Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24488.t1 | XP_003589053.1 | 67.8 | 482 | 135 | 4 | 1 | 478 | 1 | 466 | 6.80E-51 | 211.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24488.t1 | G7IBC0 | 67.8 | 482 | 135 | 4 | 1 | 478 | 1 | 466 | 4.9e-51 | 211.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene24488 | 0.805176 | 1.51E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene24488 | 0.800384 | 1.48E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene24488 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene24488 | 0.80427 | 2.34E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene24488 | 0.802832 | 4.65E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene24488 | 0.823142 | 1.62E-53 | -1.69E-46 |
| MS.gene051577 | MS.gene24488 | 0.826945 | 2.05E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene24488 | 0.803878 | 2.82E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene24488 | 0.82427 | 8.84E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene24488 | 0.825019 | 5.89E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene24488 | 0.802137 | 6.47E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene24488 | 0.81442 | 1.56E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene24488 | 0.803865 | 2.84E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene24488 | 0.838803 | 2.31E-57 | -1.69E-46 |
| MS.gene055512 | MS.gene24488 | 0.816933 | 4.28E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene24488 | -0.809848 | 1.54E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene24488 | 0.817833 | 2.69E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene24488 | -0.821402 | 4.12E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene24488 | 0.822737 | 2.02E-53 | -1.69E-46 |
| MS.gene057287 | MS.gene24488 | 0.840589 | 7.94E-58 | -1.69E-46 |
| MS.gene058055 | MS.gene24488 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene058852 | MS.gene24488 | 0.806748 | 7.08E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene24488 | 0.808572 | 2.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24488.t1 | MTR_1g017900 | 75.354 | 495 | 76 | 8 | 1 | 478 | 1 | 466 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 125 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAATGCAACTGATTCT+AGG | 0.201922 | 1.1:+4762155 | MS.gene24488:CDS |
| AAAACAAAAGAGAGTGAAAA+AGG | 0.257941 | 1.1:+4761638 | MS.gene24488:CDS |
| CAGCTCCGGTCACTGATTTC+CGG | 0.280069 | 1.1:-4762114 | None:intergenic |
| GTTTCTAAGTCTAATCATTC+TGG | 0.307209 | 1.1:+4762307 | MS.gene24488:CDS |
| CATGGGCATGGGCATGGGCA+TGG | 0.332395 | 1.1:+4762916 | MS.gene24488:CDS |
| CGATTTCCCGCCGTCTTCAT+TGG | 0.340075 | 1.1:-4761993 | None:intergenic |
| CCGCGGAAATCTTGAGAGTT+TGG | 0.344943 | 1.1:+4762459 | MS.gene24488:CDS |
| AAACGAGTGTAACCGTTTCT+AGG | 0.349506 | 1.1:+4761903 | MS.gene24488:CDS |
| CATGGGCATGGGCATGGGCA+TGG | 0.350742 | 1.1:+4762910 | MS.gene24488:CDS |
