Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25036.t1 | XP_003627464.1 | 92.5 | 241 | 17 | 1 | 1 | 240 | 1 | 241 | 1.40E-121 | 445.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25036.t1 | Q9SHI7 | 77.5 | 240 | 51 | 1 | 1 | 240 | 1 | 237 | 1.1e-95 | 350.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25036.t1 | B7FML7 | 92.5 | 241 | 17 | 1 | 1 | 240 | 1 | 241 | 1.0e-121 | 445.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene028080 | MS.gene25036 | PPI |
MS.gene052128 | MS.gene25036 | PPI |
MS.gene028078 | MS.gene25036 | PPI |
MS.gene30950 | MS.gene25036 | PPI |
MS.gene25036 | MS.gene72831 | PPI |
MS.gene25036 | MS.gene070084 | PPI |
MS.gene84986 | MS.gene25036 | PPI |
MS.gene31164 | MS.gene25036 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25036.t1 | MTR_8g023380 | 96.680 | 241 | 7 | 1 | 1 | 240 | 1 | 241 | 2.54e-177 | 486 |
MS.gene25036.t1 | MTR_4g121960 | 34.637 | 179 | 112 | 3 | 6 | 182 | 11 | 186 | 9.76e-34 | 123 |
MS.gene25036.t1 | MTR_8g071040 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 5.65e-17 | 75.5 |
MS.gene25036.t1 | MTR_1g021150 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 7.20e-16 | 72.8 |
MS.gene25036.t1 | MTR_3g062450 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 1.05e-15 | 72.0 |
MS.gene25036.t1 | MTR_8g468530 | 31.092 | 119 | 73 | 3 | 8 | 122 | 23 | 136 | 1.08e-15 | 72.8 |
MS.gene25036.t1 | MTR_5g075580 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 1.10e-15 | 72.0 |
MS.gene25036.t1 | MTR_4g108080 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.80e-15 | 71.6 |
MS.gene25036.t1 | MTR_7g116940 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 2.03e-15 | 71.2 |
MS.gene25036.t1 | MTR_4g073240 | 31.624 | 117 | 71 | 3 | 8 | 120 | 4 | 115 | 2.55e-15 | 71.2 |
MS.gene25036.t1 | MTR_7g116940 | 33.333 | 111 | 65 | 3 | 8 | 114 | 4 | 109 | 1.44e-13 | 65.9 |
MS.gene25036.t1 | MTR_4g108080 | 31.481 | 108 | 65 | 3 | 8 | 111 | 7 | 109 | 4.30e-13 | 64.3 |
MS.gene25036.t1 | MTR_7g116940 | 30.973 | 113 | 69 | 3 | 8 | 116 | 4 | 111 | 5.31e-13 | 65.1 |
MS.gene25036.t1 | MTR_8g085690 | 28.571 | 126 | 73 | 3 | 8 | 125 | 25 | 141 | 8.59e-13 | 64.7 |
MS.gene25036.t1 | MTR_3g110110 | 29.600 | 125 | 78 | 4 | 4 | 122 | 2 | 122 | 9.33e-12 | 61.6 |
MS.gene25036.t1 | MTR_1g021150 | 33.673 | 98 | 56 | 3 | 27 | 120 | 31 | 123 | 1.58e-11 | 61.2 |
MS.gene25036.t1 | MTR_5g009020 | 33.621 | 116 | 68 | 3 | 4 | 115 | 31 | 141 | 3.22e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25036.t1 | AT1G17280 | 77.500 | 240 | 51 | 2 | 1 | 240 | 1 | 237 | 4.20e-139 | 390 |
MS.gene25036.t1 | AT1G17280 | 77.500 | 240 | 51 | 2 | 1 | 240 | 1 | 237 | 4.20e-139 | 390 |
MS.gene25036.t1 | AT1G17280 | 77.500 | 240 | 51 | 2 | 1 | 240 | 1 | 237 | 4.20e-139 | 390 |
MS.gene25036.t1 | AT1G17280 | 77.500 | 240 | 51 | 2 | 1 | 240 | 1 | 237 | 4.20e-139 | 390 |
MS.gene25036.t1 | AT1G17280 | 77.500 | 240 | 51 | 2 | 1 | 240 | 1 | 237 | 4.20e-139 | 390 |
MS.gene25036.t1 | AT1G17280 | 77.500 | 240 | 51 | 2 | 1 | 240 | 1 | 237 | 4.20e-139 | 390 |
MS.gene25036.t1 | AT1G17280 | 77.500 | 240 | 51 | 2 | 1 | 240 | 1 | 237 | 4.20e-139 | 390 |
MS.gene25036.t1 | AT1G17280 | 77.500 | 240 | 51 | 2 | 1 | 240 | 1 | 237 | 4.20e-139 | 390 |
MS.gene25036.t1 | AT1G17280 | 75.610 | 246 | 51 | 3 | 1 | 240 | 1 | 243 | 1.55e-136 | 384 |
MS.gene25036.t1 | AT5G50430 | 74.180 | 244 | 58 | 2 | 1 | 240 | 1 | 243 | 1.85e-136 | 383 |
MS.gene25036.t1 | AT5G50430 | 74.180 | 244 | 58 | 2 | 1 | 240 | 1 | 243 | 1.85e-136 | 383 |
MS.gene25036.t1 | AT5G50430 | 68.852 | 244 | 58 | 3 | 1 | 240 | 1 | 230 | 1.32e-121 | 345 |
MS.gene25036.t1 | AT3G17000 | 41.912 | 136 | 76 | 2 | 6 | 139 | 12 | 146 | 1.23e-33 | 123 |
