Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24579.t1 | XP_020220731.1 | 84.6 | 727 | 99 | 2 | 1 | 715 | 1 | 726 | 0.00E+00 | 1096.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24579.t1 | Q9M1H3 | 76.1 | 724 | 163 | 4 | 1 | 715 | 1 | 723 | 5.1e-285 | 981.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24579.t1 | A0A1S2XNE6 | 85.9 | 716 | 99 | 2 | 1 | 715 | 1 | 715 | 0.0e+00 | 1093.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40858 | MS.gene24579 | PPI |
| MS.gene69745 | MS.gene24579 | PPI |
| MS.gene31234 | MS.gene24579 | PPI |
| MS.gene044268 | MS.gene24579 | PPI |
| MS.gene028666 | MS.gene24579 | PPI |
| MS.gene25771 | MS.gene24579 | PPI |
| MS.gene70530 | MS.gene24579 | PPI |
| MS.gene050086 | MS.gene24579 | PPI |
| MS.gene98065 | MS.gene24579 | PPI |
| MS.gene054719 | MS.gene24579 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24579.t1 | MTR_8g075040 | 91.049 | 715 | 62 | 2 | 1 | 715 | 54 | 766 | 0.0 | 1240 |
| MS.gene24579.t1 | MTR_7g018380 | 90.922 | 716 | 63 | 2 | 1 | 715 | 1 | 715 | 0.0 | 1236 |
| MS.gene24579.t1 | MTR_1g066620 | 93.214 | 560 | 37 | 1 | 157 | 715 | 2 | 561 | 0.0 | 1063 |
| MS.gene24579.t1 | MTR_3g080970 | 43.286 | 566 | 292 | 10 | 147 | 705 | 167 | 710 | 1.19e-151 | 457 |
| MS.gene24579.t1 | MTR_2g095440 | 41.516 | 554 | 290 | 8 | 153 | 705 | 62 | 582 | 1.46e-143 | 432 |
| MS.gene24579.t1 | MTR_2g095440 | 41.304 | 552 | 290 | 8 | 155 | 705 | 4 | 522 | 1.12e-142 | 428 |
| MS.gene24579.t1 | MTR_2g095440 | 41.455 | 550 | 288 | 8 | 157 | 705 | 12 | 528 | 2.06e-142 | 427 |
| MS.gene24579.t1 | MTR_4g057795 | 41.166 | 566 | 275 | 9 | 153 | 705 | 62 | 582 | 5.38e-141 | 426 |
| MS.gene24579.t1 | MTR_4g057795 | 40.891 | 516 | 247 | 9 | 203 | 705 | 2 | 472 | 1.14e-124 | 380 |
| MS.gene24579.t1 | MTR_3g095010 | 29.561 | 592 | 365 | 14 | 145 | 715 | 96 | 656 | 2.52e-62 | 221 |
| MS.gene24579.t1 | MTR_3g095010 | 26.073 | 303 | 174 | 5 | 155 | 457 | 433 | 685 | 1.46e-21 | 100 |
| MS.gene24579.t1 | MTR_6g011680 | 32.314 | 229 | 116 | 11 | 488 | 691 | 1008 | 1222 | 6.43e-13 | 73.2 |
| MS.gene24579.t1 | MTR_8g022270 | 28.696 | 230 | 123 | 8 | 488 | 691 | 598 | 812 | 7.73e-13 | 72.8 |
| MS.gene24579.t1 | MTR_7g102070 | 28.390 | 236 | 128 | 8 | 482 | 691 | 420 | 640 | 1.24e-12 | 72.0 |
| MS.gene24579.t1 | MTR_1g063170 | 29.858 | 211 | 113 | 7 | 482 | 666 | 393 | 594 | 1.37e-12 | 72.0 |
| MS.gene24579.t1 | MTR_4g124050 | 28.814 | 236 | 106 | 9 | 493 | 691 | 1055 | 1265 | 3.05e-12 | 70.9 |
| MS.gene24579.t1 | MTR_3g107800 | 29.661 | 236 | 104 | 9 | 493 | 691 | 1031 | 1241 | 3.22e-12 | 70.9 |
| MS.gene24579.t1 | MTR_5g029750 | 27.193 | 228 | 129 | 9 | 488 | 691 | 989 | 1203 | 1.28e-11 | 68.9 |
| MS.gene24579.t1 | MTR_7g079540 | 36.025 | 161 | 79 | 6 | 505 | 643 | 101 | 259 | 5.55e-11 | 64.7 |
| MS.gene24579.t1 | MTR_7g079540 | 36.025 | 161 | 79 | 6 | 505 | 643 | 101 | 259 | 9.47e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24579.t1 | AT3G54540 | 76.341 | 727 | 156 | 5 | 1 | 715 | 1 | 723 | 0.0 | 1103 |
| MS.gene24579.t1 | AT3G54540 | 76.341 | 727 | 156 | 5 | 1 | 715 | 1 | 723 | 0.0 | 1103 |
| MS.gene24579.t1 | AT1G64550 | 43.937 | 569 | 289 | 11 | 145 | 705 | 165 | 711 | 4.24e-150 | 454 |
| MS.gene24579.t1 | AT5G60790 | 41.081 | 555 | 291 | 8 | 153 | 705 | 67 | 587 | 9.88e-140 | 423 |
| MS.gene24579.t1 | AT5G64840 | 28.571 | 567 | 371 | 9 | 146 | 703 | 89 | 630 | 5.90e-63 | 223 |
| MS.gene24579.t1 | AT5G09930 | 29.072 | 571 | 365 | 12 | 145 | 703 | 74 | 616 | 5.79e-60 | 214 |
| MS.gene24579.t1 | AT5G09930 | 27.244 | 312 | 152 | 6 | 155 | 454 | 411 | 659 | 6.61e-20 | 95.1 |
| MS.gene24579.t1 | AT3G28390 | 29.956 | 227 | 116 | 9 | 493 | 691 | 985 | 1196 | 3.57e-12 | 70.5 |
| MS.gene24579.t1 | AT2G36910 | 29.612 | 206 | 110 | 7 | 487 | 666 | 367 | 563 | 4.22e-12 | 70.5 |
| MS.gene24579.t1 | AT3G28345 | 29.808 | 208 | 121 | 7 | 481 | 666 | 988 | 1192 | 7.73e-12 | 69.7 |
| MS.gene24579.t1 | AT3G28860 | 31.818 | 220 | 119 | 9 | 493 | 691 | 1015 | 1224 | 9.20e-12 | 69.3 |
| MS.gene24579.t1 | AT2G47000 | 29.344 | 259 | 117 | 10 | 488 | 710 | 1042 | 1270 | 1.00e-11 | 69.3 |
| MS.gene24579.t1 | AT2G47000 | 29.344 | 259 | 117 | 10 | 488 | 710 | 1042 | 1270 | 1.00e-11 | 69.3 |
| MS.gene24579.t1 | AT2G47000 | 29.344 | 259 | 117 | 10 | 488 | 710 | 1042 | 1270 | 1.00e-11 | 69.3 |