| ATGGTCATGGGCATGGGCAT+GGG | 0.351505 | 1.1:+4762905 | MS.gene24488:CDS |
| CGGCGATAGAAGCGTTGATC+TGG | 0.365810 | 1.1:+4762549 | MS.gene24488:CDS |
| GTGGAGAATCGTCGTGAAAT+CGG | 0.372507 | 1.1:+4762481 | MS.gene24488:CDS |
| ATGGGCATGGGCATGGGCAT+GGG | 0.376696 | 1.1:+4762917 | MS.gene24488:CDS |
| CTGAGAATGGAAAACAGAAT+TGG | 0.377941 | 1.1:+4762818 | MS.gene24488:CDS |
| CATGGGCATGGGCATGGGCA+TGG | 0.380148 | 1.1:+4762922 | MS.gene24488:CDS |
| AACTATGCTGTGAGGAATAA+TGG | 0.386152 | 1.1:+4762856 | MS.gene24488:CDS |
| CCGCGGAAATCTTGAGGGTT+TGG | 0.390845 | 1.1:+4762339 | MS.gene24488:CDS |
| ATGGGCATGGGCATGGGCAT+GGG | 0.395043 | 1.1:+4762911 | MS.gene24488:CDS |
| TCTTCGCGGTTTCGATCAAC+AGG | 0.406790 | 1.1:-4761932 | None:intergenic |
| ATGGGCATGGGCATGGGCAT+GGG | 0.408041 | 1.1:+4762923 | MS.gene24488:CDS |
| ATTATCAGCGATTCCATCTC+TGG | 0.410113 | 1.1:-4762278 | None:intergenic |
| GATGGTCATGGGCATGGGCA+TGG | 0.418952 | 1.1:+4762904 | MS.gene24488:CDS |
| TTCTGTCTCCATCTCGTCCA+TGG | 0.420281 | 1.1:-4762619 | None:intergenic |
| ATCCTTCTTCACCCAAGTCT+TGG | 0.420334 | 1.1:-4762968 | None:intergenic |
| CTGGTAATGTAAGCGTTTCT+AGG | 0.433325 | 1.1:+4762413 | MS.gene24488:CDS |
| CAATGAAGACGGCGGGAAAT+CGG | 0.435777 | 1.1:+4761994 | MS.gene24488:CDS |
| GGGAAATCGGTGACTGAAGC+TGG | 0.438338 | 1.1:+4762007 | MS.gene24488:CDS |
| TCGTGAAAACAGGAGGAAAT+CGG | 0.438381 | 1.1:+4762372 | MS.gene24488:CDS |
| TAGAGAATCGTCGTGAAAAC+AGG | 0.439939 | 1.1:+4762362 | MS.gene24488:CDS |
| ATGAAGTTGAAGAGAAATTG+AGG | 0.445674 | 1.1:+4762779 | MS.gene24488:CDS |
| TGAGCGACACGTGGCGGTTG+TGG | 0.452538 | 1.1:+4761877 | MS.gene24488:CDS |
| AACAACAAAGCTCCAAGACT+TGG | 0.453934 | 1.1:+4762956 | MS.gene24488:CDS |
| ATTACCAGCGTTTACACCTT+CGG | 0.455464 | 1.1:-4762398 | None:intergenic |
| CAGAAATCGGTGACCGGAGA+TGG | 0.457915 | 1.1:+4762523 | MS.gene24488:CDS |
| GTAACATAGTTTGAAGGAAG+AGG | 0.460002 | 1.1:-4761770 | None:intergenic |
| CTCCAAGACTTGGGTGAAGA+AGG | 0.461543 | 1.1:+4762966 | MS.gene24488:CDS |
| TCTTCAACAAGAAGGAAACT+TGG | 0.465191 | 1.1:+4761606 | MS.gene24488:CDS |
| CGAGGTGATGGTCATGGGCA+TGG | 0.468496 | 1.1:+4762898 | MS.gene24488:CDS |
| CGGAAATCAGTGACCGGAGC+TGG | 0.468791 | 1.1:+4762115 | MS.gene24488:CDS |
| TTATTGCTGTTGATCAGAAT+CGG | 0.470598 | 1.1:+4762179 | MS.gene24488:CDS |
| TGAAGTTGAAGAGAAATTGA+GGG | 0.478958 | 1.1:+4762780 | MS.gene24488:CDS |
| TAACCGTCGTGGAGTGGTTG+TGG | 0.484680 | 1.1:+4762228 | MS.gene24488:CDS |
| GGATGAAGATGAGCAGAAAT+CGG | 0.491846 | 1.1:+4762510 | MS.gene24488:CDS |
| ACAGAGTTTGGTAATGGAGG+AGG | 0.492296 | 1.1:+4761712 | MS.gene24488:CDS |
| ACCGTCGCGGATTCCAGCTC+CGG | 0.493214 | 1.1:-4762128 | None:intergenic |
| GAGAGAAGAGCAATTGAAGA+AGG | 0.500630 | 1.1:+4762664 | MS.gene24488:CDS |
| TCGCTCAGCTTCAAGAGCGT+TGG | 0.501828 | 1.1:+4761795 | MS.gene24488:CDS |
| TGAAGAAGGTAGTGCTGCTA+AGG | 0.508309 | 1.1:+4762678 | MS.gene24488:CDS |
