Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053678.t1 | XP_003608928.1 | 98.5 | 135 | 2 | 0 | 3 | 137 | 341 | 475 | 1.40E-71 | 278.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053678.t1 | Q9S795 | 83.7 | 135 | 22 | 0 | 3 | 137 | 341 | 475 | 4.5e-66 | 251.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053678.t1 | G7JNS2 | 98.5 | 135 | 2 | 0 | 3 | 137 | 341 | 475 | 1.0e-71 | 278.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene053678 | 0.805329 | 1.41E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene053678 | 0.810543 | 1.09E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene053678 | 0.811866 | 5.65E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene053678 | 0.811031 | 8.58E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene053678 | 0.837241 | 5.84E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene053678 | 0.833467 | 5.24E-56 | -1.69E-46 |
| MS.gene052519 | MS.gene053678 | 0.808951 | 2.41E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene053678 | 0.815301 | 9.92E-52 | -1.69E-46 |
| MS.gene053597 | MS.gene053678 | 0.808453 | 3.07E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene053678 | 0.817042 | 4.05E-52 | -1.69E-46 |
| MS.gene053677 | MS.gene053678 | 0.84863 | 5.42E-60 | -1.69E-46 |
| MS.gene053678 | MS.gene054250 | 0.907986 | 2.80E-81 | -1.69E-46 |
| MS.gene053678 | MS.gene057287 | 0.804386 | 2.21E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene060587 | 0.803836 | 2.88E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene062042 | 0.839236 | 1.79E-57 | -1.69E-46 |
| MS.gene053678 | MS.gene062743 | 0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene063752 | 0.822844 | 1.91E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene063753 | 0.825847 | 3.75E-54 | -1.69E-46 |
| MS.gene053678 | MS.gene064185 | 0.806125 | 9.57E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene066196 | 0.809774 | 1.60E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene066335 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene067233 | 0.805663 | 1.20E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene068004 | 0.821377 | 4.17E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene068006 | 0.823601 | 1.27E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene068022 | 0.812259 | 4.64E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene068108 | 0.809041 | 2.30E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene068924 | 0.829332 | 5.46E-55 | -1.69E-46 |
| MS.gene053678 | MS.gene071247 | 0.805893 | 1.07E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene07388 | 0.800719 | 1.26E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene074258 | 0.834064 | 3.72E-56 | -1.69E-46 |
| MS.gene053678 | MS.gene074382 | 0.802792 | 4.74E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene08108 | 0.811189 | 7.93E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene08361 | 0.81454 | 1.46E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene08724 | 0.819081 | 1.40E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene20061 | 0.830126 | 3.50E-55 | -1.69E-46 |
