AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24612

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24612.t1 MTR_1g064230 97.857 280 6 0 1 280 1 280 0.0 548
MS.gene24612.t1 MTR_4g104470 50.739 203 76 2 81 280 119 300 6.49e-61 195
MS.gene24612.t1 MTR_3g075500 41.786 280 131 6 15 278 25 288 4.10e-59 190
MS.gene24612.t1 MTR_3g075500 40.613 261 123 6 15 259 25 269 3.52e-51 169
MS.gene24612.t1 MTR_3g075500 45.977 87 44 1 195 278 108 194 4.87e-17 79.3
MS.gene24612.t1 MTR_3g075500 43.662 71 40 0 79 149 201 271 1.06e-13 69.7
MS.gene24612.t1 MTR_7g106440 37.762 286 135 7 12 275 27 291 4.69e-49 165
MS.gene24612.t1 MTR_1g045510 38.119 202 104 2 74 275 103 283 7.14e-45 153
MS.gene24612.t1 MTR_1g056520 41.270 189 98 1 84 272 108 283 1.36e-44 153
MS.gene24612.t1 MTR_3g027140 36.111 252 127 6 27 272 12 235 8.22e-37 131
MS.gene24612.t1 MTR_4g070080 50.602 83 41 0 192 274 2 84 5.60e-23 91.7
MS.gene24612.t1 MTR_4g070080 40.541 74 44 0 85 158 7 80 7.81e-12 61.6
MS.gene24612.t1 MTR_4g070080 50.617 81 40 0 192 272 2 82 3.67e-22 90.5
MS.gene24612.t1 MTR_4g070080 40.541 74 44 0 85 158 7 80 1.89e-11 61.6
MS.gene24612.t1 MTR_4g070140 50.588 85 42 0 190 274 2 86 1.11e-20 87.4
MS.gene24612.t1 MTR_4g070140 43.243 74 42 0 85 158 9 82 3.52e-13 67.0
MS.gene24612.t1 MTR_4g109540 48.148 81 42 0 197 277 43 123 1.12e-20 89.4
MS.gene24612.t1 MTR_4g109540 41.667 84 49 0 81 164 39 122 2.02e-14 72.0
MS.gene24612.t1 MTR_4g070190 47.619 84 44 0 191 274 3 86 1.29e-20 86.7
MS.gene24612.t1 MTR_4g070190 41.892 74 43 0 85 158 9 82 5.90e-12 63.2
MS.gene24612.t1 MTR_7g013740 43.023 86 49 0 192 277 36 121 2.76e-20 85.1
MS.gene24612.t1 MTR_7g013740 41.250 80 47 0 85 164 41 120 2.55e-13 66.2
MS.gene24612.t1 MTR_2g022950 30.366 191 115 3 86 275 62 235 6.62e-20 87.4
MS.gene24612.t1 MTR_2g022950 30.366 191 115 3 86 275 62 235 8.91e-20 86.7
MS.gene24612.t1 MTR_3g084040 50.602 83 40 1 194 276 34 115 1.25e-19 83.6
MS.gene24612.t1 MTR_3g084040 42.466 73 41 1 85 157 37 108 8.86e-11 59.3
MS.gene24612.t1 MTR_4g109540 48.148 81 42 0 197 277 51 131 1.44e-19 86.3
MS.gene24612.t1 MTR_4g109540 38.043 92 49 1 81 164 39 130 5.97e-12 65.1
MS.gene24612.t1 MTR_3g025880 46.667 90 48 0 191 280 39 128 1.75e-19 88.2
MS.gene24612.t1 MTR_3g025880 39.744 78 47 0 81 158 41 118 1.77e-11 64.3
MS.gene24612.t1 MTR_2g022950 30.366 191 115 3 86 275 62 235 3.68e-19 86.7
MS.gene24612.t1 MTR_2g022950 30.570 193 114 6 82 270 153 329 4.48e-16 77.8
MS.gene24612.t1 MTR_2g097960 32.143 196 107 6 86 278 17 189 5.19e-19 86.7
MS.gene24612.t1 MTR_2g097960 27.273 231 134 7 70 279 94 311 2.63e-13 69.7
MS.gene24612.t1 MTR_3g101370 30.612 196 113 5 83 275 92 267 2.71e-18 83.2
MS.gene24612.t1 MTR_4g131970 28.899 218 128 7 70 279 153 351 3.07e-18 84.3
MS.gene24612.t1 MTR_4g131970 29.231 195 114 4 84 275 74 247 6.33e-17 80.5
MS.gene24612.t1 MTR_3g080130 43.902 82 46 0 196 277 36 117 4.91e-18 79.0
MS.gene24612.t1 MTR_3g080130 41.250 80 47 0 85 164 37 116 1.34e-14 69.7
MS.gene24612.t1 MTR_7g013730 40.476 84 50 0 197 280 41 124 8.50e-18 80.9
MS.gene24612.t1 MTR_7g013730 41.892 74 43 0 85 158 41 114 1.34e-13 69.3
MS.gene24612.t1 MTR_1g020080 28.638 213 135 5 70 280 176 373 1.18e-17 82.4
MS.gene24612.t1 MTR_1g020080 28.866 194 118 3 83 275 96 270 4.42e-16 78.2
MS.gene24612.t1 MTR_2g026180 29.082 196 123 6 85 276 5 188 1.27e-17 82.8
MS.gene24612.t1 MTR_3g101370 30.612 196 113 5 83 275 92 267 1.87e-17 82.0
MS.gene24612.t1 MTR_3g101370 28.037 214 136 6 70 280 172 370 2.32e-16 79.0
MS.gene24612.t1 MTR_1g020080 28.866 194 118 3 83 275 96 270 1.08e-16 79.0
MS.gene24612.t1 MTR_5g097580 29.630 189 118 5 85 272 7 181 1.18e-16 80.1
MS.gene24612.t1 MTR_5g097580 29.630 189 118 5 85 272 7 181 1.35e-16 79.7
MS.gene24612.t1 MTR_3g103420 31.122 196 127 4 81 275 7 195 3.37e-16 78.2
MS.gene24612.t1 MTR_4g086600 29.082 196 122 3 86 280 118 297 3.72e-16 78.2
MS.gene24612.t1 MTR_4g086600 27.979 193 125 5 86 270 216 402 6.01e-12 65.9
MS.gene24612.t1 MTR_4g085540 29.897 194 111 3 86 279 36 204 3.80e-16 78.6
MS.gene24612.t1 MTR_4g085540 27.320 194 119 4 86 279 124 295 5.03e-16 78.2
MS.gene24612.t1 MTR_4g085540 27.041 196 129 4 86 279 215 398 3.76e-12 66.6
MS.gene24612.t1 MTR_3g082650 24.873 197 116 4 85 278 19 186 1.29e-15 76.3
MS.gene24612.t1 MTR_3g055990 28.571 189 120 5 85 272 7 181 1.45e-15 76.6
MS.gene24612.t1 MTR_3g055990 28.571 189 120 5 85 272 7 181 1.57e-15 76.6
MS.gene24612.t1 MTR_1g019150 28.804 184 106 4 86 269 34 192 2.33e-15 76.3
MS.gene24612.t1 MTR_1g019150 25.000 196 121 4 86 279 122 293 2.47e-12 67.4
MS.gene24612.t1 MTR_7g102730 25.773 194 122 4 86 279 100 271 3.28e-15 75.9
MS.gene24612.t1 MTR_7g102730 26.606 218 142 6 63 278 172 373 4.23e-14 72.4
MS.gene24612.t1 MTR_4g124940 29.101 189 103 3 86 272 48 207 3.79e-15 75.1
MS.gene24612.t1 MTR_4g124940 30.256 195 123 3 85 270 132 322 8.37e-14 71.2
MS.gene24612.t1 MTR_5g030020 28.283 198 120 4 83 277 95 273 3.79e-15 74.7