MS.gene25036.t1 | AT5G56150 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 5.56e-17 | 75.5 |
MS.gene25036.t1 | AT3G08690 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 3.69e-16 | 73.6 |
MS.gene25036.t1 | AT3G08690 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 3.69e-16 | 73.6 |
MS.gene25036.t1 | AT4G27960 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 6.07e-16 | 72.8 |
MS.gene25036.t1 | AT1G64230 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 6.80e-16 | 72.8 |
MS.gene25036.t1 | AT1G64230 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 6.80e-16 | 72.8 |
MS.gene25036.t1 | AT2G02760 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 9.64e-16 | 72.4 |
MS.gene25036.t1 | AT2G02760 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 9.64e-16 | 72.4 |
MS.gene25036.t1 | AT2G02760 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 9.64e-16 | 72.4 |
MS.gene25036.t1 | AT2G02760 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 9.64e-16 | 72.4 |
MS.gene25036.t1 | AT5G41700 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 1.02e-15 | 72.4 |
MS.gene25036.t1 | AT5G41700 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 1.02e-15 | 72.4 |
MS.gene25036.t1 | AT5G41700 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 1.02e-15 | 72.4 |
MS.gene25036.t1 | AT1G14400 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.14e-15 | 72.4 |
MS.gene25036.t1 | AT1G14400 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.14e-15 | 72.4 |
MS.gene25036.t1 | AT4G27960 | 33.333 | 117 | 69 | 3 | 8 | 120 | 34 | 145 | 1.66e-15 | 72.4 |
MS.gene25036.t1 | AT5G41700 | 34.746 | 118 | 67 | 4 | 8 | 120 | 4 | 116 | 2.06e-15 | 71.6 |
MS.gene25036.t1 | AT5G53300 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 2.17e-15 | 71.2 |
MS.gene25036.t1 | AT5G53300 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 2.17e-15 | 71.2 |
MS.gene25036.t1 | AT5G53300 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 2.17e-15 | 71.2 |
MS.gene25036.t1 | AT5G62540 | 31.061 | 132 | 78 | 4 | 8 | 135 | 7 | 129 | 1.21e-14 | 69.3 |
MS.gene25036.t1 | AT5G56150 | 33.929 | 112 | 64 | 4 | 8 | 115 | 4 | 109 | 1.78e-14 | 67.8 |
MS.gene25036.t1 | AT2G16740 | 30.769 | 117 | 72 | 3 | 8 | 120 | 4 | 115 | 3.11e-14 | 68.2 |
MS.gene25036.t1 | AT1G64230 | 30.000 | 120 | 71 | 4 | 5 | 120 | 47 | 157 | 1.43e-13 | 67.4 |
MS.gene25036.t1 | AT1G64230 | 30.000 | 120 | 71 | 4 | 5 | 120 | 47 | 157 | 1.43e-13 | 67.4 |
MS.gene25036.t1 | AT5G41700 | 33.654 | 104 | 60 | 3 | 8 | 107 | 4 | 102 | 3.39e-13 | 65.5 |
MS.gene25036.t1 | AT1G64230 | 30.952 | 126 | 69 | 4 | 8 | 120 | 4 | 124 | 4.31e-13 | 65.5 |
MS.gene25036.t1 | AT3G08700 | 31.356 | 118 | 71 | 4 | 8 | 120 | 4 | 116 | 5.85e-13 | 64.7 |
MS.gene25036.t1 | AT3G08700 | 31.356 | 118 | 71 | 4 | 8 | 120 | 4 | 116 | 5.85e-13 | 64.7 |
MS.gene25036.t1 | AT5G53300 | 32.692 | 104 | 61 | 3 | 8 | 107 | 4 | 102 | 1.93e-12 | 62.4 |
MS.gene25036.t1 | AT1G36340 | 30.841 | 107 | 68 | 3 | 3 | 107 | 6 | 108 | 2.70e-12 | 63.2 |
MS.gene25036.t1 | AT1G36340 | 30.841 | 107 | 68 | 3 | 3 | 107 | 6 | 108 | 2.70e-12 | 63.2 |
MS.gene25036.t1 | AT5G25760 | 28.800 | 125 | 79 | 4 | 4 | 122 | 2 | 122 | 2.74e-11 | 60.5 |
MS.gene25036.t1 | AT5G25760 | 28.800 | 125 | 79 | 4 | 4 | 122 | 2 | 122 | 2.74e-11 | 60.5 |
MS.gene25036.t1 | AT3G13550 | 28.319 | 113 | 80 | 1 | 8 | 120 | 39 | 150 | 8.23e-11 | 59.3 |
Find 67 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATTGGATTCCAACTTTC+AGG | 0.160053 | 8.1:+77363666 | None:intergenic |
TTATTACTCTTCTCCATCTT+TGG | 0.164344 | 8.1:-77362433 | MS.gene25036:CDS |
CTCCATCTTTGGGGTTGTTA+TGG | 0.233457 | 8.1:-77362422 | MS.gene25036:CDS |
GTGAAGGACGGGCCACAATA+TGG | 0.237187 | 8.1:+77364500 | None:intergenic |
TATTACTCTTCTCCATCTTT+GGG | 0.241159 | 8.1:-77362432 | MS.gene25036:CDS |
