !! | TTGGTCTTGGTGGTTGGCAT+TGG | + | chr1.1:2460803-2460822 | MS.gene24312:CDS | 50.0% |
| TCATCTTCCTCGAGACCGGT+TGG | - | chr1.1:2461645-2461664 | None:intergenic | 55.0% | |
| !! | TCTTGGTGGTTGGCATTGGC+TGG | + | chr1.1:2460807-2460826 | MS.gene24312:CDS | 55.0% |
| TCTTCCTCGAGACCGGTTGG+TGG | - | chr1.1:2461642-2461661 | None:intergenic | 60.0% | |
| TGAACCACCAACCGGTCTCG+AGG | + | chr1.1:2461635-2461654 | MS.gene24312:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 2460622 | 2462824 | 2460622 | ID=MS.gene24312 |
| chr1.1 | mRNA | 2460622 | 2462824 | 2460622 | ID=MS.gene24312.t1;Parent=MS.gene24312 |
| chr1.1 | exon | 2460622 | 2460828 | 2460622 | ID=MS.gene24312.t1.exon1;Parent=MS.gene24312.t1 |
| chr1.1 | CDS | 2460622 | 2460828 | 2460622 | ID=cds.MS.gene24312.t1;Parent=MS.gene24312.t1 |
| chr1.1 | exon | 2461582 | 2461708 | 2461582 | ID=MS.gene24312.t1.exon2;Parent=MS.gene24312.t1 |
| chr1.1 | CDS | 2461582 | 2461708 | 2461582 | ID=cds.MS.gene24312.t1;Parent=MS.gene24312.t1 |
| chr1.1 | exon | 2461807 | 2461946 | 2461807 | ID=MS.gene24312.t1.exon3;Parent=MS.gene24312.t1 |
| chr1.1 | CDS | 2461807 | 2461946 | 2461807 | ID=cds.MS.gene24312.t1;Parent=MS.gene24312.t1 |
| chr1.1 | exon | 2462055 | 2462117 | 2462055 | ID=MS.gene24312.t1.exon4;Parent=MS.gene24312.t1 |
| chr1.1 | CDS | 2462055 | 2462117 | 2462055 | ID=cds.MS.gene24312.t1;Parent=MS.gene24312.t1 |
| chr1.1 | exon | 2462197 | 2462265 | 2462197 | ID=MS.gene24312.t1.exon5;Parent=MS.gene24312.t1 |
| chr1.1 | CDS | 2462197 | 2462265 | 2462197 | ID=cds.MS.gene24312.t1;Parent=MS.gene24312.t1 |
| chr1.1 | exon | 2462750 | 2462824 | 2462750 | ID=MS.gene24312.t1.exon6;Parent=MS.gene24312.t1 |
| chr1.1 | CDS | 2462750 | 2462824 | 2462750 | ID=cds.MS.gene24312.t1;Parent=MS.gene24312.t1 |
| Gene Sequence |
| Protein sequence |