MS.gene24612.t1 MTR_1g073690 29.146 199 123 6 85 276 7 194 1.87e-14 73.2
MS.gene24612.t1 MTR_7g105260 43.902 82 46 0 197 278 33 114 2.50e-14 68.9
MS.gene24612.t1 MTR_7g105260 34.951 103 57 1 85 187 33 125 2.57e-12 63.5
MS.gene24612.t1 MTR_1g097440 29.412 187 107 3 83 269 29 190 4.49e-14 72.4
MS.gene24612.t1 MTR_6g040070 29.231 195 114 5 86 279 17 188 5.52e-14 72.4
MS.gene24612.t1 MTR_6g040070 26.154 195 133 5 86 279 107 291 4.91e-13 69.3
MS.gene24612.t1 MTR_3g099590 26.271 236 146 7 41 272 48 259 8.01e-14 70.5
MS.gene24612.t1 MTR_3g095230 28.421 190 123 6 83 270 213 391 8.32e-14 71.6
MS.gene24612.t1 MTR_3g095230 40.964 83 47 2 78 159 311 392 4.25e-11 63.5
MS.gene24612.t1 MTR_3g095230 28.421 190 123 6 83 270 213 391 8.87e-14 71.6
MS.gene24612.t1 MTR_3g095230 40.964 83 47 2 78 159 311 392 4.48e-11 63.5
MS.gene24612.t1 MTR_8g092550 28.947 190 121 7 83 270 200 377 2.31e-13 70.1
MS.gene24612.t1 MTR_8g092550 40.964 83 47 2 78 159 297 378 7.73e-11 62.8
MS.gene24612.t1 MTR_1g061870 26.289 194 121 4 86 279 105 276 2.62e-13 70.1
MS.gene24612.t1 MTR_1g061870 28.061 196 123 5 86 279 196 375 7.17e-12 65.9
MS.gene24612.t1 MTR_6g040190 28.205 195 113 5 86 279 115 283 3.52e-13 69.7
MS.gene24612.t1 MTR_6g040190 28.426 197 126 7 86 279 202 386 3.49e-12 66.6
MS.gene24612.t1 MTR_3g109090 27.807 187 108 3 86 272 62 221 3.74e-13 69.3
MS.gene24612.t1 MTR_3g109090 26.154 195 130 2 86 270 147 337 6.59e-13 68.6
MS.gene24612.t1 MTR_3g109090 27.807 187 108 3 86 272 46 205 3.89e-13 69.3
MS.gene24612.t1 MTR_3g109090 26.154 195 130 2 86 270 131 321 6.87e-13 68.6
MS.gene24612.t1 MTR_3g084040 46.970 66 34 1 194 259 34 98 7.10e-13 63.9
MS.gene24612.t1 MTR_8g022050 28.270 237 142 6 47 270 118 339 8.48e-13 68.2
MS.gene24612.t1 MTR_8g022050 26.866 201 118 3 74 272 50 223 3.32e-12 66.6
MS.gene24612.t1 MTR_3g014000 42.857 77 37 1 206 275 40 116 1.06e-12 64.3
MS.gene24612.t1 MTR_3g029580 32.967 91 61 0 85 175 33 123 2.37e-12 63.5
MS.gene24612.t1 MTR_6g004810 22.335 197 121 4 85 278 46 213 3.01e-12 66.6
MS.gene24612.t1 MTR_4g104450 36.975 119 58 3 127 244 2 104 7.08e-12 61.2
MS.gene24612.t1 MTR_1g097280 31.452 124 68 3 81 201 26 135 8.45e-12 65.5
MS.gene24612.t1 MTR_3g102040 28.230 209 136 4 73 279 192 388 1.41e-11 65.1
MS.gene24612.t1 MTR_3g102040 26.904 197 118 4 86 280 114 286 2.14e-11 64.3
MS.gene24612.t1 MTR_4g063560 34.615 78 51 0 80 157 29 106 1.65e-11 60.5
MS.gene24612.t1 MTR_4g063560 33.333 81 54 0 193 273 30 110 9.92e-11 58.2
MS.gene24612.t1 MTR_5g017280 27.749 191 110 5 83 272 3 166 2.08e-11 63.9
MS.gene24612.t1 MTR_5g017280 27.749 191 110 5 83 272 3 166 2.08e-11 63.9
MS.gene24612.t1 MTR_1g036430 26.263 198 116 7 81 254 159 350 2.16e-11 64.3
MS.gene24612.t1 MTR_2g096560 39.744 78 47 0 85 162 8 85 2.74e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24612.t1 AT2G37220 63.136 236 80 3 49 279 54 287 8.90e-93 276
MS.gene24612.t1 AT2G37220 45.238 84 46 0 85 168 205 288 6.05e-17 79.3
MS.gene24612.t1 AT4G24770 49.083 218 93 1 62 279 128 327 1.08e-59 193
MS.gene24612.t1 AT4G24770 49.083 218 93 1 62 279 128 327 1.08e-59 193
MS.gene24612.t1 AT5G50250 42.268 291 135 5 2 278 18 289 1.09e-59 191
MS.gene24612.t1 AT3G52380 45.078 193 97 3 85 277 117 300 6.10e-48 162
MS.gene24612.t1 AT1G60000 35.971 278 149 6 4 275 2 256 2.62e-45 154
MS.gene24612.t1 AT3G53460 58.101 179 56 6 16 177 14 190 1.02e-44 154
MS.gene24612.t1 AT3G53460 68.675 83 26 0 196 278 257 339 2.47e-33 124
MS.gene24612.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.45e-19 85.1
MS.gene24612.t1 AT3G53460 45.882 85 46 0 195 279 98 182 5.95e-13 68.6
MS.gene24612.t1 AT3G53460 58.101 179 56 6 16 177 14 190 1.02e-44 154
MS.gene24612.t1 AT3G53460 68.675 83 26 0 196 278 257 339 2.47e-33 124
MS.gene24612.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.45e-19 85.1
MS.gene24612.t1 AT3G53460 45.882 85 46 0 195 279 98 182 5.95e-13 68.6
MS.gene24612.t1 AT3G53460 58.101 179 56 6 16 177 14 190 1.02e-44 154
MS.gene24612.t1 AT3G53460 68.675 83 26 0 196 278 257 339 2.47e-33 124
MS.gene24612.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.45e-19 85.1
MS.gene24612.t1 AT3G53460 45.882 85 46 0 195 279 98 182 5.95e-13 68.6
MS.gene24612.t1 AT3G53460 52.500 200 55 7 16 177 14 211 5.19e-41 145
MS.gene24612.t1 AT3G53460 68.675 83 26 0 196 278 278 360 3.33e-33 124
MS.gene24612.t1 AT3G53460 48.810 84 43 0 85 168 279 362 8.98e-19 85.5
MS.gene24612.t1 AT3G52150 41.026 195 104 2 78 272 70 253 4.08e-40 140
MS.gene24612.t1 AT3G52150 41.026 195 104 2 78 272 70 253 4.08e-40 140
MS.gene24612.t1 AT2G35410 30.712 267 157 6 11 269 22 268 3.52e-29 113
MS.gene24612.t1 AT1G01080 35.263 190 102 3 86 269 110 284 1.48e-25 102
MS.gene24612.t1 AT1G01080 35.079 191 102 4 86 269 110 285 1.00e-24 100
MS.gene24612.t1 AT1G01080 35.503 169 101 2 86 254 110 270 4.79e-24 99.0
MS.gene24612.t1 AT3G23830 53.750 80 37 0 196 275 35 114 5.65e-23 92.0
MS.gene24612.t1 AT3G23830 40.000 85 49 1 85 167 36 120 3.16e-13 65.9
