Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26898.t1 | XP_013469853.1 | 95.6 | 363 | 16 | 0 | 1 | 363 | 1 | 363 | 1.30E-198 | 702.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26898.t1 | A0A072VQG9 | 95.6 | 363 | 16 | 0 | 1 | 363 | 1 | 363 | 9.1e-199 | 702.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene26898 | 0.806683 | 7.30E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene26898 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene054056 | MS.gene26898 | 0.82508 | 5.70E-54 | -1.69E-46 |
| MS.gene055942 | MS.gene26898 | 0.823933 | 1.06E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene26898 | -0.809059 | 2.28E-50 | -1.69E-46 |
| MS.gene056761 | MS.gene26898 | 0.813971 | 1.95E-51 | -1.69E-46 |
| MS.gene058109 | MS.gene26898 | 0.826823 | 2.20E-54 | -1.69E-46 |
| MS.gene058111 | MS.gene26898 | 0.807333 | 5.32E-50 | -1.69E-46 |
| MS.gene058268 | MS.gene26898 | 0.817948 | 2.53E-52 | -1.69E-46 |
| MS.gene058628 | MS.gene26898 | 0.805839 | 1.10E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene26898 | -0.810792 | 9.67E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26898.t1 | MTR_1g103870 | 95.592 | 363 | 16 | 0 | 1 | 363 | 1 | 363 | 0.0 | 719 |
| MS.gene26898.t1 | MTR_1g103900 | 81.543 | 363 | 66 | 1 | 1 | 362 | 1 | 363 | 0.0 | 608 |
| MS.gene26898.t1 | MTR_1g030720 | 80.220 | 364 | 71 | 1 | 1 | 363 | 1 | 364 | 0.0 | 598 |
| MS.gene26898.t1 | MTR_1g030720 | 80.000 | 345 | 68 | 1 | 1 | 344 | 1 | 345 | 0.0 | 565 |
| MS.gene26898.t1 | MTR_1g103870 | 95.896 | 268 | 11 | 0 | 1 | 268 | 1 | 268 | 0.0 | 530 |
| MS.gene26898.t1 | MTR_1g030710 | 59.447 | 217 | 36 | 1 | 52 | 268 | 1 | 165 | 4.51e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26898.t1 | AT3G54970 | 48.209 | 363 | 170 | 7 | 1 | 358 | 1 | 350 | 3.02e-106 | 316 |
| MS.gene26898.t1 | AT3G54970 | 49.038 | 312 | 144 | 6 | 52 | 358 | 1 | 302 | 6.78e-88 | 267 |
| MS.gene26898.t1 | AT3G54970 | 49.333 | 300 | 135 | 6 | 1 | 296 | 1 | 287 | 5.92e-86 | 262 |
| MS.gene26898.t1 | AT3G54970 | 49.169 | 301 | 136 | 6 | 1 | 297 | 1 | 288 | 7.75e-86 | 262 |
| MS.gene26898.t1 | AT3G54970 | 46.324 | 272 | 129 | 6 | 1 | 268 | 1 | 259 | 3.57e-68 | 215 |
| MS.gene26898.t1 | AT3G54970 | 50.400 | 250 | 110 | 5 | 52 | 297 | 1 | 240 | 1.78e-67 | 213 |
Find 73 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTGTTACTGGTAATT+TGG | 0.120632 | 1.4:-80338663 | MS.gene26898:CDS |