CTGATTCCAGGAGGTTTATA+AGG | 0.284681 | 8.1:+77363939 | None:intergenic |
TAAAAGTCCGAGGTCTGTTT+TGG | 0.291867 | 8.1:-77362554 | MS.gene25036:CDS |
TTCCTTGCAGTGCAACATTC+AGG | 0.294415 | 8.1:-77362672 | MS.gene25036:intron |
TATGAATGCAGCATACTTAC+CGG | 0.344644 | 8.1:-77363464 | MS.gene25036:intron |
TACCGGGCTTCTTTCATTCA+TGG | 0.353871 | 8.1:-77363447 | MS.gene25036:intron |
TGTAGCATGACAACACCTAA+TGG | 0.360595 | 8.1:-77363835 | MS.gene25036:intron |
CTTATAAACCTCCTGGAATC+AGG | 0.389083 | 8.1:-77363938 | MS.gene25036:intron |
CCACAGGAGAAGACTTGAAA+AGG | 0.427561 | 8.1:-77362516 | MS.gene25036:CDS |
ACAAGAAGGCACCTGATTCC+AGG | 0.429061 | 8.1:+77363927 | None:intergenic |
CGGGCCACAATATGGGAAAC+TGG | 0.431636 | 8.1:+77364508 | None:intergenic |
GTTGTACTTCTCCACGTACT+CGG | 0.441817 | 8.1:+77362639 | None:intergenic |
TGTGTCATGAACCGCCCATT+AGG | 0.446261 | 8.1:+77363820 | None:intergenic |
GAAGACTTGAAAAGGGTTGA+GGG | 0.448975 | 8.1:-77362508 | MS.gene25036:CDS |
AGCGAGGGAACACCTTTCTC+AGG | 0.450214 | 8.1:-77364134 | MS.gene25036:intron |
TTGTACTTCTCCACGTACTC+GGG | 0.458106 | 8.1:+77362640 | None:intergenic |
TTGCAGTTCATCCTGAAAGT+TGG | 0.464526 | 8.1:-77363677 | MS.gene25036:intron |
GAAAAGGGTTGAGGGATTGA+AGG | 0.471212 | 8.1:-77362500 | MS.gene25036:CDS |
GAATATCCTTATAAACCTCC+TGG | 0.476050 | 8.1:-77363945 | MS.gene25036:CDS |
GTAGCATGACAACACCTAAT+GGG | 0.487721 | 8.1:-77363834 | MS.gene25036:intron |
TGCCATAACAACCCCAAAGA+TGG | 0.488741 | 8.1:+77362420 | None:intergenic |
CAGCCAACGTCATCAGAGTC+TGG | 0.492973 | 8.1:-77362583 | MS.gene25036:CDS |
TGAAGGACGGGCCACAATAT+GGG | 0.495022 | 8.1:+77364501 | None:intergenic |
AGAAGACTTGAAAAGGGTTG+AGG | 0.497193 | 8.1:-77362509 | MS.gene25036:CDS |
TCATATCTCAGATTACGTAT+TGG | 0.507101 | 8.1:-77364162 | MS.gene25036:intron |
GGAGCCAGTTTCCCATATTG+TGG | 0.524830 | 8.1:-77364512 | MS.gene25036:CDS |
TACACTGCCAGTGGTTGGAC+TGG | 0.524839 | 8.1:+77362822 | None:intergenic |
AGTAATAACATCATCCAGGT+TGG | 0.531733 | 8.1:+77362448 | None:intergenic |
CGCCACTCAAGGATATCACT+TGG | 0.535950 | 8.1:+77364478 | None:intergenic |
GAAAACAAGGATTTCCAACC+TGG | 0.547451 | 8.1:-77362462 | MS.gene25036:CDS |
ATGCATCAAGCGCCTTCAGA+AGG | 0.549944 | 8.1:-77364970 | MS.gene25036:CDS |
GATATCACTTGGTGAAGGAC+GGG | 0.551464 | 8.1:+77364489 | None:intergenic |
ATCCAATGTGGTCTGTATCA+AGG | 0.552283 | 8.1:-77363653 | MS.gene25036:intron |
ATTACTCTTCTCCATCTTTG+GGG | 0.552481 | 8.1:-77362431 | MS.gene25036:CDS |
TAATTTGCTAAACCTGAGAA+AGG | 0.560758 | 8.1:+77364122 | None:intergenic |
GGATATCACTTGGTGAAGGA+CGG | 0.562956 | 8.1:+77364488 | None:intergenic |
GAAGAGTAATAACATCATCC+AGG | 0.567563 | 8.1:+77362444 | None:intergenic |
TACCATGAATGAAAGAAGCC+CGG | 0.570761 | 8.1:+77363445 | None:intergenic |
CACAGGAGAAGACTTGAAAA+GGG | 0.572298 | 8.1:-77362515 | MS.gene25036:CDS |
GAAAACAATGTAGAGTCCAC+AGG | 0.573857 | 8.1:-77362532 | MS.gene25036:CDS |
TTGAGGGATTGAAGGATGCG+AGG | 0.577968 | 8.1:-77362492 | MS.gene25036:CDS |
GTGCTCTATACTCCTTCTGA+AGG | 0.582054 | 8.1:+77364958 | None:intergenic |
ATGAATGCAGCATACTTACC+GGG | 0.582437 | 8.1:-77363463 | MS.gene25036:intron |
ATCTCAGATTACGTATTGGA+AGG | 0.583968 | 8.1:-77364158 | MS.gene25036:intron |
AACAAAACTTACGCCACTCA+AGG | 0.586569 | 8.1:+77364467 | None:intergenic |
AAAATTCACAGCTGGAGTAG+AGG | 0.587096 | 8.1:+77362394 | None:intergenic |
GTGTTTACACTGCCAGTGGT+TGG | 0.587196 | 8.1:+77362817 | None:intergenic |
GAAGATGTTCCCCGAGTACG+TGG | 0.599484 | 8.1:-77362650 | MS.gene25036:CDS |
TGTACTTCTCCACGTACTCG+GGG | 0.603988 | 8.1:+77362641 | None:intergenic |
ATGGATACCAGTCCAACCAC+TGG | 0.607472 | 8.1:-77362829 | MS.gene25036:CDS |
GACCTTGATACAGACCACAT+TGG | 0.612471 | 8.1:+77363651 | None:intergenic |