| MS.gene053678 | MS.gene22177 | 0.812303 | 4.54E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene22436 | 0.824274 | 8.82E-54 | -1.69E-46 |
| MS.gene053678 | MS.gene24312 | 0.802712 | 4.92E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene25350 | 0.8159 | 7.29E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene25755 | 0.810221 | 1.28E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene26832 | 0.834342 | 3.17E-56 | -1.69E-46 |
| MS.gene053678 | MS.gene26851 | 0.808296 | 3.32E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene29807 | 0.80991 | 1.50E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene29920 | 0.802635 | 5.11E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene32888 | 0.811306 | 7.48E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene34232 | 0.806542 | 7.82E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene34266 | 0.819818 | 9.51E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene34803 | 0.803284 | 3.75E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene34975 | 0.821435 | 4.04E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene35069 | 0.810709 | 1.01E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene35575 | 0.804576 | 2.02E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene38844 | 0.800443 | 1.44E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene42143 | 0.803287 | 3.75E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene42162 | 0.829024 | 6.49E-55 | -1.69E-46 |
| MS.gene053678 | MS.gene43075 | 0.80721 | 5.65E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene45281 | 0.804327 | 2.28E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene45609 | 0.806105 | 9.67E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene47768 | 0.816987 | 4.16E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene48701 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene52241 | 0.813822 | 2.11E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene52946 | 0.818555 | 1.84E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene56462 | 0.840776 | 7.09E-58 | -1.69E-46 |
| MS.gene053678 | MS.gene56510 | 0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene59241 | 0.820595 | 6.31E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene59242 | 0.820855 | 5.50E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene60710 | 0.812988 | 3.21E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene61133 | 0.801639 | 8.19E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene62423 | 0.800232 | 1.59E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene63032 | 0.803621 | 3.19E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene72008 | 0.801114 | 1.05E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene73016 | 0.80268 | 5.00E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene74758 | 0.800806 | 1.21E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene75003 | 0.803296 | 3.73E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene76034 | 0.815644 | 8.32E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene76314 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene78354 | 0.80135 | 9.39E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene80257 | 0.835911 | 1.27E-56 | -1.69E-46 |
