AlfalfaGEDB | MS.gene25137

M. sativa cultivar XinJiangDaYe / MS.gene25137

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25137.t1	XP_003627277.1	95.2	209	10	0	1	209	1	209	2.50E-106	394.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25137.t1	Q9ZRA4	58.5	207	84	2	3	207	1	207	3.5e-61	236.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25137.t1	G7L6U9	95.2	209	10	0	1	209	1	209	1.8e-106	394.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050381	MS.gene25137	0.810739	9.93E-51	-1.69E-46
MS.gene050809	MS.gene25137	0.803287	3.75E-49	-1.69E-46
MS.gene050868	MS.gene25137	-0.803593	3.24E-49	-1.69E-46
MS.gene050871	MS.gene25137	-0.804927	1.71E-49	-1.69E-46
MS.gene052164	MS.gene25137	-0.802343	5.87E-49	-1.69E-46
MS.gene052823	MS.gene25137	-0.802141	6.46E-49	-1.69E-46
MS.gene052825	MS.gene25137	-0.804393	2.21E-49	-1.69E-46
MS.gene053824	MS.gene25137	-0.801587	8.39E-49	-1.69E-46
MS.gene054706	MS.gene25137	0.823592	1.27E-53	-1.69E-46
MS.gene054742	MS.gene25137	0.801416	9.10E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25137.t1	MTR_8g020630	95.215	209	10	0	1	209	1	209	6.42e-145	402
MS.gene25137.t1	MTR_8g020650	94.737	209	11	0	1	209	1	209	2.97e-137	382
MS.gene25137.t1	MTR_8g020670	88.517	209	24	0	1	209	1	209	6.21e-134	374
MS.gene25137.t1	MTR_2g044040	73.684	209	55	0	1	209	1	209	2.27e-111	317
MS.gene25137.t1	MTR_0284s0010	73.684	209	55	0	1	209	1	209	4.09e-109	311
MS.gene25137.t1	MTR_2g045100	70.813	209	61	0	1	209	1	209	8.04e-107	306
MS.gene25137.t1	MTR_2g036120	70.531	207	61	0	1	207	1	207	1.93e-105	302
MS.gene25137.t1	MTR_3g019710	70.335	209	62	0	1	209	1	209	2.17e-104	300
MS.gene25137.t1	MTR_5g031460	68.421	209	66	0	1	209	1	209	6.37e-101	291
MS.gene25137.t1	MTR_3g019650	68.421	209	65	1	1	209	1	208	3.14e-99	286

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25137.t1	AT1G72610	60.622	193	74	2	19	209	16	208	2.43e-77	231
MS.gene25137.t1	AT5G20630	55.981	209	90	2	1	207	1	209	4.17e-76	228
MS.gene25137.t1	AT5G39160	40.206	194	106	4	20	206	26	216	4.69e-40	136
MS.gene25137.t1	AT5G39190	40.816	196	106	5	20	206	26	220	8.96e-40	135
MS.gene25137.t1	AT5G39160	40.306	196	107	5	20	206	26	220	3.45e-39	134
MS.gene25137.t1	AT3G04200	39.378	193	109	5	22	206	31	223	4.89e-39	134
MS.gene25137.t1	AT5G26700	37.198	207	126	4	5	208	7	212	5.50e-39	134
MS.gene25137.t1	AT3G05950	41.451	193	103	5	22	205	30	221	7.20e-39	134
MS.gene25137.t1	AT5G39130	40.816	196	106	5	20	206	26	220	7.65e-39	133
MS.gene25137.t1	AT1G09560	40.957	188	107	3	22	205	28	215	4.41e-38	131