| TCTATCGCCGATTCCATCTC+CGG | 0.511120 | 1.1:-4762536 | None:intergenic |
| GCCACGTGTCGCTCATCCAC+TGG | 0.511735 | 1.1:-4761869 | None:intergenic |
| GCGAGAGTAACATAGTTTGA+AGG | 0.513620 | 1.1:-4761776 | None:intergenic |
| TTATCTGTGAAATCTGAGAA+TGG | 0.516630 | 1.1:+4762805 | MS.gene24488:CDS |
| CGGAAACCTGTGACCAGAGA+TGG | 0.518609 | 1.1:+4762265 | MS.gene24488:CDS |
| AATCGCCGCGGAAATCTTGA+GGG | 0.520251 | 1.1:+4762334 | MS.gene24488:CDS |
| CGGAAATCTTGAGAGTTTGG+TGG | 0.521228 | 1.1:+4762462 | MS.gene24488:CDS |
| AGATCAAACCATGGACGAGA+TGG | 0.522177 | 1.1:+4762611 | MS.gene24488:CDS |
| GCGATTCCATCTCTGGTCAC+AGG | 0.522240 | 1.1:-4762271 | None:intergenic |
| AAGCGTTGATCTGGATGGTA+AGG | 0.522878 | 1.1:+4762558 | MS.gene24488:CDS |
| GAGGTGATGGTCATGGGCAT+GGG | 0.525302 | 1.1:+4762899 | MS.gene24488:CDS |
| GTGAAGAAGGATGGCTGTGT+TGG | 0.527517 | 1.1:+4762979 | MS.gene24488:CDS |
| GAACAAGAAGGCTAAGAAGA+AGG | 0.530235 | 1.1:+4762639 | MS.gene24488:CDS |
| AAAACAGAGTTTGGTAATGG+AGG | 0.536312 | 1.1:+4761709 | MS.gene24488:CDS |
| CGTAATCGCCGCGGAAATCG+TGG | 0.536951 | 1.1:+4762043 | MS.gene24488:CDS |
| CCGCGGAAATCGTGGTGACT+CGG | 0.538382 | 1.1:+4762051 | MS.gene24488:CDS |
| GATGAGCAGAAATCGGTGAC+CGG | 0.539906 | 1.1:+4762517 | MS.gene24488:CDS |
| ATCATCGAGGTGATGGTCAT+GGG | 0.541478 | 1.1:+4762893 | MS.gene24488:CDS |
| CTAGGTCTAATGATGTTGAT+CGG | 0.551430 | 1.1:+4762431 | MS.gene24488:CDS |
| CTGTCGCCAATGAAGACGGC+GGG | 0.551625 | 1.1:+4761987 | MS.gene24488:CDS |
| TAATCGCCGCGGAAATCTTG+AGG | 0.552075 | 1.1:+4762333 | MS.gene24488:CDS |
| CTTCAACAAGAAGGAAACTT+GGG | 0.553998 | 1.1:+4761607 | MS.gene24488:CDS |
| CATTATCAGCGTTACCGTCG+CGG | 0.557103 | 1.1:-4762141 | None:intergenic |
| GTTGCTGTCGCCAATGAAGA+CGG | 0.559012 | 1.1:+4761983 | MS.gene24488:CDS |
| CAACAACTTCTTCAACAAGA+AGG | 0.561746 | 1.1:+4761598 | MS.gene24488:CDS |
| TGATCGAAACCGCGAAGACT+CGG | 0.562861 | 1.1:+4761937 | MS.gene24488:CDS |
| GGTGGAGAACCGCCGTGCGG+TGG | 0.564140 | 1.1:+4762072 | MS.gene24488:CDS |
| GGTTATCCACCGAGTCTTCG+CGG | 0.564841 | 1.1:-4761946 | None:intergenic |
| CGACAGCAACATGCACCGCA+CGG | 0.567068 | 1.1:-4761970 | None:intergenic |
| GCGTGGAAATCGCGACGACT+CGG | 0.568374 | 1.1:+4762201 | MS.gene24488:CDS |
| GGCGATTAACCGTCGTGGAG+TGG | 0.573109 | 1.1:+4762222 | MS.gene24488:CDS |
| GACAGCCGGAAATCAGTGAC+CGG | 0.574839 | 1.1:+4762109 | MS.gene24488:CDS |
| AGAATGATTAGACTTAGAAA+CGG | 0.575857 | 1.1:-4762305 | None:intergenic |
| TCGGTGACCGGAGATGGAAT+CGG | 0.578359 | 1.1:+4762529 | MS.gene24488:CDS |
| GATCATCGAGGTGATGGTCA+TGG | 0.579615 | 1.1:+4762892 | MS.gene24488:CDS |
| AAGACTTGGGTGAAGAAGGA+TGG | 0.582235 | 1.1:+4762970 | MS.gene24488:CDS |
| AACAGGATTAGACCTAGAAA+CGG | 0.582547 | 1.1:-4761915 | None:intergenic |
| CGTTGATCTGGATGGTAAGG+TGG | 0.582643 | 1.1:+4762561 | MS.gene24488:CDS |
| TTGTGGTGTCTGAAGAGAAT+CGG | 0.584951 | 1.1:+4762245 | MS.gene24488:CDS |
