AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25036


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25036.t1 MTR_8g023380 96.680 241 7 1 1 240 1 241 2.54e-177 486
MS.gene25036.t1 MTR_4g121960 34.637 179 112 3 6 182 11 186 9.76e-34 123
MS.gene25036.t1 MTR_8g071040 34.188 117 68 3 8 120 4 115 5.65e-17 75.5
MS.gene25036.t1 MTR_1g021150 34.188 117 68 3 8 120 4 115 7.20e-16 72.8
MS.gene25036.t1 MTR_3g062450 32.479 117 70 3 8 120 4 115 1.05e-15 72.0
MS.gene25036.t1 MTR_8g468530 31.092 119 73 3 8 122 23 136 1.08e-15 72.8
MS.gene25036.t1 MTR_5g075580 32.479 117 70 3 8 120 4 115 1.10e-15 72.0
MS.gene25036.t1 MTR_4g108080 31.092 119 73 3 8 122 7 120 1.80e-15 71.6
MS.gene25036.t1 MTR_7g116940 32.479 117 70 3 8 120 4 115 2.03e-15 71.2
MS.gene25036.t1 MTR_4g073240 31.624 117 71 3 8 120 4 115 2.55e-15 71.2
MS.gene25036.t1 MTR_7g116940 33.333 111 65 3 8 114 4 109 1.44e-13 65.9
MS.gene25036.t1 MTR_4g108080 31.481 108 65 3 8 111 7 109 4.30e-13 64.3
MS.gene25036.t1 MTR_7g116940 30.973 113 69 3 8 116 4 111 5.31e-13 65.1
MS.gene25036.t1 MTR_8g085690 28.571 126 73 3 8 125 25 141 8.59e-13 64.7
MS.gene25036.t1 MTR_3g110110 29.600 125 78 4 4 122 2 122 9.33e-12 61.6
MS.gene25036.t1 MTR_1g021150 33.673 98 56 3 27 120 31 123 1.58e-11 61.2
MS.gene25036.t1 MTR_5g009020 33.621 116 68 3 4 115 31 141 3.22e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25036.t1 AT1G17280 77.500 240 51 2 1 240 1 237 4.20e-139 390
MS.gene25036.t1 AT1G17280 77.500 240 51 2 1 240 1 237 4.20e-139 390
MS.gene25036.t1 AT1G17280 77.500 240 51 2 1 240 1 237 4.20e-139 390
MS.gene25036.t1 AT1G17280 77.500 240 51 2 1 240 1 237 4.20e-139 390
MS.gene25036.t1 AT1G17280 77.500 240 51 2 1 240 1 237 4.20e-139 390
MS.gene25036.t1 AT1G17280 77.500 240 51 2 1 240 1 237 4.20e-139 390
MS.gene25036.t1 AT1G17280 77.500 240 51 2 1 240 1 237 4.20e-139 390
MS.gene25036.t1 AT1G17280 77.500 240 51 2 1 240 1 237 4.20e-139 390
MS.gene25036.t1 AT1G17280 75.610 246 51 3 1 240 1 243 1.55e-136 384
MS.gene25036.t1 AT5G50430 74.180 244 58 2 1 240 1 243 1.85e-136 383
MS.gene25036.t1 AT5G50430 74.180 244 58 2 1 240 1 243 1.85e-136 383
MS.gene25036.t1 AT5G50430 68.852 244 58 3 1 240 1 230 1.32e-121 345
MS.gene25036.t1 AT3G17000 41.912 136 76 2 6 139 12 146 1.23e-33 123
MS.gene25036.t1 AT5G56150 34.188 117 68 3 8 120 4 115 5.56e-17 75.5
MS.gene25036.t1 AT3G08690 34.188 117 68 3 8 120 4 115 3.69e-16 73.6
MS.gene25036.t1 AT3G08690 34.188 117 68 3 8 120 4 115 3.69e-16 73.6
MS.gene25036.t1 AT4G27960 33.333 117 69 3 8 120 4 115 6.07e-16 72.8
MS.gene25036.t1 AT1G64230 33.333 117 69 3 8 120 4 115 6.80e-16 72.8
MS.gene25036.t1 AT1G64230 33.333 117 69 3 8 120 4 115 6.80e-16 72.8
MS.gene25036.t1 AT2G02760 31.092 119 73 3 8 122 7 120 9.64e-16 72.4
MS.gene25036.t1 AT2G02760 31.092 119 73 3 8 122 7 120 9.64e-16 72.4
MS.gene25036.t1 AT2G02760 31.092 119 73 3 8 122 7 120 9.64e-16 72.4
MS.gene25036.t1 AT2G02760 31.092 119 73 3 8 122 7 120 9.64e-16 72.4
MS.gene25036.t1 AT5G41700 33.333 117 69 3 8 120 4 115 1.02e-15 72.4
MS.gene25036.t1 AT5G41700 33.333 117 69 3 8 120 4 115 1.02e-15 72.4
MS.gene25036.t1 AT5G41700 33.333 117 69 3 8 120 4 115 1.02e-15 72.4
MS.gene25036.t1 AT1G14400 31.092 119 73 3 8 122 7 120 1.14e-15 72.4
MS.gene25036.t1 AT1G14400 31.092 119 73 3 8 122 7 120 1.14e-15 72.4
MS.gene25036.t1 AT4G27960 33.333 117 69 3 8 120 34 145 1.66e-15 72.4
MS.gene25036.t1 AT5G41700 34.746 118 67 4 8 120 4 116 2.06e-15 71.6