| AGTTTCCAAGCTGGCAAATT+TGG | 0.216666 | 1.4:+80338776 | None:intergenic |
| CATGTACATATGTTACTTAT+TGG | 0.218165 | 1.4:+80336074 | None:intergenic |
| ACTTATGTTCCTCCTCAATT+TGG | 0.238078 | 1.4:-80338566 | MS.gene26898:CDS |
| TTCCTCCTCAATTTGGTATT+CGG | 0.238577 | 1.4:-80338559 | MS.gene26898:CDS |
| GTGCTTCATGCTTGATGTTT+TGG | 0.241820 | 1.4:-80338904 | MS.gene26898:CDS |
| GGGAAAGCCCCGTCTGATTA+TGG | 0.267527 | 1.4:-80337533 | MS.gene26898:CDS |
| CATTTAGCTGTTGGCGGCTA+TGG | 0.287537 | 1.4:-80338524 | MS.gene26898:CDS |
| ATCAGTGATGGTGTTCTTCC+AGG | 0.297425 | 1.4:-80337476 | MS.gene26898:CDS |
| ATCATTACAACTCTTGTTAC+TGG | 0.301146 | 1.4:-80338671 | MS.gene26898:CDS |
| TCCTCCTCAATTTGGTATTC+GGG | 0.303663 | 1.4:-80338558 | MS.gene26898:CDS |
| GCAACATGCAGATAGTATTC+AGG | 0.308908 | 1.4:-80336580 | MS.gene26898:CDS |
| CATGGTCAAAACATGAAATC+TGG | 0.311226 | 1.4:-80337100 | MS.gene26898:CDS |
| GGTCCATGATATATCCTTCC+AGG | 0.320534 | 1.4:+80336524 | None:intergenic |
| GACACTTGTTAACGATTCAT+TGG | 0.337668 | 1.4:-80338744 | MS.gene26898:CDS |
| ACTAGTTGGCGTATTATTCC+TGG | 0.368986 | 1.4:+80337458 | None:intergenic |
| CAATTTGGTATTCGGGGAAA+TGG | 0.396980 | 1.4:-80338551 | MS.gene26898:CDS |
| TGTCACCAAATTTGCCAGCT+TGG | 0.405069 | 1.4:-80338781 | MS.gene26898:CDS |
| TAGGATTCGGTTTCCGATGA+TGG | 0.405731 | 1.4:-80337554 | MS.gene26898:CDS |
| TTTAAGATATCTCTTCAGTA+AGG | 0.413390 | 1.4:-80339560 | MS.gene26898:CDS |
| GGATATATCATGGACCAAAA+AGG | 0.416592 | 1.4:-80336517 | MS.gene26898:CDS |
| TGCATTTGTGCAGGGTATGC+AGG | 0.419831 | 1.4:-80337157 | MS.gene26898:intron |
| GAACTGTTGCTGTCTTATAA+TGG | 0.422416 | 1.4:-80338248 | MS.gene26898:CDS |
| GGTTATGGAGAAAGCAACTT+TGG | 0.430081 | 1.4:-80336105 | MS.gene26898:CDS |
| CAGCTGCAAAATATTCAGAT+TGG | 0.435154 | 1.4:-80338490 | MS.gene26898:CDS |
| GTCTTTCTTGAAGCTCATCC+AGG | 0.445380 | 1.4:-80339499 | MS.gene26898:intron |
| AGCTGCAAAATATTCAGATT+GGG | 0.452477 | 1.4:-80338489 | MS.gene26898:CDS |
| TCTTGTTACTGGTAATTTGG+AGG | 0.471836 | 1.4:-80338660 | MS.gene26898:CDS |
| GGAAGAACACCATCACTGAT+AGG | 0.475333 | 1.4:+80337479 | None:intergenic |
| CAAAATATTCAGATTGGGTA+AGG | 0.485171 | 1.4:-80338484 | MS.gene26898:intron |
| ATTTAGCTGTTGGCGGCTAT+GGG | 0.496506 | 1.4:-80338523 | MS.gene26898:CDS |
| GAGTAAATGCAGGATGGACC+AGG | 0.497705 | 1.4:-80336426 | MS.gene26898:intron |
| AGGATTCGGTTTCCGATGAT+GGG | 0.501749 | 1.4:-80337553 | MS.gene26898:CDS |