| AGAAGGTAGTGCTGCTAAGG+AGG | 0.589961 | 1.1:+4762681 | MS.gene24488:CDS |
| GATGGTGATCATCGAGGTGA+TGG | 0.590058 | 1.1:+4762886 | MS.gene24488:CDS |
| ACAACAAAGCTCCAAGACTT+GGG | 0.591416 | 1.1:+4762957 | MS.gene24488:CDS |
| TGATCTGGATGGTAAGGTGG+AGG | 0.592538 | 1.1:+4762564 | MS.gene24488:CDS |
| AGGAATAATGGTAATGGCGA+TGG | 0.608468 | 1.1:+4762868 | MS.gene24488:CDS |
| TTGTGAAGTCTGATGACAGC+CGG | 0.620000 | 1.1:+4762095 | MS.gene24488:CDS |
| CAAGAAGGCTAAGAAGAAGG+AGG | 0.630483 | 1.1:+4762642 | MS.gene24488:CDS |
| GATAGAAGCGTTGATCTGGA+TGG | 0.631140 | 1.1:+4762553 | MS.gene24488:CDS |
| GCTGTGAGGAATAATGGTAA+TGG | 0.632298 | 1.1:+4762862 | MS.gene24488:CDS |
| CCGAGTCACCACGATTTCCG+CGG | 0.641726 | 1.1:-4762051 | None:intergenic |
| TCGAAACCGCGAAGACTCGG+TGG | 0.646575 | 1.1:+4761940 | MS.gene24488:CDS |
| CGGAAATCGTGGTGACTCGG+TGG | 0.650936 | 1.1:+4762054 | MS.gene24488:CDS |
| ACCAGTGGATGAGCGACACG+TGG | 0.651195 | 1.1:+4761868 | MS.gene24488:CDS |
| TCGTCGTGAAATCGGCAAGG+AGG | 0.651246 | 1.1:+4762489 | MS.gene24488:CDS |
| ACCGGAGCTGGAATCCGCGA+CGG | 0.653935 | 1.1:+4762127 | MS.gene24488:CDS |
| AGGAGGAAATCGGTGACCGA+AGG | 0.657586 | 1.1:+4762382 | MS.gene24488:CDS |
| AAAGGAGGATCATCAACCAG+TGG | 0.661881 | 1.1:+4761853 | MS.gene24488:CDS |
| GAATCGTCGTGAAATCGGCA+AGG | 0.665479 | 1.1:+4762486 | MS.gene24488:CDS |
| AGAAGAAGAAGATCAAACCA+TGG | 0.670595 | 1.1:+4762602 | MS.gene24488:CDS |
| AGAATCGTCGTGAAAACAGG+AGG | 0.672820 | 1.1:+4762365 | MS.gene24488:CDS |
| CAGACTTCACAACCACCGCA+CGG | 0.675060 | 1.1:-4762084 | None:intergenic |
| GTGACCGAAGGTGTAAACGC+TGG | 0.680986 | 1.1:+4762394 | MS.gene24488:CDS |
| GACTCGGCGATTAACCGTCG+TGG | 0.687215 | 1.1:+4762217 | MS.gene24488:CDS |
| AGTGGATGAGCGACACGTGG+CGG | 0.687454 | 1.1:+4761871 | MS.gene24488:CDS |
| GCTGTCGCCAATGAAGACGG+CGG | 0.688308 | 1.1:+4761986 | MS.gene24488:CDS |
| CAGCAACATGCACCGCACGG+CGG | 0.691321 | 1.1:-4761967 | None:intergenic |
| CTCGGTGGAGAACCGCCGTG+CGG | 0.692421 | 1.1:+4762069 | MS.gene24488:CDS |
| GCTGTTGATCAGAATCGGCG+TGG | 0.701988 | 1.1:+4762184 | MS.gene24488:CDS |
| CCAAACTCTCAAGATTTCCG+CGG | 0.706080 | 1.1:-4762459 | None:intergenic |
| CTCGGTGGATAACCGCCGTG+CGG | 0.709258 | 1.1:+4761955 | MS.gene24488:CDS |
| CCAAACCCTCAAGATTTCCG+CGG | 0.710817 | 1.1:-4762339 | None:intergenic |
| CATTCTGGTCGTAATCGCCG+CGG | 0.722423 | 1.1:+4762322 | MS.gene24488:CDS |
| GATGTTGATCGGAATCGCCG+CGG | 0.727666 | 1.1:+4762442 | MS.gene24488:CDS |
| GAGATGGAGACAGAACAAGA+AGG | 0.742489 | 1.1:+4762627 | MS.gene24488:CDS |
| ACACCACAACCACTCCACGA+CGG | 0.744561 | 1.1:-4762231 | None:intergenic |
| GCTGATTATCGTAATCGCCG+CGG | 0.747424 | 1.1:+4762034 | MS.gene24488:CDS |
| ACTTCACAACCACCGCACGG+CGG | 0.798210 | 1.1:-4762081 | None:intergenic |
| AATGGCGATGGTGATCATCG+AGG | 0.803843 | 1.1:+4762880 | MS.gene24488:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCAACTAGAAAAAA+AGG | + | chr1.1:4761835-4761854 | MS.gene24488:CDS | 15.0% |