| MS.gene24579.t1 | AT1G67940 | 31.754 | 211 | 102 | 9 | 166 | 367 | 41 | 218 | 1.34e-11 | 66.2 |
| MS.gene24579.t1 | AT3G62150 | 27.917 | 240 | 113 | 9 | 488 | 691 | 1052 | 1267 | 4.03e-11 | 67.4 |
| MS.gene24579.t1 | AT3G62150 | 27.917 | 240 | 113 | 9 | 488 | 691 | 1052 | 1267 | 4.03e-11 | 67.4 |
| MS.gene24579.t1 | AT3G62150 | 27.917 | 240 | 113 | 9 | 488 | 691 | 1052 | 1267 | 4.03e-11 | 67.4 |
| MS.gene24579.t1 | AT1G70610 | 32.184 | 174 | 102 | 4 | 488 | 646 | 455 | 627 | 4.91e-11 | 66.6 |
| MS.gene24579.t1 | AT1G70610 | 32.184 | 174 | 102 | 4 | 488 | 646 | 274 | 446 | 6.23e-11 | 65.9 |
Find 163 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGCAAAACTTGGTAAATT+TGG | 0.116784 | 1.3:-46783952 | MS.gene24579:CDS |
| CTCTGCCATGTTAGCAAGTA+TGG | 0.253861 | 1.3:-46785636 | MS.gene24579:CDS |
| AGCTGCCCATTTGGCTGAAC+AGG | 0.276829 | 1.3:-46785393 | MS.gene24579:CDS |
| ATGAAGAACGGAGTCAAATA+TGG | 0.280825 | 1.3:-46783696 | MS.gene24579:CDS |
| AGAAATTGAAAGCAGCTAAA+AGG | 0.323101 | 1.3:-46784476 | MS.gene24579:CDS |
| TCTTTGCCTGTTCAGCCAAA+TGG | 0.324070 | 1.3:+46785387 | None:intergenic |
| TGTTGATGTTGGCATTGATA+TGG | 0.325155 | 1.3:-46784205 | MS.gene24579:CDS |
| GTCTGAAATCCTCCCGGTTT+GGG | 0.332518 | 1.3:+46784235 | None:intergenic |
| TAAGAATATTGACGTCCTTC+TGG | 0.334816 | 1.3:-46785102 | MS.gene24579:CDS |
| GTGCAAAACTTGGTAAATTT+GGG | 0.337873 | 1.3:-46783951 | MS.gene24579:CDS |
| ATATCTTCTAGCTGGTGATT+TGG | 0.356211 | 1.3:-46784130 | MS.gene24579:CDS |
| TTGTAATCCTCAAATGTTCC+AGG | 0.358592 | 1.3:+46783643 | None:intergenic |
| ACTTGTGTGGTACCTCTACT+TGG | 0.360096 | 1.3:+46784346 | None:intergenic |
| ACTCCCATTGTCAAACTATC+AGG | 0.364911 | 1.3:-46783907 | MS.gene24579:CDS |
| ACCCACAAATCATCTGGATA+TGG | 0.365374 | 1.3:-46783815 | MS.gene24579:CDS |
| GTTGCCATTGTTGGGCCTAA+TGG | 0.366354 | 1.3:-46784174 | MS.gene24579:CDS |
| CTTTGCCTGTTCAGCCAAAT+GGG | 0.383181 | 1.3:+46785388 | None:intergenic |
| AGAAGGACGTCAATATTCTT+AGG | 0.383693 | 1.3:+46785104 | None:intergenic |
| GGGACTCGTGTTGCCATTGT+TGG | 0.395294 | 1.3:-46784183 | MS.gene24579:CDS |
| TTGACTTTCCCATTCCATTC+GGG | 0.395555 | 1.3:+46785165 | None:intergenic |
| GTTGACTTTCCCATTCCATT+CGG | 0.398483 | 1.3:+46785164 | None:intergenic |
| TTGACCTGAGGGCTGTTCTC+TGG | 0.403120 | 1.3:-46784698 | MS.gene24579:CDS |
| AGTCGGGCTTTGGTTCTTGA+TGG | 0.407371 | 1.3:-46785317 | MS.gene24579:CDS |
| TGTCATCCCAAGTCGGGCTT+TGG | 0.407674 | 1.3:-46785327 | MS.gene24579:CDS |
| TCCATATCCAGATGATTTGT+GGG | 0.411181 | 1.3:+46783814 | None:intergenic |
| GATCTACAAAATGCAGCTTC+AGG | 0.411979 | 1.3:-46784987 | MS.gene24579:CDS |
| TTACTAAGTCCCTCCTGGTC+TGG | 0.421538 | 1.3:+46783988 | None:intergenic |
| TGAGCTTTAGCTACCCAAAC+CGG | 0.421726 | 1.3:-46784248 | MS.gene24579:CDS |
| CATGGTTTAGCCTTTGTAGA+TGG | 0.422109 | 1.3:+46785695 | None:intergenic |
| CTTCGAAGTTCACCTTCACT+TGG | 0.427699 | 1.3:+46784105 | None:intergenic |
| ATTTCAAACTTCATTTCTAT+CGG | 0.428855 | 1.3:-46784575 | MS.gene24579:CDS |
| AGTCTGAAATCCTCCCGGTT+TGG | 0.430408 | 1.3:+46784234 | None:intergenic |
| TTCCATATCCAGATGATTTG+TGG | 0.432684 | 1.3:+46783813 | None:intergenic |
| TTTCAAACTTCATTTCTATC+GGG | 0.433047 | 1.3:-46784574 | MS.gene24579:CDS |
| GAGATATTCCCAACACTTTG+TGG | 0.436079 | 1.3:-46784061 | MS.gene24579:CDS |
| AGCATCGAAAAGCAAAAGTA+AGG | 0.436628 | 1.3:-46784391 | MS.gene24579:CDS |
| GAAGTCAGAAATTGAGGATA+GGG | 0.438140 | 1.3:-46784083 | MS.gene24579:CDS |
| TCATGGAAAACGGTATGGTT+TGG | 0.441052 | 1.3:-46785192 | MS.gene24579:CDS |
| TAATGTTGTCATCCCAAGTC+GGG | 0.442342 | 1.3:-46785333 | MS.gene24579:CDS |
| GCAAAGAAAGAAGCTCTTAG+AGG | 0.450601 | 1.3:-46785371 | MS.gene24579:CDS |
| TCCCTCTGATGATGATGAAT+CGG | 0.452332 | 1.3:-46785513 | MS.gene24579:CDS |
| GTGTTTCATCCATTGTTAGT+AGG | 0.453766 | 1.3:+46784037 | None:intergenic |
| TATGCAGAAGCTTTCGGAGC+AGG | 0.454924 | 1.3:+46785557 | None:intergenic |
| CAGCAGCATCAGACCCCATC+AGG | 0.463191 | 1.3:+46784883 | None:intergenic |
| AGATGAACCCACAAATCATC+TGG | 0.463680 | 1.3:-46783821 | MS.gene24579:CDS |
| GTTGATGTTGGCATTGATAT+GGG | 0.466393 | 1.3:-46784204 | MS.gene24579:CDS |
| GGTGTGAGCTCTGTAGGTTC+AGG | 0.469356 | 1.3:+46784294 | None:intergenic |
| CTGGTTGAGCAGGAGGTAGT+TGG | 0.476330 | 1.3:-46785083 | MS.gene24579:CDS |
| TAGTAGGTCCACAAAGTGTT+GGG | 0.476791 | 1.3:+46784053 | None:intergenic |
