Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25198.t1 | XP_013466560.1 | 88.5 | 347 | 39 | 1 | 1 | 347 | 60 | 405 | 1.50E-164 | 589 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25198.t1 | Q2TBW5 | 23.8 | 320 | 200 | 8 | 7 | 302 | 49 | 348 | 1.4e-09 | 65.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25198.t1 | A0A072VFL0 | 88.5 | 347 | 39 | 1 | 1 | 347 | 60 | 405 | 1.1e-164 | 589.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051122 | MS.gene25198 | 0.811883 | 5.60E-51 | -1.69E-46 |
MS.gene052954 | MS.gene25198 | 0.800805 | 1.21E-48 | -1.69E-46 |
MS.gene053298 | MS.gene25198 | 0.80789 | 4.05E-50 | -1.69E-46 |
MS.gene056986 | MS.gene25198 | 0.804047 | 2.61E-49 | -1.69E-46 |
MS.gene057999 | MS.gene25198 | 0.821172 | 4.65E-53 | -1.69E-46 |
MS.gene059872 | MS.gene25198 | -0.800759 | 1.24E-48 | -1.69E-46 |
MS.gene060297 | MS.gene25198 | 0.801766 | 7.71E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25198.t1 | MTR_1g032200 | 88.473 | 347 | 39 | 1 | 1 | 347 | 60 | 405 | 0.0 | 599 |
MS.gene25198.t1 | MTR_1g032200 | 88.473 | 347 | 39 | 1 | 1 | 347 | 1 | 346 | 0.0 | 599 |
MS.gene25198.t1 | MTR_5g025880 | 87.353 | 340 | 41 | 2 | 1 | 339 | 60 | 398 | 0.0 | 538 |
MS.gene25198.t1 | MTR_1g090530 | 72.294 | 231 | 29 | 2 | 43 | 273 | 19 | 214 | 5.17e-111 | 322 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25198.t1 | AT5G63830 | 54.391 | 353 | 145 | 5 | 1 | 347 | 64 | 406 | 3.14e-123 | 360 |
Find 93 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACATCAGCCATGGAATTTC+AGG | 0.185152 | 1.3:+17189249 | MS.gene25198:CDS |
TCATTCTTCTTCAACTTTCT+TGG | 0.196072 | 1.3:-17189112 | None:intergenic |
CAACTAGGTGAACAGTTAAA+AGG | 0.224295 | 1.3:-17188763 | None:intergenic |
GTTCATTAGGTTGCATTTGC+TGG | 0.232839 | 1.3:-17186580 | None:intergenic |
TGTTATCAGTCTACTTTCAT+TGG | 0.309270 | 1.3:+17189009 | MS.gene25198:CDS |
CAGGAACCGGTAGATGAAAT+TGG | 0.320976 | 1.3:+17188656 | MS.gene25198:CDS |
ATGACCAGCCAGAGGAAGTT+TGG | 0.352244 | 1.3:+17189194 | MS.gene25198:CDS |
AACTAGGTGAACAGTTAAAA+GGG | 0.384089 | 1.3:-17188762 | None:intergenic |
ATTTCATTCAGAAGAGGAAA+TGG | 0.384308 | 1.3:+17186637 | MS.gene25198:CDS |
GGAATTTCAGGGTAGCAATA+AGG | 0.390666 | 1.3:+17189261 | MS.gene25198:CDS |
AGAGGAGGTAGCGGAACTTC+AGG | 0.391556 | 1.3:-17188710 | None:intergenic |
GATATATTTCATCATGTGTT+GGG | 0.412935 | 1.3:+17189168 | MS.gene25198:CDS |
ACCTCTTTCAAAGCAGGAAC+CGG | 0.420320 | 1.3:+17188643 | MS.gene25198:CDS |
TCTTTAGCAGCCATTGTAAC+GGG | 0.442868 | 1.3:+17189220 | MS.gene25198:CDS |
GAGGAGGTAGCGGAACTTCA+GGG | 0.451045 | 1.3:-17188709 | None:intergenic |
CGTTACAATGGCTGCTAAAG+AGG | 0.452467 | 1.3:-17189218 | None:intergenic |
GTTATCAGTCTACTTTCATT+GGG | 0.454234 | 1.3:+17189010 | MS.gene25198:CDS |
TAAAAGGGGTGACGGTTCCT+TGG | 0.459185 | 1.3:-17188747 | None:intergenic |
GTTGAGTGTGTCCTCAGTGT+TGG | 0.464931 | 1.3:+17188868 | MS.gene25198:CDS |
AGGGCTTCCAGTACAGTCTC+TGG | 0.477548 | 1.3:-17188905 | None:intergenic |
TTGAGTGTGTCCTCAGTGTT+GGG | 0.478818 | 1.3:+17188869 | MS.gene25198:CDS |
TGTTCAACCTCTTTCAAAGC+AGG | 0.484187 | 1.3:+17188637 | MS.gene25198:CDS |
TTACTTCCAATTTCATCTAC+CGG | 0.486431 | 1.3:-17188662 | None:intergenic |
AGATATATTTCATCATGTGT+TGG | 0.495468 | 1.3:+17189167 | MS.gene25198:CDS |
ACCGGTTCCTGCTTTGAAAG+AGG | 0.496464 | 1.3:-17188644 | None:intergenic |
TTCGCCTCTACAATGGTGAT+TGG | 0.497161 | 1.3:+17188813 | MS.gene25198:CDS |
AAAGAGGACCAAACTTCCTC+TGG | 0.497868 | 1.3:-17189202 | None:intergenic |
CAACCGACGCAAGTCGCAAA+GGG | 0.505392 | 1.3:-17189053 | None:intergenic |
TTCATTGGGAAGTCCTGCTA+TGG | 0.507704 | 1.3:+17189024 | MS.gene25198:CDS |
CTCTCCAGCTTACAAACACA+TGG | 0.512546 | 1.3:+17188952 | MS.gene25198:CDS |