| MS.gene053678 | MS.gene83529 | 0.80071 | 1.27E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene84426 | 0.800652 | 1.30E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene84469 | 0.800565 | 1.36E-48 | -1.69E-46 |
| MS.gene053678 | MS.gene84847 | 0.81875 | 1.67E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene86381 | 0.823524 | 1.32E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene90880 | 0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene95401 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene96083 | 0.817381 | 3.40E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene97238 | 0.813994 | 1.93E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene98394 | 0.839354 | 1.67E-57 | -1.69E-46 |
| MS.gene053678 | MS.gene98699 | 0.803767 | 2.98E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053678.t1 | MTR_4g106510 | 98.519 | 135 | 2 | 0 | 3 | 137 | 341 | 475 | 8.12e-93 | 278 |
| MS.gene053678.t1 | MTR_3g078550 | 83.704 | 135 | 22 | 0 | 3 | 137 | 311 | 445 | 4.91e-81 | 246 |
| MS.gene053678.t1 | MTR_3g078550 | 83.704 | 135 | 22 | 0 | 3 | 137 | 341 | 475 | 1.26e-80 | 246 |
| MS.gene053678.t1 | MTR_3g078490 | 81.481 | 135 | 25 | 0 | 3 | 137 | 371 | 505 | 9.44e-77 | 237 |
| MS.gene053678.t1 | MTR_6g086300 | 43.182 | 132 | 73 | 1 | 3 | 134 | 350 | 479 | 2.61e-35 | 127 |
| MS.gene053678.t1 | MTR_6g086300 | 43.182 | 132 | 73 | 1 | 3 | 134 | 350 | 479 | 2.61e-35 | 127 |
| MS.gene053678.t1 | MTR_8g083520 | 42.424 | 132 | 74 | 1 | 3 | 134 | 229 | 358 | 1.10e-34 | 124 |
| MS.gene053678.t1 | MTR_8g083520 | 42.424 | 132 | 74 | 1 | 3 | 134 | 309 | 438 | 5.04e-34 | 124 |
| MS.gene053678.t1 | MTR_6g086340 | 42.424 | 132 | 74 | 1 | 3 | 134 | 348 | 477 | 5.65e-34 | 124 |
| MS.gene053678.t1 | MTR_8g083530 | 42.424 | 132 | 74 | 1 | 3 | 134 | 351 | 480 | 1.25e-33 | 123 |
| MS.gene053678.t1 | MTR_8g064170 | 42.537 | 134 | 75 | 1 | 3 | 136 | 357 | 488 | 2.16e-30 | 114 |
| MS.gene053678.t1 | MTR_8g064170 | 42.537 | 134 | 75 | 1 | 3 | 136 | 389 | 520 | 2.71e-30 | 114 |
| MS.gene053678.t1 | MTR_3g078170 | 41.791 | 134 | 76 | 1 | 3 | 136 | 390 | 521 | 4.70e-29 | 111 |
| MS.gene053678.t1 | MTR_2g067660 | 42.857 | 133 | 74 | 1 | 5 | 137 | 374 | 504 | 2.94e-27 | 105 |
| MS.gene053678.t1 | MTR_4g107040 | 39.552 | 134 | 79 | 1 | 3 | 136 | 392 | 523 | 5.94e-27 | 105 |
| MS.gene053678.t1 | MTR_2g034160 | 36.765 | 136 | 72 | 4 | 5 | 131 | 381 | 511 | 1.01e-19 | 84.7 |
| MS.gene053678.t1 | MTR_1399s0020 | 36.429 | 140 | 79 | 3 | 1 | 137 | 195 | 327 | 8.85e-19 | 81.3 |
| MS.gene053678.t1 | MTR_2g042330 | 34.266 | 143 | 86 | 4 | 5 | 142 | 350 | 489 | 2.36e-12 | 63.5 |
| MS.gene053678.t1 | MTR_2g009750 | 34.951 | 103 | 62 | 2 | 5 | 106 | 339 | 437 | 8.92e-12 | 62.0 |
| MS.gene053678.t1 | MTR_2g009750 | 34.951 | 103 | 62 | 2 | 5 | 106 | 340 | 438 | 9.01e-12 | 62.0 |
| MS.gene053678.t1 | MTR_2g009750 | 34.286 | 105 | 61 | 3 | 5 | 106 | 340 | 439 | 1.95e-11 | 60.8 |