MS.gene25036.t1 AT5G53300 32.479 117 70 3 8 120 4 115 2.17e-15 71.2
MS.gene25036.t1 AT5G53300 32.479 117 70 3 8 120 4 115 2.17e-15 71.2
MS.gene25036.t1 AT5G53300 32.479 117 70 3 8 120 4 115 2.17e-15 71.2
MS.gene25036.t1 AT5G62540 31.061 132 78 4 8 135 7 129 1.21e-14 69.3
MS.gene25036.t1 AT5G56150 33.929 112 64 4 8 115 4 109 1.78e-14 67.8
MS.gene25036.t1 AT2G16740 30.769 117 72 3 8 120 4 115 3.11e-14 68.2
MS.gene25036.t1 AT1G64230 30.000 120 71 4 5 120 47 157 1.43e-13 67.4
MS.gene25036.t1 AT1G64230 30.000 120 71 4 5 120 47 157 1.43e-13 67.4
MS.gene25036.t1 AT5G41700 33.654 104 60 3 8 107 4 102 3.39e-13 65.5
MS.gene25036.t1 AT1G64230 30.952 126 69 4 8 120 4 124 4.31e-13 65.5
MS.gene25036.t1 AT3G08700 31.356 118 71 4 8 120 4 116 5.85e-13 64.7
MS.gene25036.t1 AT3G08700 31.356 118 71 4 8 120 4 116 5.85e-13 64.7
MS.gene25036.t1 AT5G53300 32.692 104 61 3 8 107 4 102 1.93e-12 62.4
MS.gene25036.t1 AT1G36340 30.841 107 68 3 3 107 6 108 2.70e-12 63.2
MS.gene25036.t1 AT1G36340 30.841 107 68 3 3 107 6 108 2.70e-12 63.2
MS.gene25036.t1 AT5G25760 28.800 125 79 4 4 122 2 122 2.74e-11 60.5
MS.gene25036.t1 AT5G25760 28.800 125 79 4 4 122 2 122 2.74e-11 60.5
MS.gene25036.t1 AT3G13550 28.319 113 80 1 8 120 39 150 8.23e-11 59.3

Find 67 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGGATTCCAACTTTC+AGG 0.160053 8.1:+77363666 None:intergenic
TTATTACTCTTCTCCATCTT+TGG 0.164344 8.1:-77362433 MS.gene25036:CDS
CTCCATCTTTGGGGTTGTTA+TGG 0.233457 8.1:-77362422 MS.gene25036:CDS
GTGAAGGACGGGCCACAATA+TGG 0.237187 8.1:+77364500 None:intergenic
TATTACTCTTCTCCATCTTT+GGG 0.241159 8.1:-77362432 MS.gene25036:CDS
CTGATTCCAGGAGGTTTATA+AGG 0.284681 8.1:+77363939 None:intergenic
TAAAAGTCCGAGGTCTGTTT+TGG 0.291867 8.1:-77362554 MS.gene25036:CDS
TTCCTTGCAGTGCAACATTC+AGG 0.294415 8.1:-77362672 MS.gene25036:intron
TATGAATGCAGCATACTTAC+CGG 0.344644 8.1:-77363464 MS.gene25036:intron
TACCGGGCTTCTTTCATTCA+TGG 0.353871 8.1:-77363447 MS.gene25036:intron
TGTAGCATGACAACACCTAA+TGG 0.360595 8.1:-77363835 MS.gene25036:intron
CTTATAAACCTCCTGGAATC+AGG 0.389083 8.1:-77363938 MS.gene25036:intron
CCACAGGAGAAGACTTGAAA+AGG 0.427561 8.1:-77362516 MS.gene25036:CDS
ACAAGAAGGCACCTGATTCC+AGG 0.429061 8.1:+77363927 None:intergenic
CGGGCCACAATATGGGAAAC+TGG 0.431636 8.1:+77364508 None:intergenic
GTTGTACTTCTCCACGTACT+CGG 0.441817 8.1:+77362639 None:intergenic
TGTGTCATGAACCGCCCATT+AGG 0.446261 8.1:+77363820 None:intergenic
GAAGACTTGAAAAGGGTTGA+GGG 0.448975 8.1:-77362508 MS.gene25036:CDS
AGCGAGGGAACACCTTTCTC+AGG 0.450214 8.1:-77364134 MS.gene25036:intron
TTGTACTTCTCCACGTACTC+GGG 0.458106 8.1:+77362640 None:intergenic
TTGCAGTTCATCCTGAAAGT+TGG 0.464526 8.1:-77363677 MS.gene25036:intron
GAAAAGGGTTGAGGGATTGA+AGG 0.471212 8.1:-77362500 MS.gene25036:CDS
GAATATCCTTATAAACCTCC+TGG 0.476050 8.1:-77363945 MS.gene25036:CDS
GTAGCATGACAACACCTAAT+GGG 0.487721 8.1:-77363834 MS.gene25036:intron
TGCCATAACAACCCCAAAGA+TGG 0.488741 8.1:+77362420 None:intergenic
CAGCCAACGTCATCAGAGTC+TGG 0.492973 8.1:-77362583 MS.gene25036:CDS
TGAAGGACGGGCCACAATAT+GGG 0.495022 8.1:+77364501 None:intergenic
AGAAGACTTGAAAAGGGTTG+AGG 0.497193 8.1:-77362509 MS.gene25036:CDS
TCATATCTCAGATTACGTAT+TGG 0.507101 8.1:-77364162 MS.gene25036:intron
GGAGCCAGTTTCCCATATTG+TGG 0.524830 8.1:-77364512 MS.gene25036:CDS
TACACTGCCAGTGGTTGGAC+TGG 0.524839 8.1:+77362822 None:intergenic
AGTAATAACATCATCCAGGT+TGG 0.531733 8.1:+77362448 None:intergenic
CGCCACTCAAGGATATCACT+TGG 0.535950 8.1:+77364478 None:intergenic