| GATGATCACAACTTTAATCC+AGG | 0.513020 | 1.4:-80336403 | MS.gene26898:intron |
| GGTGAACATTTAGCTGTTGG+CGG | 0.513162 | 1.4:-80338530 | MS.gene26898:CDS |
| ATGGTCAAAACATGAAATCT+GGG | 0.513865 | 1.4:-80337099 | MS.gene26898:CDS |
| TGTTAACGATTCATTGGAGA+AGG | 0.518710 | 1.4:-80338738 | MS.gene26898:CDS |
| ATGGAGAAAGCAACTTTGGA+AGG | 0.520760 | 1.4:-80336101 | MS.gene26898:CDS |
| AAACCTGGAAGGATATATCA+TGG | 0.523522 | 1.4:-80336527 | MS.gene26898:CDS |
| AATGGTGAACATTTAGCTGT+TGG | 0.538377 | 1.4:-80338533 | MS.gene26898:CDS |
| TGGGCTGATTGCCATTCTGT+TGG | 0.539164 | 1.4:+80336555 | None:intergenic |
| GTCGAGAAGTTGCTCCATCA+TGG | 0.539467 | 1.4:-80337118 | MS.gene26898:CDS |
| ATGCAGGATTAGGAAGACTC+TGG | 0.555761 | 1.4:-80338297 | MS.gene26898:intron |
| TGCAATGCAAGTTTCCAAGC+TGG | 0.556576 | 1.4:+80338767 | None:intergenic |
| AGCAACAGTTCTGTCACTGA+TGG | 0.558246 | 1.4:+80338260 | None:intergenic |
| TTAAGATATCTCTTCAGTAA+GGG | 0.558486 | 1.4:-80339559 | MS.gene26898:CDS |
| TTTCCCCGAATACCAAATTG+AGG | 0.562586 | 1.4:+80338554 | None:intergenic |
| AGATATCTTAAACTTGACAT+TGG | 0.564311 | 1.4:+80339571 | None:intergenic |
| AACCATACTCAAGTACTAGT+TGG | 0.567061 | 1.4:+80337444 | None:intergenic |
| CAATAAGTAACATATGTACA+TGG | 0.567230 | 1.4:-80336073 | MS.gene26898:CDS |
| AGACGGGGCTTTCCCATCAT+CGG | 0.568285 | 1.4:+80337541 | None:intergenic |
| ATTAAAGTTGTGATCATCCC+TGG | 0.570286 | 1.4:+80336408 | None:intergenic |
| ATGTCATTGCAGATAGCTTG+AGG | 0.570583 | 1.4:-80336608 | MS.gene26898:intron |
| TGCAGGGTATGCAGGAGTGA+AGG | 0.571410 | 1.4:-80337149 | MS.gene26898:intron |
| AATCAGCCCATTCTAAAACC+TGG | 0.574405 | 1.4:-80336542 | MS.gene26898:CDS |
| GTATTCAGGTTCCAACAGAA+TGG | 0.575665 | 1.4:-80336566 | MS.gene26898:CDS |
| TAGCTGTTGGCGGCTATGGG+AGG | 0.577741 | 1.4:-80338520 | MS.gene26898:CDS |
| AACAGTTCTGTCACTGATGG+AGG | 0.583762 | 1.4:+80338263 | None:intergenic |
| CCTCCTCAATTTGGTATTCG+GGG | 0.594882 | 1.4:-80338557 | MS.gene26898:CDS |
| AGCCCATTCTAAAACCTGGA+AGG | 0.604355 | 1.4:-80336538 | MS.gene26898:CDS |
| GAACATCTGAGGTGTGTGAA+AGG | 0.607334 | 1.4:+80339533 | None:intergenic |
| CAGACAGCTCCTATCAGTGA+TGG | 0.620267 | 1.4:-80337488 | MS.gene26898:CDS |
| ATGGAGCAACTTCTCGACAT+GGG | 0.621778 | 1.4:+80337123 | None:intergenic |
| GATGGAGCAACTTCTCGACA+TGG | 0.624453 | 1.4:+80337122 | None:intergenic |
| TCAGATTTAAATATGAGCTG+AGG | 0.626076 | 1.4:+80338827 | None:intergenic |
| AATGGTGATCAAATACTCGA+AGG | 0.638330 | 1.4:-80338230 | MS.gene26898:CDS |