| TGACGTCCTTCTGGTTGAGC+AGG | 0.476988 | 1.3:-46785093 | MS.gene24579:CDS |
| GTCCTACAAAATCCTTTAGT+GGG | 0.477264 | 1.3:-46784803 | MS.gene24579:CDS |
| AAATTTCCCTGGAACATTTG+AGG | 0.478395 | 1.3:-46783650 | MS.gene24579:CDS |
| TATCAGGAGGGCAGAAAGCT+CGG | 0.480167 | 1.3:-46783891 | MS.gene24579:CDS |
| TTGGTTGGCCCGAATGGAAT+GGG | 0.482720 | 1.3:-46785173 | MS.gene24579:CDS |
| GCGGGTGGGAACAACGTTGT+AGG | 0.488336 | 1.3:-46784530 | MS.gene24579:CDS |
| CTTGCTTACTAAGTCCCTCC+TGG | 0.488701 | 1.3:+46783983 | None:intergenic |
| ATTGATTTCACGTGTGTGTA+AGG | 0.490491 | 1.3:-46783719 | MS.gene24579:CDS |
| GAGGCTGTCCGTGCAAAACT+TGG | 0.491172 | 1.3:-46783961 | MS.gene24579:CDS |
| CAAATATGGGTTGTTGAAGA+TGG | 0.492000 | 1.3:-46783682 | MS.gene24579:CDS |
| ATCAGGAGGGCAGAAAGCTC+GGG | 0.492201 | 1.3:-46783890 | MS.gene24579:CDS |
| TGTCCTACAAAATCCTTTAG+TGG | 0.493667 | 1.3:-46784804 | MS.gene24579:CDS |
| CCTCAGGTCAAGATGATTAG+TGG | 0.497140 | 1.3:+46784710 | None:intergenic |
| AGATGATACTAATGAGGAAG+AGG | 0.497593 | 1.3:-46784946 | MS.gene24579:CDS |
| TTCGAAGAAGTCAGAAATTG+AGG | 0.499370 | 1.3:-46784089 | MS.gene24579:CDS |
| GGACTCGTGTTGCCATTGTT+GGG | 0.501610 | 1.3:-46784182 | MS.gene24579:CDS |
| ACGTCAATATTCTTAGGTAC+TGG | 0.501876 | 1.3:+46785110 | None:intergenic |
| TATGGTTTGGTTGGCCCGAA+TGG | 0.501890 | 1.3:-46785179 | MS.gene24579:CDS |
| AGACTCTCAGATGTTGATGT+TGG | 0.502794 | 1.3:-46784216 | MS.gene24579:CDS |
| AGAAGTCAGAAATTGAGGAT+AGG | 0.504671 | 1.3:-46784084 | MS.gene24579:CDS |
| TAGTAAAGATGTTTCTAAGA+AGG | 0.504745 | 1.3:-46785672 | MS.gene24579:CDS |
| TCAAGAACCAAAGCCCGACT+TGG | 0.505660 | 1.3:+46785320 | None:intergenic |
| TTAGTAGGTCCACAAAGTGT+TGG | 0.510313 | 1.3:+46784052 | None:intergenic |
| TAGAAGAGTACTTGTGTCGC+TGG | 0.512213 | 1.3:-46784674 | MS.gene24579:CDS |
| GTTTGACAATGGGAGTAAGA+TGG | 0.515153 | 1.3:+46783914 | None:intergenic |
| TGAAGATATCTCATGGAAAA+CGG | 0.518295 | 1.3:-46785202 | MS.gene24579:CDS |
| AGTGGCGGTGTGAGCTCTGT+AGG | 0.518413 | 1.3:+46784288 | None:intergenic |
| TCAGTGTATGCAGAAGCTTT+CGG | 0.518649 | 1.3:+46785551 | None:intergenic |
| TTGAAAGCAGCTAAAAGGAC+TGG | 0.519209 | 1.3:-46784471 | MS.gene24579:CDS |
| AGACGAAGAAGGTACTGAAC+AGG | 0.519926 | 1.3:+46784015 | None:intergenic |
| AATGCAGCTTCAGGTGAAGA+AGG | 0.521065 | 1.3:-46784978 | MS.gene24579:CDS |
| CGGGTGGGAACAACGTTGTA+GGG | 0.523970 | 1.3:-46784529 | MS.gene24579:CDS |
| CGTCCTTCTGGTTGAGCAGG+AGG | 0.524087 | 1.3:-46785090 | MS.gene24579:CDS |
| ACTAATGAGGAAGAGGATGC+AGG | 0.525358 | 1.3:-46784939 | MS.gene24579:CDS |
| TCTTCGTCTGCATCCAGACC+AGG | 0.526284 | 1.3:-46784001 | MS.gene24579:CDS |
| GCTCTGTAGGTTCAGGAAAG+TGG | 0.529343 | 1.3:+46784301 | None:intergenic |
| ATTGTTGGGCCTAATGGTGC+TGG | 0.529640 | 1.3:-46784168 | MS.gene24579:CDS |
| GGAAAACGGTATGGTTTGGT+TGG | 0.532511 | 1.3:-46785188 | MS.gene24579:CDS |
| TGGAACATTTGAGGATTACA+AGG | 0.541220 | 1.3:-46783641 | MS.gene24579:CDS |
| TTTGGTTGGCCCGAATGGAA+TGG | 0.541464 | 1.3:-46785174 | MS.gene24579:CDS |
| TTCAACATTAGCTGAAACAA+CGG | 0.543598 | 1.3:+46785037 | None:intergenic |
| GTATGAACAATTACACCTGA+TGG | 0.543906 | 1.3:-46784898 | MS.gene24579:CDS |
| CCCTCCTGATAGTTTGACAA+TGG | 0.544696 | 1.3:+46783903 | None:intergenic |
| TTCAAACTTCATTTCTATCG+GGG | 0.545830 | 1.3:-46784573 | MS.gene24579:CDS |
| AGCTAAAAGGACTGGAGACA+AGG | 0.547150 | 1.3:-46784463 | MS.gene24579:CDS |
| TATGAACAATTACACCTGAT+GGG | 0.547968 | 1.3:-46784897 | MS.gene24579:CDS |
| CCTCCTGATAGTTTGACAAT+GGG | 0.549798 | 1.3:+46783904 | None:intergenic |
| TGAAGAACGGAGTCAAATAT+GGG | 0.553289 | 1.3:-46783695 | MS.gene24579:CDS |
| GGGAAAGTTTGATGAGGATG+AGG | 0.553303 | 1.3:-46784370 | MS.gene24579:CDS |
| GCATCAGTGAAGATATCTCA+TGG | 0.554022 | 1.3:-46785209 | MS.gene24579:CDS |
| TTAGAAACATCTTTACTACA+TGG | 0.554327 | 1.3:+46785677 | None:intergenic |
| ATATCTCATGGAAAACGGTA+TGG | 0.560689 | 1.3:-46785197 | MS.gene24579:CDS |
| TGATGATGATGAATCGGAAG+AGG | 0.561420 | 1.3:-46785507 | MS.gene24579:CDS |
| CATCTGGATATGGAAAGTAT+TGG | 0.561515 | 1.3:-46783805 | MS.gene24579:CDS |
| ACACTTCTATATCTTCTAGC+TGG | 0.562450 | 1.3:-46784138 | MS.gene24579:CDS |
| CAAGAACCAAAGCCCGACTT+GGG | 0.562585 | 1.3:+46785321 | None:intergenic |
| CACTAATCATCTTGACCTGA+GGG | 0.565689 | 1.3:-46784709 | MS.gene24579:CDS |
| CTTTGTGGACCTACTAACAA+TGG | 0.566897 | 1.3:-46784046 | MS.gene24579:CDS |
