AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25198


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25198.t1 MTR_1g032200 88.473 347 39 1 1 347 60 405 0.0 599
MS.gene25198.t1 MTR_1g032200 88.473 347 39 1 1 347 1 346 0.0 599
MS.gene25198.t1 MTR_5g025880 87.353 340 41 2 1 339 60 398 0.0 538
MS.gene25198.t1 MTR_1g090530 72.294 231 29 2 43 273 19 214 5.17e-111 322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25198.t1 AT5G63830 54.391 353 145 5 1 347 64 406 3.14e-123 360

Find 93 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATCAGCCATGGAATTTC+AGG 0.185152 1.3:+17189249 MS.gene25198:CDS
TCATTCTTCTTCAACTTTCT+TGG 0.196072 1.3:-17189112 None:intergenic
CAACTAGGTGAACAGTTAAA+AGG 0.224295 1.3:-17188763 None:intergenic
GTTCATTAGGTTGCATTTGC+TGG 0.232839 1.3:-17186580 None:intergenic
TGTTATCAGTCTACTTTCAT+TGG 0.309270 1.3:+17189009 MS.gene25198:CDS
CAGGAACCGGTAGATGAAAT+TGG 0.320976 1.3:+17188656 MS.gene25198:CDS
ATGACCAGCCAGAGGAAGTT+TGG 0.352244 1.3:+17189194 MS.gene25198:CDS
AACTAGGTGAACAGTTAAAA+GGG 0.384089 1.3:-17188762 None:intergenic
ATTTCATTCAGAAGAGGAAA+TGG 0.384308 1.3:+17186637 MS.gene25198:CDS
GGAATTTCAGGGTAGCAATA+AGG 0.390666 1.3:+17189261 MS.gene25198:CDS
AGAGGAGGTAGCGGAACTTC+AGG 0.391556 1.3:-17188710 None:intergenic
GATATATTTCATCATGTGTT+GGG 0.412935 1.3:+17189168 MS.gene25198:CDS
ACCTCTTTCAAAGCAGGAAC+CGG 0.420320 1.3:+17188643 MS.gene25198:CDS
TCTTTAGCAGCCATTGTAAC+GGG 0.442868 1.3:+17189220 MS.gene25198:CDS
GAGGAGGTAGCGGAACTTCA+GGG 0.451045 1.3:-17188709 None:intergenic
CGTTACAATGGCTGCTAAAG+AGG 0.452467 1.3:-17189218 None:intergenic
GTTATCAGTCTACTTTCATT+GGG 0.454234 1.3:+17189010 MS.gene25198:CDS
TAAAAGGGGTGACGGTTCCT+TGG 0.459185 1.3:-17188747 None:intergenic
GTTGAGTGTGTCCTCAGTGT+TGG 0.464931 1.3:+17188868 MS.gene25198:CDS
AGGGCTTCCAGTACAGTCTC+TGG 0.477548 1.3:-17188905 None:intergenic
TTGAGTGTGTCCTCAGTGTT+GGG 0.478818 1.3:+17188869 MS.gene25198:CDS
TGTTCAACCTCTTTCAAAGC+AGG 0.484187 1.3:+17188637 MS.gene25198:CDS
TTACTTCCAATTTCATCTAC+CGG 0.486431 1.3:-17188662 None:intergenic
AGATATATTTCATCATGTGT+TGG 0.495468 1.3:+17189167 MS.gene25198:CDS
ACCGGTTCCTGCTTTGAAAG+AGG 0.496464 1.3:-17188644 None:intergenic
TTCGCCTCTACAATGGTGAT+TGG 0.497161 1.3:+17188813 MS.gene25198:CDS
AAAGAGGACCAAACTTCCTC+TGG 0.497868 1.3:-17189202 None:intergenic
CAACCGACGCAAGTCGCAAA+GGG 0.505392 1.3:-17189053 None:intergenic
TTCATTGGGAAGTCCTGCTA+TGG 0.507704 1.3:+17189024 MS.gene25198:CDS
CTCTCCAGCTTACAAACACA+TGG 0.512546 1.3:+17188952 MS.gene25198:CDS
AAGAGGCAAATGTTTGATTG+AGG 0.516851 1.3:+17189312 MS.gene25198:CDS
AGAAGAGGAAATGGATAGCA+TGG 0.518113 1.3:+17186646 MS.gene25198:CDS
CAAAGGGCACACACCATAGC+AGG 0.519183 1.3:-17189037 None:intergenic
TTTCACAGAGCTATTGCTAC+TGG 0.519314 1.3:+17188524 MS.gene25198:CDS
CCTCACTCATTGCTTGGAGC+AGG 0.521640 1.3:+17188925 MS.gene25198:CDS
GGAAGCCCTCACTCATTGCT+TGG 0.522054 1.3:+17188919 MS.gene25198:CDS
CTCTTTAGCAGCCATTGTAA+CGG 0.523197 1.3:+17189219 MS.gene25198:CDS
GCCTCTACAATGGTGATTGG+AGG 0.527545 1.3:+17188816 MS.gene25198:CDS
CCTCAGTGTTGGGTCACGGT+GGG 0.529875 1.3:+17188879 MS.gene25198:CDS
GAAGAGATTTCATTCAGAAG+AGG 0.535233 1.3:+17186631 MS.gene25198:CDS
GATTAGAAGTAGTATTAAGC+AGG 0.541049 1.3:+17189135 MS.gene25198:CDS
AGCTTACTCAGAGGAGGTAG+CGG 0.543280 1.3:-17188719 None:intergenic
TGATCACACCATGGGATCCA+TGG 0.543972 1.3:+17188561 MS.gene25198:CDS
GGAAATGGATAGCATGGATG+AGG 0.544636 1.3:+17186652 MS.gene25198:CDS
AGGACCAAACTTCCTCTGGC+TGG 0.545689 1.3:-17189198 None:intergenic
ACAACCATGGCTGACCCTAT+CGG 0.555107 1.3:-17188845 None:intergenic