| MS.gene053678.t1 | MTR_4g093170 | 30.702 | 114 | 75 | 2 | 5 | 115 | 367 | 479 | 4.72e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053678.t1 | AT1G74920 | 83.704 | 135 | 22 | 0 | 3 | 137 | 341 | 475 | 4.99e-82 | 250 |
| MS.gene053678.t1 | AT1G74920 | 83.704 | 135 | 22 | 0 | 3 | 137 | 336 | 470 | 5.28e-82 | 249 |
| MS.gene053678.t1 | AT3G48170 | 78.519 | 135 | 29 | 0 | 3 | 137 | 341 | 475 | 6.10e-77 | 237 |
| MS.gene053678.t1 | AT3G24503 | 46.212 | 132 | 69 | 1 | 3 | 134 | 349 | 478 | 9.61e-35 | 126 |
| MS.gene053678.t1 | AT1G79440 | 45.113 | 133 | 71 | 1 | 5 | 137 | 380 | 510 | 1.95e-28 | 109 |
| MS.gene053678.t1 | AT3G48000 | 39.706 | 136 | 80 | 1 | 1 | 136 | 384 | 517 | 2.42e-28 | 109 |
| MS.gene053678.t1 | AT1G23800 | 38.060 | 134 | 81 | 1 | 3 | 136 | 382 | 513 | 4.10e-28 | 108 |
| MS.gene053678.t1 | AT3G66658 | 36.691 | 139 | 74 | 4 | 5 | 134 | 381 | 514 | 6.47e-20 | 85.5 |
| MS.gene053678.t1 | AT3G66658 | 36.691 | 139 | 74 | 4 | 5 | 134 | 381 | 514 | 6.52e-20 | 85.5 |
| MS.gene053678.t1 | AT2G14170 | 28.000 | 150 | 100 | 4 | 5 | 149 | 439 | 585 | 3.21e-13 | 66.2 |
| MS.gene053678.t1 | AT1G54100 | 33.793 | 145 | 85 | 5 | 3 | 142 | 350 | 488 | 1.75e-12 | 63.9 |
| MS.gene053678.t1 | AT1G54100 | 33.793 | 145 | 85 | 5 | 3 | 142 | 350 | 488 | 1.75e-12 | 63.9 |
| MS.gene053678.t1 | AT2G14170 | 31.858 | 113 | 73 | 2 | 5 | 114 | 330 | 441 | 5.63e-12 | 62.8 |
| MS.gene053678.t1 | AT2G14170 | 31.858 | 113 | 73 | 2 | 5 | 114 | 439 | 550 | 6.44e-12 | 62.4 |
Find 26 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTGATGCAGGCATTTA+AGG | 0.134214 | 5.1:-47633335 | MS.gene053678:intron |
| ATTTGGAAAGAAGAAGTATT+TGG | 0.232708 | 5.1:-47633657 | MS.gene053678:CDS |
| TGACTACTTCCATGCAAATT+TGG | 0.235483 | 5.1:-47633674 | MS.gene053678:CDS |
| GGCATTAAACGTAGTGGTTT+TGG | 0.252055 | 5.1:-47633256 | MS.gene053678:CDS |
| CATTTAAGGCCGAAATAGTA+TGG | 0.301924 | 5.1:-47633321 | MS.gene053678:CDS |
| GCAATTGACCCATACTATTT+CGG | 0.370412 | 5.1:+47633312 | None:intergenic |
| ATGCTTCACTCAAGCGCCAT+GGG | 0.461661 | 5.1:-47633281 | MS.gene053678:CDS |
| GTCCTCTACAGCTATGGCTT+AGG | 0.463601 | 5.1:-47633479 | MS.gene053678:intron |
| GTCACATCAGTTATGATGGT+TGG | 0.495328 | 5.1:+47633693 | None:intergenic |
| TTCTTCTTTCCAAATTTGCA+TGG | 0.496084 | 5.1:+47633665 | None:intergenic |
| CAATGGCAGCATCTAAAGAA+AGG | 0.502314 | 5.1:-47633729 | MS.gene053678:intron |
| AAGATGTGAGCGTGTAACTA+AGG | 0.508552 | 5.1:-47633429 | MS.gene053678:intron |
| CATGCTTCACTCAAGCGCCA+TGG | 0.516509 | 5.1:-47633282 | MS.gene053678:CDS |
| AGTAGTCACATCAGTTATGA+TGG | 0.526637 | 5.1:+47633689 | None:intergenic |
| CATACCATTCTCCTAGTTCA+CGG | 0.538382 | 5.1:+47633233 | None:intergenic |
| TTGGCCGTGAACTAGGAGAA+TGG | 0.556599 | 5.1:-47633237 | MS.gene053678:intron |
| GACTGGTGGGTCTCGACCAG+AGG | 0.561492 | 5.1:-47633832 | MS.gene053678:intron |
| TTCACTCAAGCGCCATGGGG+AGG | 0.564185 | 5.1:-47633277 | MS.gene053678:CDS |
| GTCTCGAACGCTAAGAGTGA+GGG | 0.574738 | 5.1:-47633867 | MS.gene053678:CDS |
| TAGATCAATAGCTTCTTCCT+CGG | 0.596377 | 5.1:+47633605 | None:intergenic |