TACGTATTGGAAGGAAGCGA+GGG | 0.615267 | 8.1:-77364149 | MS.gene25036:CDS |
GCGAGGAGAAACAGAAAACA+AGG | 0.615922 | 8.1:-77362475 | MS.gene25036:CDS |
TTACGTATTGGAAGGAAGCG+AGG | 0.625291 | 8.1:-77364150 | MS.gene25036:CDS |
AGTAGTGTTTACACTGCCAG+TGG | 0.639725 | 8.1:+77362813 | None:intergenic |
CACCAAGTGATATCCTTGAG+TGG | 0.661819 | 8.1:-77364480 | MS.gene25036:CDS |
TCAAGGATATCACTTGGTGA+AGG | 0.663216 | 8.1:+77364484 | None:intergenic |
GGTTTATAAGGATATTCCTG+AGG | 0.670816 | 8.1:+77363951 | None:intergenic |
CTGAAAGTTGGAATCCAATG+TGG | 0.673790 | 8.1:-77363665 | MS.gene25036:CDS |
TGACCAGACTCTGATGACGT+TGG | 0.691665 | 8.1:+77362580 | None:intergenic |
GCATGACAACACCTAATGGG+CGG | 0.704176 | 8.1:-77363831 | MS.gene25036:CDS |
CTGGTCAAGATAAAAGTCCG+AGG | 0.704739 | 8.1:-77362564 | MS.gene25036:CDS |
AGAAGGCACCTGATTCCAGG+AGG | 0.717165 | 8.1:+77363930 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAAAATTAAAACATAAA+AGG | + | chr8.1:77363798-77363817 | None:intergenic | 10.0% |
!! | GAAAAAATTAAAACATAAAA+GGG | + | chr8.1:77363797-77363816 | None:intergenic | 10.0% |
!!! | TAATTTTTTCTTTTGAAATT+TGG | - | chr8.1:77363807-77363826 | MS.gene25036:CDS | 10.0% |
!!! | TCACTATTTATTTTTATTTA+TGG | - | chr8.1:77362496-77362515 | MS.gene25036:CDS | 10.0% |
!!! | ACATTTTCCTTTATATTAAA+TGG | + | chr8.1:77364486-77364505 | None:intergenic | 15.0% |
!! | AAAATTAAACTGTAGCAATA+TGG | + | chr8.1:77363667-77363686 | None:intergenic | 20.0% |
!! | AAATTAAACTGTAGCAATAT+GGG | + | chr8.1:77363666-77363685 | None:intergenic | 20.0% |
!! | AAGTTGAGATATTAATAAAC+TGG | + | chr8.1:77363350-77363369 | None:intergenic | 20.0% |
!! | AGTTGAGATATTAATAAACT+GGG | + | chr8.1:77363349-77363368 | None:intergenic | 20.0% |
!! | TTCAAATATTATGATGATCT+AGG | + | chr8.1:77362806-77362825 | None:intergenic | 20.0% |
!!! | AAGGGTTTTTCATAAAAAAA+TGG | - | chr8.1:77364295-77364314 | MS.gene25036:intron | 20.0% |
!!! | AATTTTATTACTGTATTTGC+AGG | - | chr8.1:77362850-77362869 | MS.gene25036:intron | 20.0% |
!!! | TTTTTATGAAAAACCCTTTT+CGG | + | chr8.1:77364293-77364312 | None:intergenic | 20.0% |
! | AACAGAATATGTTGAATCTT+TGG | - | chr8.1:77362998-77363017 | MS.gene25036:intron | 25.0% |
! | ATAAATACACAAGAATAGAG+AGG | + | chr8.1:77362585-77362604 | None:intergenic | 25.0% |
! | CATGGTATGTTATTATGTTA+TGG | - | chr8.1:77363954-77363973 | MS.gene25036:CDS | 25.0% |
! | CTGAATAATTGTTTCATGAT+TGG | - | chr8.1:77362726-77362745 | MS.gene25036:intron | 25.0% |
! | CTGACAATATAGTAGTATTA+AGG | + | chr8.1:77363109-77363128 | None:intergenic | 25.0% |
! | TCATGCTATAAACATTTCAT+CGG | + | chr8.1:77362642-77362661 | None:intergenic | 25.0% |
! | TCTTGTGTATTTATGTATCT+GGG | - | chr8.1:77362591-77362610 | MS.gene25036:CDS | 25.0% |
! | TGTTGAGCCATTTAATATAA+AGG | - | chr8.1:77364476-77364495 | MS.gene25036:intron | 25.0% |
! | TTCATATTCTAATTGAACTC+TGG | - | chr8.1:77363981-77364000 | MS.gene25036:CDS | 25.0% |
! | TTCTTGTGTATTTATGTATC+TGG | - | chr8.1:77362590-77362609 | MS.gene25036:CDS | 25.0% |
! | TTGTTTGCTCATAAGATATT+GGG | - | chr8.1:77364026-77364045 | MS.gene25036:intron | 25.0% |
! | TTTGTTTGCTCATAAGATAT+TGG | - | chr8.1:77364025-77364044 | MS.gene25036:intron | 25.0% |
!! | AAAAAGAGTGATTTTCCTTA+TGG | + | chr8.1:77364126-77364145 | None:intergenic | 25.0% |
!! | AAGCTCTAATATCCAAAAAT+GGG | - | chr8.1:77362973-77362992 | MS.gene25036:intron | 25.0% |
!! | ATATTCTGTTTTCCCATTTT+TGG | + | chr8.1:77362988-77363007 | None:intergenic | 25.0% |
!! | CATTATAAAAAGTACGAACT+TGG | + | chr8.1:77363530-77363549 | None:intergenic | 25.0% |
!! | CTTTTGTTAAGCCATTATTA+TGG | + | chr8.1:77364404-77364423 | None:intergenic | 25.0% |
!! | GTAATTTATTTGTTAGCTAG+TGG | - | chr8.1:77363168-77363187 | MS.gene25036:intron | 25.0% |
!! | TAAAATTGTTGTTCCGAAAA+GGG | - | chr8.1:77364277-77364296 | MS.gene25036:intron | 25.0% |