GAAAACAAGGATTTCCAACC+TGG 0.547451 8.1:-77362462 MS.gene25036:CDS
ATGCATCAAGCGCCTTCAGA+AGG 0.549944 8.1:-77364970 MS.gene25036:CDS
GATATCACTTGGTGAAGGAC+GGG 0.551464 8.1:+77364489 None:intergenic
ATCCAATGTGGTCTGTATCA+AGG 0.552283 8.1:-77363653 MS.gene25036:intron
ATTACTCTTCTCCATCTTTG+GGG 0.552481 8.1:-77362431 MS.gene25036:CDS
TAATTTGCTAAACCTGAGAA+AGG 0.560758 8.1:+77364122 None:intergenic
GGATATCACTTGGTGAAGGA+CGG 0.562956 8.1:+77364488 None:intergenic
GAAGAGTAATAACATCATCC+AGG 0.567563 8.1:+77362444 None:intergenic
TACCATGAATGAAAGAAGCC+CGG 0.570761 8.1:+77363445 None:intergenic
CACAGGAGAAGACTTGAAAA+GGG 0.572298 8.1:-77362515 MS.gene25036:CDS
GAAAACAATGTAGAGTCCAC+AGG 0.573857 8.1:-77362532 MS.gene25036:CDS
TTGAGGGATTGAAGGATGCG+AGG 0.577968 8.1:-77362492 MS.gene25036:CDS
GTGCTCTATACTCCTTCTGA+AGG 0.582054 8.1:+77364958 None:intergenic
ATGAATGCAGCATACTTACC+GGG 0.582437 8.1:-77363463 MS.gene25036:intron
ATCTCAGATTACGTATTGGA+AGG 0.583968 8.1:-77364158 MS.gene25036:intron
AACAAAACTTACGCCACTCA+AGG 0.586569 8.1:+77364467 None:intergenic
AAAATTCACAGCTGGAGTAG+AGG 0.587096 8.1:+77362394 None:intergenic
GTGTTTACACTGCCAGTGGT+TGG 0.587196 8.1:+77362817 None:intergenic
GAAGATGTTCCCCGAGTACG+TGG 0.599484 8.1:-77362650 MS.gene25036:CDS
TGTACTTCTCCACGTACTCG+GGG 0.603988 8.1:+77362641 None:intergenic
ATGGATACCAGTCCAACCAC+TGG 0.607472 8.1:-77362829 MS.gene25036:CDS
GACCTTGATACAGACCACAT+TGG 0.612471 8.1:+77363651 None:intergenic
TACGTATTGGAAGGAAGCGA+GGG 0.615267 8.1:-77364149 MS.gene25036:CDS
GCGAGGAGAAACAGAAAACA+AGG 0.615922 8.1:-77362475 MS.gene25036:CDS
TTACGTATTGGAAGGAAGCG+AGG 0.625291 8.1:-77364150 MS.gene25036:CDS
AGTAGTGTTTACACTGCCAG+TGG 0.639725 8.1:+77362813 None:intergenic
CACCAAGTGATATCCTTGAG+TGG 0.661819 8.1:-77364480 MS.gene25036:CDS
TCAAGGATATCACTTGGTGA+AGG 0.663216 8.1:+77364484 None:intergenic
GGTTTATAAGGATATTCCTG+AGG 0.670816 8.1:+77363951 None:intergenic
CTGAAAGTTGGAATCCAATG+TGG 0.673790 8.1:-77363665 MS.gene25036:CDS
TGACCAGACTCTGATGACGT+TGG 0.691665 8.1:+77362580 None:intergenic
GCATGACAACACCTAATGGG+CGG 0.704176 8.1:-77363831 MS.gene25036:CDS
CTGGTCAAGATAAAAGTCCG+AGG 0.704739 8.1:-77362564 MS.gene25036:CDS
AGAAGGCACCTGATTCCAGG+AGG 0.717165 8.1:+77363930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAATTAAAACATAAA+AGG + chr8.1:77363798-77363817 None:intergenic 10.0%
!! GAAAAAATTAAAACATAAAA+GGG + chr8.1:77363797-77363816 None:intergenic 10.0%
!!! TAATTTTTTCTTTTGAAATT+TGG - chr8.1:77363807-77363826 MS.gene25036:CDS 10.0%
!!! TCACTATTTATTTTTATTTA+TGG - chr8.1:77362496-77362515 MS.gene25036:CDS 10.0%
!!! ACATTTTCCTTTATATTAAA+TGG + chr8.1:77364486-77364505 None:intergenic 15.0%
!! AAAATTAAACTGTAGCAATA+TGG + chr8.1:77363667-77363686 None:intergenic 20.0%
!! AAATTAAACTGTAGCAATAT+GGG + chr8.1:77363666-77363685 None:intergenic 20.0%
!! AAGTTGAGATATTAATAAAC+TGG + chr8.1:77363350-77363369 None:intergenic 20.0%
!! AGTTGAGATATTAATAAACT+GGG + chr8.1:77363349-77363368 None:intergenic 20.0%
!! TTCAAATATTATGATGATCT+AGG + chr8.1:77362806-77362825 None:intergenic 20.0%
!!! AAGGGTTTTTCATAAAAAAA+TGG - chr8.1:77364295-77364314 MS.gene25036:intron 20.0%
!!! AATTTTATTACTGTATTTGC+AGG - chr8.1:77362850-77362869 MS.gene25036:intron 20.0%
!!! TTTTTATGAAAAACCCTTTT+CGG + chr8.1:77364293-77364312 None:intergenic 20.0%
! AACAGAATATGTTGAATCTT+TGG - chr8.1:77362998-77363017 MS.gene25036:intron 25.0%
! ATAAATACACAAGAATAGAG+AGG + chr8.1:77362585-77362604 None:intergenic 25.0%