| !! | AAAGAAAAAGAAAAAGGAAA+AGG | + | chr1.1:4761662-4761681 | MS.gene24488:CDS | 20.0% |
| !! | AAAGGAAAAGAAAAAGAAAA+AGG | + | chr1.1:4761656-4761675 | MS.gene24488:CDS | 20.0% |
| ! | AAAAAAACAGAGTTTGGTAA+TGG | + | chr1.1:4761706-4761725 | MS.gene24488:CDS | 25.0% |
| ! | AAAACAAAAGAGAGTGAAAA+AGG | + | chr1.1:4761638-4761657 | MS.gene24488:CDS | 25.0% |
| ! | AAATCAACTAGAAAAAAAGG+AGG | + | chr1.1:4761838-4761857 | MS.gene24488:CDS | 25.0% |
| ! | AGAAGAAAAAAAACAGAGTT+TGG | + | chr1.1:4761700-4761719 | MS.gene24488:CDS | 25.0% |
| ! | AGAATGATTAGACTTAGAAA+CGG | - | chr1.1:4762308-4762327 | None:intergenic | 25.0% |
| ATGAAGTTGAAGAGAAATTG+AGG | + | chr1.1:4762779-4762798 | MS.gene24488:CDS | 30.0% | |
| GTTTCTAAGTCTAATCATTC+TGG | + | chr1.1:4762307-4762326 | MS.gene24488:CDS | 30.0% | |
| TGAAGTTGAAGAGAAATTGA+GGG | + | chr1.1:4762780-4762799 | MS.gene24488:CDS | 30.0% | |
| TTATCTGTGAAATCTGAGAA+TGG | + | chr1.1:4762805-4762824 | MS.gene24488:CDS | 30.0% | |
| ! | TTATTGCTGTTGATCAGAAT+CGG | + | chr1.1:4762179-4762198 | MS.gene24488:CDS | 30.0% |
| AACAGGATTAGACCTAGAAA+CGG | - | chr1.1:4761918-4761937 | None:intergenic | 35.0% | |
| AACTATGCTGTGAGGAATAA+TGG | + | chr1.1:4762856-4762875 | MS.gene24488:CDS | 35.0% | |
| AGAAGAAGAAGATCAAACCA+TGG | + | chr1.1:4762602-4762621 | MS.gene24488:CDS | 35.0% | |
| CAACAACTTCTTCAACAAGA+AGG | + | chr1.1:4761598-4761617 | MS.gene24488:CDS | 35.0% | |
| CTAGGTCTAATGATGTTGAT+CGG | + | chr1.1:4762431-4762450 | MS.gene24488:CDS | 35.0% | |
| CTGAGAATGGAAAACAGAAT+TGG | + | chr1.1:4762818-4762837 | MS.gene24488:CDS | 35.0% | |
| CTTCAACAAGAAGGAAACTT+GGG | + | chr1.1:4761607-4761626 | MS.gene24488:CDS | 35.0% | |
| GAAAAATGAACTATGCTGTG+AGG | + | chr1.1:4762848-4762867 | MS.gene24488:CDS | 35.0% | |
| GTAACATAGTTTGAAGGAAG+AGG | - | chr1.1:4761773-4761792 | None:intergenic | 35.0% | |
| TCTTCAACAAGAAGGAAACT+TGG | + | chr1.1:4761606-4761625 | MS.gene24488:CDS | 35.0% | |
| ! | CTGATAATGCAACTGATTCT+AGG | + | chr1.1:4762155-4762174 | MS.gene24488:CDS | 35.0% |
| !! | AAAACAGAGTTTGGTAATGG+AGG | + | chr1.1:4761709-4761728 | MS.gene24488:CDS | 35.0% |
| AAACGAGTGTAACCGTTTCT+AGG | + | chr1.1:4761903-4761922 | MS.gene24488:CDS | 40.0% | |
| AACAACAAAGCTCCAAGACT+TGG | + | chr1.1:4762956-4762975 | MS.gene24488:CDS | 40.0% | |
| ACAACAAAGCTCCAAGACTT+GGG | + | chr1.1:4762957-4762976 | MS.gene24488:CDS | 40.0% | |
| ATTACCAGCGTTTACACCTT+CGG | - | chr1.1:4762401-4762420 | None:intergenic | 40.0% | |
| ATTATCAGCGATTCCATCTC+TGG | - | chr1.1:4762281-4762300 | None:intergenic | 40.0% | |
| GAACAAGAAGGCTAAGAAGA+AGG | + | chr1.1:4762639-4762658 | MS.gene24488:CDS | 40.0% | |
| GAGAGAAGAGCAATTGAAGA+AGG | + | chr1.1:4762664-4762683 | MS.gene24488:CDS | 40.0% | |
| GCGAGAGTAACATAGTTTGA+AGG | - | chr1.1:4761779-4761798 | None:intergenic | 40.0% | |
| GCTGTGAGGAATAATGGTAA+TGG | + | chr1.1:4762862-4762881 | MS.gene24488:CDS | 40.0% | |