AAGAGGCAAATGTTTGATTG+AGG | 0.516851 | 1.3:+17189312 | MS.gene25198:CDS |
AGAAGAGGAAATGGATAGCA+TGG | 0.518113 | 1.3:+17186646 | MS.gene25198:CDS |
CAAAGGGCACACACCATAGC+AGG | 0.519183 | 1.3:-17189037 | None:intergenic |
TTTCACAGAGCTATTGCTAC+TGG | 0.519314 | 1.3:+17188524 | MS.gene25198:CDS |
CCTCACTCATTGCTTGGAGC+AGG | 0.521640 | 1.3:+17188925 | MS.gene25198:CDS |
GGAAGCCCTCACTCATTGCT+TGG | 0.522054 | 1.3:+17188919 | MS.gene25198:CDS |
CTCTTTAGCAGCCATTGTAA+CGG | 0.523197 | 1.3:+17189219 | MS.gene25198:CDS |
GCCTCTACAATGGTGATTGG+AGG | 0.527545 | 1.3:+17188816 | MS.gene25198:CDS |
CCTCAGTGTTGGGTCACGGT+GGG | 0.529875 | 1.3:+17188879 | MS.gene25198:CDS |
GAAGAGATTTCATTCAGAAG+AGG | 0.535233 | 1.3:+17186631 | MS.gene25198:CDS |
GATTAGAAGTAGTATTAAGC+AGG | 0.541049 | 1.3:+17189135 | MS.gene25198:CDS |
AGCTTACTCAGAGGAGGTAG+CGG | 0.543280 | 1.3:-17188719 | None:intergenic |
TGATCACACCATGGGATCCA+TGG | 0.543972 | 1.3:+17188561 | MS.gene25198:CDS |
GGAAATGGATAGCATGGATG+AGG | 0.544636 | 1.3:+17186652 | MS.gene25198:CDS |
AGGACCAAACTTCCTCTGGC+TGG | 0.545689 | 1.3:-17189198 | None:intergenic |
ACAACCATGGCTGACCCTAT+CGG | 0.555107 | 1.3:-17188845 | None:intergenic |
ACATCAGCCATGGAATTTCA+GGG | 0.556707 | 1.3:+17189250 | MS.gene25198:CDS |
GGGCCGAGAGGAATTTCACT+TGG | 0.558432 | 1.3:-17188689 | None:intergenic |
GTGTCCTCAGTGTTGGGTCA+CGG | 0.559629 | 1.3:+17188875 | MS.gene25198:CDS |
AAAATCCGTCTCAGTAAGGA+AGG | 0.559950 | 1.3:+17188605 | MS.gene25198:CDS |
GAGTTCCTTCCTTACTGAGA+CGG | 0.560318 | 1.3:-17188610 | None:intergenic |
ATTGCTACCCTGAAATTCCA+TGG | 0.560925 | 1.3:-17189257 | None:intergenic |
GTAGTATTAAGCAGGCAGAA+AGG | 0.563955 | 1.3:+17189143 | MS.gene25198:CDS |
TCAACCGACGCAAGTCGCAA+AGG | 0.565113 | 1.3:-17189054 | None:intergenic |
TTGCGTCGGTTGATTCAAGA+AGG | 0.565624 | 1.3:+17189064 | MS.gene25198:CDS |
AGCTTTGTCCGAGGAGACGA+TGG | 0.565958 | 1.3:+17188312 | MS.gene25198:CDS |
AACAATAAAGCAGAATCAAG+AGG | 0.565977 | 1.3:+17189295 | MS.gene25198:CDS |
TGGGCAGCCAGAGACTGTAC+TGG | 0.572805 | 1.3:+17188898 | MS.gene25198:CDS |
TCTGAGTAAGCTTAGTTCCA+AGG | 0.576318 | 1.3:+17188730 | MS.gene25198:CDS |
TTCACTCTTCGCCTCTACAA+TGG | 0.580947 | 1.3:+17188806 | MS.gene25198:CDS |
GTGCCCTTTGCGACTTGCGT+CGG | 0.591448 | 1.3:+17189050 | MS.gene25198:CDS |
GCAGAATGCTTTGACCACCA+TGG | 0.595624 | 1.3:-17188578 | None:intergenic |
ATTGGAGGTCAGATCCGATA+GGG | 0.609839 | 1.3:+17188831 | MS.gene25198:CDS |
GATTGGAGGTCAGATCCGAT+AGG | 0.613080 | 1.3:+17188830 | MS.gene25198:CDS |
TCCTCAGTGTTGGGTCACGG+TGG | 0.617160 | 1.3:+17188878 | MS.gene25198:CDS |
CTGCTCCAAGCAATGAGTGA+GGG | 0.618835 | 1.3:-17188924 | None:intergenic |
ACCTCCAATCACCATTGTAG+AGG | 0.624097 | 1.3:-17188817 | None:intergenic |
GAACCAAGTGAAATTCCTCT+CGG | 0.627401 | 1.3:+17188686 | MS.gene25198:CDS |
GAGCAAGATGATCACACCAT+GGG | 0.627867 | 1.3:+17188553 | MS.gene25198:CDS |
GAACTAAGCTTACTCAGAGG+AGG | 0.635073 | 1.3:-17188725 | None:intergenic |
TGAACAGTTAAAAGGGGTGA+CGG | 0.639161 | 1.3:-17188755 | None:intergenic |
GAGGCGAAGAGTGAAGCAGT+AGG | 0.639548 | 1.3:-17188798 | None:intergenic |
TCCAGCTTACAAACACATGG+GGG | 0.640813 | 1.3:+17188955 | MS.gene25198:CDS |
GGGACAAAAGACATCAGCCA+TGG | 0.643628 | 1.3:+17189240 | MS.gene25198:CDS |
TCTCCAGCTTACAAACACAT+GGG | 0.644640 | 1.3:+17188953 | MS.gene25198:CDS |
CTCCAGCTTACAAACACATG+GGG | 0.647609 | 1.3:+17188954 | MS.gene25198:CDS |
TGAAGATTCAGCTTTGTCCG+AGG | 0.650725 | 1.3:+17188303 | MS.gene25198:CDS |
CCAGCTTACAAACACATGGG+GGG | 0.654030 | 1.3:+17188956 | MS.gene25198:CDS |
ACTAGGTGAACAGTTAAAAG+GGG | 0.655501 | 1.3:-17188761 | None:intergenic |
TTTGACCACCATGGATCCCA+TGG | 0.656067 | 1.3:-17188569 | None:intergenic |
CAGCTTACAAACACATGGGG+GGG | 0.657868 | 1.3:+17188957 | MS.gene25198:CDS |