! CATGGTATGTTATTATGTTA+TGG - chr8.1:77363954-77363973 MS.gene25036:CDS 25.0%
! CTGAATAATTGTTTCATGAT+TGG - chr8.1:77362726-77362745 MS.gene25036:intron 25.0%
! CTGACAATATAGTAGTATTA+AGG + chr8.1:77363109-77363128 None:intergenic 25.0%
! TCATGCTATAAACATTTCAT+CGG + chr8.1:77362642-77362661 None:intergenic 25.0%
! TCTTGTGTATTTATGTATCT+GGG - chr8.1:77362591-77362610 MS.gene25036:CDS 25.0%
! TGTTGAGCCATTTAATATAA+AGG - chr8.1:77364476-77364495 MS.gene25036:intron 25.0%
! TTCATATTCTAATTGAACTC+TGG - chr8.1:77363981-77364000 MS.gene25036:CDS 25.0%
! TTCTTGTGTATTTATGTATC+TGG - chr8.1:77362590-77362609 MS.gene25036:CDS 25.0%
! TTGTTTGCTCATAAGATATT+GGG - chr8.1:77364026-77364045 MS.gene25036:intron 25.0%
! TTTGTTTGCTCATAAGATAT+TGG - chr8.1:77364025-77364044 MS.gene25036:intron 25.0%
!! AAAAAGAGTGATTTTCCTTA+TGG + chr8.1:77364126-77364145 None:intergenic 25.0%
!! AAGCTCTAATATCCAAAAAT+GGG - chr8.1:77362973-77362992 MS.gene25036:intron 25.0%
!! ATATTCTGTTTTCCCATTTT+TGG + chr8.1:77362988-77363007 None:intergenic 25.0%
!! CATTATAAAAAGTACGAACT+TGG + chr8.1:77363530-77363549 None:intergenic 25.0%
!! CTTTTGTTAAGCCATTATTA+TGG + chr8.1:77364404-77364423 None:intergenic 25.0%
!! GTAATTTATTTGTTAGCTAG+TGG - chr8.1:77363168-77363187 MS.gene25036:intron 25.0%
!! TAAAATTGTTGTTCCGAAAA+GGG - chr8.1:77364277-77364296 MS.gene25036:intron 25.0%
!! TAATTGTTTCATGATTGGTT+AGG - chr8.1:77362731-77362750 MS.gene25036:intron 25.0%
!! TTTTACGTTTGTTTACCATA+AGG - chr8.1:77364108-77364127 MS.gene25036:intron 25.0%
!!! AGTTTTGAAGTTCTTTTATG+TGG - chr8.1:77363765-77363784 MS.gene25036:intron 25.0%
!!! CTACAGTTTAATTTTTCTGT+GGG - chr8.1:77363672-77363691 MS.gene25036:CDS 25.0%
!!! CTCTTTGAAATCATTATTGA+TGG + chr8.1:77364160-77364179 None:intergenic 25.0%
!!! TACAGTTTAATTTTTCTGTG+GGG - chr8.1:77363673-77363692 MS.gene25036:CDS 25.0%
!!! TAGTATTTTGATGTTGTTTG+TGG - chr8.1:77362616-77362635 MS.gene25036:CDS 25.0%
!!! TTTTTAGGTGGATATTACTA+TGG - chr8.1:77363396-77363415 MS.gene25036:intron 25.0%
ACTATAGACACACTATTAAG+AGG + chr8.1:77362704-77362723 None:intergenic 30.0%
AGGAGAAAGGAAACATATAT+AGG + chr8.1:77362684-77362703 None:intergenic 30.0%
AGTATGCTGCATTCATAAAT+TGG + chr8.1:77363916-77363935 None:intergenic 30.0%
AGTTTGAGTAGCCATAATAA+TGG - chr8.1:77364390-77364409 MS.gene25036:intron 30.0%
ATACTACTATATTGTCAGCA+AGG - chr8.1:77363111-77363130 MS.gene25036:intron 30.0%
ATGTTTATAGCATGAATGAC+TGG - chr8.1:77362647-77362666 MS.gene25036:CDS 30.0%
GATATTAATAAACTGGGTGT+TGG + chr8.1:77363343-77363362 None:intergenic 30.0%
GATTTGTGTTCCACAATTAA+TGG - chr8.1:77364684-77364703 MS.gene25036:intron 30.0%
TATTACTCTTCTCCATCTTT+GGG - chr8.1:77364951-77364970 MS.gene25036:CDS 30.0%
TCATATCTCAGATTACGTAT+TGG - chr8.1:77363221-77363240 MS.gene25036:intron 30.0%
TGGGTAACTATGATACAAAT+CGG + chr8.1:77363647-77363666 None:intergenic 30.0%
TGTTTATAGCATGAATGACT+GGG - chr8.1:77362648-77362667 MS.gene25036:CDS 30.0%
TTATTACTCTTCTCCATCTT+TGG - chr8.1:77364950-77364969 MS.gene25036:CDS 30.0%
! CAAGCTCTAATATCCAAAAA+TGG - chr8.1:77362972-77362991 MS.gene25036:intron 30.0%
! CTAAAATTGTTGTTCCGAAA+AGG - chr8.1:77364276-77364295 MS.gene25036:intron 30.0%
! CTTTTCGGAACAACAATTTT+AGG + chr8.1:77364278-77364297 None:intergenic 30.0%
! TAGTGAAGAGCAATTTTTGT+CGG + chr8.1:77362482-77362501 None:intergenic 30.0%
! TTGTAAGTTCTTTTACCCAT+TGG - chr8.1:77363613-77363632 MS.gene25036:intron 30.0%
!! GCTACAGTTTAATTTTTCTG+TGG - chr8.1:77363671-77363690 MS.gene25036:CDS 30.0%