ACATCAGCCATGGAATTTCA+GGG 0.556707 1.3:+17189250 MS.gene25198:CDS
GGGCCGAGAGGAATTTCACT+TGG 0.558432 1.3:-17188689 None:intergenic
GTGTCCTCAGTGTTGGGTCA+CGG 0.559629 1.3:+17188875 MS.gene25198:CDS
AAAATCCGTCTCAGTAAGGA+AGG 0.559950 1.3:+17188605 MS.gene25198:CDS
GAGTTCCTTCCTTACTGAGA+CGG 0.560318 1.3:-17188610 None:intergenic
ATTGCTACCCTGAAATTCCA+TGG 0.560925 1.3:-17189257 None:intergenic
GTAGTATTAAGCAGGCAGAA+AGG 0.563955 1.3:+17189143 MS.gene25198:CDS
TCAACCGACGCAAGTCGCAA+AGG 0.565113 1.3:-17189054 None:intergenic
TTGCGTCGGTTGATTCAAGA+AGG 0.565624 1.3:+17189064 MS.gene25198:CDS
AGCTTTGTCCGAGGAGACGA+TGG 0.565958 1.3:+17188312 MS.gene25198:CDS
AACAATAAAGCAGAATCAAG+AGG 0.565977 1.3:+17189295 MS.gene25198:CDS
TGGGCAGCCAGAGACTGTAC+TGG 0.572805 1.3:+17188898 MS.gene25198:CDS
TCTGAGTAAGCTTAGTTCCA+AGG 0.576318 1.3:+17188730 MS.gene25198:CDS
TTCACTCTTCGCCTCTACAA+TGG 0.580947 1.3:+17188806 MS.gene25198:CDS
GTGCCCTTTGCGACTTGCGT+CGG 0.591448 1.3:+17189050 MS.gene25198:CDS
GCAGAATGCTTTGACCACCA+TGG 0.595624 1.3:-17188578 None:intergenic
ATTGGAGGTCAGATCCGATA+GGG 0.609839 1.3:+17188831 MS.gene25198:CDS
GATTGGAGGTCAGATCCGAT+AGG 0.613080 1.3:+17188830 MS.gene25198:CDS
TCCTCAGTGTTGGGTCACGG+TGG 0.617160 1.3:+17188878 MS.gene25198:CDS
CTGCTCCAAGCAATGAGTGA+GGG 0.618835 1.3:-17188924 None:intergenic
ACCTCCAATCACCATTGTAG+AGG 0.624097 1.3:-17188817 None:intergenic
GAACCAAGTGAAATTCCTCT+CGG 0.627401 1.3:+17188686 MS.gene25198:CDS
GAGCAAGATGATCACACCAT+GGG 0.627867 1.3:+17188553 MS.gene25198:CDS
GAACTAAGCTTACTCAGAGG+AGG 0.635073 1.3:-17188725 None:intergenic
TGAACAGTTAAAAGGGGTGA+CGG 0.639161 1.3:-17188755 None:intergenic
GAGGCGAAGAGTGAAGCAGT+AGG 0.639548 1.3:-17188798 None:intergenic
TCCAGCTTACAAACACATGG+GGG 0.640813 1.3:+17188955 MS.gene25198:CDS
GGGACAAAAGACATCAGCCA+TGG 0.643628 1.3:+17189240 MS.gene25198:CDS
TCTCCAGCTTACAAACACAT+GGG 0.644640 1.3:+17188953 MS.gene25198:CDS
CTCCAGCTTACAAACACATG+GGG 0.647609 1.3:+17188954 MS.gene25198:CDS
TGAAGATTCAGCTTTGTCCG+AGG 0.650725 1.3:+17188303 MS.gene25198:CDS
CCAGCTTACAAACACATGGG+GGG 0.654030 1.3:+17188956 MS.gene25198:CDS
ACTAGGTGAACAGTTAAAAG+GGG 0.655501 1.3:-17188761 None:intergenic
TTTGACCACCATGGATCCCA+TGG 0.656067 1.3:-17188569 None:intergenic
CAGCTTACAAACACATGGGG+GGG 0.657868 1.3:+17188957 MS.gene25198:CDS
AGGAGTATAATATATCAACT+AGG 0.659318 1.3:-17188778 None:intergenic
AGATCCGATAGGGTCAGCCA+TGG 0.668328 1.3:+17188841 MS.gene25198:CDS
CCTGCTCCAAGCAATGAGTG+AGG 0.668912 1.3:-17188925 None:intergenic
TGAGCAAGATGATCACACCA+TGG 0.669134 1.3:+17188552 MS.gene25198:CDS
GGACACACTCAACACAACCA+TGG 0.681189 1.3:-17188858 None:intergenic
AGCGGAACTTCAGGGCCGAG+AGG 0.688421 1.3:-17188701 None:intergenic
TTGGGTTCATGACCAGCCAG+AGG 0.689050 1.3:+17189186 MS.gene25198:CDS
GTTGATTCAAGAAGGAGACA+AGG 0.690629 1.3:+17189072 MS.gene25198:CDS
TTGGAACTAAGCTTACTCAG+AGG 0.719107 1.3:-17188728 None:intergenic
GATTCAAGAAGGAGACAAGG+AGG 0.728271 1.3:+17189075 MS.gene25198:CDS
TCACACCATGGGATCCATGG+TGG 0.731581 1.3:+17188564 MS.gene25198:CDS
CCCACCGTGACCCAACACTG+AGG 0.760863 1.3:-17188879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATTATTGAAAATAATAAA+AGG - chr1.3:17187690-17187709 None:intergenic 10.0%
!! TCATTAATAATAACTTATTA+AGG - chr1.3:17187283-17187302 None:intergenic 10.0%
!!! CTTTTATTATTTTCAATAAT+AGG + chr1.3:17187688-17187707 MS.gene25198:intron 10.0%
!! TATTATTGGATTTACATATT+TGG - chr1.3:17187084-17187103 None:intergenic 15.0%
!!! AGTTATTATTAATGAAGTTT+TGG + chr1.3:17187288-17187307 MS.gene25198:intron 15.0%
!!! TATTATTTTCAATAATAGGT+TGG + chr1.3:17187692-17187711 MS.gene25198:intron 15.0%