| TGTCTCGAACGCTAAGAGTG+AGG | 0.614021 | 5.1:-47633868 | MS.gene053678:CDS |
| ATTTAAGGCCGAAATAGTAT+GGG | 0.622761 | 5.1:-47633320 | MS.gene053678:CDS |
| TGGGGAGGCATTAAACGTAG+TGG | 0.638861 | 5.1:-47633262 | MS.gene053678:CDS |
| CTACGTTTAATGCCTCCCCA+TGG | 0.639138 | 5.1:+47633265 | None:intergenic |
| CATGGCGCTTGAGTGAAGCA+TGG | 0.643282 | 5.1:+47633283 | None:intergenic |
| TGCTTCACTCAAGCGCCATG+GGG | 0.659834 | 5.1:-47633280 | MS.gene053678:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAATAAATAAAAAGAT+AGG | + | chr5.1:47633415-47633434 | None:intergenic | 10.0% |
| !!! | TTTGTTTAATATTTTTAACA+GGG | - | chr5.1:47633853-47633872 | MS.gene053678:CDS | 10.0% |
| !!! | TTTTGTTTAATATTTTTAAC+AGG | - | chr5.1:47633852-47633871 | MS.gene053678:CDS | 10.0% |
| !!! | TCTTTTTATTTATTTTTCTC+TGG | - | chr5.1:47633416-47633435 | MS.gene053678:intron | 15.0% |
| !!! | TTGTTTAATATTTTTAACAG+GGG | - | chr5.1:47633854-47633873 | MS.gene053678:CDS | 15.0% |
| !! | AAAAGAAACCCATAATTATA+AGG | - | chr5.1:47633470-47633489 | MS.gene053678:CDS | 20.0% |
| !! | AAATTGGAATTATACATGAT+AGG | - | chr5.1:47633637-47633656 | MS.gene053678:CDS | 20.0% |
| !! | AATAAAAAGATAGGCATTTA+AGG | + | chr5.1:47633406-47633425 | None:intergenic | 20.0% |
| !! | AATTGGAATTATACATGATA+GGG | - | chr5.1:47633638-47633657 | MS.gene053678:CDS | 20.0% |
| !! | ATTAAACAAAATCAGACTTA+AGG | + | chr5.1:47633843-47633862 | None:intergenic | 20.0% |
| !! | CAAAACATAATCAATTATCA+TGG | + | chr5.1:47632824-47632843 | None:intergenic | 20.0% |
| !! | CAAGAAAACAACTAAATAAT+TGG | - | chr5.1:47633193-47633212 | MS.gene053678:intron | 20.0% |
| ! | AGACTTCACCTTATAATTAT+GGG | + | chr5.1:47633481-47633500 | None:intergenic | 25.0% |
| ! | GGTATCTAAGTTATATACTT+TGG | - | chr5.1:47633078-47633097 | MS.gene053678:intron | 25.0% |
| ! | TAGACTTCACCTTATAATTA+TGG | + | chr5.1:47633482-47633501 | None:intergenic | 25.0% |
| !! | ATTATGTTTTGCAAATGCAA+TGG | - | chr5.1:47632833-47632852 | MS.gene053678:intron | 25.0% |
| !!! | ATTTGGAAAGAAGAAGTATT+TGG | - | chr5.1:47632922-47632941 | MS.gene053678:intron | 25.0% |
| ACAGTCAATAAAGCTATGAA+CGG | - | chr5.1:47633583-47633602 | MS.gene053678:intron | 30.0% | |
| TCTGACATTAATACAGGTTT+AGG | + | chr5.1:47633775-47633794 | None:intergenic | 30.0% | |
| TTCTTCTTTCCAAATTTGCA+TGG | + | chr5.1:47632917-47632936 | None:intergenic | 30.0% | |
| ! | AATTCCAATTTTACCATGCA+AGG | + | chr5.1:47633628-47633647 | None:intergenic | 30.0% |
| ! | ATTTAAGGCCGAAATAGTAT+GGG | - | chr5.1:47633259-47633278 | MS.gene053678:CDS | 30.0% |
| ! | TTCATCTGTATACTCTTTTC+CGG | - | chr5.1:47633042-47633061 | MS.gene053678:intron | 30.0% |
| !! | TTATTTTTCTCTGGATGAAG+AGG | - | chr5.1:47633425-47633444 | MS.gene053678:intron | 30.0% |
| ACCTGTATTAATGTCAGATC+TGG | - | chr5.1:47633777-47633796 | MS.gene053678:intron | 35.0% | |
| ACTAAGGTGAGACTGATTAT+AGG | - | chr5.1:47633166-47633185 | MS.gene053678:intron | 35.0% | |
| AGTAGTCACATCAGTTATGA+TGG | + | chr5.1:47632893-47632912 | None:intergenic | 35.0% | |
| ATGTTTCCTTGGTCTGAATT+TGG | - | chr5.1:47633685-47633704 | MS.gene053678:CDS | 35.0% | |