| GGATGAAGATGAGCAGAAAT+CGG | + | chr1.1:4762510-4762529 | MS.gene24488:CDS | 40.0% | |
| TAGAGAATCGTCGTGAAAAC+AGG | + | chr1.1:4762362-4762381 | MS.gene24488:CDS | 40.0% | |
| TCGTGAAAACAGGAGGAAAT+CGG | + | chr1.1:4762372-4762391 | MS.gene24488:CDS | 40.0% | |
| TTGTGGTGTCTGAAGAGAAT+CGG | + | chr1.1:4762245-4762264 | MS.gene24488:CDS | 40.0% | |
| ! | CTGGTAATGTAAGCGTTTCT+AGG | + | chr1.1:4762413-4762432 | MS.gene24488:CDS | 40.0% |
| !! | AGGAATAATGGTAATGGCGA+TGG | + | chr1.1:4762868-4762887 | MS.gene24488:CDS | 40.0% |
| AAAGGAGGATCATCAACCAG+TGG | + | chr1.1:4761853-4761872 | MS.gene24488:CDS | 45.0% | |
| AAGACTTGGGTGAAGAAGGA+TGG | + | chr1.1:4762970-4762989 | MS.gene24488:CDS | 45.0% | |
| AGAATCGTCGTGAAAACAGG+AGG | + | chr1.1:4762365-4762384 | MS.gene24488:CDS | 45.0% | |
| AGATCAAACCATGGACGAGA+TGG | + | chr1.1:4762611-4762630 | MS.gene24488:CDS | 45.0% | |
| ATCCTTCTTCACCCAAGTCT+TGG | - | chr1.1:4762971-4762990 | None:intergenic | 45.0% | |
| CAAGAAGGCTAAGAAGAAGG+AGG | + | chr1.1:4762642-4762661 | MS.gene24488:CDS | 45.0% | |
| CCAAACTCTCAAGATTTCCG+CGG | - | chr1.1:4762462-4762481 | None:intergenic | 45.0% | |
| CGGAAATCTTGAGAGTTTGG+TGG | + | chr1.1:4762462-4762481 | MS.gene24488:CDS | 45.0% | |
| GAGATGGAGACAGAACAAGA+AGG | + | chr1.1:4762627-4762646 | MS.gene24488:CDS | 45.0% | |
| GTGGAGAATCGTCGTGAAAT+CGG | + | chr1.1:4762481-4762500 | MS.gene24488:CDS | 45.0% | |
| TTGTGAAGTCTGATGACAGC+CGG | + | chr1.1:4762095-4762114 | MS.gene24488:CDS | 45.0% | |
| ! | ATCATCGAGGTGATGGTCAT+GGG | + | chr1.1:4762893-4762912 | MS.gene24488:CDS | 45.0% |
| ! | GCATGGGCATGGGAATTTTA+AGG | + | chr1.1:4762933-4762952 | MS.gene24488:CDS | 45.0% |
| ! | TGAAGAAGGTAGTGCTGCTA+AGG | + | chr1.1:4762678-4762697 | MS.gene24488:CDS | 45.0% |
| !! | AAGCGTTGATCTGGATGGTA+AGG | + | chr1.1:4762558-4762577 | MS.gene24488:CDS | 45.0% |
| !! | ACAGAGTTTGGTAATGGAGG+AGG | + | chr1.1:4761712-4761731 | MS.gene24488:CDS | 45.0% |
| !! | GATAGAAGCGTTGATCTGGA+TGG | + | chr1.1:4762553-4762572 | MS.gene24488:CDS | 45.0% |
| AATCGCCGCGGAAATCTTGA+GGG | + | chr1.1:4762334-4762353 | MS.gene24488:CDS | 50.0% | |
| AATGGCGATGGTGATCATCG+AGG | + | chr1.1:4762880-4762899 | MS.gene24488:CDS | 50.0% | |
| CAATGAAGACGGCGGGAAAT+CGG | + | chr1.1:4761994-4762013 | MS.gene24488:CDS | 50.0% | |
| CATTATCAGCGTTACCGTCG+CGG | - | chr1.1:4762144-4762163 | None:intergenic | 50.0% | |
| CCAAACCCTCAAGATTTCCG+CGG | - | chr1.1:4762342-4762361 | None:intergenic | 50.0% | |
| CCGCGGAAATCTTGAGAGTT+TGG | + | chr1.1:4762459-4762478 | MS.gene24488:CDS | 50.0% | |
| CGTTGATCTGGATGGTAAGG+TGG | + | chr1.1:4762561-4762580 | MS.gene24488:CDS | 50.0% | |
| CTCCAAGACTTGGGTGAAGA+AGG | + | chr1.1:4762966-4762985 | MS.gene24488:CDS | 50.0% | |
| GAATCGTCGTGAAATCGGCA+AGG | + | chr1.1:4762486-4762505 | MS.gene24488:CDS | 50.0% | |
| GATGAGCAGAAATCGGTGAC+CGG | + | chr1.1:4762517-4762536 | MS.gene24488:CDS | 50.0% | |