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Find 43 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGTGACGAATGCGG+AGG	0.711598	8.4:+72922772	None:intergenic
AAAATCATTGACAGAAGCTT+GGG	0.456575	8.4:+72922931	None:intergenic
AAGAAGCTAAAGACACGTTT+TGG	0.428168	8.4:-72922389	MS.gene25137:CDS
AAGGCTCCAGATACTCCTTC+AGG	0.435016	8.4:-72922893	MS.gene25137:CDS
AGATCAAGTAATTGAGCACC+AGG	0.524185	8.4:+72922482	None:intergenic
ATCAATAATTCAGTAGCACC+GGG	0.596504	8.4:+72922671	None:intergenic
ATCTTAGAATAAACCGCGGT+AGG	0.612903	8.4:+72922611	None:intergenic
ATTCCAAGTCCGTTAAGGCC+TGG	0.517650	8.4:+72922749	None:intergenic
ATTCCAATGCATACTCATCC+CGG	0.573458	8.4:-72922689	MS.gene25137:CDS
ATTGACAGAAGCTTGGGAAG+TGG	0.571601	8.4:+72922937	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCATTGACAGAAGCT+TGG	+	chr8.4:72922432-72922451	None:intergenic	30.0%
AAAATCATTGACAGAAGCTT+GGG	+	chr8.4:72922431-72922450	None:intergenic	30.0%
TAATTTACCTTCTGAATTGG+TGG	-	chr8.4:72922915-72922934	MS.gene25137:CDS	30.0%
TATCAATAATTCAGTAGCAC+CGG	+	chr8.4:72922692-72922711	None:intergenic	30.0%
ATCAATAATTCAGTAGCACC+GGG	+	chr8.4:72922691-72922710	None:intergenic	35.0%
CAACATCTTAGAATAAACCG+CGG	+	chr8.4:72922755-72922774	None:intergenic	35.0%
GTCTGATGTGATATTTGCAA+GGG	+	chr8.4:72922506-72922525	None:intergenic	35.0%
TCTGATGTGATATTTGCAAG+GGG	+	chr8.4:72922505-72922524	None:intergenic	35.0%
AGATCAAGTAATTGAGCACC+AGG	+	chr8.4:72922880-72922899	None:intergenic	40.0%
ATCTTAGAATAAACCGCGGT+AGG	+	chr8.4:72922751-72922770	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	72922376	72923005	72922376	ID=MS.gene25137
chr8.4	mRNA	72922376	72923005	72922376	ID=MS.gene25137.t1;Parent=MS.gene25137
chr8.4	exon	72922376	72923005	72922376	ID=MS.gene25137.t1.exon1;Parent=MS.gene25137.t1
chr8.4	CDS	72922376	72923005	72922376	ID=cds.MS.gene25137.t1;Parent=MS.gene25137.t1

Gene Sequence

>MS.gene25137

ATGAAGATTATTCACATAGTTTTTCTTTTCACTATTCTTTTGTTCACCACTTCCCAAGCTTCTGTCAATGATTTTTGTGTAGCAAATTTAAAGGCTCCAGATACTCCTTCAGGCTATCACTGCAAACCCCTTGCAAATATCACATCAGACGATTTTGTCTTTCATGGTTTCGTAGCCGGAAACACCAACAACTCTTTCAATGCTGCACTTACCTCCGCATTCGTCACTGATTTTCCAGGCCTTAACGGACTTGGAATCTCCGCAGCGCGGTTAGACATAGCGGAAGGTGGTTCAATTCCAATGCATACTCATCCCGGTGCTACTGAATTATTGATAATAGTTCAAGGTGAAATAACTGCTGGATTTCTGACACCTACCGCGGTTTATTCTAAGATGTTGAAACCGGGCGATCTTATGGTTTTTCCACAAGGGATGTTGCATTTTCAAATTAACACTGGTAAGGGAAAAGCTACTGCTTTTCTTACTTTTAGTAGTGCTAACCCTGGTGCTCAATTACTTGATCTTCTTTTGTTTTCCAATAATTTACCTTCTGAATTGGTGGCACAAACTACTTTCCTTGATCTTGCACAAGTGAAGAAGCTAAAGACACGTTTTGGTGGAAGAGGGTAG

Protein sequence

>MS.gene25137.t1

MKIIHIVFLFTILLFTTSQASVNDFCVANLKAPDTPSGYHCKPLANITSDDFVFHGFVAGNTNNSFNAALTSAFVTDFPGLNGLGISAARLDIAEGGSIPMHTHPGATELLIIVQGEITAGFLTPTAVYSKMLKPGDLMVFPQGMLHFQINTGKGKATAFLTFSSANPGAQLLDLLLFSNNLPSELVAQTTFLDLAQVKKLKTRFGGRG