!! TAATTTGCTAAACCTGAGAA+AGG + chr8.1:77363264-77363283 None:intergenic 30.0%
!!! ACGTTTTTTGTTCGCTTTTT+AGG - chr8.1:77363381-77363400 MS.gene25036:intron 30.0%
!!! TTTTTTGTTCGCTTTTTAGG+TGG - chr8.1:77363384-77363403 MS.gene25036:intron 30.0%
AAGGAAAGAGCCATTAATTG+TGG + chr8.1:77364697-77364716 None:intergenic 35.0%
ACACACTATTAAGAGGAGAA+AGG + chr8.1:77362697-77362716 None:intergenic 35.0%
AGTAATAACATCATCCAGGT+TGG + chr8.1:77364938-77364957 None:intergenic 35.0%
ATCTCAGATTACGTATTGGA+AGG - chr8.1:77363225-77363244 MS.gene25036:intron 35.0%
ATGATCTAGGCAATTGATAC+AGG + chr8.1:77362793-77362812 None:intergenic 35.0%
ATTACTCTTCTCCATCTTTG+GGG - chr8.1:77364952-77364971 MS.gene25036:CDS 35.0%
CAAACAAATGCCATATGAGA+TGG + chr8.1:77364013-77364032 None:intergenic 35.0%
CTGCACAACAAAATAAGCAT+TGG + chr8.1:77362524-77362543 None:intergenic 35.0%
GAAGAGTAATAACATCATCC+AGG + chr8.1:77364942-77364961 None:intergenic 35.0%
GAATATCCTTATAAACCTCC+TGG - chr8.1:77363438-77363457 MS.gene25036:intron 35.0%
GGTTTATAAGGATATTCCTG+AGG + chr8.1:77363435-77363454 None:intergenic 35.0%
TACTATATTGTCAGCAAGGA+AGG - chr8.1:77363115-77363134 MS.gene25036:intron 35.0%
TATGAATGCAGCATACTTAC+CGG - chr8.1:77363919-77363938 MS.gene25036:intron 35.0%
TGGAAAAATCAAGTTTCCTC+AGG - chr8.1:77363416-77363435 MS.gene25036:intron 35.0%
TGGTTGTATTGTTTGCACTA+GGG - chr8.1:77363827-77363846 MS.gene25036:CDS 35.0%
TTGGTTGTATTGTTTGCACT+AGG - chr8.1:77363826-77363845 MS.gene25036:CDS 35.0%
! TTGTTTTCCAAAACAGACCT+CGG + chr8.1:77364839-77364858 None:intergenic 35.0%
!! AAATCGGTTTGTCTTCCAAT+GGG + chr8.1:77363631-77363650 None:intergenic 35.0%
!! TTAGCTTGTTCTGTGATCAT+TGG - chr8.1:77362552-77362571 MS.gene25036:CDS 35.0%
AACAAAACTTACGCCACTCA+AGG + chr8.1:77362919-77362938 None:intergenic 40.0%
ACCCAAAAAACCGCTAAAAG+AGG + chr8.1:77364342-77364361 None:intergenic 40.0%
AGAAGACTTGAAAAGGGTTG+AGG - chr8.1:77364874-77364893 MS.gene25036:intron 40.0%
AGCTTATGAACACCTACAAC+GGG + chr8.1:77364457-77364476 None:intergenic 40.0%
AGGCAAATGCAAGAGTGATA+TGG + chr8.1:77364322-77364341 None:intergenic 40.0%
ATCCAATGTGGTCTGTATCA+AGG - chr8.1:77363730-77363749 MS.gene25036:intron 40.0%
ATGAATGCAGCATACTTACC+GGG - chr8.1:77363920-77363939 MS.gene25036:intron 40.0%
CACAGGAGAAGACTTGAAAA+GGG - chr8.1:77364868-77364887 MS.gene25036:intron 40.0%
CACATTGGATTCCAACTTTC+AGG + chr8.1:77363720-77363739 None:intergenic 40.0%
CAGCTTATGAACACCTACAA+CGG + chr8.1:77364458-77364477 None:intergenic 40.0%
CTACAGTGTGTACTTCACAA+AGG - chr8.1:77362754-77362773 MS.gene25036:intron 40.0%
CTGAAAGTTGGAATCCAATG+TGG - chr8.1:77363718-77363737 MS.gene25036:intron 40.0%
CTGATTCCAGGAGGTTTATA+AGG + chr8.1:77363447-77363466 None:intergenic 40.0%
CTGGTTTCTTCCATCTCATA+TGG - chr8.1:77364000-77364019 MS.gene25036:intron 40.0%
CTTATAAACCTCCTGGAATC+AGG - chr8.1:77363445-77363464 MS.gene25036:intron 40.0%
GAAAACAAGGATTTCCAACC+TGG - chr8.1:77364921-77364940 MS.gene25036:intron 40.0%
GAAAACAATGTAGAGTCCAC+AGG - chr8.1:77364851-77364870 MS.gene25036:intron 40.0%
GAAGACTTGAAAAGGGTTGA+GGG - chr8.1:77364875-77364894 MS.gene25036:intron 40.0%
GAGACATTGCTCAATGTTGA+TGG + chr8.1:77364663-77364682 None:intergenic 40.0%
GGCAAATGCAAGAGTGATAT+GGG + chr8.1:77364321-77364340 None:intergenic 40.0%
GTAAAACCCATATGACCAAC+TGG - chr8.1:77363041-77363060 MS.gene25036:intron 40.0%
GTAGCATGACAACACCTAAT+GGG - chr8.1:77363549-77363568 MS.gene25036:intron 40.0%