AGGAGTATAATATATCAACT+AGG | 0.659318 | 1.3:-17188778 | None:intergenic |
AGATCCGATAGGGTCAGCCA+TGG | 0.668328 | 1.3:+17188841 | MS.gene25198:CDS |
CCTGCTCCAAGCAATGAGTG+AGG | 0.668912 | 1.3:-17188925 | None:intergenic |
TGAGCAAGATGATCACACCA+TGG | 0.669134 | 1.3:+17188552 | MS.gene25198:CDS |
GGACACACTCAACACAACCA+TGG | 0.681189 | 1.3:-17188858 | None:intergenic |
AGCGGAACTTCAGGGCCGAG+AGG | 0.688421 | 1.3:-17188701 | None:intergenic |
TTGGGTTCATGACCAGCCAG+AGG | 0.689050 | 1.3:+17189186 | MS.gene25198:CDS |
GTTGATTCAAGAAGGAGACA+AGG | 0.690629 | 1.3:+17189072 | MS.gene25198:CDS |
TTGGAACTAAGCTTACTCAG+AGG | 0.719107 | 1.3:-17188728 | None:intergenic |
GATTCAAGAAGGAGACAAGG+AGG | 0.728271 | 1.3:+17189075 | MS.gene25198:CDS |
TCACACCATGGGATCCATGG+TGG | 0.731581 | 1.3:+17188564 | MS.gene25198:CDS |
CCCACCGTGACCCAACACTG+AGG | 0.760863 | 1.3:-17188879 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTATTATTGAAAATAATAAA+AGG | - | chr1.3:17187690-17187709 | None:intergenic | 10.0% |
!! | TCATTAATAATAACTTATTA+AGG | - | chr1.3:17187283-17187302 | None:intergenic | 10.0% |
!!! | CTTTTATTATTTTCAATAAT+AGG | + | chr1.3:17187688-17187707 | MS.gene25198:intron | 10.0% |
!! | TATTATTGGATTTACATATT+TGG | - | chr1.3:17187084-17187103 | None:intergenic | 15.0% |
!!! | AGTTATTATTAATGAAGTTT+TGG | + | chr1.3:17187288-17187307 | MS.gene25198:intron | 15.0% |
!!! | TATTATTTTCAATAATAGGT+TGG | + | chr1.3:17187692-17187711 | MS.gene25198:intron | 15.0% |
!! | ATAAAGGATATGTATTCAAT+AGG | - | chr1.3:17188360-17188379 | None:intergenic | 20.0% |
!! | CTAATTATACCAATAAAGAA+GGG | + | chr1.3:17188246-17188265 | MS.gene25198:intron | 20.0% |
!! | TAAAATAAAAAGCAAACTGA+TGG | - | chr1.3:17187936-17187955 | None:intergenic | 20.0% |
!! | TCTAATTATACCAATAAAGA+AGG | + | chr1.3:17188245-17188264 | MS.gene25198:intron | 20.0% |
!!! | CAAGTTAATTTTTTAGAAGA+TGG | + | chr1.3:17188029-17188048 | MS.gene25198:intron | 20.0% |
!!! | GTAAAACAGATTTTTATCTA+TGG | + | chr1.3:17188418-17188437 | MS.gene25198:intron | 20.0% |
!!! | TAGATAAAAATCTGTTTTAC+TGG | - | chr1.3:17188418-17188437 | None:intergenic | 20.0% |
!!! | TCCAATAATAACTTTTAATG+TGG | + | chr1.3:17187094-17187113 | MS.gene25198:intron | 20.0% |
!!! | TGTATTTTTTTTCTTTCTCA+AGG | + | chr1.3:17186789-17186808 | MS.gene25198:intron | 20.0% |
!!! | TTTTATTTTCATTTCACTAC+AGG | + | chr1.3:17188455-17188474 | MS.gene25198:intron | 20.0% |
! | AATAAAAGGGAATCTATGAA+AGG | - | chr1.3:17187676-17187695 | None:intergenic | 25.0% |
! | AATTTAGTACCCTTCTTTAT+TGG | - | chr1.3:17188258-17188277 | None:intergenic | 25.0% |
! | ACAAACCAAACAAAAAATGT+TGG | + | chr1.3:17186601-17186620 | MS.gene25198:CDS | 25.0% |
! | ACTTAACAATGTATGAACAA+CGG | + | chr1.3:17187368-17187387 | MS.gene25198:intron | 25.0% |
! | AGATATATTTCATCATGTGT+TGG | + | chr1.3:17189167-17189186 | MS.gene25198:CDS | 25.0% |
! | ATAAAAGGGAATCTATGAAA+GGG | - | chr1.3:17187675-17187694 | None:intergenic | 25.0% |
! | CAAAATTCACAATGAAAATG+TGG | + | chr1.3:17187224-17187243 | MS.gene25198:intron | 25.0% |
! | CAAATATTTCACTGAAATTC+AGG | - | chr1.3:17186944-17186963 | None:intergenic | 25.0% |
! | GATATATTTCATCATGTGTT+GGG | + | chr1.3:17189168-17189187 | MS.gene25198:CDS | 25.0% |
! | GCCACATTAAAAGTTATTAT+TGG | - | chr1.3:17187098-17187117 | None:intergenic | 25.0% |
! | TTTGATATTTCATGCTTCTT+TGG | - | chr1.3:17187208-17187227 | None:intergenic | 25.0% |
!! | AACAGATTTTTATCTATGGT+TGG | + | chr1.3:17188422-17188441 | MS.gene25198:intron | 25.0% |
!! | ACAGATTTTTATCTATGGTT+GGG | + | chr1.3:17188423-17188442 | MS.gene25198:intron | 25.0% |
!! | AGGAGTATAATATATCAACT+AGG | - | chr1.3:17188781-17188800 | None:intergenic | 25.0% |
!! | ATAAAAATCTGTTTTACTGG+TGG | - | chr1.3:17188415-17188434 | None:intergenic | 25.0% |