MS.gene24612.t1 AT3G23830 53.750 80 37 0 196 275 35 114 5.65e-23 92.0
MS.gene24612.t1 AT3G23830 40.000 85 49 1 85 167 36 120 3.16e-13 65.9
MS.gene24612.t1 AT4G13850 51.250 80 39 0 197 276 36 115 2.22e-22 90.1
MS.gene24612.t1 AT4G13850 40.000 80 48 0 85 164 36 115 3.27e-13 65.9
MS.gene24612.t1 AT4G13850 51.250 80 39 0 197 276 36 115 3.13e-22 90.5
MS.gene24612.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.17e-13 66.6
MS.gene24612.t1 AT4G13850 51.250 80 39 0 197 276 36 115 3.95e-22 90.5
MS.gene24612.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.63e-13 66.6
MS.gene24612.t1 AT4G13850 51.250 80 39 0 197 276 36 115 4.48e-22 90.5
MS.gene24612.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.92e-13 66.6
MS.gene24612.t1 AT2G21660 50.000 82 41 0 191 272 3 84 6.63e-21 87.4
MS.gene24612.t1 AT2G21660 41.892 74 43 0 85 158 9 82 3.04e-11 60.8
MS.gene24612.t1 AT2G21660 50.000 82 41 0 191 272 3 84 9.99e-21 87.4
MS.gene24612.t1 AT2G21660 41.892 74 43 0 85 158 9 82 4.14e-11 60.8
MS.gene24612.t1 AT3G16380 29.553 291 168 9 1 278 119 385 9.91e-20 89.0
MS.gene24612.t1 AT3G16380 30.412 194 112 5 86 279 114 284 2.03e-14 73.6
MS.gene24612.t1 AT4G14300 32.653 196 118 6 85 276 7 192 5.12e-19 86.7
MS.gene24612.t1 AT4G14300 32.653 196 118 6 85 276 7 192 5.12e-19 86.7
MS.gene24612.t1 AT5G61030 45.783 83 45 0 194 276 38 120 6.13e-19 85.1
MS.gene24612.t1 AT5G61030 44.595 74 41 0 85 158 41 114 2.02e-12 66.6
MS.gene24612.t1 AT5G61030 45.783 83 45 0 194 276 38 120 6.13e-19 85.1
MS.gene24612.t1 AT5G61030 44.595 74 41 0 85 158 41 114 2.02e-12 66.6
MS.gene24612.t1 AT4G39260 46.429 84 45 0 192 275 2 85 1.29e-18 79.3
MS.gene24612.t1 AT4G39260 39.189 74 45 0 85 158 7 80 4.36e-11 58.9
MS.gene24612.t1 AT5G40490 26.941 219 123 5 68 278 21 210 1.33e-18 85.5
MS.gene24612.t1 AT5G40490 34.653 101 63 1 83 183 129 226 8.53e-11 62.4
MS.gene24612.t1 AT5G19350 32.474 194 108 5 86 278 26 197 1.60e-18 85.1
MS.gene24612.t1 AT5G19350 25.000 196 132 4 82 270 114 301 2.48e-12 67.0
MS.gene24612.t1 AT5G19350 32.474 194 108 5 86 278 26 197 1.62e-18 85.1
MS.gene24612.t1 AT4G34110 28.866 194 116 4 86 279 126 297 3.31e-18 84.7
MS.gene24612.t1 AT4G34110 29.592 196 113 3 83 278 35 205 2.72e-17 82.0
MS.gene24612.t1 AT4G34110 26.087 207 139 4 75 279 206 400 8.49e-12 65.9
MS.gene24612.t1 AT1G34140 30.256 195 127 4 86 280 121 306 5.72e-18 83.6
MS.gene24612.t1 AT5G54900 30.583 206 114 7 82 279 152 336 6.44e-18 83.2
MS.gene24612.t1 AT5G54900 28.866 194 113 4 86 275 62 234 7.86e-17 80.1
MS.gene24612.t1 AT1G74230 48.101 79 40 1 194 272 32 109 1.51e-17 80.9
MS.gene24612.t1 AT1G74230 44.595 74 40 1 85 158 35 107 1.95e-11 63.5
MS.gene24612.t1 AT4G39260 45.679 81 44 0 192 272 2 82 2.30e-17 77.0
MS.gene24612.t1 AT2G33410 32.143 196 119 6 85 276 7 192 2.85e-17 81.3
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 3.96e-17 81.3
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 3.96e-17 81.3
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 3.96e-17 81.3
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 3.96e-17 81.3
MS.gene24612.t1 AT4G26650 26.804 194 124 5 85 272 16 197 4.17e-17 81.3
MS.gene24612.t1 AT4G26650 26.804 194 124 5 85 272 13 194 4.51e-17 81.3
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.18e-17 80.9
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.18e-17 80.9
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.18e-17 80.9
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.18e-17 80.9
MS.gene24612.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.18e-17 80.9
MS.gene24612.t1 AT1G49600 32.524 206 112 5 74 278 115 294 5.62e-17 80.9
MS.gene24612.t1 AT1G49600 29.557 203 128 6 82 279 211 403 5.97e-12 65.9
MS.gene24612.t1 AT1G49600 32.524 206 112 5 74 278 115 294 5.62e-17 80.9
MS.gene24612.t1 AT1G49600 29.557 203 128 6 82 279 211 403 5.97e-12 65.9
MS.gene24612.t1 AT4G39260 45.679 81 44 0 192 272 2 82 6.39e-17 77.0
MS.gene24612.t1 AT2G23350 29.897 194 111 3 86 279 48 216 6.65e-17 80.9
MS.gene24612.t1 AT2G23350 28.205 195 118 4 86 280 136 308 1.65e-15 76.6
MS.gene24612.t1 AT2G23350 30.000 200 118 5 86 279 227 410 5.90e-13 69.3
MS.gene24612.t1 AT1G47500 31.122 196 114 4 83 275 102 279 1.05e-16 79.0
MS.gene24612.t1 AT1G11650 29.843 191 114 3 86 275 64 235 1.08e-16 79.0
MS.gene24612.t1 AT3G19130 32.039 206 113 5 74 278 104 283 1.44e-16 79.7
MS.gene24612.t1 AT3G19130 27.184 206 136 5 82 280 200 398 4.96e-11 63.2
MS.gene24612.t1 AT1G49600 32.524 206 112 5 74 278 115 294 1.84e-16 79.3
MS.gene24612.t1 AT1G49600 29.412 204 129 6 82 280 211 404 2.99e-12 66.6
MS.gene24612.t1 AT1G54080 32.178 202 109 5 86 270 150 340 2.33e-16 79.0
MS.gene24612.t1 AT1G54080 27.228 202 116 4 74 272 51 224 5.27e-13 68.9
MS.gene24612.t1 AT1G17640 28.358 201 107 5 85 278 67 237 2.96e-16 78.2
MS.gene24612.t1 AT1G17640 28.358 201 107 5 85 278 67 237 2.96e-16 78.2