| GCTGGCAAATTTGGTGACAA+TGG | 0.641423 | 1.4:+80338785 | None:intergenic |
| CCCCGAATACCAAATTGAGG+AGG | 0.643632 | 1.4:+80338557 | None:intergenic |
| AGTAAATGCAGGATGGACCA+GGG | 0.672480 | 1.4:-80336425 | MS.gene26898:intron |
| ACACACCTCAGATGTTCCTG+CGG | 0.686527 | 1.4:-80339527 | MS.gene26898:CDS |
| TTTATTTCCATAATCAGACG+GGG | 0.699217 | 1.4:+80337526 | None:intergenic |
| GTCAAAACATGAAATCTGGG+AGG | 0.703539 | 1.4:-80337096 | MS.gene26898:CDS |
| TGCATGTGAGACTATATCTG+AGG | 0.711093 | 1.4:-80338630 | MS.gene26898:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTTTATACTTATTTATA+TGG | - | chr1.4:80338016-80338035 | MS.gene26898:intron | 10.0% |
| !!! | TAATTTATTTCTATAACTTT+TGG | + | chr1.4:80338387-80338406 | None:intergenic | 10.0% |
| !!! | TTTATTTTATCTTTTGTTAT+TGG | - | chr1.4:80336387-80336406 | MS.gene26898:intron | 10.0% |
| !! | TAACTTATATTAGAACAATT+TGG | - | chr1.4:80336363-80336382 | MS.gene26898:intron | 15.0% |
| !! | TTAATCATTATAAATAGGTA+TGG | + | chr1.4:80337708-80337727 | None:intergenic | 15.0% |
| !! | TTGTAAATAACATAAAATTC+TGG | + | chr1.4:80338301-80338320 | None:intergenic | 15.0% |
| !!! | GAATTTTATGTTATTTACAA+TGG | - | chr1.4:80338301-80338320 | MS.gene26898:intron | 15.0% |
| !!! | GGTTTTTAATCATTATAAAT+AGG | + | chr1.4:80337713-80337732 | None:intergenic | 15.0% |
| !! | AAATAACCAAACTTGTAAAT+AGG | + | chr1.4:80338884-80338903 | None:intergenic | 20.0% |
| !! | AAGTAGTAAATAAATTTACC+TGG | + | chr1.4:80339256-80339275 | None:intergenic | 20.0% |
| !! | AGTAAATTCCTACTATTATT+TGG | - | chr1.4:80337772-80337791 | MS.gene26898:intron | 20.0% |
| !! | ATACTATAAAGATGTTTCAT+TGG | + | chr1.4:80338412-80338431 | None:intergenic | 20.0% |
| !! | ATTGTTAGAATATTAAAGCA+TGG | + | chr1.4:80337621-80337640 | None:intergenic | 20.0% |
| !! | GTAAATTCCTACTATTATTT+GGG | - | chr1.4:80337773-80337792 | MS.gene26898:intron | 20.0% |
| !!! | ACAAAATTTGAGATAATTAC+AGG | + | chr1.4:80336510-80336529 | None:intergenic | 20.0% |
| !!! | ATCAACTTTTTTTCTTTTTC+AGG | - | chr1.4:80336682-80336701 | MS.gene26898:intron | 20.0% |
| !!! | CAAAATTTGAGATAATTACA+GGG | + | chr1.4:80336509-80336528 | None:intergenic | 20.0% |
| !!! | GTTTTATAATTGCAAATGTT+GGG | + | chr1.4:80339484-80339503 | None:intergenic | 20.0% |
| !!! | TTCAAATTGTTTTGGATTAA+TGG | - | chr1.4:80337739-80337758 | MS.gene26898:intron | 20.0% |
| !!! | TTTATTGGTTTTGTTAACTT+GGG | - | chr1.4:80339002-80339021 | MS.gene26898:intron | 20.0% |