| GATGGTGATCATCGAGGTGA+TGG | + | chr1.1:4762886-4762905 | MS.gene24488:CDS | 50.0% | |
| GCTGATTATCGTAATCGCCG+CGG | + | chr1.1:4762034-4762053 | MS.gene24488:CDS | 50.0% | |
| GTGAAGAAGGATGGCTGTGT+TGG | + | chr1.1:4762979-4762998 | MS.gene24488:CDS | 50.0% | |
| GTTGCTGTCGCCAATGAAGA+CGG | + | chr1.1:4761983-4762002 | MS.gene24488:CDS | 50.0% | |
| TAATCGCCGCGGAAATCTTG+AGG | + | chr1.1:4762333-4762352 | MS.gene24488:CDS | 50.0% | |
| TCTTCGCGGTTTCGATCAAC+AGG | - | chr1.1:4761935-4761954 | None:intergenic | 50.0% | |
| TGATCGAAACCGCGAAGACT+CGG | + | chr1.1:4761937-4761956 | MS.gene24488:CDS | 50.0% | |
| TGATCTGGATGGTAAGGTGG+AGG | + | chr1.1:4762564-4762583 | MS.gene24488:CDS | 50.0% | |
| TTCTGTCTCCATCTCGTCCA+TGG | - | chr1.1:4762622-4762641 | None:intergenic | 50.0% | |
| ! | AGAAGGTAGTGCTGCTAAGG+AGG | + | chr1.1:4762681-4762700 | MS.gene24488:CDS | 50.0% |
| ! | GATCATCGAGGTGATGGTCA+TGG | + | chr1.1:4762892-4762911 | MS.gene24488:CDS | 50.0% |
| !! | TCTATCGCCGATTCCATCTC+CGG | - | chr1.1:4762539-4762558 | None:intergenic | 50.0% |
| ACACCACAACCACTCCACGA+CGG | - | chr1.1:4762234-4762253 | None:intergenic | 55.0% | |
| AGGAGGAAATCGGTGACCGA+AGG | + | chr1.1:4762382-4762401 | MS.gene24488:CDS | 55.0% | |
| ATGGTCATGGGCATGGGCAT+GGG | + | chr1.1:4762905-4762924 | MS.gene24488:CDS | 55.0% | |
| CAGAAATCGGTGACCGGAGA+TGG | + | chr1.1:4762523-4762542 | MS.gene24488:CDS | 55.0% | |
| CAGACTTCACAACCACCGCA+CGG | - | chr1.1:4762087-4762106 | None:intergenic | 55.0% | |
| CATTCTGGTCGTAATCGCCG+CGG | + | chr1.1:4762322-4762341 | MS.gene24488:CDS | 55.0% | |
| CCGCGGAAATCTTGAGGGTT+TGG | + | chr1.1:4762339-4762358 | MS.gene24488:CDS | 55.0% | |
| CGATTTCCCGCCGTCTTCAT+TGG | - | chr1.1:4761996-4762015 | None:intergenic | 55.0% | |
| CGGAAACCTGTGACCAGAGA+TGG | + | chr1.1:4762265-4762284 | MS.gene24488:CDS | 55.0% | |
| GACAGCCGGAAATCAGTGAC+CGG | + | chr1.1:4762109-4762128 | MS.gene24488:CDS | 55.0% | |
| GATGTTGATCGGAATCGCCG+CGG | + | chr1.1:4762442-4762461 | MS.gene24488:CDS | 55.0% | |
| GCGATTCCATCTCTGGTCAC+AGG | - | chr1.1:4762274-4762293 | None:intergenic | 55.0% | |
| GCTGTTGATCAGAATCGGCG+TGG | + | chr1.1:4762184-4762203 | MS.gene24488:CDS | 55.0% | |
| GGGAAATCGGTGACTGAAGC+TGG | + | chr1.1:4762007-4762026 | MS.gene24488:CDS | 55.0% | |
| GGTTATCCACCGAGTCTTCG+CGG | - | chr1.1:4761949-4761968 | None:intergenic | 55.0% | |
| TAACCGTCGTGGAGTGGTTG+TGG | + | chr1.1:4762228-4762247 | MS.gene24488:CDS | 55.0% | |
| TCGGTGACCGGAGATGGAAT+CGG | + | chr1.1:4762529-4762548 | MS.gene24488:CDS | 55.0% | |
| TCGTCGTGAAATCGGCAAGG+AGG | + | chr1.1:4762489-4762508 | MS.gene24488:CDS | 55.0% | |
| ! | GAGGTGATGGTCATGGGCAT+GGG | + | chr1.1:4762899-4762918 | MS.gene24488:CDS | 55.0% |
| ! | GTGACCGAAGGTGTAAACGC+TGG | + | chr1.1:4762394-4762413 | MS.gene24488:CDS | 55.0% |
| ! | TCGCTCAGCTTCAAGAGCGT+TGG | + | chr1.1:4761795-4761814 | MS.gene24488:CDS | 55.0% |