| ATTTGGCATAAAGGGATAGT+TGG | - | chr5.1:47633702-47633721 | MS.gene053678:CDS | 35.0% | |
| CATAAAGGGATAGTTGGATT+GGG | - | chr5.1:47633708-47633727 | MS.gene053678:CDS | 35.0% | |
| CATTCCTTGCATGGTAAAAT+TGG | - | chr5.1:47633621-47633640 | MS.gene053678:CDS | 35.0% | |
| GACTTAAGGTCAAATAAGAC+AGG | + | chr5.1:47633829-47633848 | None:intergenic | 35.0% | |
| GCAATTGACCCATACTATTT+CGG | + | chr5.1:47633270-47633289 | None:intergenic | 35.0% | |
| TAGATCAATAGCTTCTTCCT+CGG | + | chr5.1:47632977-47632996 | None:intergenic | 35.0% | |
| TGACTACTTCCATGCAAATT+TGG | - | chr5.1:47632905-47632924 | MS.gene053678:intron | 35.0% | |
| TGATAGGGATTAACATGTGT+CGG | - | chr5.1:47633653-47633672 | MS.gene053678:CDS | 35.0% | |
| TGGTCTGAATTTGGCATAAA+GGG | - | chr5.1:47633694-47633713 | MS.gene053678:CDS | 35.0% | |
| TTGGTCTGAATTTGGCATAA+AGG | - | chr5.1:47633693-47633712 | MS.gene053678:CDS | 35.0% | |
| TTTATGCCAAATTCAGACCA+AGG | + | chr5.1:47633694-47633713 | None:intergenic | 35.0% | |
| ! | AACGTTTTTACACACAGAAC+AGG | + | chr5.1:47632949-47632968 | None:intergenic | 35.0% |
| ! | AGAAAGCATAATCATACCTC+TGG | + | chr5.1:47632766-47632785 | None:intergenic | 35.0% |
| ! | CATTTAAGGCCGAAATAGTA+TGG | - | chr5.1:47633258-47633277 | MS.gene053678:CDS | 35.0% |
| AAGATGTGAGCGTGTAACTA+AGG | - | chr5.1:47633150-47633169 | MS.gene053678:intron | 40.0% | |
| AGTTTATCTTGCTCTGATGC+AGG | - | chr5.1:47633235-47633254 | MS.gene053678:intron | 40.0% | |
| ATTAATGTCAGATCTGGCGT+GGG | - | chr5.1:47633783-47633802 | MS.gene053678:intron | 40.0% | |
| CAATGGCAGCATCTAAAGAA+AGG | - | chr5.1:47632850-47632869 | MS.gene053678:intron | 40.0% | |
| CATACCATTCTCCTAGTTCA+CGG | + | chr5.1:47633349-47633368 | None:intergenic | 40.0% | |
| GATACCATTCCACAAATGAC+CGG | + | chr5.1:47633064-47633083 | None:intergenic | 40.0% | |
| GCATAAAGGGATAGTTGGAT+TGG | - | chr5.1:47633707-47633726 | MS.gene053678:CDS | 40.0% | |
| GCCAGATCTGACATTAATAC+AGG | + | chr5.1:47633781-47633800 | None:intergenic | 40.0% | |
| GTCACATCAGTTATGATGGT+TGG | + | chr5.1:47632889-47632908 | None:intergenic | 40.0% | |
| TAAGGTGAAGTCTAAGTCTG+TGG | - | chr5.1:47633488-47633507 | MS.gene053678:intron | 40.0% | |
| TATTAATGTCAGATCTGGCG+TGG | - | chr5.1:47633782-47633801 | MS.gene053678:intron | 40.0% | |
| TGTAAAAACGTTTAGCACCG+AGG | - | chr5.1:47632957-47632976 | MS.gene053678:intron | 40.0% | |
| ! | GGCATTAAACGTAGTGGTTT+TGG | - | chr5.1:47633323-47633342 | MS.gene053678:CDS | 40.0% |
| ! | TACTCTTTTCCGGTCATTTG+TGG | - | chr5.1:47633052-47633071 | MS.gene053678:intron | 40.0% |
| ! | TTTTCCGGTCATTTGTGGAA+TGG | - | chr5.1:47633057-47633076 | MS.gene053678:intron | 40.0% |
| ACTTTGGTCCTCTACAGCTA+TGG | - | chr5.1:47633094-47633113 | MS.gene053678:intron | 45.0% | |
| ATGATCACTACACTGTCAGC+AGG | + | chr5.1:47633535-47633554 | None:intergenic | 45.0% | |
| CTATGAACGGATCATGACAC+TGG | - | chr5.1:47633596-47633615 | MS.gene053678:CDS | 45.0% | |
| CTGTGCAAGTGTGTTCAGTT+AGG | - | chr5.1:47632784-47632803 | MS.gene053678:intron | 45.0% | |
| GGCACATTTGCATGTTTCCT+TGG | - | chr5.1:47633674-47633693 | MS.gene053678:CDS | 45.0% | |