GTATTGTTTGCACTAGGGAA+TGG - chr8.1:77363832-77363851 MS.gene25036:CDS 40.0%
GTTTCAGCTGTATTGTGTGT+TGG - chr8.1:77363307-77363326 MS.gene25036:intron 40.0%
TACCATGAATGAAAGAAGCC+CGG + chr8.1:77363941-77363960 None:intergenic 40.0%
TCAAGAATGCTGCAACAAGA+AGG + chr8.1:77363473-77363492 None:intergenic 40.0%
TGTAGCATGACAACACCTAA+TGG - chr8.1:77363548-77363567 MS.gene25036:intron 40.0%
TTGCAGTTCATCCTGAAAGT+TGG - chr8.1:77363706-77363725 MS.gene25036:intron 40.0%
! ACAGACTTCTCTTTTGCAGA+TGG - chr8.1:77364535-77364554 MS.gene25036:intron 40.0%
! CTTGCATTTGCCTCTTTTAG+CGG - chr8.1:77364329-77364348 MS.gene25036:intron 40.0%
! GCCTCTTTTAGCGGTTTTTT+GGG - chr8.1:77364338-77364357 MS.gene25036:intron 40.0%
! TAAAAGTCCGAGGTCTGTTT+TGG - chr8.1:77364829-77364848 MS.gene25036:intron 40.0%
! TCAAGGATATCACTTGGTGA+AGG + chr8.1:77362902-77362921 None:intergenic 40.0%
! TGCCTCTTTTAGCGGTTTTT+TGG - chr8.1:77364337-77364356 MS.gene25036:intron 40.0%
!! ATTGCTCAATGTTGATGGTG+CGG + chr8.1:77364658-77364677 None:intergenic 40.0%
!! CAAACCTTACTTTTGCTCTC+AGG - chr8.1:77363075-77363094 MS.gene25036:intron 40.0%
!! CAAATCGGTTTGTCTTCCAA+TGG + chr8.1:77363632-77363651 None:intergenic 40.0%
!!! CTTTTAGCGGTTTTTTGGGT+AGG - chr8.1:77364342-77364361 MS.gene25036:intron 40.0%
!!! GTTTTTTGGGTAGGTTGGTT+GGG - chr8.1:77364351-77364370 MS.gene25036:intron 40.0%
AGAGCCTGAGAGCAAAAGTA+AGG + chr8.1:77363082-77363101 None:intergenic 45.0%
AGTAGTGTTTACACTGCCAG+TGG + chr8.1:77364573-77364592 None:intergenic 45.0%
CACCAAGTGATATCCTTGAG+TGG - chr8.1:77362903-77362922 MS.gene25036:intron 45.0%
CAGTGTGTACTTCACAAAGG+TGG - chr8.1:77362757-77362776 MS.gene25036:intron 45.0%
CCACAGGAGAAGACTTGAAA+AGG - chr8.1:77364867-77364886 MS.gene25036:intron 45.0%
CTGGTCAAGATAAAAGTCCG+AGG - chr8.1:77364819-77364838 MS.gene25036:intron 45.0%
CTTATGAACACCTACAACGG+GGG + chr8.1:77364455-77364474 None:intergenic 45.0%
GAAAAGGGTTGAGGGATTGA+AGG - chr8.1:77364883-77364902 MS.gene25036:intron 45.0%
GACCTTGATACAGACCACAT+TGG + chr8.1:77363735-77363754 None:intergenic 45.0%
GCGAGGAGAAACAGAAAACA+AGG - chr8.1:77364908-77364927 MS.gene25036:intron 45.0%
GCTTATGAACACCTACAACG+GGG + chr8.1:77364456-77364475 None:intergenic 45.0%
GTGCTCTATACTCCTTCTGA+AGG + chr8.1:77362428-77362447 None:intergenic 45.0%
GTTGTACTTCTCCACGTACT+CGG + chr8.1:77364747-77364766 None:intergenic 45.0%
TACCGGGCTTCTTTCATTCA+TGG - chr8.1:77363936-77363955 MS.gene25036:intron 45.0%
TACGTATTGGAAGGAAGCGA+GGG - chr8.1:77363234-77363253 MS.gene25036:intron 45.0%
TGCCATAACAACCCCAAAGA+TGG + chr8.1:77364966-77364985 None:intergenic 45.0%
TTACGTATTGGAAGGAAGCG+AGG - chr8.1:77363233-77363252 MS.gene25036:intron 45.0%
TTCCTGAATGTTGCACTGCA+AGG + chr8.1:77364716-77364735 None:intergenic 45.0%
TTCCTTGCAGTGCAACATTC+AGG - chr8.1:77364711-77364730 MS.gene25036:intron 45.0%
TTGCGACCAGTTGGTCATAT+GGG + chr8.1:77363050-77363069 None:intergenic 45.0%
TTGTACTTCTCCACGTACTC+GGG + chr8.1:77364746-77364765 None:intergenic 45.0%
! GATATCACTTGGTGAAGGAC+GGG + chr8.1:77362897-77362916 None:intergenic 45.0%
! GGATATCACTTGGTGAAGGA+CGG + chr8.1:77362898-77362917 None:intergenic 45.0%
! TTTTGCTAGACGCTGCTTCT+CGG + chr8.1:77364600-77364619 None:intergenic 45.0%
!! CTCCATCTTTGGGGTTGTTA+TGG - chr8.1:77364961-77364980 MS.gene25036:CDS 45.0%
!!! CCTTTTCAAGTCTTCTCCTG+TGG + chr8.1:77364870-77364889 None:intergenic 45.0%
!!! GGTTTTTTGGGTAGGTTGGT+TGG - chr8.1:77364350-77364369 MS.gene25036:intron 45.0%
!!! TAGCGGTTTTTTGGGTAGGT+TGG - chr8.1:77364346-77364365 MS.gene25036:intron 45.0%