| !!! | TTTTTATTTCCATAATCAGA+CGG | + | chr1.4:80338117-80338136 | None:intergenic | 20.0% |
| ! | AATATGACCCAAATAATAGT+AGG | + | chr1.4:80337783-80337802 | None:intergenic | 25.0% |
| ! | CAAGTTAACAAAACCAATAA+AGG | + | chr1.4:80339003-80339022 | None:intergenic | 25.0% |
| ! | CAATAAGTAACATATGTACA+TGG | - | chr1.4:80339565-80339584 | MS.gene26898:CDS | 25.0% |
| ! | CCAAAACAATTTGAAGATAA+TGG | + | chr1.4:80337734-80337753 | None:intergenic | 25.0% |
| ! | GAAATAAGTTGTACAGATTA+TGG | + | chr1.4:80336307-80336326 | None:intergenic | 25.0% |
| ! | GTAATTACAGCATATTAATG+TGG | + | chr1.4:80338798-80338817 | None:intergenic | 25.0% |
| ! | TAATAGCATATCAAGACTAT+TGG | - | chr1.4:80337828-80337847 | MS.gene26898:intron | 25.0% |
| ! | TTAAGATATCTCTTCAGTAA+GGG | - | chr1.4:80336079-80336098 | MS.gene26898:CDS | 25.0% |
| ! | TTAAGGTGGTAAATTTATAC+TGG | - | chr1.4:80339147-80339166 | MS.gene26898:intron | 25.0% |
| !! | ACTACTTTCACATTTTGAAT+TGG | - | chr1.4:80339269-80339288 | MS.gene26898:intron | 25.0% |
| !! | AGAAAATTAGCACTGAAATT+TGG | + | chr1.4:80337266-80337285 | None:intergenic | 25.0% |
| !! | CATGTACATATGTTACTTAT+TGG | + | chr1.4:80339567-80339586 | None:intergenic | 25.0% |
| !! | CCATTATCTTCAAATTGTTT+TGG | - | chr1.4:80337731-80337750 | MS.gene26898:intron | 25.0% |
| !! | CTACTTTCACATTTTGAATT+GGG | - | chr1.4:80339270-80339289 | MS.gene26898:intron | 25.0% |
| !! | CTCAACAAAAGTATAAAATC+CGG | - | chr1.4:80338331-80338350 | MS.gene26898:intron | 25.0% |
| !! | CTTTTCCTGATTAAAACAAA+AGG | + | chr1.4:80339514-80339533 | None:intergenic | 25.0% |
| !! | TCAACAAAAGTATAAAATCC+GGG | - | chr1.4:80338332-80338351 | MS.gene26898:intron | 25.0% |
| !! | TTCTGGTAAATTTTTCTAGA+AGG | + | chr1.4:80338284-80338303 | None:intergenic | 25.0% |
| !! | TTTAAGATATCTCTTCAGTA+AGG | - | chr1.4:80336078-80336097 | MS.gene26898:CDS | 25.0% |
| !! | TTTTAATCAGGAAAAGGTTA+TGG | - | chr1.4:80339518-80339537 | MS.gene26898:CDS | 25.0% |
| !!! | AAATGCCTTTTGTTTTAATC+AGG | - | chr1.4:80339506-80339525 | MS.gene26898:CDS | 25.0% |
| !!! | ACAAAAGTGCATGTTTTTAA+CGG | + | chr1.4:80336564-80336583 | None:intergenic | 25.0% |
| !!! | ATGCACTTTTGTAATTTGTA+CGG | - | chr1.4:80336572-80336591 | MS.gene26898:CDS | 25.0% |
| !!! | CTTTATTGGTTTTGTTAACT+TGG | - | chr1.4:80339001-80339020 | MS.gene26898:intron | 25.0% |
| !!! | CTTTTGTTTTAATCAGGAAA+AGG | - | chr1.4:80339512-80339531 | MS.gene26898:CDS | 25.0% |