!! | TGTTTTGTGTTTGATTATGT+TGG | + | chr1.3:17188192-17188211 | MS.gene25198:intron | 25.0% |
!!! | TATGTCCAACATTTTTTGTT+TGG | - | chr1.3:17186609-17186628 | None:intergenic | 25.0% |
!!! | TTTGCTTTTGCTATTTGTTA+CGG | + | chr1.3:17187978-17187997 | MS.gene25198:intron | 25.0% |
!!! | TTTTGTTTGGTTTGTTCATT+AGG | - | chr1.3:17186596-17186615 | None:intergenic | 25.0% |
AACAATAAAGCAGAATCAAG+AGG | + | chr1.3:17189295-17189314 | MS.gene25198:CDS | 30.0% | |
AACATGAGAATAGAACATTG+TGG | + | chr1.3:17187118-17187137 | MS.gene25198:intron | 30.0% | |
AACTAGGTGAACAGTTAAAA+GGG | - | chr1.3:17188765-17188784 | None:intergenic | 30.0% | |
AATGAGTCTGACTATTAGAA+TGG | - | chr1.3:17187839-17187858 | None:intergenic | 30.0% | |
ACAAAGTCACAAACATTTAG+TGG | - | chr1.3:17188006-17188025 | None:intergenic | 30.0% | |
ACATGAGAATAGAACATTGT+GGG | + | chr1.3:17187119-17187138 | MS.gene25198:intron | 30.0% | |
ACGATGGAAAAAATAATGTC+AGG | + | chr1.3:17188328-17188347 | MS.gene25198:CDS | 30.0% | |
ACTGTCATTCAAATTAATCC+AGG | + | chr1.3:17187028-17187047 | MS.gene25198:intron | 30.0% | |
AGTTCGTTATTCAATGTGTT+GGG | + | chr1.3:17186907-17186926 | MS.gene25198:intron | 30.0% | |
ATATCCCCTAATGAATAAGA+TGG | + | chr1.3:17187727-17187746 | MS.gene25198:intron | 30.0% | |
ATTTCATTCAGAAGAGGAAA+TGG | + | chr1.3:17186637-17186656 | MS.gene25198:CDS | 30.0% | |
ATTTGACTAAACCTCCAAAT+CGG | + | chr1.3:17186959-17186978 | MS.gene25198:intron | 30.0% | |
CTAATGTAGTAAATGTCAAG+TGG | + | chr1.3:17187865-17187884 | MS.gene25198:intron | 30.0% | |
GATTAGAAGTAGTATTAAGC+AGG | + | chr1.3:17189135-17189154 | MS.gene25198:CDS | 30.0% | |
GCAGAGCTATAAGTTATTAT+TGG | - | chr1.3:17187145-17187164 | None:intergenic | 30.0% | |
GGCGTCATTATCATAATTAT+CGG | - | chr1.3:17187518-17187537 | None:intergenic | 30.0% | |
GTAACCCATCTTATTCATTA+GGG | - | chr1.3:17187735-17187754 | None:intergenic | 30.0% | |
GTTAAATGATCAACAATGCT+AGG | - | chr1.3:17188125-17188144 | None:intergenic | 30.0% | |
GTTATCAGTCTACTTTCATT+GGG | + | chr1.3:17189010-17189029 | MS.gene25198:CDS | 30.0% | |
GTTCCTGGATTTACATATTT+GGG | - | chr1.3:17187176-17187195 | None:intergenic | 30.0% | |
TAACCCATCTTATTCATTAG+GGG | - | chr1.3:17187734-17187753 | None:intergenic | 30.0% | |
TATCCCCTAATGAATAAGAT+GGG | + | chr1.3:17187728-17187747 | MS.gene25198:intron | 30.0% | |
TCATTCTTCTTCAACTTTCT+TGG | - | chr1.3:17189115-17189134 | None:intergenic | 30.0% | |
TCTTTGCATGTGAGTTTATT+TGG | + | chr1.3:17186763-17186782 | MS.gene25198:intron | 30.0% | |
TGTTATCAGTCTACTTTCAT+TGG | + | chr1.3:17189009-17189028 | MS.gene25198:CDS | 30.0% | |
TGTTCCTGGATTTACATATT+TGG | - | chr1.3:17187177-17187196 | None:intergenic | 30.0% | |
TTACTTCCAATTTCATCTAC+CGG | - | chr1.3:17188665-17188684 | None:intergenic | 30.0% | |
TTAGAAGATACACGCAATAA+AGG | - | chr1.3:17188376-17188395 | None:intergenic | 30.0% | |
! | AATAACGAACTCCACATTTT+GGG | - | chr1.3:17186898-17186917 | None:intergenic | 30.0% |
! | CAATGAAGCATTTAGTTTAG+TGG | + | chr1.3:17188081-17188100 | MS.gene25198:intron | 30.0% |
! | TTATGTTGGAAGAGTTTTTG+AGG | + | chr1.3:17188206-17188225 | MS.gene25198:intron | 30.0% |
!! | AGGAAGTTGTATGTTTTTGA+GGG | - | chr1.3:17186867-17186886 | None:intergenic | 30.0% |
!! | TAGGAAGTTGTATGTTTTTG+AGG | - | chr1.3:17186868-17186887 | None:intergenic | 30.0% |
!!! | TTGCTTTTGCTATTTGTTAC+GGG | + | chr1.3:17187979-17187998 | MS.gene25198:intron | 30.0% |
AAAGCTGAATCTTCAAAAGC+TGG | - | chr1.3:17188298-17188317 | None:intergenic | 35.0% | |
AAGAGGCAAATGTTTGATTG+AGG | + | chr1.3:17189312-17189331 | MS.gene25198:CDS | 35.0% | |
AAGCTGAATCTTCAAAAGCT+GGG | - | chr1.3:17188297-17188316 | None:intergenic | 35.0% | |
ACTAGGTGAACAGTTAAAAG+GGG | - | chr1.3:17188764-17188783 | None:intergenic | 35.0% | |