| AGACAAGGCTCAACAAGATA+AGG | 0.569772 | 1.3:-46784448 | MS.gene24579:CDS |
| TTAATGTTGTCATCCCAAGT+CGG | 0.570270 | 1.3:-46785334 | MS.gene24579:CDS |
| GATGCACTGCATAAATTCAC+CGG | 0.574833 | 1.3:-46783772 | MS.gene24579:CDS |
| CTGAGAGTCTGAAATCCTCC+CGG | 0.576382 | 1.3:+46784229 | None:intergenic |
| GTGTCGCTGGAAGAAAACTT+TGG | 0.577100 | 1.3:-46784661 | MS.gene24579:CDS |
| TATGGAAAGTATTGGTGCAT+TGG | 0.577172 | 1.3:-46783797 | MS.gene24579:CDS |
| TCTCAGAGCATACTGTATTG+AGG | 0.578071 | 1.3:+46784613 | None:intergenic |
| GCATCGAAAAGCAAAAGTAA+GGG | 0.580770 | 1.3:-46784390 | MS.gene24579:CDS |
| TTCATCCATACTTGCTAACA+TGG | 0.581588 | 1.3:+46785631 | None:intergenic |
| CTAACCAGAGAACAGCCCTC+AGG | 0.582718 | 1.3:+46784694 | None:intergenic |
| CTTGTGTGGTACCTCTACTT+GGG | 0.584462 | 1.3:+46784347 | None:intergenic |
| GAGCTTTAGCTACCCAAACC+GGG | 0.590884 | 1.3:-46784247 | MS.gene24579:CDS |
| TCATCTAACAATAAAATGTG+AGG | 0.596826 | 1.3:+46783838 | None:intergenic |
| CTCAGGTCAAGATGATTAGT+GGG | 0.599587 | 1.3:+46784711 | None:intergenic |
| ACTTCAATAAGCTGCAGAAG+TGG | 0.601176 | 1.3:+46784270 | None:intergenic |
| GGCTCAACAAGATAAGGTGA+AGG | 0.604308 | 1.3:-46784442 | MS.gene24579:CDS |
| TCCTACAAAATCCTTTAGTG+GGG | 0.604851 | 1.3:-46784802 | MS.gene24579:CDS |
| TTGATGTTGGCATTGATATG+GGG | 0.604870 | 1.3:-46784203 | MS.gene24579:CDS |
| TCATCGAGCAATAATAGAGT+GGG | 0.608704 | 1.3:+46784735 | None:intergenic |
| TTCCGATTCATCATCATCAG+AGG | 0.609922 | 1.3:+46785511 | None:intergenic |
| GGTGATTTGGTTCCAAGTGA+AGG | 0.610276 | 1.3:-46784117 | MS.gene24579:CDS |
| GGTACTGTAAGAAATTTCCC+TGG | 0.610293 | 1.3:-46783661 | MS.gene24579:CDS |
| TCCGATTCATCATCATCAGA+GGG | 0.611392 | 1.3:+46785512 | None:intergenic |
| GGAGTAAGATGGTTATGACT+AGG | 0.612089 | 1.3:+46783925 | None:intergenic |
| CTGTAGTCTCTATACTTGTG+TGG | 0.612896 | 1.3:+46784333 | None:intergenic |
| TGTAATCCTCAAATGTTCCA+GGG | 0.613886 | 1.3:+46783644 | None:intergenic |
| TTCATCGAGCAATAATAGAG+TGG | 0.615022 | 1.3:+46784734 | None:intergenic |
| CCCATTGTCAAACTATCAGG+AGG | 0.616830 | 1.3:-46783904 | MS.gene24579:CDS |
| GGAGGTAAATAAGAACTATG+AGG | 0.617027 | 1.3:-46784508 | MS.gene24579:CDS |
| AGATAAAGATGATACTAATG+AGG | 0.617215 | 1.3:-46784952 | MS.gene24579:CDS |
| TCGCTGGAAGAAAACTTTGG+TGG | 0.617745 | 1.3:-46784658 | MS.gene24579:CDS |
| TCAGCAATAGACACCTCAAG+TGG | 0.621486 | 1.3:+46785452 | None:intergenic |
| GGAGGGACTTAGTAAGCAAG+AGG | 0.623814 | 1.3:-46783980 | MS.gene24579:CDS |
| TTGGTTCTTGATGGAGACGA+TGG | 0.625464 | 1.3:-46785308 | MS.gene24579:CDS |
| GGTCTGGATGCAGACGAAGA+AGG | 0.626289 | 1.3:+46784004 | None:intergenic |
| CCACTAATCATCTTGACCTG+AGG | 0.627165 | 1.3:-46784710 | MS.gene24579:CDS |
| ATGAACAATTACACCTGATG+GGG | 0.627362 | 1.3:-46784896 | MS.gene24579:CDS |
| GGCTGATGTTAAGCCACTTG+AGG | 0.627689 | 1.3:-46785465 | MS.gene24579:CDS |
| CTACCTCCTGCTCAACCAGA+AGG | 0.630434 | 1.3:+46785087 | None:intergenic |
| TGAGGATGAGGCCCAAGTAG+AGG | 0.632111 | 1.3:-46784358 | MS.gene24579:CDS |
| TCAATAAGCTGCAGAAGTGG+CGG | 0.634944 | 1.3:+46784273 | None:intergenic |
| AGCACCATTAGGCCCAACAA+TGG | 0.640352 | 1.3:+46784170 | None:intergenic |
| GTGGGAACAACGTTGTAGGG+AGG | 0.657576 | 1.3:-46784526 | MS.gene24579:CDS |
| AGGAGGGCAGAAAGCTCGGG+TGG | 0.658600 | 1.3:-46783887 | MS.gene24579:CDS |
| ACTAACAAGAACAACTCCAC+CGG | 0.661104 | 1.3:+46783753 | None:intergenic |
| CCTACAAAATCCTTTAGTGG+GGG | 0.666533 | 1.3:-46784801 | MS.gene24579:CDS |
| AAGTAAGGGAAAGTTTGATG+AGG | 0.667604 | 1.3:-46784376 | MS.gene24579:CDS |
| AAATTCAGGACCATCTACAA+AGG | 0.671725 | 1.3:-46785705 | MS.gene24579:CDS |
| CGTCTGCATCCAGACCAGGA+GGG | 0.678505 | 1.3:-46783997 | MS.gene24579:CDS |
| TCGTCTGCATCCAGACCAGG+AGG | 0.681595 | 1.3:-46783998 | MS.gene24579:CDS |
| CCATTGTCAAACTATCAGGA+GGG | 0.685258 | 1.3:-46783903 | MS.gene24579:CDS |
| GTGTGTGTAAGGATGAAGAA+CGG | 0.687698 | 1.3:-46783708 | MS.gene24579:CDS |
| GCACTGCATAAATTCACCGG+TGG | 0.691518 | 1.3:-46783769 | MS.gene24579:CDS |
| GATTCATCATCATCAGAGGG+AGG | 0.699607 | 1.3:+46785515 | None:intergenic |
| CTTTAGCTACCCAAACCGGG+AGG | 0.713201 | 1.3:-46784244 | MS.gene24579:CDS |
| CAAGTATAGAGACTACAGCG+TGG | 0.794408 | 1.3:-46784328 | MS.gene24579:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAAACTTCATTTCTAT+CGG | - | chr1.3:46784750-46784769 | MS.gene24579:CDS | 20.0% |