MS.gene24612.t1 AT1G17640 28.358 201 107 5 85 278 67 237 2.96e-16 78.2
MS.gene24612.t1 AT1G11650 30.890 191 112 4 86 275 64 235 2.97e-16 78.6
MS.gene24612.t1 AT1G11650 28.774 212 127 6 72 279 147 338 5.99e-16 77.4
MS.gene24612.t1 AT1G47500 31.122 196 114 4 83 275 102 279 4.37e-16 78.2
MS.gene24612.t1 AT1G47500 28.293 205 128 5 82 280 197 388 2.63e-14 72.8
MS.gene24612.t1 AT1G47490 30.102 196 116 4 83 275 100 277 6.60e-16 76.6
MS.gene24612.t1 AT1G71770 28.856 201 117 4 86 280 148 328 9.03e-16 77.4
MS.gene24612.t1 AT1G71770 28.922 204 130 6 77 279 235 424 2.62e-14 73.2
MS.gene24612.t1 AT1G71770 28.723 188 108 4 82 269 57 218 5.14e-13 69.3
MS.gene24612.t1 AT1G71770 28.856 201 117 4 86 280 148 328 9.03e-16 77.4
MS.gene24612.t1 AT1G71770 28.922 204 130 6 77 279 235 424 2.62e-14 73.2
MS.gene24612.t1 AT1G71770 28.723 188 108 4 82 269 57 218 5.14e-13 69.3
MS.gene24612.t1 AT5G40490 26.064 188 107 4 94 278 35 193 9.48e-16 77.0
MS.gene24612.t1 AT5G40490 34.653 101 63 1 83 183 112 209 6.38e-11 62.8
MS.gene24612.t1 AT5G06210 42.500 80 46 0 196 275 34 113 1.33e-15 72.8
MS.gene24612.t1 AT5G06210 37.838 74 46 0 85 158 35 108 8.01e-12 62.4
MS.gene24612.t1 AT3G26420 43.902 82 46 0 191 272 2 83 1.49e-15 74.7
MS.gene24612.t1 AT3G26420 35.714 84 54 0 79 162 2 85 3.84e-12 65.1
MS.gene24612.t1 AT1G47490 30.102 196 116 4 83 275 100 277 2.58e-15 75.9
MS.gene24612.t1 AT1G47490 27.451 204 131 6 82 280 195 386 5.19e-13 68.9
MS.gene24612.t1 AT1G18630 42.529 87 50 0 188 274 28 114 2.67e-15 72.0
MS.gene24612.t1 AT1G22760 30.457 197 111 6 86 279 138 311 3.96e-15 75.5
MS.gene24612.t1 AT1G22760 26.906 223 150 6 57 279 205 414 2.47e-13 70.5
MS.gene24612.t1 AT1G22760 27.411 197 117 4 82 278 47 217 2.29e-12 67.4
MS.gene24612.t1 AT5G47620 27.660 188 123 6 85 272 7 181 6.17e-15 74.7
MS.gene24612.t1 AT5G47620 27.660 188 123 6 85 272 7 181 6.17e-15 74.7
MS.gene24612.t1 AT5G47620 27.660 188 123 6 85 272 7 181 6.17e-15 74.7
MS.gene24612.t1 AT1G54080 31.553 206 109 6 86 270 150 344 1.43e-14 73.6
MS.gene24612.t1 AT1G54080 26.699 206 116 5 74 272 51 228 2.53e-11 63.9
MS.gene24612.t1 AT5G09880 28.218 202 126 6 73 270 154 340 1.58e-14 73.6
MS.gene24612.t1 AT3G07810 28.497 193 125 5 81 272 3 183 1.62e-14 73.6
MS.gene24612.t1 AT3G07810 29.293 198 117 6 81 272 3 183 1.93e-14 73.6
MS.gene24612.t1 AT3G13224 28.061 196 112 6 69 261 8 177 2.37e-14 71.2
MS.gene24612.t1 AT4G27000 29.016 193 113 4 86 275 82 253 2.46e-14 72.8
MS.gene24612.t1 AT4G27000 27.228 202 126 4 82 279 171 355 2.96e-13 69.7
MS.gene24612.t1 AT3G13224 27.273 209 123 6 69 274 8 190 2.75e-14 72.4
MS.gene24612.t1 AT3G13224 26.289 194 118 4 84 274 10 181 3.42e-14 72.0
MS.gene24612.t1 AT3G08000 41.975 81 47 0 197 277 42 122 4.08e-14 68.6
MS.gene24612.t1 AT3G08000 38.298 94 51 1 85 171 42 135 3.51e-12 63.2
MS.gene24612.t1 AT1G49760 26.804 194 120 4 86 279 135 306 5.04e-14 72.4
MS.gene24612.t1 AT1G49760 28.571 196 126 4 86 279 226 409 2.77e-12 67.0
MS.gene24612.t1 AT1G49760 26.804 194 120 4 86 279 135 306 5.04e-14 72.4
MS.gene24612.t1 AT1G49760 28.571 196 126 4 86 279 226 409 2.77e-12 67.0
MS.gene24612.t1 AT4G36960 29.851 201 109 6 83 278 2 175 1.09e-13 70.9
MS.gene24612.t1 AT4G36960 29.851 201 109 6 83 278 2 175 1.09e-13 70.9
MS.gene24612.t1 AT4G13860 45.946 74 40 0 196 269 3 76 2.55e-13 64.7
MS.gene24612.t1 AT4G13860 44.595 74 41 0 85 158 4 77 3.89e-11 58.9
MS.gene24612.t1 AT5G47620 26.087 207 124 6 85 272 7 203 2.64e-13 70.1
MS.gene24612.t1 AT1G17370 28.511 235 141 7 47 270 110 328 4.73e-13 68.9
MS.gene24612.t1 AT1G17370 26.866 201 118 3 74 272 42 215 1.50e-12 67.8
MS.gene24612.t1 AT3G14100 28.319 226 125 5 47 255 115 320 6.60e-13 68.6
MS.gene24612.t1 AT3G14100 28.218 202 114 4 74 272 47 220 8.33e-13 68.6
MS.gene24612.t1 AT1G17370 28.151 238 141 7 47 270 110 331 1.12e-12 68.2
MS.gene24612.t1 AT1G17370 26.866 201 118 3 74 272 42 215 1.51e-12 67.8
MS.gene24612.t1 AT4G09040 27.041 196 125 4 85 279 35 213 1.34e-12 66.2
MS.gene24612.t1 AT4G09040 26.020 196 127 3 85 279 95 273 1.48e-12 67.0
MS.gene24612.t1 AT4G39260 44.776 67 37 0 192 258 2 68 1.83e-12 62.8
MS.gene24612.t1 AT1G60650 36.709 79 50 0 195 273 11 89 2.69e-12 66.2
MS.gene24612.t1 AT1G60650 36.709 79 50 0 195 273 11 89 2.69e-12 66.2
MS.gene24612.t1 AT5G47320 41.250 80 47 0 197 276 32 111 3.99e-12 64.7
MS.gene24612.t1 AT1G48920 28.646 192 122 7 77 264 290 470 5.56e-12 66.2
MS.gene24612.t1 AT2G36660 27.717 184 108 4 86 269 26 184 1.15e-11 65.1
MS.gene24612.t1 AT3G46020 39.474 76 46 0 197 272 8 83 4.11e-11 59.3
MS.gene24612.t1 AT5G59865 40.000 85 49 1 194 278 24 106 4.32e-11 59.3
MS.gene24612.t1 AT4G16280 27.957 186 112 5 74 259 110 273 6.19e-11 63.2

Find 81 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAAAGGGTTTGAAATT+AGG 0.163448 1.2:-49079701 None:intergenic
AGGAAAAGGGTTTGAAATTA+GGG 0.296680 1.2:-49079700 None:intergenic
ACTGGAAGAAGCAGGGGATT+TGG 0.326987 1.2:+49080228 MS.gene24612:CDS
AGTGGAAGATCTAGAGGATT+TGG 0.327784 1.2:+49080992 MS.gene24612:CDS