!! | TAATTGTTTCATGATTGGTT+AGG | - | chr8.1:77362731-77362750 | MS.gene25036:intron | 25.0% |
!! | TTTTACGTTTGTTTACCATA+AGG | - | chr8.1:77364108-77364127 | MS.gene25036:intron | 25.0% |
!!! | AGTTTTGAAGTTCTTTTATG+TGG | - | chr8.1:77363765-77363784 | MS.gene25036:intron | 25.0% |
!!! | CTACAGTTTAATTTTTCTGT+GGG | - | chr8.1:77363672-77363691 | MS.gene25036:CDS | 25.0% |
!!! | CTCTTTGAAATCATTATTGA+TGG | + | chr8.1:77364160-77364179 | None:intergenic | 25.0% |
!!! | TACAGTTTAATTTTTCTGTG+GGG | - | chr8.1:77363673-77363692 | MS.gene25036:CDS | 25.0% |
!!! | TAGTATTTTGATGTTGTTTG+TGG | - | chr8.1:77362616-77362635 | MS.gene25036:CDS | 25.0% |
!!! | TTTTTAGGTGGATATTACTA+TGG | - | chr8.1:77363396-77363415 | MS.gene25036:intron | 25.0% |
ACTATAGACACACTATTAAG+AGG | + | chr8.1:77362704-77362723 | None:intergenic | 30.0% | |
AGGAGAAAGGAAACATATAT+AGG | + | chr8.1:77362684-77362703 | None:intergenic | 30.0% | |
AGTATGCTGCATTCATAAAT+TGG | + | chr8.1:77363916-77363935 | None:intergenic | 30.0% | |
AGTTTGAGTAGCCATAATAA+TGG | - | chr8.1:77364390-77364409 | MS.gene25036:intron | 30.0% | |
ATACTACTATATTGTCAGCA+AGG | - | chr8.1:77363111-77363130 | MS.gene25036:intron | 30.0% | |
ATGTTTATAGCATGAATGAC+TGG | - | chr8.1:77362647-77362666 | MS.gene25036:CDS | 30.0% | |
GATATTAATAAACTGGGTGT+TGG | + | chr8.1:77363343-77363362 | None:intergenic | 30.0% | |
GATTTGTGTTCCACAATTAA+TGG | - | chr8.1:77364684-77364703 | MS.gene25036:intron | 30.0% | |
TATTACTCTTCTCCATCTTT+GGG | - | chr8.1:77364951-77364970 | MS.gene25036:CDS | 30.0% | |
TCATATCTCAGATTACGTAT+TGG | - | chr8.1:77363221-77363240 | MS.gene25036:intron | 30.0% | |
TGGGTAACTATGATACAAAT+CGG | + | chr8.1:77363647-77363666 | None:intergenic | 30.0% | |
TGTTTATAGCATGAATGACT+GGG | - | chr8.1:77362648-77362667 | MS.gene25036:CDS | 30.0% | |
TTATTACTCTTCTCCATCTT+TGG | - | chr8.1:77364950-77364969 | MS.gene25036:CDS | 30.0% | |
! | CAAGCTCTAATATCCAAAAA+TGG | - | chr8.1:77362972-77362991 | MS.gene25036:intron | 30.0% |
! | CTAAAATTGTTGTTCCGAAA+AGG | - | chr8.1:77364276-77364295 | MS.gene25036:intron | 30.0% |
! | CTTTTCGGAACAACAATTTT+AGG | + | chr8.1:77364278-77364297 | None:intergenic | 30.0% |
! | TAGTGAAGAGCAATTTTTGT+CGG | + | chr8.1:77362482-77362501 | None:intergenic | 30.0% |
! | TTGTAAGTTCTTTTACCCAT+TGG | - | chr8.1:77363613-77363632 | MS.gene25036:intron | 30.0% |
!! | GCTACAGTTTAATTTTTCTG+TGG | - | chr8.1:77363671-77363690 | MS.gene25036:CDS | 30.0% |
!! | TAATTTGCTAAACCTGAGAA+AGG | + | chr8.1:77363264-77363283 | None:intergenic | 30.0% |
!!! | ACGTTTTTTGTTCGCTTTTT+AGG | - | chr8.1:77363381-77363400 | MS.gene25036:intron | 30.0% |
!!! | TTTTTTGTTCGCTTTTTAGG+TGG | - | chr8.1:77363384-77363403 | MS.gene25036:intron | 30.0% |
AAGGAAAGAGCCATTAATTG+TGG | + | chr8.1:77364697-77364716 | None:intergenic | 35.0% | |
ACACACTATTAAGAGGAGAA+AGG | + | chr8.1:77362697-77362716 | None:intergenic | 35.0% | |
AGTAATAACATCATCCAGGT+TGG | + | chr8.1:77364938-77364957 | None:intergenic | 35.0% | |
ATCTCAGATTACGTATTGGA+AGG | - | chr8.1:77363225-77363244 | MS.gene25036:intron | 35.0% | |
ATGATCTAGGCAATTGATAC+AGG | + | chr8.1:77362793-77362812 | None:intergenic | 35.0% | |
ATTACTCTTCTCCATCTTTG+GGG | - | chr8.1:77364952-77364971 | MS.gene25036:CDS | 35.0% | |
CAAACAAATGCCATATGAGA+TGG | + | chr8.1:77364013-77364032 | None:intergenic | 35.0% | |
CTGCACAACAAAATAAGCAT+TGG | + | chr8.1:77362524-77362543 | None:intergenic | 35.0% | |
GAAGAGTAATAACATCATCC+AGG | + | chr8.1:77364942-77364961 | None:intergenic | 35.0% | |
GAATATCCTTATAAACCTCC+TGG | - | chr8.1:77363438-77363457 | MS.gene25036:intron | 35.0% | |
GGTTTATAAGGATATTCCTG+AGG | + | chr8.1:77363435-77363454 | None:intergenic | 35.0% | |