ATGTAGTAAATGTCAAGTGG+CGG | + | chr1.3:17187868-17187887 | MS.gene25198:intron | 35.0% | |
CAAAAAAATCCGTCTCAGTA+AGG | + | chr1.3:17188601-17188620 | MS.gene25198:CDS | 35.0% | |
CAACTAGGTGAACAGTTAAA+AGG | - | chr1.3:17188766-17188785 | None:intergenic | 35.0% | |
GAAGAGATTTCATTCAGAAG+AGG | + | chr1.3:17186631-17186650 | MS.gene25198:CDS | 35.0% | |
GAGTTCGTTATTCAATGTGT+TGG | + | chr1.3:17186906-17186925 | MS.gene25198:intron | 35.0% | |
GGTAACCCATCTTATTCATT+AGG | - | chr1.3:17187736-17187755 | None:intergenic | 35.0% | |
TCACCCAAATATGTAAATCC+AGG | + | chr1.3:17187170-17187189 | MS.gene25198:intron | 35.0% | |
TCATGTACTCCTATCATACA+CGG | + | chr1.3:17187467-17187486 | MS.gene25198:intron | 35.0% | |
TGTTGCACCACCAATATAAA+AGG | + | chr1.3:17187905-17187924 | MS.gene25198:intron | 35.0% | |
! | ATAATAGGTTGGCGAAAATC+TGG | + | chr1.3:17187703-17187722 | MS.gene25198:intron | 35.0% |
! | ATTTCATGCTTCTTTGGAGA+TGG | - | chr1.3:17187202-17187221 | None:intergenic | 35.0% |
! | GAATAACGAACTCCACATTT+TGG | - | chr1.3:17186899-17186918 | None:intergenic | 35.0% |
! | GATGGCAACTCCTTTTATAT+TGG | - | chr1.3:17187918-17187937 | None:intergenic | 35.0% |
! | TTTCATGCTTCTTTGGAGAT+GGG | - | chr1.3:17187201-17187220 | None:intergenic | 35.0% |
! | TTTTTATCTATGGTTGGGTG+AGG | + | chr1.3:17188428-17188447 | MS.gene25198:intron | 35.0% |
!! | ATGTTTTTGAGGGAAAAGCT+AGG | - | chr1.3:17186857-17186876 | None:intergenic | 35.0% |
!! | CTTTCTTGGCTTTTCTGATT+TGG | - | chr1.3:17189101-17189120 | None:intergenic | 35.0% |
!!! | CTTACTGAGACGGATTTTTT+TGG | - | chr1.3:17188603-17188622 | None:intergenic | 35.0% |
!!! | TATTTTTTCCATCGTCTCCT+CGG | - | chr1.3:17188323-17188342 | None:intergenic | 35.0% |
AAAACCCTACCCATCTTATG+GGG | - | chr1.3:17187559-17187578 | None:intergenic | 40.0% | |
AAAATCCGTCTCAGTAAGGA+AGG | + | chr1.3:17188605-17188624 | MS.gene25198:CDS | 40.0% | |
AACATCTCTCAGGATGTACA+GGG | - | chr1.3:17187008-17187027 | None:intergenic | 40.0% | |
AAGGGAATCTATGAAAGGGT+CGG | - | chr1.3:17187671-17187690 | None:intergenic | 40.0% | |
AATACAAAGCTGAGAGAGGA+GGG | - | chr1.3:17187757-17187776 | None:intergenic | 40.0% | |
ACATCAGCCATGGAATTTCA+GGG | + | chr1.3:17189250-17189269 | MS.gene25198:CDS | 40.0% | |
AGAAGAGGAAATGGATAGCA+TGG | + | chr1.3:17186646-17186665 | MS.gene25198:CDS | 40.0% | |
ATCTTATGGGGATAACACAC+AGG | - | chr1.3:17187547-17187566 | None:intergenic | 40.0% | |
ATGCATGTTCCGTGTATGAT+AGG | - | chr1.3:17187479-17187498 | None:intergenic | 40.0% | |
ATTGCTACCCTGAAATTCCA+TGG | - | chr1.3:17189260-17189279 | None:intergenic | 40.0% | |
CTCTTTAGCAGCCATTGTAA+CGG | + | chr1.3:17189219-17189238 | MS.gene25198:CDS | 40.0% | |
GAAAACCCTACCCATCTTAT+GGG | - | chr1.3:17187560-17187579 | None:intergenic | 40.0% | |
GAACCAAGTGAAATTCCTCT+CGG | + | chr1.3:17188686-17188705 | MS.gene25198:CDS | 40.0% | |
GAATGACAGTAACATCTCTC+AGG | - | chr1.3:17187018-17187037 | None:intergenic | 40.0% | |
GGAATTTCAGGGTAGCAATA+AGG | + | chr1.3:17189261-17189280 | MS.gene25198:CDS | 40.0% | |
GGGATAACACACAGGAAAAT+AGG | - | chr1.3:17187539-17187558 | None:intergenic | 40.0% | |
GTAGTATTAAGCAGGCAGAA+AGG | + | chr1.3:17189143-17189162 | MS.gene25198:CDS | 40.0% | |
GTGTGTTATCCCCATAAGAT+GGG | + | chr1.3:17187547-17187566 | MS.gene25198:intron | 40.0% | |
TAACATCTCTCAGGATGTAC+AGG | - | chr1.3:17187009-17187028 | None:intergenic | 40.0% | |
TATTCTCAAGCAATCTTGCC+TGG | - | chr1.3:17187049-17187068 | None:intergenic | 40.0% | |
TCTCCAGCTTACAAACACAT+GGG | + | chr1.3:17188953-17188972 | MS.gene25198:CDS | 40.0% | |
TCTGAGTAAGCTTAGTTCCA+AGG | + | chr1.3:17188730-17188749 | MS.gene25198:CDS | 40.0% | |
TCTTTAGCAGCCATTGTAAC+GGG | + | chr1.3:17189220-17189239 | MS.gene25198:CDS | 40.0% | |