CATGTTTACCGCGCCATCTA+AGG 0.341843 1.2:-49081062 None:intergenic
CGTAGTGAGAACTCCCGTTT+TGG 0.363398 1.2:+49080791 MS.gene24612:CDS
TTCATGTTGGTAACCTTGCT+TGG 0.366467 1.2:+49080888 MS.gene24612:CDS
TCATGTTGGTAACCTTGCTT+GGG 0.376247 1.2:+49080889 MS.gene24612:CDS
TTTGGTGAGAATCCTCGTTT+TGG 0.384959 1.2:+49080809 MS.gene24612:CDS
CATCAAAGGTATCTTCTTCC+TGG 0.389538 1.2:-49079802 None:intergenic
AATCCTCAAAATTGACGCTT+TGG 0.396059 1.2:-49081390 None:intergenic
AGAAACAGAGGAAAAGGAAA+AGG 0.398906 1.2:-49079714 None:intergenic
TGCTTGGGGTGTTGACAACT+TGG 0.399190 1.2:+49080904 MS.gene24612:CDS
TGGTGAACAAGGACAGGTTT+TGG 0.408469 1.2:+49080943 MS.gene24612:CDS
AGTGCTATTCGAACCTTAGA+TGG 0.414306 1.2:+49081049 MS.gene24612:CDS
ACGAGGATTCTCACCAAAAC+GGG 0.433272 1.2:-49080804 None:intergenic
GGGTTTGAAATTAGGGTTGA+GGG 0.444181 1.2:-49079693 None:intergenic
GTGATTTATGATAAGACTAC+TGG 0.448929 1.2:+49080210 MS.gene24612:CDS
TTGGCACTTGAGTCATTGTT+TGG 0.449309 1.2:+49080923 MS.gene24612:CDS
CCAACAAACAACCTCTGGTT+AGG 0.451368 1.2:-49079851 None:intergenic
GAAACAGAGGAAAAGGAAAA+GGG 0.452226 1.2:-49079713 None:intergenic
ACGAAGAGAAACAGAGGAAA+AGG 0.456325 1.2:-49079720 None:intergenic
CGCTTTGGTCTACTATCAGC+TGG 0.467712 1.2:-49081375 None:intergenic
CCTAACCAGAGGTTGTTTGT+TGG 0.469968 1.2:+49079851 MS.gene24612:CDS
CTATCTGAAGAACCACCTCT+TGG 0.481583 1.2:-49080854 None:intergenic
GGAGTGAAGAGAAACATTGA+GGG 0.482925 1.2:-49079661 None:intergenic
AACGAGGATTCTCACCAAAA+CGG 0.486728 1.2:-49080805 None:intergenic
CTCTGGTTAGGAGAGTAACT+AGG 0.488332 1.2:-49079839 None:intergenic
ATAAGACTACTGGAAGAAGC+AGG 0.490077 1.2:+49080220 MS.gene24612:CDS
ATTGTTTGGTGAACAAGGAC+AGG 0.493154 1.2:+49080937 MS.gene24612:CDS
GGGAGTGAAGAGAAACATTG+AGG 0.496008 1.2:-49079662 None:intergenic
TAGGGTTGAGGGAAAGAGAA+GGG 0.515631 1.2:-49079682 None:intergenic
AAACGCTGGGAATGTTGAAA+TGG 0.516801 1.2:+49079922 MS.gene24612:CDS
AAGCAAAGGTAATCTATGAC+AGG 0.517595 1.2:+49080966 MS.gene24612:CDS
GTAATCTATGACAGGGAAAG+TGG 0.519710 1.2:+49080974 MS.gene24612:CDS
TTAGGGTTGAGGGAAAGAGA+AGG 0.521062 1.2:-49079683 None:intergenic
GCGGCTGCTCAGCAGTTGAA+TGG 0.528626 1.2:+49080285 MS.gene24612:CDS
GAAGAAGATACCTTTGATGA+TGG 0.530298 1.2:+49079806 MS.gene24612:CDS
TCTGAAGAACCACCTCTTGG+AGG 0.535648 1.2:-49080851 None:intergenic
GGTTACCAACAAACAACCTC+TGG 0.538562 1.2:-49079856 None:intergenic
TACTATCAGCTGGTGAGACT+CGG 0.543911 1.2:-49081365 None:intergenic
TCTGGTTAGGAGAGTAACTA+GGG 0.549336 1.2:-49079838 None:intergenic
CGATGGGAAATAGACAAAGA+TGG 0.554421 1.2:-49079743 None:intergenic
CACTGTCAACACTGAAAGGA+AGG 0.558406 1.2:-49079877 None:intergenic
GAAGAGTGATGGAAGTACTA+AGG 0.558474 1.2:-49079627 None:intergenic
TGTTTCTTCTGAATTTGACC+AGG 0.566886 1.2:+49079784 MS.gene24612:CDS
AGGGTTTGAAATTAGGGTTG+AGG 0.569323 1.2:-49079694 None:intergenic
GGAAATTTACAGGTGGTGGA+TGG 0.571010 1.2:+49080728 MS.gene24612:intron
GAGTCATTGTTTGGTGAACA+AGG 0.574217 1.2:+49080932 MS.gene24612:CDS
GACTTTCAGTAGCGCTGATG+AGG 0.578722 1.2:+49081021 MS.gene24612:CDS
AGAGAATTGAGAGTGAATGC+TGG 0.579689 1.2:+49080752 MS.gene24612:CDS
TTTGGTGGTGATCGTTCTAG+AGG 0.580010 1.2:+49080827 MS.gene24612:CDS
TGAGCACTGTCAACACTGAA+AGG 0.583654 1.2:-49079881 None:intergenic
AGGGAAAGTGGAAGATCTAG+AGG 0.591000 1.2:+49080986 MS.gene24612:CDS
GGTATCATCACCATCATCAA+AGG 0.592983 1.2:-49079816 None:intergenic
TGTTACTATGTCTTCTGCTG+CGG 0.604372 1.2:+49080254 MS.gene24612:CDS
GGATGTTGCAGAGGAAGACA+TGG 0.611160 1.2:-49079606 None:intergenic
TAAGACTACTGGAAGAAGCA+GGG 0.613089 1.2:+49080221 MS.gene24612:CDS
CAACACGAGAAATGAAACGA+TGG 0.613411 1.2:-49079760 None:intergenic
AACACGAGAAATGAAACGAT+GGG 0.615472 1.2:-49079759 None:intergenic
TGGGAATGTTGAAATGGTTG+AGG 0.621531 1.2:+49079928 MS.gene24612:CDS
TTCTGCTGCGGAAGTTGAAG+CGG 0.622597 1.2:+49080266 MS.gene24612:CDS
AGTTGTCAACACCCCAAGCA+AGG 0.628607 1.2:-49080901 None:intergenic
CATGTTGGTAACCTTGCTTG+GGG 0.635880 1.2:+49080890 MS.gene24612:CDS
AACGGGAGTTCTCACTACGA+GGG 0.636934 1.2:-49080787 None:intergenic
AGCAAAGGTAATCTATGACA+GGG 0.637693 1.2:+49080967 MS.gene24612:CDS
AAGACTACTGGAAGAAGCAG+GGG 0.638733 1.2:+49080222 MS.gene24612:CDS
AAGTACTAAGGATGTTGCAG+AGG 0.643340 1.2:-49079615 None:intergenic
TCTAGAGGTCCTCCAAGAGG+TGG 0.648673 1.2:+49080842 MS.gene24612:CDS
AGATGGACGAAGAGAAACAG+AGG 0.649696 1.2:-49079726 None:intergenic
ACGGGAGTTCTCACTACGAG+GGG 0.652442 1.2:-49080786 None:intergenic
CAAGGTTACCAACATGAACA+CGG 0.652532 1.2:-49080883 None:intergenic
GAGTGAAGAGAAACATTGAG+GGG 0.655321 1.2:-49079660 None:intergenic
AGTGACAACCGTGTTCATGT+TGG 0.658546 1.2:+49080875 MS.gene24612:CDS
AAACGGGAGTTCTCACTACG+AGG 0.662477 1.2:-49080788 None:intergenic
CGTTCTAGAGGTCCTCCAAG+AGG 0.680337 1.2:+49080839 MS.gene24612:CDS
TATTCGAACCTTAGATGGCG+CGG 0.688538 1.2:+49081054 MS.gene24612:CDS
CTAGTTACTCTCCTAACCAG+AGG 0.690578 1.2:+49079840 MS.gene24612:CDS
CGGGAGTTCTCACTACGAGG+GGG 0.698174 1.2:-49080785 None:intergenic