| TGATCACTACACTGTCAGCA+GGG | + | chr5.1:47633534-47633553 | None:intergenic | 45.0% | |
| TGCTCTGATGCAGGCATTTA+AGG | - | chr5.1:47633244-47633263 | MS.gene053678:CDS | 45.0% | |
| !!! | GTGCGACAATTTTGACTGGT+GGG | - | chr5.1:47632734-47632753 | MS.gene053678:intron | 45.0% |
| ACACTGGTGCATTCCTTGCA+TGG | - | chr5.1:47633612-47633631 | MS.gene053678:CDS | 50.0% | |
| ATGCTTCACTCAAGCGCCAT+GGG | - | chr5.1:47633298-47633317 | MS.gene053678:CDS | 50.0% | |
| CACCTAAGCCATAGCTGTAG+AGG | + | chr5.1:47633105-47633124 | None:intergenic | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | + | chr5.1:47633317-47633336 | None:intergenic | 50.0% | |
| GTCCTCTACAGCTATGGCTT+AGG | - | chr5.1:47633100-47633119 | MS.gene053678:intron | 50.0% | |
| GTCTCGAACGCTAAGAGTGA+GGG | - | chr5.1:47632712-47632731 | MS.gene053678:intron | 50.0% | |
| TGTCTCGAACGCTAAGAGTG+AGG | - | chr5.1:47632711-47632730 | MS.gene053678:intron | 50.0% | |
| TTGGCCGTGAACTAGGAGAA+TGG | - | chr5.1:47633342-47633361 | MS.gene053678:intron | 50.0% | |
| !! | GAGGGTGCGACAATTTTGAC+TGG | - | chr5.1:47632730-47632749 | MS.gene053678:intron | 50.0% |
| !! | TGGGGAGGCATTAAACGTAG+TGG | - | chr5.1:47633317-47633336 | MS.gene053678:CDS | 50.0% |
| !!! | AGTGGTTTTGGCCGTGAACT+AGG | - | chr5.1:47633335-47633354 | MS.gene053678:intron | 50.0% |
| !!! | GGTGCGACAATTTTGACTGG+TGG | - | chr5.1:47632733-47632752 | MS.gene053678:intron | 50.0% |
| CATGCTTCACTCAAGCGCCA+TGG | - | chr5.1:47633297-47633316 | MS.gene053678:CDS | 55.0% | |
| CATGGCGCTTGAGTGAAGCA+TGG | + | chr5.1:47633299-47633318 | None:intergenic | 55.0% | |
| TGCTTCACTCAAGCGCCATG+GGG | - | chr5.1:47633299-47633318 | MS.gene053678:CDS | 55.0% | |
| TTCACTCAAGCGCCATGGGG+AGG | - | chr5.1:47633302-47633321 | MS.gene053678:CDS | 60.0% | |
| ! | GACTGGTGGGTCTCGACCAG+AGG | - | chr5.1:47632747-47632766 | MS.gene053678:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 47632682 | 47633919 | 47632682 | ID=MS.gene053678 |
| chr5.1 | mRNA | 47632682 | 47633919 | 47632682 | ID=MS.gene053678.t1;Parent=MS.gene053678 |
| chr5.1 | exon | 47633833 | 47633919 | 47633833 | ID=MS.gene053678.t1.exon1;Parent=MS.gene053678.t1 |
| chr5.1 | CDS | 47633833 | 47633919 | 47633833 | ID=cds.MS.gene053678.t1;Parent=MS.gene053678.t1 |
| chr5.1 | exon | 47633591 | 47633742 | 47633591 | ID=MS.gene053678.t1.exon2;Parent=MS.gene053678.t1 |
| chr5.1 | CDS | 47633591 | 47633742 | 47633591 | ID=cds.MS.gene053678.t1;Parent=MS.gene053678.t1 |
| chr5.1 | exon | 47633430 | 47633490 | 47633430 | ID=MS.gene053678.t1.exon3;Parent=MS.gene053678.t1 |
| chr5.1 | CDS | 47633430 | 47633490 | 47633430 | ID=cds.MS.gene053678.t1;Parent=MS.gene053678.t1 |
| chr5.1 | exon | 47633238 | 47633344 | 47633238 | ID=MS.gene053678.t1.exon4;Parent=MS.gene053678.t1 |
| chr5.1 | CDS | 47633238 | 47633344 | 47633238 | ID=cds.MS.gene053678.t1;Parent=MS.gene053678.t1 |
| chr5.1 | exon | 47632682 | 47632727 | 47632682 | ID=MS.gene053678.t1.exon5;Parent=MS.gene053678.t1 |
| chr5.1 | CDS | 47632682 | 47632727 | 47632682 | ID=cds.MS.gene053678.t1;Parent=MS.gene053678.t1 |
| Gene Sequence |
| Protein sequence |