TACTATATTGTCAGCAAGGA+AGG | - | chr8.1:77363115-77363134 | MS.gene25036:intron | 35.0% | |
TATGAATGCAGCATACTTAC+CGG | - | chr8.1:77363919-77363938 | MS.gene25036:intron | 35.0% | |
TGGAAAAATCAAGTTTCCTC+AGG | - | chr8.1:77363416-77363435 | MS.gene25036:intron | 35.0% | |
TGGTTGTATTGTTTGCACTA+GGG | - | chr8.1:77363827-77363846 | MS.gene25036:CDS | 35.0% | |
TTGGTTGTATTGTTTGCACT+AGG | - | chr8.1:77363826-77363845 | MS.gene25036:CDS | 35.0% | |
! | TTGTTTTCCAAAACAGACCT+CGG | + | chr8.1:77364839-77364858 | None:intergenic | 35.0% |
!! | AAATCGGTTTGTCTTCCAAT+GGG | + | chr8.1:77363631-77363650 | None:intergenic | 35.0% |
!! | TTAGCTTGTTCTGTGATCAT+TGG | - | chr8.1:77362552-77362571 | MS.gene25036:CDS | 35.0% |
AACAAAACTTACGCCACTCA+AGG | + | chr8.1:77362919-77362938 | None:intergenic | 40.0% | |
ACCCAAAAAACCGCTAAAAG+AGG | + | chr8.1:77364342-77364361 | None:intergenic | 40.0% | |
AGAAGACTTGAAAAGGGTTG+AGG | - | chr8.1:77364874-77364893 | MS.gene25036:intron | 40.0% | |
AGCTTATGAACACCTACAAC+GGG | + | chr8.1:77364457-77364476 | None:intergenic | 40.0% | |
AGGCAAATGCAAGAGTGATA+TGG | + | chr8.1:77364322-77364341 | None:intergenic | 40.0% | |
ATCCAATGTGGTCTGTATCA+AGG | - | chr8.1:77363730-77363749 | MS.gene25036:intron | 40.0% | |
ATGAATGCAGCATACTTACC+GGG | - | chr8.1:77363920-77363939 | MS.gene25036:intron | 40.0% | |
CACAGGAGAAGACTTGAAAA+GGG | - | chr8.1:77364868-77364887 | MS.gene25036:intron | 40.0% | |
CACATTGGATTCCAACTTTC+AGG | + | chr8.1:77363720-77363739 | None:intergenic | 40.0% | |
CAGCTTATGAACACCTACAA+CGG | + | chr8.1:77364458-77364477 | None:intergenic | 40.0% | |
CTACAGTGTGTACTTCACAA+AGG | - | chr8.1:77362754-77362773 | MS.gene25036:intron | 40.0% | |
CTGAAAGTTGGAATCCAATG+TGG | - | chr8.1:77363718-77363737 | MS.gene25036:intron | 40.0% | |
CTGATTCCAGGAGGTTTATA+AGG | + | chr8.1:77363447-77363466 | None:intergenic | 40.0% | |
CTGGTTTCTTCCATCTCATA+TGG | - | chr8.1:77364000-77364019 | MS.gene25036:intron | 40.0% | |
CTTATAAACCTCCTGGAATC+AGG | - | chr8.1:77363445-77363464 | MS.gene25036:intron | 40.0% | |
GAAAACAAGGATTTCCAACC+TGG | - | chr8.1:77364921-77364940 | MS.gene25036:intron | 40.0% | |
GAAAACAATGTAGAGTCCAC+AGG | - | chr8.1:77364851-77364870 | MS.gene25036:intron | 40.0% | |
GAAGACTTGAAAAGGGTTGA+GGG | - | chr8.1:77364875-77364894 | MS.gene25036:intron | 40.0% | |
GAGACATTGCTCAATGTTGA+TGG | + | chr8.1:77364663-77364682 | None:intergenic | 40.0% | |
GGCAAATGCAAGAGTGATAT+GGG | + | chr8.1:77364321-77364340 | None:intergenic | 40.0% | |
GTAAAACCCATATGACCAAC+TGG | - | chr8.1:77363041-77363060 | MS.gene25036:intron | 40.0% | |
GTAGCATGACAACACCTAAT+GGG | - | chr8.1:77363549-77363568 | MS.gene25036:intron | 40.0% | |
GTATTGTTTGCACTAGGGAA+TGG | - | chr8.1:77363832-77363851 | MS.gene25036:CDS | 40.0% | |
GTTTCAGCTGTATTGTGTGT+TGG | - | chr8.1:77363307-77363326 | MS.gene25036:intron | 40.0% | |
TACCATGAATGAAAGAAGCC+CGG | + | chr8.1:77363941-77363960 | None:intergenic | 40.0% | |
TCAAGAATGCTGCAACAAGA+AGG | + | chr8.1:77363473-77363492 | None:intergenic | 40.0% | |
TGTAGCATGACAACACCTAA+TGG | - | chr8.1:77363548-77363567 | MS.gene25036:intron | 40.0% | |
TTGCAGTTCATCCTGAAAGT+TGG | - | chr8.1:77363706-77363725 | MS.gene25036:intron | 40.0% | |
! | ACAGACTTCTCTTTTGCAGA+TGG | - | chr8.1:77364535-77364554 | MS.gene25036:intron | 40.0% |
! | CTTGCATTTGCCTCTTTTAG+CGG | - | chr8.1:77364329-77364348 | MS.gene25036:intron | 40.0% |
! | GCCTCTTTTAGCGGTTTTTT+GGG | - | chr8.1:77364338-77364357 | MS.gene25036:intron | 40.0% |
! | TAAAAGTCCGAGGTCTGTTT+TGG | - | chr8.1:77364829-77364848 | MS.gene25036:intron | 40.0% |
! | TCAAGGATATCACTTGGTGA+AGG | + | chr8.1:77362902-77362921 | None:intergenic | 40.0% |
! | TGCCTCTTTTAGCGGTTTTT+TGG | - | chr8.1:77364337-77364356 | MS.gene25036:intron | 40.0% |