!! ATAAAGGATATGTATTCAAT+AGG - chr1.3:17188360-17188379 None:intergenic 20.0%
!! CTAATTATACCAATAAAGAA+GGG + chr1.3:17188246-17188265 MS.gene25198:intron 20.0%
!! TAAAATAAAAAGCAAACTGA+TGG - chr1.3:17187936-17187955 None:intergenic 20.0%
!! TCTAATTATACCAATAAAGA+AGG + chr1.3:17188245-17188264 MS.gene25198:intron 20.0%
!!! CAAGTTAATTTTTTAGAAGA+TGG + chr1.3:17188029-17188048 MS.gene25198:intron 20.0%
!!! GTAAAACAGATTTTTATCTA+TGG + chr1.3:17188418-17188437 MS.gene25198:intron 20.0%
!!! TAGATAAAAATCTGTTTTAC+TGG - chr1.3:17188418-17188437 None:intergenic 20.0%
!!! TCCAATAATAACTTTTAATG+TGG + chr1.3:17187094-17187113 MS.gene25198:intron 20.0%
!!! TGTATTTTTTTTCTTTCTCA+AGG + chr1.3:17186789-17186808 MS.gene25198:intron 20.0%
!!! TTTTATTTTCATTTCACTAC+AGG + chr1.3:17188455-17188474 MS.gene25198:intron 20.0%
! AATAAAAGGGAATCTATGAA+AGG - chr1.3:17187676-17187695 None:intergenic 25.0%
! AATTTAGTACCCTTCTTTAT+TGG - chr1.3:17188258-17188277 None:intergenic 25.0%
! ACAAACCAAACAAAAAATGT+TGG + chr1.3:17186601-17186620 MS.gene25198:CDS 25.0%
! ACTTAACAATGTATGAACAA+CGG + chr1.3:17187368-17187387 MS.gene25198:intron 25.0%
! AGATATATTTCATCATGTGT+TGG + chr1.3:17189167-17189186 MS.gene25198:CDS 25.0%
! ATAAAAGGGAATCTATGAAA+GGG - chr1.3:17187675-17187694 None:intergenic 25.0%
! CAAAATTCACAATGAAAATG+TGG + chr1.3:17187224-17187243 MS.gene25198:intron 25.0%
! CAAATATTTCACTGAAATTC+AGG - chr1.3:17186944-17186963 None:intergenic 25.0%
! GATATATTTCATCATGTGTT+GGG + chr1.3:17189168-17189187 MS.gene25198:CDS 25.0%
! GCCACATTAAAAGTTATTAT+TGG - chr1.3:17187098-17187117 None:intergenic 25.0%
! TTTGATATTTCATGCTTCTT+TGG - chr1.3:17187208-17187227 None:intergenic 25.0%
!! AACAGATTTTTATCTATGGT+TGG + chr1.3:17188422-17188441 MS.gene25198:intron 25.0%
!! ACAGATTTTTATCTATGGTT+GGG + chr1.3:17188423-17188442 MS.gene25198:intron 25.0%
!! AGGAGTATAATATATCAACT+AGG - chr1.3:17188781-17188800 None:intergenic 25.0%
!! ATAAAAATCTGTTTTACTGG+TGG - chr1.3:17188415-17188434 None:intergenic 25.0%
!! TGTTTTGTGTTTGATTATGT+TGG + chr1.3:17188192-17188211 MS.gene25198:intron 25.0%
!!! TATGTCCAACATTTTTTGTT+TGG - chr1.3:17186609-17186628 None:intergenic 25.0%
!!! TTTGCTTTTGCTATTTGTTA+CGG + chr1.3:17187978-17187997 MS.gene25198:intron 25.0%
!!! TTTTGTTTGGTTTGTTCATT+AGG - chr1.3:17186596-17186615 None:intergenic 25.0%
AACAATAAAGCAGAATCAAG+AGG + chr1.3:17189295-17189314 MS.gene25198:CDS 30.0%
AACATGAGAATAGAACATTG+TGG + chr1.3:17187118-17187137 MS.gene25198:intron 30.0%
AACTAGGTGAACAGTTAAAA+GGG - chr1.3:17188765-17188784 None:intergenic 30.0%
AATGAGTCTGACTATTAGAA+TGG - chr1.3:17187839-17187858 None:intergenic 30.0%
ACAAAGTCACAAACATTTAG+TGG - chr1.3:17188006-17188025 None:intergenic 30.0%
ACATGAGAATAGAACATTGT+GGG + chr1.3:17187119-17187138 MS.gene25198:intron 30.0%
ACGATGGAAAAAATAATGTC+AGG + chr1.3:17188328-17188347 MS.gene25198:CDS 30.0%
ACTGTCATTCAAATTAATCC+AGG + chr1.3:17187028-17187047 MS.gene25198:intron 30.0%
AGTTCGTTATTCAATGTGTT+GGG + chr1.3:17186907-17186926 MS.gene25198:intron 30.0%
ATATCCCCTAATGAATAAGA+TGG + chr1.3:17187727-17187746 MS.gene25198:intron 30.0%
ATTTCATTCAGAAGAGGAAA+TGG + chr1.3:17186637-17186656 MS.gene25198:CDS 30.0%
ATTTGACTAAACCTCCAAAT+CGG + chr1.3:17186959-17186978 MS.gene25198:intron 30.0%
CTAATGTAGTAAATGTCAAG+TGG + chr1.3:17187865-17187884 MS.gene25198:intron 30.0%
GATTAGAAGTAGTATTAAGC+AGG + chr1.3:17189135-17189154 MS.gene25198:CDS 30.0%
GCAGAGCTATAAGTTATTAT+TGG - chr1.3:17187145-17187164 None:intergenic 30.0%
GGCGTCATTATCATAATTAT+CGG - chr1.3:17187518-17187537 None:intergenic 30.0%