GAACGATCACCACCAAAACG+AGG 0.713335 1.2:-49080821 None:intergenic
CTGGTTAGGAGAGTAACTAG+GGG 0.742322 1.2:-49079837 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTCATAATTAAAAAAATT+AGG - chr1.2:49081186-49081205 None:intergenic 10.0%
!! TGATAATTTATTATAAAGTT+TGG + chr1.2:49080022-49080041 MS.gene24612:intron 10.0%
!!! ATATGTATTTTATTAAAATG+TGG + chr1.2:49080565-49080584 MS.gene24612:intron 10.0%
!!! CTAATTTTTTTAATTATGAA+AGG + chr1.2:49081184-49081203 MS.gene24612:intron 10.0%
!! TTTAATAGTTACAAGTAATT+AGG + chr1.2:49080527-49080546 MS.gene24612:intron 15.0%
!!! ATTTTATTAAAATGTGGATA+AGG + chr1.2:49080571-49080590 MS.gene24612:intron 15.0%
!!! GTGAATTTAATGTTAAATTT+TGG + chr1.2:49080170-49080189 MS.gene24612:intron 15.0%
!!! TTTTATTAAAATGTGGATAA+GGG + chr1.2:49080572-49080591 MS.gene24612:intron 15.0%
!! CTTAGATGTTATAAACAAAA+TGG - chr1.2:49080697-49080716 None:intergenic 20.0%
!! TATATTATGTATTTAACCAC+TGG + chr1.2:49081292-49081311 MS.gene24612:intron 20.0%
!!! AAACAATTTTGGAAATTTAC+AGG + chr1.2:49080718-49080737 MS.gene24612:intron 20.0%
!!! CATTTTGTTTATAACATCTA+AGG + chr1.2:49080695-49080714 MS.gene24612:intron 20.0%
!!! GATTAGTTTATTACAAAGTT+TGG + chr1.2:49080095-49080114 MS.gene24612:intron 20.0%
!!! TTATAAAGTTTGGCATTTTA+TGG + chr1.2:49080032-49080051 MS.gene24612:intron 20.0%
! AGATTATGAGTTAGAATTCA+GGG + chr1.2:49081158-49081177 MS.gene24612:intron 25.0%
! AGTTGTTTGAAAATTGAGTA+TGG + chr1.2:49080376-49080395 MS.gene24612:intron 25.0%
! TAAAATACATATACCCCTAT+AGG - chr1.2:49080557-49080576 None:intergenic 25.0%
! TAGATTATGAGTTAGAATTC+AGG + chr1.2:49081157-49081176 MS.gene24612:intron 25.0%
! TGAAAATTGAGTATGGTAAT+TGG + chr1.2:49080383-49080402 MS.gene24612:intron 25.0%
!! AACATCTAAGGAAACAATTT+TGG + chr1.2:49080707-49080726 MS.gene24612:intron 25.0%
!! ACCTTTTGGATGAAAAATAA+TGG + chr1.2:49080140-49080159 MS.gene24612:intron 25.0%
!! CCAATAATTTTCATCCAAAA+GGG - chr1.2:49079997-49080016 None:intergenic 25.0%
!! CCTTTTGGATGAAAAATAAT+GGG + chr1.2:49080141-49080160 MS.gene24612:intron 25.0%
!! CCTTTTGGATGAAAATTATT+GGG + chr1.2:49079995-49080014 MS.gene24612:intron 25.0%
!! TGTTTAATTAGATACCCTTT+TGG + chr1.2:49079980-49079999 MS.gene24612:intron 25.0%
!! TTGGCATTTTATGGTTTAAT+TGG + chr1.2:49080041-49080060 MS.gene24612:intron 25.0%
!! TTGTTTAATTGAGTACCTTT+TGG + chr1.2:49080126-49080145 MS.gene24612:intron 25.0%
!!! ATCATCTGGTTTTTTTTTGT+AGG + chr1.2:49081323-49081342 MS.gene24612:intron 25.0%
!!! TTTGGAATTTGTGTTTTTTC+AGG + chr1.2:49080188-49080207 MS.gene24612:intron 25.0%
!!! TTTTTTTTGTAGGACTTGAA+TGG + chr1.2:49081333-49081352 MS.gene24612:intron 25.0%
AAGTAATTAGGTACTCCTAT+AGG + chr1.2:49080539-49080558 MS.gene24612:intron 30.0%
ACCTATGTTACAAATGACTT+TGG + chr1.2:49080671-49080690 MS.gene24612:intron 30.0%
AGTAATTAGGTACTCCTATA+GGG + chr1.2:49080540-49080559 MS.gene24612:intron 30.0%
GTAACTCTTATATCTGAGTT+TGG + chr1.2:49080632-49080651 MS.gene24612:intron 30.0%
GTGATTTATGATAAGACTAC+TGG + chr1.2:49080210-49080229 MS.gene24612:CDS 30.0%
! AAGGAAAAGGGTTTGAAATT+AGG - chr1.2:49079704-49079723 None:intergenic 30.0%
! AGGAAAAGGGTTTGAAATTA+GGG - chr1.2:49079703-49079722 None:intergenic 30.0%
! CCCAATAATTTTCATCCAAA+AGG - chr1.2:49079998-49080017 None:intergenic 30.0%
! CCCTTTTGGATGAAAATTAT+TGG + chr1.2:49079994-49080013 MS.gene24612:intron 30.0%
!! CAATTTTGGAAATTTACAGG+TGG + chr1.2:49080721-49080740 MS.gene24612:intron 30.0%
!! CCCATTATTTTTCATCCAAA+AGG - chr1.2:49080144-49080163 None:intergenic 30.0%
!! GATGAAAAATAATGGGTTTG+TGG + chr1.2:49080148-49080167 MS.gene24612:intron 30.0%
AACACGAGAAATGAAACGAT+GGG - chr1.2:49079762-49079781 None:intergenic 35.0%
AAGCAAAGGTAATCTATGAC+AGG + chr1.2:49080966-49080985 MS.gene24612:CDS 35.0%
ACAATGAGTAGATCTGGATA+AGG - chr1.2:49080614-49080633 None:intergenic 35.0%
ACCTGCATCATATTGAATAG+AGG - chr1.2:49081097-49081116 None:intergenic 35.0%
AGAAACAGAGGAAAAGGAAA+AGG - chr1.2:49079717-49079736 None:intergenic 35.0%
AGAGTTACAATGAGTAGATC+TGG - chr1.2:49080620-49080639 None:intergenic 35.0%
AGCAAAGGTAATCTATGACA+GGG + chr1.2:49080967-49080986 MS.gene24612:CDS 35.0%
GAAACAGAGGAAAAGGAAAA+GGG - chr1.2:49079716-49079735 None:intergenic 35.0%
GAAGAAGATACCTTTGATGA+TGG + chr1.2:49079806-49079825 MS.gene24612:CDS 35.0%
GCATCATATTGAATAGAGGA+GGG - chr1.2:49081093-49081112 None:intergenic 35.0%
GCCAAAGTCATTTGTAACAT+AGG - chr1.2:49080675-49080694 None:intergenic 35.0%
GTAATTAGGTACTCCTATAG+GGG + chr1.2:49080541-49080560 MS.gene24612:intron 35.0%
TCAACTCTTCATGTGTGAAT+TGG + chr1.2:49081256-49081275 MS.gene24612:intron 35.0%
TCCTCTATTCAATATGATGC+AGG + chr1.2:49081093-49081112 MS.gene24612:intron 35.0%
TGCATCATATTGAATAGAGG+AGG - chr1.2:49081094-49081113 None:intergenic 35.0%
TGTGAGCAAATTGTGTACTA+TGG - chr1.2:49080477-49080496 None:intergenic 35.0%
TGTTTCTTCTGAATTTGACC+AGG + chr1.2:49079784-49079803 MS.gene24612:CDS 35.0%
! GGTTTAATTGGATACCCTTT+TGG + chr1.2:49080053-49080072 MS.gene24612:intron 35.0%