TGAACAGTTAAAAGGGGTGA+CGG | - | chr1.3:17188758-17188777 | None:intergenic | 40.0% | |
TGACTATTAGAATGGCACGA+GGG | - | chr1.3:17187831-17187850 | None:intergenic | 40.0% | |
TGGAGAGAGAAGATCAATTG+AGG | + | chr1.3:17187616-17187635 | MS.gene25198:intron | 40.0% | |
TGTGTGTTATCCCCATAAGA+TGG | + | chr1.3:17187546-17187565 | MS.gene25198:intron | 40.0% | |
TGTTCAACCTCTTTCAAAGC+AGG | + | chr1.3:17188637-17188656 | MS.gene25198:CDS | 40.0% | |
TTATCCCCATAAGATGGGTA+GGG | + | chr1.3:17187552-17187571 | MS.gene25198:intron | 40.0% | |
TTGGAACTAAGCTTACTCAG+AGG | - | chr1.3:17188731-17188750 | None:intergenic | 40.0% | |
TTTCACAGAGCTATTGCTAC+TGG | + | chr1.3:17188524-17188543 | MS.gene25198:CDS | 40.0% | |
! | GCATAATCCTTCAAGTTCAG+GGG | - | chr1.3:17186985-17187004 | None:intergenic | 40.0% |
! | GGCAACTCCTTTTATATTGG+TGG | - | chr1.3:17187915-17187934 | None:intergenic | 40.0% |
! | GGCATAATCCTTCAAGTTCA+GGG | - | chr1.3:17186986-17187005 | None:intergenic | 40.0% |
! | GTTCATTAGGTTGCATTTGC+TGG | - | chr1.3:17186583-17186602 | None:intergenic | 40.0% |
! | GTTGATTCAAGAAGGAGACA+AGG | + | chr1.3:17189072-17189091 | MS.gene25198:CDS | 40.0% |
! | TGTCTTTTGTCCCGTTACAA+TGG | - | chr1.3:17189233-17189252 | None:intergenic | 40.0% |
! | TTCATGCTTCTTTGGAGATG+GGG | - | chr1.3:17187200-17187219 | None:intergenic | 40.0% |
!! | AATCTGTTTTACTGGTGGTG+CGG | - | chr1.3:17188410-17188429 | None:intergenic | 40.0% |
!! | CATGCATCATTAGAAGCACT+TGG | + | chr1.3:17187492-17187511 | MS.gene25198:intron | 40.0% |
AAAGAGGACCAAACTTCCTC+TGG | - | chr1.3:17189205-17189224 | None:intergenic | 45.0% | |
AACAGGTATACTGGGACAGT+GGG | - | chr1.3:17187785-17187804 | None:intergenic | 45.0% | |
ACATCTCTCAGGATGTACAG+GGG | - | chr1.3:17187007-17187026 | None:intergenic | 45.0% | |
ACCTCCAATCACCATTGTAG+AGG | - | chr1.3:17188820-17188839 | None:intergenic | 45.0% | |
ACCTCTTTCAAAGCAGGAAC+CGG | + | chr1.3:17188643-17188662 | MS.gene25198:CDS | 45.0% | |
ATTGGAGGTCAGATCCGATA+GGG | + | chr1.3:17188831-17188850 | MS.gene25198:CDS | 45.0% | |
CAATACAAAGCTGAGAGAGG+AGG | - | chr1.3:17187758-17187777 | None:intergenic | 45.0% | |
CAGGAACCGGTAGATGAAAT+TGG | + | chr1.3:17188656-17188675 | MS.gene25198:CDS | 45.0% | |
CGACAATACAAAGCTGAGAG+AGG | - | chr1.3:17187761-17187780 | None:intergenic | 45.0% | |
CGTTACAATGGCTGCTAAAG+AGG | - | chr1.3:17189221-17189240 | None:intergenic | 45.0% | |
CTCCAGCTTACAAACACATG+GGG | + | chr1.3:17188954-17188973 | MS.gene25198:CDS | 45.0% | |
CTCTCCAGCTTACAAACACA+TGG | + | chr1.3:17188952-17188971 | MS.gene25198:CDS | 45.0% | |
CTGACTATTAGAATGGCACG+AGG | - | chr1.3:17187832-17187851 | None:intergenic | 45.0% | |
GAACTAAGCTTACTCAGAGG+AGG | - | chr1.3:17188728-17188747 | None:intergenic | 45.0% | |
GACATCAGCCATGGAATTTC+AGG | + | chr1.3:17189249-17189268 | MS.gene25198:CDS | 45.0% | |
GAGCAAGATGATCACACCAT+GGG | + | chr1.3:17188553-17188572 | MS.gene25198:CDS | 45.0% | |
GAGTTCCTTCCTTACTGAGA+CGG | - | chr1.3:17188613-17188632 | None:intergenic | 45.0% | |
GATTCAAGAAGGAGACAAGG+AGG | + | chr1.3:17189075-17189094 | MS.gene25198:CDS | 45.0% | |
GCAACCTCAACAGGTATACT+GGG | - | chr1.3:17187793-17187812 | None:intergenic | 45.0% | |
GCTGAGATACAGAGAGAAAC+TGG | + | chr1.3:17187596-17187615 | MS.gene25198:intron | 45.0% | |
GCTTGAGAATAGAACGTCGT+GGG | + | chr1.3:17187058-17187077 | MS.gene25198:intron | 45.0% | |
GGAAAACCCTACCCATCTTA+TGG | - | chr1.3:17187561-17187580 | None:intergenic | 45.0% | |
GGAAATGGATAGCATGGATG+AGG | + | chr1.3:17186652-17186671 | MS.gene25198:CDS | 45.0% | |
GTTATCCCCATAAGATGGGT+AGG | + | chr1.3:17187551-17187570 | MS.gene25198:intron | 45.0% | |
TCCAGCTTACAAACACATGG+GGG | + | chr1.3:17188955-17188974 | MS.gene25198:CDS | 45.0% | |