GTAACCCATCTTATTCATTA+GGG - chr1.3:17187735-17187754 None:intergenic 30.0%
GTTAAATGATCAACAATGCT+AGG - chr1.3:17188125-17188144 None:intergenic 30.0%
GTTATCAGTCTACTTTCATT+GGG + chr1.3:17189010-17189029 MS.gene25198:CDS 30.0%
GTTCCTGGATTTACATATTT+GGG - chr1.3:17187176-17187195 None:intergenic 30.0%
TAACCCATCTTATTCATTAG+GGG - chr1.3:17187734-17187753 None:intergenic 30.0%
TATCCCCTAATGAATAAGAT+GGG + chr1.3:17187728-17187747 MS.gene25198:intron 30.0%
TCATTCTTCTTCAACTTTCT+TGG - chr1.3:17189115-17189134 None:intergenic 30.0%
TCTTTGCATGTGAGTTTATT+TGG + chr1.3:17186763-17186782 MS.gene25198:intron 30.0%
TGTTATCAGTCTACTTTCAT+TGG + chr1.3:17189009-17189028 MS.gene25198:CDS 30.0%
TGTTCCTGGATTTACATATT+TGG - chr1.3:17187177-17187196 None:intergenic 30.0%
TTACTTCCAATTTCATCTAC+CGG - chr1.3:17188665-17188684 None:intergenic 30.0%
TTAGAAGATACACGCAATAA+AGG - chr1.3:17188376-17188395 None:intergenic 30.0%
! AATAACGAACTCCACATTTT+GGG - chr1.3:17186898-17186917 None:intergenic 30.0%
! CAATGAAGCATTTAGTTTAG+TGG + chr1.3:17188081-17188100 MS.gene25198:intron 30.0%
! TTATGTTGGAAGAGTTTTTG+AGG + chr1.3:17188206-17188225 MS.gene25198:intron 30.0%
!! AGGAAGTTGTATGTTTTTGA+GGG - chr1.3:17186867-17186886 None:intergenic 30.0%
!! TAGGAAGTTGTATGTTTTTG+AGG - chr1.3:17186868-17186887 None:intergenic 30.0%
!!! TTGCTTTTGCTATTTGTTAC+GGG + chr1.3:17187979-17187998 MS.gene25198:intron 30.0%
AAAGCTGAATCTTCAAAAGC+TGG - chr1.3:17188298-17188317 None:intergenic 35.0%
AAGAGGCAAATGTTTGATTG+AGG + chr1.3:17189312-17189331 MS.gene25198:CDS 35.0%
AAGCTGAATCTTCAAAAGCT+GGG - chr1.3:17188297-17188316 None:intergenic 35.0%
ACTAGGTGAACAGTTAAAAG+GGG - chr1.3:17188764-17188783 None:intergenic 35.0%
ATGTAGTAAATGTCAAGTGG+CGG + chr1.3:17187868-17187887 MS.gene25198:intron 35.0%
CAAAAAAATCCGTCTCAGTA+AGG + chr1.3:17188601-17188620 MS.gene25198:CDS 35.0%
CAACTAGGTGAACAGTTAAA+AGG - chr1.3:17188766-17188785 None:intergenic 35.0%
GAAGAGATTTCATTCAGAAG+AGG + chr1.3:17186631-17186650 MS.gene25198:CDS 35.0%
GAGTTCGTTATTCAATGTGT+TGG + chr1.3:17186906-17186925 MS.gene25198:intron 35.0%
GGTAACCCATCTTATTCATT+AGG - chr1.3:17187736-17187755 None:intergenic 35.0%
TCACCCAAATATGTAAATCC+AGG + chr1.3:17187170-17187189 MS.gene25198:intron 35.0%
TCATGTACTCCTATCATACA+CGG + chr1.3:17187467-17187486 MS.gene25198:intron 35.0%
TGTTGCACCACCAATATAAA+AGG + chr1.3:17187905-17187924 MS.gene25198:intron 35.0%
! ATAATAGGTTGGCGAAAATC+TGG + chr1.3:17187703-17187722 MS.gene25198:intron 35.0%
! ATTTCATGCTTCTTTGGAGA+TGG - chr1.3:17187202-17187221 None:intergenic 35.0%
! GAATAACGAACTCCACATTT+TGG - chr1.3:17186899-17186918 None:intergenic 35.0%
! GATGGCAACTCCTTTTATAT+TGG - chr1.3:17187918-17187937 None:intergenic 35.0%
! TTTCATGCTTCTTTGGAGAT+GGG - chr1.3:17187201-17187220 None:intergenic 35.0%
! TTTTTATCTATGGTTGGGTG+AGG + chr1.3:17188428-17188447 MS.gene25198:intron 35.0%
!! ATGTTTTTGAGGGAAAAGCT+AGG - chr1.3:17186857-17186876 None:intergenic 35.0%
!! CTTTCTTGGCTTTTCTGATT+TGG - chr1.3:17189101-17189120 None:intergenic 35.0%
!!! CTTACTGAGACGGATTTTTT+TGG - chr1.3:17188603-17188622 None:intergenic 35.0%
!!! TATTTTTTCCATCGTCTCCT+CGG - chr1.3:17188323-17188342 None:intergenic 35.0%
AAAACCCTACCCATCTTATG+GGG - chr1.3:17187559-17187578 None:intergenic 40.0%
AAAATCCGTCTCAGTAAGGA+AGG + chr1.3:17188605-17188624 MS.gene25198:CDS 40.0%
AACATCTCTCAGGATGTACA+GGG - chr1.3:17187008-17187027 None:intergenic 40.0%
AAGGGAATCTATGAAAGGGT+CGG - chr1.3:17187671-17187690 None:intergenic 40.0%
AATACAAAGCTGAGAGAGGA+GGG - chr1.3:17187757-17187776 None:intergenic 40.0%