!! | ATTGCTCAATGTTGATGGTG+CGG | + | chr8.1:77364658-77364677 | None:intergenic | 40.0% |
!! | CAAACCTTACTTTTGCTCTC+AGG | - | chr8.1:77363075-77363094 | MS.gene25036:intron | 40.0% |
!! | CAAATCGGTTTGTCTTCCAA+TGG | + | chr8.1:77363632-77363651 | None:intergenic | 40.0% |
!!! | CTTTTAGCGGTTTTTTGGGT+AGG | - | chr8.1:77364342-77364361 | MS.gene25036:intron | 40.0% |
!!! | GTTTTTTGGGTAGGTTGGTT+GGG | - | chr8.1:77364351-77364370 | MS.gene25036:intron | 40.0% |
AGAGCCTGAGAGCAAAAGTA+AGG | + | chr8.1:77363082-77363101 | None:intergenic | 45.0% | |
AGTAGTGTTTACACTGCCAG+TGG | + | chr8.1:77364573-77364592 | None:intergenic | 45.0% | |
CACCAAGTGATATCCTTGAG+TGG | - | chr8.1:77362903-77362922 | MS.gene25036:intron | 45.0% | |
CAGTGTGTACTTCACAAAGG+TGG | - | chr8.1:77362757-77362776 | MS.gene25036:intron | 45.0% | |
CCACAGGAGAAGACTTGAAA+AGG | - | chr8.1:77364867-77364886 | MS.gene25036:intron | 45.0% | |
CTGGTCAAGATAAAAGTCCG+AGG | - | chr8.1:77364819-77364838 | MS.gene25036:intron | 45.0% | |
CTTATGAACACCTACAACGG+GGG | + | chr8.1:77364455-77364474 | None:intergenic | 45.0% | |
GAAAAGGGTTGAGGGATTGA+AGG | - | chr8.1:77364883-77364902 | MS.gene25036:intron | 45.0% | |
GACCTTGATACAGACCACAT+TGG | + | chr8.1:77363735-77363754 | None:intergenic | 45.0% | |
GCGAGGAGAAACAGAAAACA+AGG | - | chr8.1:77364908-77364927 | MS.gene25036:intron | 45.0% | |
GCTTATGAACACCTACAACG+GGG | + | chr8.1:77364456-77364475 | None:intergenic | 45.0% | |
GTGCTCTATACTCCTTCTGA+AGG | + | chr8.1:77362428-77362447 | None:intergenic | 45.0% | |
GTTGTACTTCTCCACGTACT+CGG | + | chr8.1:77364747-77364766 | None:intergenic | 45.0% | |
TACCGGGCTTCTTTCATTCA+TGG | - | chr8.1:77363936-77363955 | MS.gene25036:intron | 45.0% | |
TACGTATTGGAAGGAAGCGA+GGG | - | chr8.1:77363234-77363253 | MS.gene25036:intron | 45.0% | |
TGCCATAACAACCCCAAAGA+TGG | + | chr8.1:77364966-77364985 | None:intergenic | 45.0% | |
TTACGTATTGGAAGGAAGCG+AGG | - | chr8.1:77363233-77363252 | MS.gene25036:intron | 45.0% | |
TTCCTGAATGTTGCACTGCA+AGG | + | chr8.1:77364716-77364735 | None:intergenic | 45.0% | |
TTCCTTGCAGTGCAACATTC+AGG | - | chr8.1:77364711-77364730 | MS.gene25036:intron | 45.0% | |
TTGCGACCAGTTGGTCATAT+GGG | + | chr8.1:77363050-77363069 | None:intergenic | 45.0% | |
TTGTACTTCTCCACGTACTC+GGG | + | chr8.1:77364746-77364765 | None:intergenic | 45.0% | |
! | GATATCACTTGGTGAAGGAC+GGG | + | chr8.1:77362897-77362916 | None:intergenic | 45.0% |
! | GGATATCACTTGGTGAAGGA+CGG | + | chr8.1:77362898-77362917 | None:intergenic | 45.0% |
! | TTTTGCTAGACGCTGCTTCT+CGG | + | chr8.1:77364600-77364619 | None:intergenic | 45.0% |
!! | CTCCATCTTTGGGGTTGTTA+TGG | - | chr8.1:77364961-77364980 | MS.gene25036:CDS | 45.0% |
!!! | CCTTTTCAAGTCTTCTCCTG+TGG | + | chr8.1:77364870-77364889 | None:intergenic | 45.0% |
!!! | GGTTTTTTGGGTAGGTTGGT+TGG | - | chr8.1:77364350-77364369 | MS.gene25036:intron | 45.0% |
!!! | TAGCGGTTTTTTGGGTAGGT+TGG | - | chr8.1:77364346-77364365 | MS.gene25036:intron | 45.0% |
ATGCATCAAGCGCCTTCAGA+AGG | - | chr8.1:77362413-77362432 | MS.gene25036:CDS | 50.0% | |
ATGGATACCAGTCCAACCAC+TGG | - | chr8.1:77364554-77364573 | MS.gene25036:intron | 50.0% | |
CGCCACTCAAGGATATCACT+TGG | + | chr8.1:77362908-77362927 | None:intergenic | 50.0% | |
GCATGACAACACCTAATGGG+CGG | - | chr8.1:77363552-77363571 | MS.gene25036:intron | 50.0% | |
GGAGCCAGTTTCCCATATTG+TGG | - | chr8.1:77362871-77362890 | MS.gene25036:intron | 50.0% | |
GTGTTTACACTGCCAGTGGT+TGG | + | chr8.1:77364569-77364588 | None:intergenic | 50.0% | |
GTTGCGACCAGTTGGTCATA+TGG | + | chr8.1:77363051-77363070 | None:intergenic | 50.0% | |
TGAAGGACGGGCCACAATAT+GGG | + | chr8.1:77362885-77362904 | None:intergenic | 50.0% | |
TGTACTTCTCCACGTACTCG+GGG | + | chr8.1:77364745-77364764 | None:intergenic | 50.0% | |