! TGTGGATAAGGGTATAACTA+TGG + chr1.2:49080583-49080602 MS.gene24612:intron 35.0%
!! CTGAGATTTTTGAAAACGCT+GGG + chr1.2:49079909-49079928 MS.gene24612:CDS 35.0%
!! TTTTGGAAATTTACAGGTGG+TGG + chr1.2:49080724-49080743 MS.gene24612:intron 35.0%
AAACGCTGGGAATGTTGAAA+TGG + chr1.2:49079922-49079941 MS.gene24612:CDS 40.0%
AACGAGGATTCTCACCAAAA+CGG - chr1.2:49080808-49080827 None:intergenic 40.0%
AAGTACTAAGGATGTTGCAG+AGG - chr1.2:49079618-49079637 None:intergenic 40.0%
ACGAAGAGAAACAGAGGAAA+AGG - chr1.2:49079723-49079742 None:intergenic 40.0%
AGAGAATTGAGAGTGAATGC+TGG + chr1.2:49080752-49080771 MS.gene24612:CDS 40.0%
AGTGGAAGATCTAGAGGATT+TGG + chr1.2:49080992-49081011 MS.gene24612:CDS 40.0%
ATAAGACTACTGGAAGAAGC+AGG + chr1.2:49080220-49080239 MS.gene24612:CDS 40.0%
CAACACGAGAAATGAAACGA+TGG - chr1.2:49079763-49079782 None:intergenic 40.0%
CAAGGTTACCAACATGAACA+CGG - chr1.2:49080886-49080905 None:intergenic 40.0%
CGATGGGAAATAGACAAAGA+TGG - chr1.2:49079746-49079765 None:intergenic 40.0%
GACGCAAAACTACAACTCAA+TGG - chr1.2:49081235-49081254 None:intergenic 40.0%
GAGTGAAGAGAAACATTGAG+GGG - chr1.2:49079663-49079682 None:intergenic 40.0%
GGAGTGAAGAGAAACATTGA+GGG - chr1.2:49079664-49079683 None:intergenic 40.0%
GGTATCATCACCATCATCAA+AGG - chr1.2:49079819-49079838 None:intergenic 40.0%
GTAATCTATGACAGGGAAAG+TGG + chr1.2:49080974-49080993 MS.gene24612:CDS 40.0%
TAAGACTACTGGAAGAAGCA+GGG + chr1.2:49080221-49080240 MS.gene24612:CDS 40.0%
TATGAAAGGGTTAAGTCCCT+TGG + chr1.2:49081198-49081217 MS.gene24612:intron 40.0%
TCTGGTTAGGAGAGTAACTA+GGG - chr1.2:49079841-49079860 None:intergenic 40.0%
TGGGAATGTTGAAATGGTTG+AGG + chr1.2:49079928-49079947 MS.gene24612:CDS 40.0%
TGTTACTATGTCTTCTGCTG+CGG + chr1.2:49080254-49080273 MS.gene24612:CDS 40.0%
TTGGCACTTGAGTCATTGTT+TGG + chr1.2:49080923-49080942 MS.gene24612:CDS 40.0%
! AGGGTTTGAAATTAGGGTTG+AGG - chr1.2:49079697-49079716 None:intergenic 40.0%
! AGTGCTATTCGAACCTTAGA+TGG + chr1.2:49081049-49081068 MS.gene24612:CDS 40.0%
! ATTGTTTGGTGAACAAGGAC+AGG + chr1.2:49080937-49080956 MS.gene24612:CDS 40.0%
! GAAACATTGAGGGGAGTTTT+TGG - chr1.2:49079654-49079673 None:intergenic 40.0%
! GAGTCATTGTTTGGTGAACA+AGG + chr1.2:49080932-49080951 MS.gene24612:CDS 40.0%
! GGGTTTGAAATTAGGGTTGA+GGG - chr1.2:49079696-49079715 None:intergenic 40.0%
! TTTGGTGAGAATCCTCGTTT+TGG + chr1.2:49080809-49080828 MS.gene24612:CDS 40.0%
!! AATGGCTTTGAATCCTCCAA+GGG - chr1.2:49081217-49081236 None:intergenic 40.0%
!! CATCAAAGGTATCTTCTTCC+TGG - chr1.2:49079805-49079824 None:intergenic 40.0%
!! GAAGAGTGATGGAAGTACTA+AGG - chr1.2:49079630-49079649 None:intergenic 40.0%
!! GCTGAGATTTTTGAAAACGC+TGG + chr1.2:49079908-49079927 MS.gene24612:CDS 40.0%
!! TCATGTTGGTAACCTTGCTT+GGG + chr1.2:49080889-49080908 MS.gene24612:CDS 40.0%
!! TTCATGTTGGTAACCTTGCT+TGG + chr1.2:49080888-49080907 MS.gene24612:CDS 40.0%
!!! GAGTTTTTGGTGAAGAGTGA+TGG - chr1.2:49079641-49079660 None:intergenic 40.0%
AAGACTACTGGAAGAAGCAG+GGG + chr1.2:49080222-49080241 MS.gene24612:CDS 45.0%
ACGAGGATTCTCACCAAAAC+GGG - chr1.2:49080807-49080826 None:intergenic 45.0%
AGATGGACGAAGAGAAACAG+AGG - chr1.2:49079729-49079748 None:intergenic 45.0%
AGGGAAAGTGGAAGATCTAG+AGG + chr1.2:49080986-49081005 MS.gene24612:CDS 45.0%
AGTGACAACCGTGTTCATGT+TGG + chr1.2:49080875-49080894 MS.gene24612:CDS 45.0%
CACTGTCAACACTGAAAGGA+AGG - chr1.2:49079880-49079899 None:intergenic 45.0%
CCAACAAACAACCTCTGGTT+AGG - chr1.2:49079854-49079873 None:intergenic 45.0%
CCTAACCAGAGGTTGTTTGT+TGG + chr1.2:49079851-49079870 MS.gene24612:CDS 45.0%
CTAGTTACTCTCCTAACCAG+AGG + chr1.2:49079840-49079859 MS.gene24612:CDS 45.0%
CTATCTGAAGAACCACCTCT+TGG - chr1.2:49080857-49080876 None:intergenic 45.0%
CTCTGGTTAGGAGAGTAACT+AGG - chr1.2:49079842-49079861 None:intergenic 45.0%
CTGGTTAGGAGAGTAACTAG+GGG - chr1.2:49079840-49079859 None:intergenic 45.0%
GGGAGTGAAGAGAAACATTG+AGG - chr1.2:49079665-49079684 None:intergenic 45.0%
GGTTACCAACAAACAACCTC+TGG - chr1.2:49079859-49079878 None:intergenic 45.0%
TACTATCAGCTGGTGAGACT+CGG - chr1.2:49081368-49081387 None:intergenic 45.0%
TAGGGTTGAGGGAAAGAGAA+GGG - chr1.2:49079685-49079704 None:intergenic 45.0%
TATTCGAACCTTAGATGGCG+CGG + chr1.2:49081054-49081073 MS.gene24612:CDS 45.0%
TTAGGGTTGAGGGAAAGAGA+AGG - chr1.2:49079686-49079705 None:intergenic 45.0%
! TGAGCACTGTCAACACTGAA+AGG - chr1.2:49079884-49079903 None:intergenic 45.0%
! TGGTGAACAAGGACAGGTTT+TGG + chr1.2:49080943-49080962 MS.gene24612:CDS 45.0%
!! CAATGGCTTTGAATCCTCCA+AGG - chr1.2:49081218-49081237 None:intergenic 45.0%
!! CATGTTGGTAACCTTGCTTG+GGG + chr1.2:49080890-49080909 MS.gene24612:CDS 45.0%
!! GGAAATTTACAGGTGGTGGA+TGG + chr1.2:49080728-49080747 MS.gene24612:intron 45.0%
!! TTTGGTGGTGATCGTTCTAG+AGG + chr1.2:49080827-49080846 MS.gene24612:CDS 45.0%
!!! AGGACAGGTTTTGGAAGCAA+AGG + chr1.2:49080952-49080971 MS.gene24612:CDS 45.0%
!! TTTCATAATTAAAAAAATTA+GGG - chr1.2:49081185-49081204 None:intergenic 5.0%