ACATCAGCCATGGAATTTCA+GGG + chr1.3:17189250-17189269 MS.gene25198:CDS 40.0%
AGAAGAGGAAATGGATAGCA+TGG + chr1.3:17186646-17186665 MS.gene25198:CDS 40.0%
ATCTTATGGGGATAACACAC+AGG - chr1.3:17187547-17187566 None:intergenic 40.0%
ATGCATGTTCCGTGTATGAT+AGG - chr1.3:17187479-17187498 None:intergenic 40.0%
ATTGCTACCCTGAAATTCCA+TGG - chr1.3:17189260-17189279 None:intergenic 40.0%
CTCTTTAGCAGCCATTGTAA+CGG + chr1.3:17189219-17189238 MS.gene25198:CDS 40.0%
GAAAACCCTACCCATCTTAT+GGG - chr1.3:17187560-17187579 None:intergenic 40.0%
GAACCAAGTGAAATTCCTCT+CGG + chr1.3:17188686-17188705 MS.gene25198:CDS 40.0%
GAATGACAGTAACATCTCTC+AGG - chr1.3:17187018-17187037 None:intergenic 40.0%
GGAATTTCAGGGTAGCAATA+AGG + chr1.3:17189261-17189280 MS.gene25198:CDS 40.0%
GGGATAACACACAGGAAAAT+AGG - chr1.3:17187539-17187558 None:intergenic 40.0%
GTAGTATTAAGCAGGCAGAA+AGG + chr1.3:17189143-17189162 MS.gene25198:CDS 40.0%
GTGTGTTATCCCCATAAGAT+GGG + chr1.3:17187547-17187566 MS.gene25198:intron 40.0%
TAACATCTCTCAGGATGTAC+AGG - chr1.3:17187009-17187028 None:intergenic 40.0%
TATTCTCAAGCAATCTTGCC+TGG - chr1.3:17187049-17187068 None:intergenic 40.0%
TCTCCAGCTTACAAACACAT+GGG + chr1.3:17188953-17188972 MS.gene25198:CDS 40.0%
TCTGAGTAAGCTTAGTTCCA+AGG + chr1.3:17188730-17188749 MS.gene25198:CDS 40.0%
TCTTTAGCAGCCATTGTAAC+GGG + chr1.3:17189220-17189239 MS.gene25198:CDS 40.0%
TGAACAGTTAAAAGGGGTGA+CGG - chr1.3:17188758-17188777 None:intergenic 40.0%
TGACTATTAGAATGGCACGA+GGG - chr1.3:17187831-17187850 None:intergenic 40.0%
TGGAGAGAGAAGATCAATTG+AGG + chr1.3:17187616-17187635 MS.gene25198:intron 40.0%
TGTGTGTTATCCCCATAAGA+TGG + chr1.3:17187546-17187565 MS.gene25198:intron 40.0%
TGTTCAACCTCTTTCAAAGC+AGG + chr1.3:17188637-17188656 MS.gene25198:CDS 40.0%
TTATCCCCATAAGATGGGTA+GGG + chr1.3:17187552-17187571 MS.gene25198:intron 40.0%
TTGGAACTAAGCTTACTCAG+AGG - chr1.3:17188731-17188750 None:intergenic 40.0%
TTTCACAGAGCTATTGCTAC+TGG + chr1.3:17188524-17188543 MS.gene25198:CDS 40.0%
! GCATAATCCTTCAAGTTCAG+GGG - chr1.3:17186985-17187004 None:intergenic 40.0%
! GGCAACTCCTTTTATATTGG+TGG - chr1.3:17187915-17187934 None:intergenic 40.0%
! GGCATAATCCTTCAAGTTCA+GGG - chr1.3:17186986-17187005 None:intergenic 40.0%
! GTTCATTAGGTTGCATTTGC+TGG - chr1.3:17186583-17186602 None:intergenic 40.0%
! GTTGATTCAAGAAGGAGACA+AGG + chr1.3:17189072-17189091 MS.gene25198:CDS 40.0%
! TGTCTTTTGTCCCGTTACAA+TGG - chr1.3:17189233-17189252 None:intergenic 40.0%
! TTCATGCTTCTTTGGAGATG+GGG - chr1.3:17187200-17187219 None:intergenic 40.0%
!! AATCTGTTTTACTGGTGGTG+CGG - chr1.3:17188410-17188429 None:intergenic 40.0%
!! CATGCATCATTAGAAGCACT+TGG + chr1.3:17187492-17187511 MS.gene25198:intron 40.0%
AAAGAGGACCAAACTTCCTC+TGG - chr1.3:17189205-17189224 None:intergenic 45.0%
AACAGGTATACTGGGACAGT+GGG - chr1.3:17187785-17187804 None:intergenic 45.0%
ACATCTCTCAGGATGTACAG+GGG - chr1.3:17187007-17187026 None:intergenic 45.0%
ACCTCCAATCACCATTGTAG+AGG - chr1.3:17188820-17188839 None:intergenic 45.0%
ACCTCTTTCAAAGCAGGAAC+CGG + chr1.3:17188643-17188662 MS.gene25198:CDS 45.0%
ATTGGAGGTCAGATCCGATA+GGG + chr1.3:17188831-17188850 MS.gene25198:CDS 45.0%
CAATACAAAGCTGAGAGAGG+AGG - chr1.3:17187758-17187777 None:intergenic 45.0%
CAGGAACCGGTAGATGAAAT+TGG + chr1.3:17188656-17188675 MS.gene25198:CDS 45.0%
CGACAATACAAAGCTGAGAG+AGG - chr1.3:17187761-17187780 None:intergenic 45.0%
CGTTACAATGGCTGCTAAAG+AGG - chr1.3:17189221-17189240 None:intergenic 45.0%
CTCCAGCTTACAAACACATG+GGG + chr1.3:17188954-17188973 MS.gene25198:CDS 45.0%
CTCTCCAGCTTACAAACACA+TGG + chr1.3:17188952-17188971 MS.gene25198:CDS 45.0%