| !!! | AATTATGATGCTTTTAAAAG+CGG | - | chr1.3:46784776-46784795 | MS.gene24579:CDS | 20.0% |
| ! | AAGAAAAAGTCAGAAAATTC+AGG | - | chr1.3:46783606-46783625 | MS.gene24579:CDS | 25.0% |
| ! | AGATAAAGATGATACTAATG+AGG | - | chr1.3:46784373-46784392 | MS.gene24579:CDS | 25.0% |
| ! | TCATCTAACAATAAAATGTG+AGG | + | chr1.3:46785490-46785509 | None:intergenic | 25.0% |
| ! | TTAGAAACATCTTTACTACA+TGG | + | chr1.3:46783651-46783670 | None:intergenic | 25.0% |
| ! | TTTCAAACTTCATTTCTATC+GGG | - | chr1.3:46784751-46784770 | MS.gene24579:CDS | 25.0% |
| !! | TAGTAAAGATGTTTCTAAGA+AGG | - | chr1.3:46783653-46783672 | MS.gene24579:CDS | 25.0% |
| !!! | ATTATGATGCTTTTAAAAGC+GGG | - | chr1.3:46784777-46784796 | MS.gene24579:CDS | 25.0% |
| !!! | TTCGAAGAAGATACTTTTTT+AGG | + | chr1.3:46783732-46783751 | None:intergenic | 25.0% |
| AGAAATTGAAAGCAGCTAAA+AGG | - | chr1.3:46784849-46784868 | MS.gene24579:CDS | 30.0% | |
| GTGCAAAACTTGGTAAATTT+GGG | - | chr1.3:46785374-46785393 | MS.gene24579:CDS | 30.0% | |
| TATGAACAATTACACCTGAT+GGG | - | chr1.3:46784428-46784447 | MS.gene24579:CDS | 30.0% | |
| TGAAGATATCTCATGGAAAA+CGG | - | chr1.3:46784123-46784142 | MS.gene24579:CDS | 30.0% | |
| TTCAAACTTCATTTCTATCG+GGG | - | chr1.3:46784752-46784771 | MS.gene24579:CDS | 30.0% | |
| TTCAACATTAGCTGAAACAA+CGG | + | chr1.3:46784291-46784310 | None:intergenic | 30.0% | |
| ! | CAAATTTACCAAGTTTTGCA+CGG | + | chr1.3:46785375-46785394 | None:intergenic | 30.0% |
| !! | TAAAATGTGAGGTTTTGACA+TGG | + | chr1.3:46785479-46785498 | None:intergenic | 30.0% |
| !!! | ATCAAAGATTTTAGCTGGTT+TGG | - | chr1.3:46784475-46784494 | MS.gene24579:CDS | 30.0% |
| !!! | TCAAAGATTTTAGCTGGTTT+GGG | - | chr1.3:46784476-46784495 | MS.gene24579:CDS | 30.0% |
| AAATTCAGGACCATCTACAA+AGG | - | chr1.3:46783620-46783639 | MS.gene24579:CDS | 35.0% | |
| AAATTTCCCTGGAACATTTG+AGG | - | chr1.3:46785675-46785694 | MS.gene24579:CDS | 35.0% | |
| AAGTAAGGGAAAGTTTGATG+AGG | - | chr1.3:46784949-46784968 | MS.gene24579:CDS | 35.0% | |
| ACACTTCTATATCTTCTAGC+TGG | - | chr1.3:46785187-46785206 | MS.gene24579:CDS | 35.0% | |
| ACGTCAATATTCTTAGGTAC+TGG | + | chr1.3:46784218-46784237 | None:intergenic | 35.0% | |
| AGAAGGACGTCAATATTCTT+AGG | + | chr1.3:46784224-46784243 | None:intergenic | 35.0% | |
| AGAAGTCAGAAATTGAGGAT+AGG | - | chr1.3:46785241-46785260 | MS.gene24579:CDS | 35.0% | |
| AGATGATACTAATGAGGAAG+AGG | - | chr1.3:46784379-46784398 | MS.gene24579:CDS | 35.0% | |
| ATATCTCATGGAAAACGGTA+TGG | - | chr1.3:46784128-46784147 | MS.gene24579:CDS | 35.0% | |
| ATGAACAATTACACCTGATG+GGG | - | chr1.3:46784429-46784448 | MS.gene24579:CDS | 35.0% | |
| ATGAAGAACGGAGTCAAATA+TGG | - | chr1.3:46785629-46785648 | MS.gene24579:CDS | 35.0% | |
| CGTGCAAAACTTGGTAAATT+TGG | - | chr1.3:46785373-46785392 | MS.gene24579:CDS | 35.0% | |
| GAAGTCAGAAATTGAGGATA+GGG | - | chr1.3:46785242-46785261 | MS.gene24579:CDS | 35.0% | |
| GCATCGAAAAGCAAAAGTAA+GGG | - | chr1.3:46784935-46784954 | MS.gene24579:CDS | 35.0% | |
| GGAGGTAAATAAGAACTATG+AGG | - | chr1.3:46784817-46784836 | MS.gene24579:CDS | 35.0% | |
| GTATGAACAATTACACCTGA+TGG | - | chr1.3:46784427-46784446 | MS.gene24579:CDS | 35.0% | |
| GTCCTACAAAATCCTTTAGT+GGG | - | chr1.3:46784522-46784541 | MS.gene24579:CDS | 35.0% | |
| GTGTTTCATCCATTGTTAGT+AGG | + | chr1.3:46785291-46785310 | None:intergenic | 35.0% | |
| TAAGAATATTGACGTCCTTC+TGG | - | chr1.3:46784223-46784242 | MS.gene24579:CDS | 35.0% | |
| TCATCGAGCAATAATAGAGT+GGG | + | chr1.3:46784593-46784612 | None:intergenic | 35.0% | |
| TCCTACAAAATCCTTTAGTG+GGG | - | chr1.3:46784523-46784542 | MS.gene24579:CDS | 35.0% | |
| TGAAGAACGGAGTCAAATAT+GGG | - | chr1.3:46785630-46785649 | MS.gene24579:CDS | 35.0% | |
| TGGAACATTTGAGGATTACA+AGG | - | chr1.3:46785684-46785703 | MS.gene24579:CDS | 35.0% | |
| TGTAATCCTCAAATGTTCCA+GGG | + | chr1.3:46785684-46785703 | None:intergenic | 35.0% | |
| TGTCCTACAAAATCCTTTAG+TGG | - | chr1.3:46784521-46784540 | MS.gene24579:CDS | 35.0% | |
| TTAATGTTGTCATCCCAAGT+CGG | - | chr1.3:46783991-46784010 | MS.gene24579:CDS | 35.0% | |
| TTCATCGAGCAATAATAGAG+TGG | + | chr1.3:46784594-46784613 | None:intergenic | 35.0% | |
| TTCCATATCCAGATGATTTG+TGG | + | chr1.3:46785515-46785534 | None:intergenic | 35.0% | |
| TTCGAAGAAGTCAGAAATTG+AGG | - | chr1.3:46785236-46785255 | MS.gene24579:CDS | 35.0% | |