!!! TAATTTTTTTAATTATGAAA+GGG + chr1.2:49081185-49081204 MS.gene24612:intron 5.0%
AAACGGGAGTTCTCACTACG+AGG - chr1.2:49080791-49080810 None:intergenic 50.0%
AACGGGAGTTCTCACTACGA+GGG - chr1.2:49080790-49080809 None:intergenic 50.0%
ACTGGAAGAAGCAGGGGATT+TGG + chr1.2:49080228-49080247 MS.gene24612:CDS 50.0%
AGTTGTCAACACCCCAAGCA+AGG - chr1.2:49080904-49080923 None:intergenic 50.0%
CACTGGAGTCTTGCATCATC+TGG + chr1.2:49081309-49081328 MS.gene24612:intron 50.0%
CAGATGATGCAAGACTCCAG+TGG - chr1.2:49081311-49081330 None:intergenic 50.0%
CATGTTTACCGCGCCATCTA+AGG - chr1.2:49081065-49081084 None:intergenic 50.0%
CGCTTTGGTCTACTATCAGC+TGG - chr1.2:49081378-49081397 None:intergenic 50.0%
GAAAGGGTTAAGTCCCTTGG+AGG + chr1.2:49081201-49081220 MS.gene24612:intron 50.0%
GAACGATCACCACCAAAACG+AGG - chr1.2:49080824-49080843 None:intergenic 50.0%
TCTGAAGAACCACCTCTTGG+AGG - chr1.2:49080854-49080873 None:intergenic 50.0%
TTCTGCTGCGGAAGTTGAAG+CGG + chr1.2:49080266-49080285 MS.gene24612:CDS 50.0%
! CGTAGTGAGAACTCCCGTTT+TGG + chr1.2:49080791-49080810 MS.gene24612:CDS 50.0%
! GGTGAGAATCCTCGTTTTGG+TGG + chr1.2:49080812-49080831 MS.gene24612:CDS 50.0%
!! GACTTTCAGTAGCGCTGATG+AGG + chr1.2:49081021-49081040 MS.gene24612:CDS 50.0%
!! TGCTTGGGGTGTTGACAACT+TGG + chr1.2:49080904-49080923 MS.gene24612:CDS 50.0%
ACGGGAGTTCTCACTACGAG+GGG - chr1.2:49080789-49080808 None:intergenic 55.0%
TCTAGAGGTCCTCCAAGAGG+TGG + chr1.2:49080842-49080861 MS.gene24612:CDS 55.0%
!! CGTTCTAGAGGTCCTCCAAG+AGG + chr1.2:49080839-49080858 MS.gene24612:CDS 55.0%
CGGGAGTTCTCACTACGAGG+GGG - chr1.2:49080788-49080807 None:intergenic 60.0%
GAGTTCTCACTACGAGGGGG+AGG - chr1.2:49080785-49080804 None:intergenic 60.0%
GCGGCTGCTCAGCAGTTGAA+TGG + chr1.2:49080285-49080304 MS.gene24612:CDS 60.0%
TTCTCACTACGAGGGGGAGG+TGG - chr1.2:49080782-49080801 None:intergenic 60.0%
TCACTACGAGGGGGAGGTGG+TGG - chr1.2:49080779-49080798 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 49079608 49081407 49079608 ID=MS.gene24612
chr1.2 mRNA 49079608 49081407 49079608 ID=MS.gene24612.t1;Parent=MS.gene24612
chr1.2 exon 49079608 49079949 49079608 ID=MS.gene24612.t1.exon1;Parent=MS.gene24612.t1
chr1.2 CDS 49079608 49079949 49079608 ID=cds.MS.gene24612.t1;Parent=MS.gene24612.t1
chr1.2 exon 49080210 49080311 49080210 ID=MS.gene24612.t1.exon2;Parent=MS.gene24612.t1
chr1.2 CDS 49080210 49080311 49080210 ID=cds.MS.gene24612.t1;Parent=MS.gene24612.t1
chr1.2 exon 49080740 49081075 49080740 ID=MS.gene24612.t1.exon3;Parent=MS.gene24612.t1
chr1.2 CDS 49080740 49081075 49080740 ID=cds.MS.gene24612.t1;Parent=MS.gene24612.t1
chr1.2 exon 49081345 49081407 49081345 ID=MS.gene24612.t1.exon4;Parent=MS.gene24612.t1
chr1.2 CDS 49081345 49081407 49081345 ID=cds.MS.gene24612.t1;Parent=MS.gene24612.t1
Gene Sequence

>MS.gene24612

ATGTCTTCCTCTGCAACATCCTTAGTACTTCCATCACTCTTCACCAAAAACTCCCCTCAATGTTTCTCTTCACTCCCTTCTCTTTCCCTCAACCCTAATTTCAAACCCTTTTCCTTTTCCTCTGTTTCTCTTCGTCCATCTTTGTCTATTTCCCATCGTTTCATTTCTCGTGTTGCTGTTTCTTCTGAATTTGACCAGGAAGAAGATACCTTTGATGATGGTGATGATACCCCTAGTTACTCTCCTAACCAGAGGTTGTTTGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAAAACGCTGGGAATGTTGAAATGGTTGAGGTAATTTCTTACAAAGTTTTGTTTTTTTATTGTTTAATTAGATACCCTTTTGGATGAAAATTATTGGGTTTGTGATAATTTATTATAAAGTTTGGCATTTTATGGTTTAATTGGATACCCTTTTGGATGAAAATTATTGGGTTAAGATTAGTTTATTACAAAGTTTGGTTATTTTTTTGTTTAATTGAGTACCTTTTGGATGAAAAATAATGGGTTTGTGGTGAATTTAATGTTAAATTTTGGAATTTGTGTTTTTTCAGGTGATTTATGATAAGACTACTGGAAGAAGCAGGGGATTTGGTTTTGTTACTATGTCTTCTGCTGCGGAAGTTGAAGCGGCTGCTCAGCAGTTGAATGGCTATGTGAGTTTATTTTTCATCATTTGTTTGATAATTATTCAGATGTTTTGTTCTGAGAATTTTTGTTAGTTGTTTGAAAATTGAGTATGGTAATTGGTGTGTGTGTGTGTGTGTGTGTATAAGTAATTAAATTCAATGTTATTCTGTATGAATGTGACTGCAGTGCCATAGTACACAATTTGCTCACACAAACATGTTTTAATTGTGTATTGATGAATTTTAATAGTTACAAGTAATTAGGTACTCCTATAGGGGTATATGTATTTTATTAAAATGTGGATAAGGGTATAACTATGGTAGTACCTTATCCAGATCTACTCATTGTAACTCTTATATCTGAGTTTGGATGATATTAATTTTTTACCTATGTTACAAATGACTTTGGCCATTTTGTTTATAACATCTAAGGAAACAATTTTGGAAATTTACAGGTGGTGGATGGAAGAGAATTGAGAGTGAATGCTGGACCACCACCTCCCCCTCGTAGTGAGAACTCCCGTTTTGGTGAGAATCCTCGTTTTGGTGGTGATCGTTCTAGAGGTCCTCCAAGAGGTGGTTCTTCAGATAGTGACAACCGTGTTCATGTTGGTAACCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTGGTGAACAAGGACAGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGATTTGGCTTTGTGACTTTCAGTAGCGCTGATGAGGTCAACAGTGCTATTCGAACCTTAGATGGCGCGGTAAACATGCAAATCCCTCCTCTATTCAATATGATGCAGGTCTTTTTAATTTCATAATTCAAATTAGATTTATGTTACTTTTAGATTATGAGTTAGAATTCAGGGACCCTAATTTTTTTAATTATGAAAGGGTTAAGTCCCTTGGAGGATTCAAAGCCATTGAGTTGTAGTTTTGCGTCTTCAACTCTTCATGTGTGAATTGGTGTTGTGTAAAGCTATATTATGTATTTAACCACTGGAGTCTTGCATCATCTGGTTTTTTTTTGTAGGACTTGAATGGCAGAGCTATCCGAGTCTCACCAGCTGATAGTAGACCAAAGCGTCAATTTTGA
Protein sequence

>MS.gene24612.t1

MSSSATSLVLPSLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGNVEMVEVIYDKTTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRSRGPPRGGSSDSDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVNSAIRTLDGADLNGRAIRVSPADSRPKRQF