CTGACTATTAGAATGGCACG+AGG - chr1.3:17187832-17187851 None:intergenic 45.0%
GAACTAAGCTTACTCAGAGG+AGG - chr1.3:17188728-17188747 None:intergenic 45.0%
GACATCAGCCATGGAATTTC+AGG + chr1.3:17189249-17189268 MS.gene25198:CDS 45.0%
GAGCAAGATGATCACACCAT+GGG + chr1.3:17188553-17188572 MS.gene25198:CDS 45.0%
GAGTTCCTTCCTTACTGAGA+CGG - chr1.3:17188613-17188632 None:intergenic 45.0%
GATTCAAGAAGGAGACAAGG+AGG + chr1.3:17189075-17189094 MS.gene25198:CDS 45.0%
GCAACCTCAACAGGTATACT+GGG - chr1.3:17187793-17187812 None:intergenic 45.0%
GCTGAGATACAGAGAGAAAC+TGG + chr1.3:17187596-17187615 MS.gene25198:intron 45.0%
GCTTGAGAATAGAACGTCGT+GGG + chr1.3:17187058-17187077 MS.gene25198:intron 45.0%
GGAAAACCCTACCCATCTTA+TGG - chr1.3:17187561-17187580 None:intergenic 45.0%
GGAAATGGATAGCATGGATG+AGG + chr1.3:17186652-17186671 MS.gene25198:CDS 45.0%
GTTATCCCCATAAGATGGGT+AGG + chr1.3:17187551-17187570 MS.gene25198:intron 45.0%
TCCAGCTTACAAACACATGG+GGG + chr1.3:17188955-17188974 MS.gene25198:CDS 45.0%
TGAGCAAGATGATCACACCA+TGG + chr1.3:17188552-17188571 MS.gene25198:CDS 45.0%
TGCTTGAGAATAGAACGTCG+TGG + chr1.3:17187057-17187076 MS.gene25198:intron 45.0%
TTCACTCTTCGCCTCTACAA+TGG + chr1.3:17188806-17188825 MS.gene25198:CDS 45.0%
TTCATTGGGAAGTCCTGCTA+TGG + chr1.3:17189024-17189043 MS.gene25198:CDS 45.0%
TTCGCCTCTACAATGGTGAT+TGG + chr1.3:17188813-17188832 MS.gene25198:CDS 45.0%
TTGAGTGTGTCCTCAGTGTT+GGG + chr1.3:17188869-17188888 MS.gene25198:CDS 45.0%
TTGTGAAGCAGATGACGCAT+GGG - chr1.3:17187257-17187276 None:intergenic 45.0%
! GGGCATAATCCTTCAAGTTC+AGG - chr1.3:17186987-17187006 None:intergenic 45.0%
! TGAAGATTCAGCTTTGTCCG+AGG + chr1.3:17188303-17188322 MS.gene25198:CDS 45.0%
!! ACGAACTCCACATTTTGGGA+TGG - chr1.3:17186894-17186913 None:intergenic 45.0%
!! ATCTGTTTTACTGGTGGTGC+GGG - chr1.3:17188409-17188428 None:intergenic 45.0%
!! TTGCGTCGGTTGATTCAAGA+AGG + chr1.3:17189064-17189083 MS.gene25198:CDS 45.0%
!!! GGTGGTGCAACACTTTTTTG+CGG - chr1.3:17187897-17187916 None:intergenic 45.0%
!! TATTATTGAAAATAATAAAA+GGG - chr1.3:17187689-17187708 None:intergenic 5.0%
AAATCGGCCCCTGAACTTGA+AGG + chr1.3:17186975-17186994 MS.gene25198:intron 50.0%
ACAACCATGGCTGACCCTAT+CGG - chr1.3:17188848-17188867 None:intergenic 50.0%
ACGAGGGTTCTCACATGACA+TGG - chr1.3:17187815-17187834 None:intergenic 50.0%
AGCTTACTCAGAGGAGGTAG+CGG - chr1.3:17188722-17188741 None:intergenic 50.0%
ATGACCAGCCAGAGGAAGTT+TGG + chr1.3:17189194-17189213 MS.gene25198:CDS 50.0%
CAACAGGTATACTGGGACAG+TGG - chr1.3:17187786-17187805 None:intergenic 50.0%
CAGCTTACAAACACATGGGG+GGG + chr1.3:17188957-17188976 MS.gene25198:CDS 50.0%
CATGACATGGCAACCTCAAC+AGG - chr1.3:17187802-17187821 None:intergenic 50.0%
CCAGCTTACAAACACATGGG+GGG + chr1.3:17188956-17188975 MS.gene25198:CDS 50.0%
CCTAGCTCCATCCCAAAATG+TGG + chr1.3:17186884-17186903 MS.gene25198:intron 50.0%
CTGCTCCAAGCAATGAGTGA+GGG - chr1.3:17188927-17188946 None:intergenic 50.0%
CTGTCCCAGTATACCTGTTG+AGG + chr1.3:17187786-17187805 MS.gene25198:intron 50.0%
GATTGGAGGTCAGATCCGAT+AGG + chr1.3:17188830-17188849 MS.gene25198:CDS 50.0%
GCAGAATGCTTTGACCACCA+TGG - chr1.3:17188581-17188600 None:intergenic 50.0%
GCCTCTACAATGGTGATTGG+AGG + chr1.3:17188816-17188835 MS.gene25198:CDS 50.0%
GGACACACTCAACACAACCA+TGG - chr1.3:17188861-17188880 None:intergenic 50.0%
GGCAACCTCAACAGGTATAC+TGG - chr1.3:17187794-17187813 None:intergenic 50.0%
GGGACAAAAGACATCAGCCA+TGG + chr1.3:17189240-17189259 MS.gene25198:CDS 50.0%
GTTGAGTGTGTCCTCAGTGT+TGG + chr1.3:17188868-17188887 MS.gene25198:CDS 50.0%