| TTGTAATCCTCAAATGTTCC+AGG | + | chr1.3:46785685-46785704 | None:intergenic | 35.0% | |
| ! | AGCATCGAAAAGCAAAAGTA+AGG | - | chr1.3:46784934-46784953 | MS.gene24579:CDS | 35.0% |
| ! | ATATCTTCTAGCTGGTGATT+TGG | - | chr1.3:46785195-46785214 | MS.gene24579:CDS | 35.0% |
| ! | ATTGATTTCACGTGTGTGTA+AGG | - | chr1.3:46785606-46785625 | MS.gene24579:CDS | 35.0% |
| ! | CAAATATGGGTTGTTGAAGA+TGG | - | chr1.3:46785643-46785662 | MS.gene24579:CDS | 35.0% |
| ! | CATCTGGATATGGAAAGTAT+TGG | - | chr1.3:46785520-46785539 | MS.gene24579:CDS | 35.0% |
| ! | GGTTTTACAAAGGATATGCA+GGG | - | chr1.3:46784497-46784516 | MS.gene24579:CDS | 35.0% |
| ! | TCCATATCCAGATGATTTGT+GGG | + | chr1.3:46785514-46785533 | None:intergenic | 35.0% |
| ! | TTCATCCATACTTGCTAACA+TGG | + | chr1.3:46783697-46783716 | None:intergenic | 35.0% |
| !! | CAAGCATCAAAGATTTTAGC+TGG | - | chr1.3:46784470-46784489 | MS.gene24579:CDS | 35.0% |
| !! | GTTGATGTTGGCATTGATAT+GGG | - | chr1.3:46785121-46785140 | MS.gene24579:CDS | 35.0% |
| !! | TATGGAAAGTATTGGTGCAT+TGG | - | chr1.3:46785528-46785547 | MS.gene24579:CDS | 35.0% |
| !! | TGTTGATGTTGGCATTGATA+TGG | - | chr1.3:46785120-46785139 | MS.gene24579:CDS | 35.0% |
| !! | TTGATGTTGGCATTGATATG+GGG | - | chr1.3:46785122-46785141 | MS.gene24579:CDS | 35.0% |
| !!! | AGATATTTTAGCTGCCCATT+TGG | - | chr1.3:46783923-46783942 | MS.gene24579:CDS | 35.0% |
| ACCCACAAATCATCTGGATA+TGG | - | chr1.3:46785510-46785529 | MS.gene24579:CDS | 40.0% | |
| ACTAACAAGAACAACTCCAC+CGG | + | chr1.3:46785575-46785594 | None:intergenic | 40.0% | |
| ACTCCCATTGTCAAACTATC+AGG | - | chr1.3:46785418-46785437 | MS.gene24579:CDS | 40.0% | |
| ACTTCAATAAGCTGCAGAAG+TGG | + | chr1.3:46785058-46785077 | None:intergenic | 40.0% | |
| AGACAAGGCTCAACAAGATA+AGG | - | chr1.3:46784877-46784896 | MS.gene24579:CDS | 40.0% | |
| AGACTCTCAGATGTTGATGT+TGG | - | chr1.3:46785109-46785128 | MS.gene24579:CDS | 40.0% | |
| AGATGAACCCACAAATCATC+TGG | - | chr1.3:46785504-46785523 | MS.gene24579:CDS | 40.0% | |
| CACTAATCATCTTGACCTGA+GGG | - | chr1.3:46784616-46784635 | MS.gene24579:CDS | 40.0% | |
| CCATTGTCAAACTATCAGGA+GGG | - | chr1.3:46785422-46785441 | MS.gene24579:CDS | 40.0% | |
| CCTACAAAATCCTTTAGTGG+GGG | - | chr1.3:46784524-46784543 | MS.gene24579:CDS | 40.0% | |
| CCTCCTGATAGTTTGACAAT+GGG | + | chr1.3:46785424-46785443 | None:intergenic | 40.0% | |
| CTCAGGTCAAGATGATTAGT+GGG | + | chr1.3:46784617-46784636 | None:intergenic | 40.0% | |
| CTGTAGTCTCTATACTTGTG+TGG | + | chr1.3:46784995-46785014 | None:intergenic | 40.0% | |
| CTTTGTGGACCTACTAACAA+TGG | - | chr1.3:46785279-46785298 | MS.gene24579:CDS | 40.0% | |
| GAGATATTCCCAACACTTTG+TGG | - | chr1.3:46785264-46785283 | MS.gene24579:CDS | 40.0% | |
| GATCTACAAAATGCAGCTTC+AGG | - | chr1.3:46784338-46784357 | MS.gene24579:CDS | 40.0% | |
| GATGCACTGCATAAATTCAC+CGG | - | chr1.3:46785553-46785572 | MS.gene24579:CDS | 40.0% | |
| GCAAAGAAAGAAGCTCTTAG+AGG | - | chr1.3:46783954-46783973 | MS.gene24579:CDS | 40.0% | |
| GCATCAGTGAAGATATCTCA+TGG | - | chr1.3:46784116-46784135 | MS.gene24579:CDS | 40.0% | |
| GGAGCATGAGCAAAAACATA+GGG | - | chr1.3:46783839-46783858 | MS.gene24579:CDS | 40.0% | |
| GGAGTAAGATGGTTATGACT+AGG | + | chr1.3:46785403-46785422 | None:intergenic | 40.0% | |
| GGTACTGTAAGAAATTTCCC+TGG | - | chr1.3:46785664-46785683 | MS.gene24579:CDS | 40.0% | |
| GTGTGTGTAAGGATGAAGAA+CGG | - | chr1.3:46785617-46785636 | MS.gene24579:CDS | 40.0% | |
| GTTTGACAATGGGAGTAAGA+TGG | + | chr1.3:46785414-46785433 | None:intergenic | 40.0% | |
| TAATGTTGTCATCCCAAGTC+GGG | - | chr1.3:46783992-46784011 | MS.gene24579:CDS | 40.0% | |
| TCAGTGTATGCAGAAGCTTT+CGG | + | chr1.3:46783777-46783796 | None:intergenic | 40.0% | |
| TCATGGAAAACGGTATGGTT+TGG | - | chr1.3:46784133-46784152 | MS.gene24579:CDS | 40.0% | |
| TCCGATTCATCATCATCAGA+GGG | + | chr1.3:46783816-46783835 | None:intergenic | 40.0% | |
| TCTCAGAGCATACTGTATTG+AGG | + | chr1.3:46784715-46784734 | None:intergenic | 40.0% | |
| TTAGTAGGTCCACAAAGTGT+TGG | + | chr1.3:46785276-46785295 | None:intergenic | 40.0% | |
| TTCCGATTCATCATCATCAG+AGG | + | chr1.3:46783817-46783836 | None:intergenic | 40.0% | |
| TTGAAAGCAGCTAAAAGGAC+TGG | - | chr1.3:46784854-46784873 | MS.gene24579:CDS | 40.0% | |
| TTGACTTTCCCATTCCATTC+GGG | + | chr1.3:46784163-46784182 | None:intergenic | 40.0% | |