TGTGTCATGAACCGCCCATT+AGG | + | chr8.1:77363566-77363585 | None:intergenic | 50.0% | |
TTGAGGGATTGAAGGATGCG+AGG | - | chr8.1:77364891-77364910 | MS.gene25036:intron | 50.0% | |
TTGTTAAGCTCCCCCGTTGT+AGG | - | chr8.1:77364442-77364461 | MS.gene25036:intron | 50.0% | |
! | TGACCAGACTCTGATGACGT+TGG | + | chr8.1:77364806-77364825 | None:intergenic | 50.0% |
!! | ACAAGAAGGCACCTGATTCC+AGG | + | chr8.1:77363459-77363478 | None:intergenic | 50.0% |
!! | TTGGGTAGGTTGGTTGGGAT+GGG | - | chr8.1:77364356-77364375 | MS.gene25036:intron | 50.0% |
!! | TTTGGGTAGGTTGGTTGGGA+TGG | - | chr8.1:77364355-77364374 | MS.gene25036:intron | 50.0% |
AGCGAGGGAACACCTTTCTC+AGG | - | chr8.1:77363249-77363268 | MS.gene25036:intron | 55.0% | |
CAGCCAACGTCATCAGAGTC+TGG | - | chr8.1:77364800-77364819 | MS.gene25036:intron | 55.0% | |
CGGGCCACAATATGGGAAAC+TGG | + | chr8.1:77362878-77362897 | None:intergenic | 55.0% | |
GAAGATGTTCCCCGAGTACG+TGG | - | chr8.1:77364733-77364752 | MS.gene25036:intron | 55.0% | |
GTGAAGGACGGGCCACAATA+TGG | + | chr8.1:77362886-77362905 | None:intergenic | 55.0% | |
TACACTGCCAGTGGTTGGAC+TGG | + | chr8.1:77364564-77364583 | None:intergenic | 55.0% | |
TTTGCTGCGTTGCGACCAGT+TGG | + | chr8.1:77363059-77363078 | None:intergenic | 55.0% | |
!! | AGAAGGCACCTGATTCCAGG+AGG | + | chr8.1:77363456-77363475 | None:intergenic | 55.0% |
!! | GTAGGTTGGTTGGGATGGGA+GGG | - | chr8.1:77364360-77364379 | MS.gene25036:intron | 55.0% |
!! | TAGGTTGGTTGGGATGGGAG+GGG | - | chr8.1:77364361-77364380 | MS.gene25036:intron | 55.0% |
!! | GGTAGGTTGGTTGGGATGGG+AGG | - | chr8.1:77364359-77364378 | MS.gene25036:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 77362399 | 77365006 | 77362399 | ID=MS.gene25036 |
chr8.1 | mRNA | 77362399 | 77365006 | 77362399 | ID=MS.gene25036.t1;Parent=MS.gene25036 |
chr8.1 | exon | 77364950 | 77365006 | 77364950 | ID=MS.gene25036.t1.exon1;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77364950 | 77365006 | 77364950 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
chr8.1 | exon | 77364479 | 77364533 | 77364479 | ID=MS.gene25036.t1.exon2;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77364479 | 77364533 | 77364479 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
chr8.1 | exon | 77364135 | 77364173 | 77364135 | ID=MS.gene25036.t1.exon3;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77364135 | 77364173 | 77364135 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
chr8.1 | exon | 77363939 | 77364002 | 77363939 | ID=MS.gene25036.t1.exon4;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77363939 | 77364002 | 77363939 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
chr8.1 | exon | 77363791 | 77363852 | 77363791 | ID=MS.gene25036.t1.exon5;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77363791 | 77363852 | 77363791 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
chr8.1 | exon | 77363654 | 77363693 | 77363654 | ID=MS.gene25036.t1.exon6;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77363654 | 77363693 | 77363654 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
chr8.1 | exon | 77363448 | 77363475 | 77363448 | ID=MS.gene25036.t1.exon7;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77363448 | 77363475 | 77363448 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
chr8.1 | exon | 77362760 | 77362851 | 77362760 | ID=MS.gene25036.t1.exon8;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77362760 | 77362851 | 77362760 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
chr8.1 | exon | 77362399 | 77362684 | 77362399 | ID=MS.gene25036.t1.exon9;Parent=MS.gene25036.t1 |
chr8.1 | CDS | 77362399 | 77362684 | 77362399 | ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1 |
Gene Sequence |
Protein sequence |