GTTGTGAAGCAGATGACGCA+TGG - chr1.3:17187258-17187277 None:intergenic 50.0%
TGATCACACCATGGGATCCA+TGG + chr1.3:17188561-17188580 MS.gene25198:CDS 50.0%
TTTGACCACCATGGATCCCA+TGG - chr1.3:17188572-17188591 None:intergenic 50.0%
! ATGGGTAGGGTTTTCCAGAG+AGG + chr1.3:17187565-17187584 MS.gene25198:intron 50.0%
! GTTTTCCAGAGAGGACTGAC+TGG + chr1.3:17187574-17187593 MS.gene25198:intron 50.0%
! TAAAAGGGGTGACGGTTCCT+TGG - chr1.3:17188750-17188769 None:intergenic 50.0%
! TTCAAGTTCAGGGGCCGATT+TGG - chr1.3:17186976-17186995 None:intergenic 50.0%
!! ACCGGTTCCTGCTTTGAAAG+AGG - chr1.3:17188647-17188666 None:intergenic 50.0%
!! TCTGTTTTACTGGTGGTGCG+GGG - chr1.3:17188408-17188427 None:intergenic 50.0%
!!! CCACATTTTGGGATGGAGCT+AGG - chr1.3:17186887-17186906 None:intergenic 50.0%
AGATCCGATAGGGTCAGCCA+TGG + chr1.3:17188841-17188860 MS.gene25198:CDS 55.0%
AGGACCAAACTTCCTCTGGC+TGG - chr1.3:17189201-17189220 None:intergenic 55.0%
AGGGCTTCCAGTACAGTCTC+TGG - chr1.3:17188908-17188927 None:intergenic 55.0%
CAACCGACGCAAGTCGCAAA+GGG - chr1.3:17189056-17189075 None:intergenic 55.0%
CCCCCCATGTGTTTGTAAGC+TGG - chr1.3:17188959-17188978 None:intergenic 55.0%
CCTCACTCATTGCTTGGAGC+AGG + chr1.3:17188925-17188944 MS.gene25198:CDS 55.0%
CCTGCTCCAAGCAATGAGTG+AGG - chr1.3:17188928-17188947 None:intergenic 55.0%
GAGGCGAAGAGTGAAGCAGT+AGG - chr1.3:17188801-17188820 None:intergenic 55.0%
GGAAGCCCTCACTCATTGCT+TGG + chr1.3:17188919-17188938 MS.gene25198:CDS 55.0%
GGGCCGAGAGGAATTTCACT+TGG - chr1.3:17188692-17188711 None:intergenic 55.0%
TCAACCGACGCAAGTCGCAA+AGG - chr1.3:17189057-17189076 None:intergenic 55.0%
TCACACCATGGGATCCATGG+TGG + chr1.3:17188564-17188583 MS.gene25198:CDS 55.0%
TGAAAGGGTCGGATGAGCAG+CGG - chr1.3:17187660-17187679 None:intergenic 55.0%
TTGGGTTCATGACCAGCCAG+AGG + chr1.3:17189186-17189205 MS.gene25198:CDS 55.0%
! AGCTTTGTCCGAGGAGACGA+TGG + chr1.3:17188312-17188331 MS.gene25198:CDS 55.0%
! CAAAGGGCACACACCATAGC+AGG - chr1.3:17189040-17189059 None:intergenic 55.0%
! CTTTGGAGATGGGGTGTTCC+TGG - chr1.3:17187191-17187210 None:intergenic 55.0%
! GTGTCCTCAGTGTTGGGTCA+CGG + chr1.3:17188875-17188894 MS.gene25198:CDS 55.0%
!! AAGTTCAGGGGCCGATTTGG+AGG - chr1.3:17186973-17186992 None:intergenic 55.0%
!! AGAGGAGGTAGCGGAACTTC+AGG - chr1.3:17188713-17188732 None:intergenic 55.0%
!! CTGTTTTACTGGTGGTGCGG+GGG - chr1.3:17188407-17188426 None:intergenic 55.0%
!! GAGGAGGTAGCGGAACTTCA+GGG - chr1.3:17188712-17188731 None:intergenic 55.0%
CTCAGCCAGTCAGTCCTCTC+TGG - chr1.3:17187582-17187601 None:intergenic 60.0%
GAAAGGGTCGGATGAGCAGC+GGG - chr1.3:17187659-17187678 None:intergenic 60.0%
GTGCCCTTTGCGACTTGCGT+CGG + chr1.3:17189050-17189069 MS.gene25198:CDS 60.0%
TGGGCAGCCAGAGACTGTAC+TGG + chr1.3:17188898-17188917 MS.gene25198:CDS 60.0%
! CCTCAGTGTTGGGTCACGGT+GGG + chr1.3:17188879-17188898 MS.gene25198:CDS 60.0%
! TCCTCAGTGTTGGGTCACGG+TGG + chr1.3:17188878-17188897 MS.gene25198:CDS 60.0%
AGCGGAACTTCAGGGCCGAG+AGG - chr1.3:17188704-17188723 None:intergenic 65.0%
CACATGGGGGGGCTGCAGTT+CGG + chr1.3:17188968-17188987 MS.gene25198:CDS 65.0%
CCCACCGTGACCCAACACTG+AGG - chr1.3:17188882-17188901 None:intergenic 65.0%
GGGGGGCTGCAGTTCGGTTT+AGG + chr1.3:17188974-17188993 MS.gene25198:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 17186554 17189345 17186554 ID=MS.gene25198
chr1.3 mRNA 17186554 17189345 17186554 ID=MS.gene25198.t1;Parent=MS.gene25198
chr1.3 exon 17186554 17186677 17186554 ID=MS.gene25198.t1.exon1;Parent=MS.gene25198.t1
chr1.3 CDS 17186554 17186677 17186554 ID=cds.MS.gene25198.t1;Parent=MS.gene25198.t1