ATGCATCAAGCGCCTTCAGA+AGG - chr8.1:77362413-77362432 MS.gene25036:CDS 50.0%
ATGGATACCAGTCCAACCAC+TGG - chr8.1:77364554-77364573 MS.gene25036:intron 50.0%
CGCCACTCAAGGATATCACT+TGG + chr8.1:77362908-77362927 None:intergenic 50.0%
GCATGACAACACCTAATGGG+CGG - chr8.1:77363552-77363571 MS.gene25036:intron 50.0%
GGAGCCAGTTTCCCATATTG+TGG - chr8.1:77362871-77362890 MS.gene25036:intron 50.0%
GTGTTTACACTGCCAGTGGT+TGG + chr8.1:77364569-77364588 None:intergenic 50.0%
GTTGCGACCAGTTGGTCATA+TGG + chr8.1:77363051-77363070 None:intergenic 50.0%
TGAAGGACGGGCCACAATAT+GGG + chr8.1:77362885-77362904 None:intergenic 50.0%
TGTACTTCTCCACGTACTCG+GGG + chr8.1:77364745-77364764 None:intergenic 50.0%
TGTGTCATGAACCGCCCATT+AGG + chr8.1:77363566-77363585 None:intergenic 50.0%
TTGAGGGATTGAAGGATGCG+AGG - chr8.1:77364891-77364910 MS.gene25036:intron 50.0%
TTGTTAAGCTCCCCCGTTGT+AGG - chr8.1:77364442-77364461 MS.gene25036:intron 50.0%
! TGACCAGACTCTGATGACGT+TGG + chr8.1:77364806-77364825 None:intergenic 50.0%
!! ACAAGAAGGCACCTGATTCC+AGG + chr8.1:77363459-77363478 None:intergenic 50.0%
!! TTGGGTAGGTTGGTTGGGAT+GGG - chr8.1:77364356-77364375 MS.gene25036:intron 50.0%
!! TTTGGGTAGGTTGGTTGGGA+TGG - chr8.1:77364355-77364374 MS.gene25036:intron 50.0%
AGCGAGGGAACACCTTTCTC+AGG - chr8.1:77363249-77363268 MS.gene25036:intron 55.0%
CAGCCAACGTCATCAGAGTC+TGG - chr8.1:77364800-77364819 MS.gene25036:intron 55.0%
CGGGCCACAATATGGGAAAC+TGG + chr8.1:77362878-77362897 None:intergenic 55.0%
GAAGATGTTCCCCGAGTACG+TGG - chr8.1:77364733-77364752 MS.gene25036:intron 55.0%
GTGAAGGACGGGCCACAATA+TGG + chr8.1:77362886-77362905 None:intergenic 55.0%
TACACTGCCAGTGGTTGGAC+TGG + chr8.1:77364564-77364583 None:intergenic 55.0%
TTTGCTGCGTTGCGACCAGT+TGG + chr8.1:77363059-77363078 None:intergenic 55.0%
!! AGAAGGCACCTGATTCCAGG+AGG + chr8.1:77363456-77363475 None:intergenic 55.0%
!! GTAGGTTGGTTGGGATGGGA+GGG - chr8.1:77364360-77364379 MS.gene25036:intron 55.0%
!! TAGGTTGGTTGGGATGGGAG+GGG - chr8.1:77364361-77364380 MS.gene25036:intron 55.0%
!! GGTAGGTTGGTTGGGATGGG+AGG - chr8.1:77364359-77364378 MS.gene25036:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 77362399 77365006 77362399 ID=MS.gene25036
chr8.1 mRNA 77362399 77365006 77362399 ID=MS.gene25036.t1;Parent=MS.gene25036
chr8.1 exon 77364950 77365006 77364950 ID=MS.gene25036.t1.exon1;Parent=MS.gene25036.t1
chr8.1 CDS 77364950 77365006 77364950 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
chr8.1 exon 77364479 77364533 77364479 ID=MS.gene25036.t1.exon2;Parent=MS.gene25036.t1
chr8.1 CDS 77364479 77364533 77364479 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
chr8.1 exon 77364135 77364173 77364135 ID=MS.gene25036.t1.exon3;Parent=MS.gene25036.t1
chr8.1 CDS 77364135 77364173 77364135 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
chr8.1 exon 77363939 77364002 77363939 ID=MS.gene25036.t1.exon4;Parent=MS.gene25036.t1
chr8.1 CDS 77363939 77364002 77363939 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
chr8.1 exon 77363791 77363852 77363791 ID=MS.gene25036.t1.exon5;Parent=MS.gene25036.t1
chr8.1 CDS 77363791 77363852 77363791 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
chr8.1 exon 77363654 77363693 77363654 ID=MS.gene25036.t1.exon6;Parent=MS.gene25036.t1
chr8.1 CDS 77363654 77363693 77363654 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
chr8.1 exon 77363448 77363475 77363448 ID=MS.gene25036.t1.exon7;Parent=MS.gene25036.t1