TGAGCAAGATGATCACACCA+TGG | + | chr1.3:17188552-17188571 | MS.gene25198:CDS | 45.0% | |
TGCTTGAGAATAGAACGTCG+TGG | + | chr1.3:17187057-17187076 | MS.gene25198:intron | 45.0% | |
TTCACTCTTCGCCTCTACAA+TGG | + | chr1.3:17188806-17188825 | MS.gene25198:CDS | 45.0% | |
TTCATTGGGAAGTCCTGCTA+TGG | + | chr1.3:17189024-17189043 | MS.gene25198:CDS | 45.0% | |
TTCGCCTCTACAATGGTGAT+TGG | + | chr1.3:17188813-17188832 | MS.gene25198:CDS | 45.0% | |
TTGAGTGTGTCCTCAGTGTT+GGG | + | chr1.3:17188869-17188888 | MS.gene25198:CDS | 45.0% | |
TTGTGAAGCAGATGACGCAT+GGG | - | chr1.3:17187257-17187276 | None:intergenic | 45.0% | |
! | GGGCATAATCCTTCAAGTTC+AGG | - | chr1.3:17186987-17187006 | None:intergenic | 45.0% |
! | TGAAGATTCAGCTTTGTCCG+AGG | + | chr1.3:17188303-17188322 | MS.gene25198:CDS | 45.0% |
!! | ACGAACTCCACATTTTGGGA+TGG | - | chr1.3:17186894-17186913 | None:intergenic | 45.0% |
!! | ATCTGTTTTACTGGTGGTGC+GGG | - | chr1.3:17188409-17188428 | None:intergenic | 45.0% |
!! | TTGCGTCGGTTGATTCAAGA+AGG | + | chr1.3:17189064-17189083 | MS.gene25198:CDS | 45.0% |
!!! | GGTGGTGCAACACTTTTTTG+CGG | - | chr1.3:17187897-17187916 | None:intergenic | 45.0% |
!! | TATTATTGAAAATAATAAAA+GGG | - | chr1.3:17187689-17187708 | None:intergenic | 5.0% |
AAATCGGCCCCTGAACTTGA+AGG | + | chr1.3:17186975-17186994 | MS.gene25198:intron | 50.0% | |
ACAACCATGGCTGACCCTAT+CGG | - | chr1.3:17188848-17188867 | None:intergenic | 50.0% | |
ACGAGGGTTCTCACATGACA+TGG | - | chr1.3:17187815-17187834 | None:intergenic | 50.0% | |
AGCTTACTCAGAGGAGGTAG+CGG | - | chr1.3:17188722-17188741 | None:intergenic | 50.0% | |
ATGACCAGCCAGAGGAAGTT+TGG | + | chr1.3:17189194-17189213 | MS.gene25198:CDS | 50.0% | |
CAACAGGTATACTGGGACAG+TGG | - | chr1.3:17187786-17187805 | None:intergenic | 50.0% | |
CAGCTTACAAACACATGGGG+GGG | + | chr1.3:17188957-17188976 | MS.gene25198:CDS | 50.0% | |
CATGACATGGCAACCTCAAC+AGG | - | chr1.3:17187802-17187821 | None:intergenic | 50.0% | |
CCAGCTTACAAACACATGGG+GGG | + | chr1.3:17188956-17188975 | MS.gene25198:CDS | 50.0% | |
CCTAGCTCCATCCCAAAATG+TGG | + | chr1.3:17186884-17186903 | MS.gene25198:intron | 50.0% | |
CTGCTCCAAGCAATGAGTGA+GGG | - | chr1.3:17188927-17188946 | None:intergenic | 50.0% | |
CTGTCCCAGTATACCTGTTG+AGG | + | chr1.3:17187786-17187805 | MS.gene25198:intron | 50.0% | |
GATTGGAGGTCAGATCCGAT+AGG | + | chr1.3:17188830-17188849 | MS.gene25198:CDS | 50.0% | |
GCAGAATGCTTTGACCACCA+TGG | - | chr1.3:17188581-17188600 | None:intergenic | 50.0% | |
GCCTCTACAATGGTGATTGG+AGG | + | chr1.3:17188816-17188835 | MS.gene25198:CDS | 50.0% | |
GGACACACTCAACACAACCA+TGG | - | chr1.3:17188861-17188880 | None:intergenic | 50.0% | |
GGCAACCTCAACAGGTATAC+TGG | - | chr1.3:17187794-17187813 | None:intergenic | 50.0% | |
GGGACAAAAGACATCAGCCA+TGG | + | chr1.3:17189240-17189259 | MS.gene25198:CDS | 50.0% | |
GTTGAGTGTGTCCTCAGTGT+TGG | + | chr1.3:17188868-17188887 | MS.gene25198:CDS | 50.0% | |
GTTGTGAAGCAGATGACGCA+TGG | - | chr1.3:17187258-17187277 | None:intergenic | 50.0% | |
TGATCACACCATGGGATCCA+TGG | + | chr1.3:17188561-17188580 | MS.gene25198:CDS | 50.0% | |
TTTGACCACCATGGATCCCA+TGG | - | chr1.3:17188572-17188591 | None:intergenic | 50.0% | |
! | ATGGGTAGGGTTTTCCAGAG+AGG | + | chr1.3:17187565-17187584 | MS.gene25198:intron | 50.0% |
! | GTTTTCCAGAGAGGACTGAC+TGG | + | chr1.3:17187574-17187593 | MS.gene25198:intron | 50.0% |
! | TAAAAGGGGTGACGGTTCCT+TGG | - | chr1.3:17188750-17188769 | None:intergenic | 50.0% |
! | TTCAAGTTCAGGGGCCGATT+TGG | - | chr1.3:17186976-17186995 | None:intergenic | 50.0% |
!! | ACCGGTTCCTGCTTTGAAAG+AGG | - | chr1.3:17188647-17188666 | None:intergenic | 50.0% |
!! | TCTGTTTTACTGGTGGTGCG+GGG | - | chr1.3:17188408-17188427 | None:intergenic | 50.0% |