chr1.3 exon 17188299 17188349 17188299 ID=MS.gene25198.t1.exon2;Parent=MS.gene25198.t1
chr1.3 CDS 17188299 17188349 17188299 ID=cds.MS.gene25198.t1;Parent=MS.gene25198.t1
chr1.3 exon 17188477 17189345 17188477 ID=MS.gene25198.t1.exon3;Parent=MS.gene25198.t1
chr1.3 CDS 17188477 17189345 17188477 ID=cds.MS.gene25198.t1;Parent=MS.gene25198.t1
Gene Sequence

>MS.gene25198

ATGAAAGAAAATGTAGTTCAAGAGCTCCAGCAAATGCAACCTAATGAACAAACCAAACAAAAAATGTTGGACATACTGAAGAGATTTCATTCAGAAGAGGAAATGGATAGCATGGATGAGGATTGTAAGTCATCTGTATTTTTTGCTTTGCTTTCAGAAATTCAGATATTTCAGAGTTGTTTCACTGCACTCTTTCTGTTTGATATTTATCTTTGCATGTGAGTTTATTTGGTTTTGTATTTTTTTTCTTTCTCAAGGATATATTTTTAGTTATAATAATGACATTCAATTCAACAACTTCCTAGCTTTTCCCTCAAAAACATACAACTTCCTAGCTCCATCCCAAAATGTGGAGTTCGTTATTCAATGTGTTGGGCTCTATTAAAACCTGAATTTCAGTGAAATATTTGACTAAACCTCCAAATCGGCCCCTGAACTTGAAGGATTATGCCCCTGTACATCCTGAGAGATGTTACTGTCATTCAAATTAATCCAGGCAAGATTGCTTGAGAATAGAACGTCGTGGGCCAAATATGTAAATCCAATAATAACTTTTAATGTGGCAACATGAGAATAGAACATTGTGGGCCAATAATAACTTATAGCTCTGCAAATCTCACCCAAATATGTAAATCCAGGAACACCCCATCTCCAAAGAAGCATGAAATATCAAAATTCACAATGAAAATGTGGTATCATGCCCATGCGTCATCTGCTTCACAACATCCTTAATAAGTTATTATTAATGAAGTTTTGGAAAATTAGTGTTAGAGAATTTGATTGTAACTGAATTTCATTTTTATTTGCTTGTTGAACTTAACAATGTATGAACAACGGTATTAACTGTCACTCTGTCAGTTATAAAACTCTAAGAACTGAAGTTAGCAGTGCTCTGCTCACTGTTCAGAGTATTTCATGTACTCCTATCATACACGGAACATGCATCATTAGAAGCACTTGGCCGATAATTATGATAATGACGCCTATTTTCCTGTGTGTTATCCCCATAAGATGGGTAGGGTTTTCCAGAGAGGACTGACTGGCTGAGATACAGAGAGAAACTGGAGAGAGAAGATCAATTGAGGTTTTTTATGCGTGTTATCCCGCTGCTCATCCGACCCTTTCATAGATTCCCTTTTATTATTTTCAATAATAGGTTGGCGAAAATCTGGAATATCCCCTAATGAATAAGATGGGTTACCCTCCTCTCTCAGCTTTGTATTGTCGTCCCACTGTCCCAGTATACCTGTTGAGGTTGCCATGTCATGTGAGAACCCTCGTGCCATTCTAATAGTCAGACTCATTAAAGATCTAATGTAGTAAATGTCAAGTGGCGGATTCCGCAAAAAAGTGTTGCACCACCAATATAAAAGGAGTTGCCATCAGTTTGCTTTTTATTTTATTCTGTCAATGAAAAACATCTGTTTGCTTTTGCTATTTGTTACGGGACCACTAAATGTTTGTGACTTTGTAAACAAGTTAATTTTTTAGAAGATGGTCTTTCATAGTTGCTGAATGATGTAAAGTCAATGAAGCATTTAGTTTAGTGGATTTTAGAATAATTACAGCCTAGCATTGTTGATCATTTAACGAATGTAATTTTGTAAACAAATTATCACATCATAAGTGAACTCTTATTGTTTTGTGTTTGATTATGTTGGAAGAGTTTTTGAGGTCATAATTTTTAATTCTCTAATTATACCAATAAAGAAGGGTACTAAATTTCTATCTAATTGTTTTCCCAGCTTTTGAAGATTCAGCTTTGTCCGAGGAGACGATGGAAAAAATAATGTCAGGTATGTTCCTATTGAATACATATCCTTTATTGCGTGTATCTTCTAACTGCTCTACCCCCGCACCACCAGTAAAACAGATTTTTATCTATGGTTGGGTGAGGCTGATTTTATTTTCATTTCACTACAGGACAAGAAATCAGTTTCGATGATTTATCTCTTGAAGAGAAGAAACGATTTCACAGAGCTATTGCTACTGGCGAATTGAGCAAGATGATCACACCATGGGATCCATGGTGGTCAAAGCATTCTGCCAAAAAAATCCGTCTCAGTAAGGAAGGAACTCAACTTGTTCAACCTCTTTCAAAGCAGGAACCGGTAGATGAAATTGGAAGTAACGAACCAAGTGAAATTCCTCTCGGCCCTGAAGTTCCGCTACCTCCTCTGAGTAAGCTTAGTTCCAAGGAACCGTCACCCCTTTTAACTGTTCACCTAGTTGATATATTATACTCCTACTGCTTCACTCTTCGCCTCTACAATGGTGATTGGAGGTCAGATCCGATAGGGTCAGCCATGGTTGTGTTGAGTGTGTCCTCAGTGTTGGGTCACGGTGGGCAGCCAGAGACTGTACTGGAAGCCCTCACTCATTGCTTGGAGCAGGTATGCTCTCCAGCTTACAAACACATGGGGGGGCTGCAGTTCGGTTTAGGTGTTATTGATGATGTTATCAGTCTACTTTCATTGGGAAGTCCTGCTATGGTGTGTGCCCTTTGCGACTTGCGTCGGTTGATTCAAGAAGGAGACAAGGAGGCCAAATCAGAAAAGCCAAGAAAGTTGAAGAAGAATGAGATTAGAAGTAGTATTAAGCAGGCAGAAAGGAAGATATATTTCATCATGTGTTGGGTTCATGACCAGCCAGAGGAAGTTTGGTCCTCTTTAGCAGCCATTGTAACGGGACAAAAGACATCAGCCATGGAATTTCAGGGTAGCAATAAGGCTGAAAAATTGAACAATAAAGCAGAATCAAGAGGCAAATGTTTGATTGAGGAGATTGAATGA

Protein sequence

>MS.gene25198.t1

MKENVVQELQQMQPNEQTKQKMLDILKRFHSEEEMDSMDEDSFEDSALSEETMEKIMSGQEISFDDLSLEEKKRFHRAIATGELSKMITPWDPWWSKHSAKKIRLSKEGTQLVQPLSKQEPVDEIGSNEPSEIPLGPEVPLPPLSKLSSKEPSPLLTVHLVDILYSYCFTLRLYNGDWRSDPIGSAMVVLSVSSVLGHGGQPETVLEALTHCLEQVCSPAYKHMGGLQFGLGVIDDVISLLSLGSPAMVCALCDLRRLIQEGDKEAKSEKPRKLKKNEIRSSIKQAERKIYFIMCWVHDQPEEVWSSLAAIVTGQKTSAMEFQGSNKAEKLNNKAESRGKCLIEEIE