| ! | AATTTTTCTGTGTCTGCTCG+TGG | - | chr1.3:46784074-46784093 | MS.gene24579:CDS | 40.0% |
| ! | AGGAGCATGAGCAAAAACAT+AGG | - | chr1.3:46783838-46783857 | MS.gene24579:CDS | 40.0% |
| ! | CATGGTTTAGCCTTTGTAGA+TGG | + | chr1.3:46783633-46783652 | None:intergenic | 40.0% |
| ! | GGGTTTTACAAAGGATATGC+AGG | - | chr1.3:46784496-46784515 | MS.gene24579:CDS | 40.0% |
| ! | GTAGATTTTCCAGCACCATT+AGG | + | chr1.3:46785169-46785188 | None:intergenic | 40.0% |
| ! | GTTGACTTTCCCATTCCATT+CGG | + | chr1.3:46784164-46784183 | None:intergenic | 40.0% |
| ! | TAGTAGGTCCACAAAGTGTT+GGG | + | chr1.3:46785275-46785294 | None:intergenic | 40.0% |
| ! | TCCCTCTGATGATGATGAAT+CGG | - | chr1.3:46783812-46783831 | MS.gene24579:CDS | 40.0% |
| ! | TGATGATGATGAATCGGAAG+AGG | - | chr1.3:46783818-46783837 | MS.gene24579:CDS | 40.0% |
| !! | ATGATGCTTTTAAAAGCGGG+TGG | - | chr1.3:46784780-46784799 | MS.gene24579:CDS | 40.0% |
| !! | TGATGCTTTTAAAAGCGGGT+GGG | - | chr1.3:46784781-46784800 | MS.gene24579:CDS | 40.0% |
| !!! | AGCTGGTTTGGGTTTTACAA+AGG | - | chr1.3:46784487-46784506 | MS.gene24579:CDS | 40.0% |
| !!! | CACTTTTGAAGCTTCTTGCT+TGG | - | chr1.3:46784183-46784202 | MS.gene24579:CDS | 40.0% |
| !!! | TTTTGAAGCTTCTTGCTTGG+AGG | - | chr1.3:46784186-46784205 | MS.gene24579:CDS | 40.0% |
| AATGCAGCTTCAGGTGAAGA+AGG | - | chr1.3:46784347-46784366 | MS.gene24579:CDS | 45.0% | |
| ACTAATGAGGAAGAGGATGC+AGG | - | chr1.3:46784386-46784405 | MS.gene24579:CDS | 45.0% | |
| ACTTGTGTGGTACCTCTACT+TGG | + | chr1.3:46784982-46785001 | None:intergenic | 45.0% | |
| AGCTAAAAGGACTGGAGACA+AGG | - | chr1.3:46784862-46784881 | MS.gene24579:CDS | 45.0% | |
| CAAGTATAGAGACTACAGCG+TGG | - | chr1.3:46784997-46785016 | MS.gene24579:CDS | 45.0% | |
| CCACTAATCATCTTGACCTG+AGG | - | chr1.3:46784615-46784634 | MS.gene24579:CDS | 45.0% | |
| CCCATTGTCAAACTATCAGG+AGG | - | chr1.3:46785421-46785440 | MS.gene24579:CDS | 45.0% | |
| CCCTCCTGATAGTTTGACAA+TGG | + | chr1.3:46785425-46785444 | None:intergenic | 45.0% | |
| CCTCAGGTCAAGATGATTAG+TGG | + | chr1.3:46784618-46784637 | None:intergenic | 45.0% | |
| CTCTGCCATGTTAGCAAGTA+TGG | - | chr1.3:46783689-46783708 | MS.gene24579:CDS | 45.0% | |
| CTTCGAAGTTCACCTTCACT+TGG | + | chr1.3:46785223-46785242 | None:intergenic | 45.0% | |
| CTTGTGTGGTACCTCTACTT+GGG | + | chr1.3:46784981-46785000 | None:intergenic | 45.0% | |
| CTTTGCCTGTTCAGCCAAAT+GGG | + | chr1.3:46783940-46783959 | None:intergenic | 45.0% | |
| GATTCATCATCATCAGAGGG+AGG | + | chr1.3:46783813-46783832 | None:intergenic | 45.0% | |
| GGCTCAACAAGATAAGGTGA+AGG | - | chr1.3:46784883-46784902 | MS.gene24579:CDS | 45.0% | |
| GGGAAAGTTTGATGAGGATG+AGG | - | chr1.3:46784955-46784974 | MS.gene24579:CDS | 45.0% | |
| TCAATAAGCTGCAGAAGTGG+CGG | + | chr1.3:46785055-46785074 | None:intergenic | 45.0% | |
| TCAGCAATAGACACCTCAAG+TGG | + | chr1.3:46783876-46783895 | None:intergenic | 45.0% | |
| TCGCTGGAAGAAAACTTTGG+TGG | - | chr1.3:46784667-46784686 | MS.gene24579:CDS | 45.0% | |
| TCTTTGCCTGTTCAGCCAAA+TGG | + | chr1.3:46783941-46783960 | None:intergenic | 45.0% | |
| ! | CCCCCACTAAAGGATTTTGT+AGG | + | chr1.3:46784527-46784546 | None:intergenic | 45.0% |
| ! | GTGTCGCTGGAAGAAAACTT+TGG | - | chr1.3:46784664-46784683 | MS.gene24579:CDS | 45.0% |
| ! | TGAGCTTTAGCTACCCAAAC+CGG | - | chr1.3:46785077-46785096 | MS.gene24579:CDS | 45.0% |
| ! | TTGGTTCTTGATGGAGACGA+TGG | - | chr1.3:46784017-46784036 | MS.gene24579:CDS | 45.0% |
| !! | AGACGAAGAAGGTACTGAAC+AGG | + | chr1.3:46785313-46785332 | None:intergenic | 45.0% |
| !! | GGAAAACGGTATGGTTTGGT+TGG | - | chr1.3:46784137-46784156 | MS.gene24579:CDS | 45.0% |
| !! | GGTGATTTGGTTCCAAGTGA+AGG | - | chr1.3:46785208-46785227 | MS.gene24579:CDS | 45.0% |
| !! | TAGAAGAGTACTTGTGTCGC+TGG | - | chr1.3:46784651-46784670 | MS.gene24579:CDS | 45.0% |
| !!! | TTCGGAGCAGGTTTTGACTT+CGG | + | chr1.3:46783759-46783778 | None:intergenic | 45.0% |
| AGCACCATTAGGCCCAACAA+TGG | + | chr1.3:46785158-46785177 | None:intergenic | 50.0% | |
| ATTGTTGGGCCTAATGGTGC+TGG | - | chr1.3:46785157-46785176 | MS.gene24579:CDS | 50.0% | |
| CAAAATCCTTTAGTGGGGGC+TGG | - | chr1.3:46784528-46784547 | MS.gene24579:CDS | 50.0% | |
| CAAGAACCAAAGCCCGACTT+GGG | + | chr1.3:46784007-46784026 | None:intergenic | 50.0% | |
| CTTGCTTACTAAGTCCCTCC+TGG | + | chr1.3:46785345-46785364 | None:intergenic | 50.0% | |