chr8.1 CDS 77363448 77363475 77363448 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
chr8.1 exon 77362760 77362851 77362760 ID=MS.gene25036.t1.exon8;Parent=MS.gene25036.t1
chr8.1 CDS 77362760 77362851 77362760 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
chr8.1 exon 77362399 77362684 77362399 ID=MS.gene25036.t1.exon9;Parent=MS.gene25036.t1
chr8.1 CDS 77362399 77362684 77362399 ID=cds.MS.gene25036.t1;Parent=MS.gene25036.t1
Gene Sequence

>MS.gene25036

ATGGCGGAGAAAGCATGCATCAAGCGCCTTCAGAAGGAGTATAGAGCACTTTGTAAAGTAAGTGCATAATTTTTACGTTTCCGACAAAAATTGCTCTTCACTATTTATTTTTATTTATGGTTCCAATGCTTATTTTGTTGTGCAGCTATATAGTTAGCTTGTTCTGTGATCATTGGTTTGTCTCCTCTCTATTCTTGTGTATTTATGTATCTGGGCTTAGTATTTTGATGTTGTTTGTGGCCGATGAAATGTTTATAGCATGAATGACTGGGAACACATCATCCTATATATGTTTCCTTTCTCCTCTTAATAGTGTGTCTATAGTTTCTGAATAATTGTTTCATGATTGGTTAGGCTACAGTGTGTACTTCACAAAGGTGGATTGTTTCAGCCTGTATCAATTGCCTAGATCATCATAATATTTGAAGATTATGTCAACTCGATAATGCTTAATTTTATTACTGTATTTGCAGGAGCCAGTTTCCCATATTGTGGCCCGTCCTTCACCAAGTGATATCCTTGAGTGGCGTAAGTTTTGTTTCATACTGTCACATTTCATATATGATTTTATGACAAGCTCTAATATCCAAAAATGGGAAAACAGAATATGTTGAATCTTTGGTACATGTAATCATAAACGATGTAAAACCCATATGACCAACTGGTCGCAACGCAGCAAACCTTACTTTTGCTCTCAGGCTCTTTTTCCTTAATACTACTATATTGTCAGCAAGGAAGGATCAAAATATTGTATTGTCAGCAACTTATTGTAATTTATTTGTTAGCTAGTGGTTGATACTTGATGCTGATCTTATTATGTGTTCATATCTCAGATTACGTATTGGAAGGAAGCGAGGGAACACCTTTCTCAGGTTTAGCAAATTATGATTGTTGCAGATTGATATTTTGTTTCAGCTGTATTGTGTGTTGGTTTTGCAGTTCCAACACCCAGTTTATTAATATCTCAACTTATATTGTGTTTACGTTTTTTGTTCGCTTTTTAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCAGGAATATCCTTATAAACCTCCTGGAATCAGGTGCCTTCTTGTTGCAGCATTCTTGATCATTCGAATTTTCATGTATTTGATCTTTAATAACCAAGTTCGTACTTTTTATAATGTAGCATGACAACACCTAATGGGCGGTTCATGACACAGAAAAAGATCTGTTTATCAATGAGCGATTGTAAGTTCTTTTACCCATTGGAAGACAAACCGATTTGTATCATAGTTACCCATATTGCTACAGTTTAATTTTTCTGTGGGGTTTTCTGTTTTTGCAGTTCATCCTGAAAGTTGGAATCCAATGTGGTCTGTATCAAGGTCAGTATGTTCAAGTTTTGAAGTTCTTTTATGTGGTTTACTCCCTTTTATGTTTTAATTTTTTCTTTTGAAATTTGGTTGTATTGTTTGCACTAGGGAATGGTATATGACTATATATGTGTTCATTATTATTTCGTAGTTTCATACTAATAATGATGTTTCCAATTTATGAATGCAGCATACTTACCGGGCTTCTTTCATTCATGGTATGTTATTATGTTATGGTTTCTTCATATTCTAATTGAACTCTGGTTTCTTCCATCTCATATGGCATTTGTTTGCTCATAAGATATTGGGCATGTTTGTTGCAGATTATAGAATAAATAATTTTGAGATTTTAAAAAAAGCAGAAGTTATTTTACGTTTGTTTACCATAAGGAAAATCACTCTTTTTGAGATAAAAAACCATCAATAATGATTTCAAAGAGAAACTACTCAAAACAACTTCTTGTTTAAAACATCTTTTAGATTTTTTTTTTAGATTCTCATTTGTTTAAGAATATGTAATAAATGAATAAAAATTCCTAAAATTGTTGTTCCGAAAAGGGTTTTTCATAAAAAAATGGCCCATATCACTCTTGCATTTGCCTCTTTTAGCGGTTTTTTGGGTAGGTTGGTTGGGATGGGAGGGGATCTCAAGTTTGAGTAGCCATAATAATGGCTTAACAAAAGCTAATACAACTTTCAAACTTGTTAAGCTCCCCCGTTGTAGGTGTTCATAAGCTGTTGAGCCATTTAATATAAAGGAAAATGTTATCAGCTTGTTATTCTTCACGATGTATGACAGACTTCTCTTTTGCAGATGGATACCAGTCCAACCACTGGCAGTGTAAACACTACTACTGCCGAGAAGCAGCGTCTAGCAAAATCTTCAATGTCTTTCAATTGTAAGAAGTAAGTATACCGCACCATCAACATTGAGCAATGTCTCTGATTTGTGTTCCACAATTAATGGCTCTTTCCTTGCAGTGCAACATTCAGGAAGATGTTCCCCGAGTACGTGGAGAAGTACAACAAGCAGCAGCTTTCTGAGCAAGTTACTTCTGAGCAGCCAACGTCATCAGAGTCTGGTCAAGATAAAAGTCCGAGGTCTGTTTTGGAAAACAATGTAGAGTCCACAGGAGAAGACTTGAAAAGGGTTGAGGGATTGAAGGATGCGAGGAGAAACAGAAAACAAGGATTTCCAACCTGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTTATGGCATTACCTCTACTCCAGCTGTGA

Protein sequence

>MS.gene25036.t1

MAEKACIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFSGGYYYGKIKFPQEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTAEKQRLAKSSMSFNCKNATFRKMFPEYVEKYNKQQLSEQVTSEQPTSSESGQDKSPRSVLENNVESTGEDLKRVEGLKDARRNRKQGFPTWMMLLLFSIFGVVMALPLLQL