| !! | CAGCTCCGGTCACTGATTTC+CGG | - | chr1.1:4762117-4762136 | None:intergenic | 55.0% |
| !! | CGGCGATAGAAGCGTTGATC+TGG | + | chr1.1:4762549-4762568 | MS.gene24488:CDS | 55.0% |
| ACCAGTGGATGAGCGACACG+TGG | + | chr1.1:4761868-4761887 | MS.gene24488:CDS | 60.0% | |
| ACTTCACAACCACCGCACGG+CGG | - | chr1.1:4762084-4762103 | None:intergenic | 60.0% | |
| AGTGGATGAGCGACACGTGG+CGG | + | chr1.1:4761871-4761890 | MS.gene24488:CDS | 60.0% | |
| ATGGGCATGGGCATGGGCAT+GGG | + | chr1.1:4762911-4762930 | MS.gene24488:CDS | 60.0% | |
| CCGAGTCACCACGATTTCCG+CGG | - | chr1.1:4762054-4762073 | None:intergenic | 60.0% | |
| CCGCGGAAATCGTGGTGACT+CGG | + | chr1.1:4762051-4762070 | MS.gene24488:CDS | 60.0% | |
| CGACAGCAACATGCACCGCA+CGG | - | chr1.1:4761973-4761992 | None:intergenic | 60.0% | |
| CGGAAATCAGTGACCGGAGC+TGG | + | chr1.1:4762115-4762134 | MS.gene24488:CDS | 60.0% | |
| CGTAATCGCCGCGGAAATCG+TGG | + | chr1.1:4762043-4762062 | MS.gene24488:CDS | 60.0% | |
| CTGTCGCCAATGAAGACGGC+GGG | + | chr1.1:4761987-4762006 | MS.gene24488:CDS | 60.0% | |
| GACTCGGCGATTAACCGTCG+TGG | + | chr1.1:4762217-4762236 | MS.gene24488:CDS | 60.0% | |
| GATGGTCATGGGCATGGGCA+TGG | + | chr1.1:4762904-4762923 | MS.gene24488:CDS | 60.0% | |
| GCGTGGAAATCGCGACGACT+CGG | + | chr1.1:4762201-4762220 | MS.gene24488:CDS | 60.0% | |
| GCTGTCGCCAATGAAGACGG+CGG | + | chr1.1:4761986-4762005 | MS.gene24488:CDS | 60.0% | |
| GGCGATTAACCGTCGTGGAG+TGG | + | chr1.1:4762222-4762241 | MS.gene24488:CDS | 60.0% | |
| TCGAAACCGCGAAGACTCGG+TGG | + | chr1.1:4761940-4761959 | MS.gene24488:CDS | 60.0% | |
| ! | CGAGGTGATGGTCATGGGCA+TGG | + | chr1.1:4762898-4762917 | MS.gene24488:CDS | 60.0% |
| ! | CGGAAATCGTGGTGACTCGG+TGG | + | chr1.1:4762054-4762073 | MS.gene24488:CDS | 60.0% |
| ACCGGAGCTGGAATCCGCGA+CGG | + | chr1.1:4762127-4762146 | MS.gene24488:CDS | 65.0% | |
| ACCGTCGCGGATTCCAGCTC+CGG | - | chr1.1:4762131-4762150 | None:intergenic | 65.0% | |
| CAGCAACATGCACCGCACGG+CGG | - | chr1.1:4761970-4761989 | None:intergenic | 65.0% | |
| CATGGGCATGGGCATGGGCA+TGG | + | chr1.1:4762910-4762929 | MS.gene24488:CDS | 65.0% | |
| CTCGGTGGATAACCGCCGTG+CGG | + | chr1.1:4761955-4761974 | MS.gene24488:CDS | 65.0% | |
| TGAGCGACACGTGGCGGTTG+TGG | + | chr1.1:4761877-4761896 | MS.gene24488:CDS | 65.0% | |
| ! | GCCACGTGTCGCTCATCCAC+TGG | - | chr1.1:4761872-4761891 | None:intergenic | 65.0% |
| CTCGGTGGAGAACCGCCGTG+CGG | + | chr1.1:4762069-4762088 | MS.gene24488:CDS | 70.0% | |
| GGTGGAGAACCGCCGTGCGG+TGG | + | chr1.1:4762072-4762091 | MS.gene24488:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4761581 | 4763017 | 4761581 | ID=MS.gene24488 |
| chr1.1 | mRNA | 4761581 | 4763017 | 4761581 | ID=MS.gene24488.t1;Parent=MS.gene24488 |
| chr1.1 | exon | 4761581 | 4763017 | 4761581 | ID=MS.gene24488.t1.exon1;Parent=MS.gene24488.t1 |
| chr1.1 | CDS | 4761581 | 4763017 | 4761581 | ID=cds.MS.gene24488.t1;Parent=MS.gene24488.t1 |
| Gene Sequence |
| Protein sequence |