| GCACTGCATAAATTCACCGG+TGG | - | chr1.3:46785556-46785575 | MS.gene24579:CDS | 50.0% | |
| GCTCTGTAGGTTCAGGAAAG+TGG | + | chr1.3:46785027-46785046 | None:intergenic | 50.0% | |
| GGACTCGTGTTGCCATTGTT+GGG | - | chr1.3:46785143-46785162 | MS.gene24579:CDS | 50.0% | |
| GGAGGGACTTAGTAAGCAAG+AGG | - | chr1.3:46785345-46785364 | MS.gene24579:CDS | 50.0% | |
| GGCTGATGTTAAGCCACTTG+AGG | - | chr1.3:46783860-46783879 | MS.gene24579:CDS | 50.0% | |
| GTTGCCATTGTTGGGCCTAA+TGG | - | chr1.3:46785151-46785170 | MS.gene24579:CDS | 50.0% | |
| TATCAGGAGGGCAGAAAGCT+CGG | - | chr1.3:46785434-46785453 | MS.gene24579:CDS | 50.0% | |
| TATGCAGAAGCTTTCGGAGC+AGG | + | chr1.3:46783771-46783790 | None:intergenic | 50.0% | |
| TCAAGAACCAAAGCCCGACT+TGG | + | chr1.3:46784008-46784027 | None:intergenic | 50.0% | |
| TTACTAAGTCCCTCCTGGTC+TGG | + | chr1.3:46785340-46785359 | None:intergenic | 50.0% | |
| ! | AGTCTGAAATCCTCCCGGTT+TGG | + | chr1.3:46785094-46785113 | None:intergenic | 50.0% |
| ! | CTGAGAGTCTGAAATCCTCC+CGG | + | chr1.3:46785099-46785118 | None:intergenic | 50.0% |
| ! | GAGCTTTAGCTACCCAAACC+GGG | - | chr1.3:46785078-46785097 | MS.gene24579:CDS | 50.0% |
| ! | GTCTGAAATCCTCCCGGTTT+GGG | + | chr1.3:46785093-46785112 | None:intergenic | 50.0% |
| ! | TTGGTTGGCCCGAATGGAAT+GGG | - | chr1.3:46784152-46784171 | MS.gene24579:CDS | 50.0% |
| ! | TTTGGTTGGCCCGAATGGAA+TGG | - | chr1.3:46784151-46784170 | MS.gene24579:CDS | 50.0% |
| !! | AGTCGGGCTTTGGTTCTTGA+TGG | - | chr1.3:46784008-46784027 | MS.gene24579:CDS | 50.0% |
| !! | TATGGTTTGGTTGGCCCGAA+TGG | - | chr1.3:46784146-46784165 | MS.gene24579:CDS | 50.0% |
| AATCCTTTAGTGGGGGCTGG+AGG | - | chr1.3:46784531-46784550 | MS.gene24579:CDS | 55.0% | |
| AGCTGCCCATTTGGCTGAAC+AGG | - | chr1.3:46783932-46783951 | MS.gene24579:CDS | 55.0% | |
| ATCAGGAGGGCAGAAAGCTC+GGG | - | chr1.3:46785435-46785454 | MS.gene24579:CDS | 55.0% | |
| CGGGTGGGAACAACGTTGTA+GGG | - | chr1.3:46784796-46784815 | MS.gene24579:CDS | 55.0% | |
| CTAACCAGAGAACAGCCCTC+AGG | + | chr1.3:46784634-46784653 | None:intergenic | 55.0% | |
| CTACCTCCTGCTCAACCAGA+AGG | + | chr1.3:46784241-46784260 | None:intergenic | 55.0% | |
| CTGGTTGAGCAGGAGGTAGT+TGG | - | chr1.3:46784242-46784261 | MS.gene24579:CDS | 55.0% | |
| CTTTAGCTACCCAAACCGGG+AGG | - | chr1.3:46785081-46785100 | MS.gene24579:CDS | 55.0% | |
| GAGGCTGTCCGTGCAAAACT+TGG | - | chr1.3:46785364-46785383 | MS.gene24579:CDS | 55.0% | |
| GGGACTCGTGTTGCCATTGT+TGG | - | chr1.3:46785142-46785161 | MS.gene24579:CDS | 55.0% | |
| GGTCTGGATGCAGACGAAGA+AGG | + | chr1.3:46785324-46785343 | None:intergenic | 55.0% | |
| GGTGTGAGCTCTGTAGGTTC+AGG | + | chr1.3:46785034-46785053 | None:intergenic | 55.0% | |
| GTGGGAACAACGTTGTAGGG+AGG | - | chr1.3:46784799-46784818 | MS.gene24579:CDS | 55.0% | |
| TCTTCGTCTGCATCCAGACC+AGG | - | chr1.3:46785324-46785343 | MS.gene24579:CDS | 55.0% | |
| TGAGGATGAGGCCCAAGTAG+AGG | - | chr1.3:46784967-46784986 | MS.gene24579:CDS | 55.0% | |
| TGTCATCCCAAGTCGGGCTT+TGG | - | chr1.3:46783998-46784017 | MS.gene24579:CDS | 55.0% | |
| TTGACCTGAGGGCTGTTCTC+TGG | - | chr1.3:46784627-46784646 | MS.gene24579:CDS | 55.0% | |
| ! | TGACGTCCTTCTGGTTGAGC+AGG | - | chr1.3:46784232-46784251 | MS.gene24579:CDS | 55.0% |
| AGTGGCGGTGTGAGCTCTGT+AGG | + | chr1.3:46785040-46785059 | None:intergenic | 60.0% | |
| CAGCAGCATCAGACCCCATC+AGG | + | chr1.3:46784445-46784464 | None:intergenic | 60.0% | |
| CATCCTCCAGCCCCCACTAA+AGG | + | chr1.3:46784537-46784556 | None:intergenic | 60.0% | |
| CGTCTGCATCCAGACCAGGA+GGG | - | chr1.3:46785328-46785347 | MS.gene24579:CDS | 60.0% | |
| GCGGGTGGGAACAACGTTGT+AGG | - | chr1.3:46784795-46784814 | MS.gene24579:CDS | 60.0% | |
| TCGTCTGCATCCAGACCAGG+AGG | - | chr1.3:46785327-46785346 | MS.gene24579:CDS | 60.0% | |
| ! | CGTCCTTCTGGTTGAGCAGG+AGG | - | chr1.3:46784235-46784254 | MS.gene24579:CDS | 60.0% |
| AGGAGGGCAGAAAGCTCGGG+TGG | - | chr1.3:46785438-46785457 | MS.gene24579:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 46783600 | 46785747 | 46783600 | ID=MS.gene24579 |
| chr1.3 | mRNA | 46783600 | 46785747 | 46783600 | ID=MS.gene24579.t1;Parent=MS.gene24579 |
| chr1.3 | exon | 46783600 | 46785747 | 46783600 | ID=MS.gene24579.t1.exon1;Parent=MS.gene24579.t1 |
| chr1.3 | CDS | 46783600 | 46785747 | 46783600 | ID=cds.MS.gene24579.t1;Parent=MS.gene24579.t1 |
| Gene Sequence |
| Protein sequence |