!!! | CCACATTTTGGGATGGAGCT+AGG | - | chr1.3:17186887-17186906 | None:intergenic | 50.0% |
AGATCCGATAGGGTCAGCCA+TGG | + | chr1.3:17188841-17188860 | MS.gene25198:CDS | 55.0% | |
AGGACCAAACTTCCTCTGGC+TGG | - | chr1.3:17189201-17189220 | None:intergenic | 55.0% | |
AGGGCTTCCAGTACAGTCTC+TGG | - | chr1.3:17188908-17188927 | None:intergenic | 55.0% | |
CAACCGACGCAAGTCGCAAA+GGG | - | chr1.3:17189056-17189075 | None:intergenic | 55.0% | |
CCCCCCATGTGTTTGTAAGC+TGG | - | chr1.3:17188959-17188978 | None:intergenic | 55.0% | |
CCTCACTCATTGCTTGGAGC+AGG | + | chr1.3:17188925-17188944 | MS.gene25198:CDS | 55.0% | |
CCTGCTCCAAGCAATGAGTG+AGG | - | chr1.3:17188928-17188947 | None:intergenic | 55.0% | |
GAGGCGAAGAGTGAAGCAGT+AGG | - | chr1.3:17188801-17188820 | None:intergenic | 55.0% | |
GGAAGCCCTCACTCATTGCT+TGG | + | chr1.3:17188919-17188938 | MS.gene25198:CDS | 55.0% | |
GGGCCGAGAGGAATTTCACT+TGG | - | chr1.3:17188692-17188711 | None:intergenic | 55.0% | |
TCAACCGACGCAAGTCGCAA+AGG | - | chr1.3:17189057-17189076 | None:intergenic | 55.0% | |
TCACACCATGGGATCCATGG+TGG | + | chr1.3:17188564-17188583 | MS.gene25198:CDS | 55.0% | |
TGAAAGGGTCGGATGAGCAG+CGG | - | chr1.3:17187660-17187679 | None:intergenic | 55.0% | |
TTGGGTTCATGACCAGCCAG+AGG | + | chr1.3:17189186-17189205 | MS.gene25198:CDS | 55.0% | |
! | AGCTTTGTCCGAGGAGACGA+TGG | + | chr1.3:17188312-17188331 | MS.gene25198:CDS | 55.0% |
! | CAAAGGGCACACACCATAGC+AGG | - | chr1.3:17189040-17189059 | None:intergenic | 55.0% |
! | CTTTGGAGATGGGGTGTTCC+TGG | - | chr1.3:17187191-17187210 | None:intergenic | 55.0% |
! | GTGTCCTCAGTGTTGGGTCA+CGG | + | chr1.3:17188875-17188894 | MS.gene25198:CDS | 55.0% |
!! | AAGTTCAGGGGCCGATTTGG+AGG | - | chr1.3:17186973-17186992 | None:intergenic | 55.0% |
!! | AGAGGAGGTAGCGGAACTTC+AGG | - | chr1.3:17188713-17188732 | None:intergenic | 55.0% |
!! | CTGTTTTACTGGTGGTGCGG+GGG | - | chr1.3:17188407-17188426 | None:intergenic | 55.0% |
!! | GAGGAGGTAGCGGAACTTCA+GGG | - | chr1.3:17188712-17188731 | None:intergenic | 55.0% |
CTCAGCCAGTCAGTCCTCTC+TGG | - | chr1.3:17187582-17187601 | None:intergenic | 60.0% | |
GAAAGGGTCGGATGAGCAGC+GGG | - | chr1.3:17187659-17187678 | None:intergenic | 60.0% | |
GTGCCCTTTGCGACTTGCGT+CGG | + | chr1.3:17189050-17189069 | MS.gene25198:CDS | 60.0% | |
TGGGCAGCCAGAGACTGTAC+TGG | + | chr1.3:17188898-17188917 | MS.gene25198:CDS | 60.0% | |
! | CCTCAGTGTTGGGTCACGGT+GGG | + | chr1.3:17188879-17188898 | MS.gene25198:CDS | 60.0% |
! | TCCTCAGTGTTGGGTCACGG+TGG | + | chr1.3:17188878-17188897 | MS.gene25198:CDS | 60.0% |
AGCGGAACTTCAGGGCCGAG+AGG | - | chr1.3:17188704-17188723 | None:intergenic | 65.0% | |
CACATGGGGGGGCTGCAGTT+CGG | + | chr1.3:17188968-17188987 | MS.gene25198:CDS | 65.0% | |
CCCACCGTGACCCAACACTG+AGG | - | chr1.3:17188882-17188901 | None:intergenic | 65.0% | |
GGGGGGCTGCAGTTCGGTTT+AGG | + | chr1.3:17188974-17188993 | MS.gene25198:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 17186554 | 17189345 | 17186554 | ID=MS.gene25198 |
chr1.3 | mRNA | 17186554 | 17189345 | 17186554 | ID=MS.gene25198.t1;Parent=MS.gene25198 |
chr1.3 | exon | 17186554 | 17186677 | 17186554 | ID=MS.gene25198.t1.exon1;Parent=MS.gene25198.t1 |
chr1.3 | CDS | 17186554 | 17186677 | 17186554 | ID=cds.MS.gene25198.t1;Parent=MS.gene25198.t1 |
chr1.3 | exon | 17188299 | 17188349 | 17188299 | ID=MS.gene25198.t1.exon2;Parent=MS.gene25198.t1 |
chr1.3 | CDS | 17188299 | 17188349 | 17188299 | ID=cds.MS.gene25198.t1;Parent=MS.gene25198.t1 |
chr1.3 | exon | 17188477 | 17189345 | 17188477 | ID=MS.gene25198.t1.exon3;Parent=MS.gene25198.t1 |
chr1.3 | CDS | 17188477 | 17189345 | 17188477 | ID=cds.MS.gene25198.t1;Parent=MS.gene25198.t1 |
Gene Sequence |
Protein sequence |