| !!! | GATTAAAACAAAAGGCATTT+CGG | + | chr1.4:80339506-80339525 | None:intergenic | 25.0% |
| !!! | GGTTTTATAATTGCAAATGT+TGG | + | chr1.4:80339485-80339504 | None:intergenic | 25.0% |
| !!! | TAGAAAATAAAAGCACTAAC+AGG | - | chr1.4:80338431-80338450 | MS.gene26898:intron | 25.0% |
| !!! | TCTGGTAAATTTTTCTAGAA+GGG | + | chr1.4:80338283-80338302 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTTAGTCTTACTG+AGG | - | chr1.4:80338602-80338621 | MS.gene26898:CDS | 25.0% |
| !!! | TTTTAGGTTCAAATCTTATG+AGG | + | chr1.4:80337572-80337591 | None:intergenic | 25.0% |
| !!! | TTTTATTTCCATAATCAGAC+GGG | + | chr1.4:80338116-80338135 | None:intergenic | 25.0% |
| AACTCAAATTAACCAGAGAA+AGG | + | chr1.4:80336226-80336245 | None:intergenic | 30.0% | |
| AACTCTTGTTACTGGTAATT+TGG | - | chr1.4:80336975-80336994 | MS.gene26898:intron | 30.0% | |
| AACTTTGCAAATTGTTCGTT+TGG | - | chr1.4:80338634-80338653 | MS.gene26898:CDS | 30.0% | |
| ACTCAAATTAACCAGAGAAA+GGG | + | chr1.4:80336225-80336244 | None:intergenic | 30.0% | |
| AGCTGCAAAATATTCAGATT+GGG | - | chr1.4:80337149-80337168 | MS.gene26898:intron | 30.0% | |
| AGTTGCATCTAGTAATTTGA+AGG | + | chr1.4:80337311-80337330 | None:intergenic | 30.0% | |
| ATCATTACAACTCTTGTTAC+TGG | - | chr1.4:80336967-80336986 | MS.gene26898:intron | 30.0% | |
| ATGGACCAAAAAGGAATTTA+AGG | - | chr1.4:80339130-80339149 | MS.gene26898:intron | 30.0% | |
| ATGGTCAAAACATGAAATCT+GGG | - | chr1.4:80338539-80338558 | MS.gene26898:CDS | 30.0% | |
| CAAAATATTCAGATTGGGTA+AGG | - | chr1.4:80337154-80337173 | MS.gene26898:intron | 30.0% | |
| TACTGACCTATTTACAAGTT+TGG | - | chr1.4:80338875-80338894 | MS.gene26898:CDS | 30.0% | |
| TCAGATTTAAATATGAGCTG+AGG | + | chr1.4:80336814-80336833 | None:intergenic | 30.0% | |
| TTCTCAATTTGAGTAAATGC+AGG | - | chr1.4:80339202-80339221 | MS.gene26898:intron | 30.0% | |
| TTTAAATGTGTCGAAATCCT+CGG | + | chr1.4:80338729-80338748 | None:intergenic | 30.0% | |
| TTTATTTCCATAATCAGACG+GGG | + | chr1.4:80338115-80338134 | None:intergenic | 30.0% | |
| TTTGGTTAGTAACCATATGT+GGG | - | chr1.4:80337541-80337560 | MS.gene26898:CDS | 30.0% | |
| ! | AATTTGTACGGACTAAAAAG+AGG | - | chr1.4:80336584-80336603 | MS.gene26898:CDS | 30.0% |
| ! | ATCGTTTCCTGTTTCATTTT+AGG | - | chr1.4:80338065-80338084 | MS.gene26898:intron | 30.0% |
| ! | TACCACCTTAAATTCCTTTT+TGG | + | chr1.4:80339138-80339157 | None:intergenic | 30.0% |
| !! | CTGGTAAATTTTTCTAGAAG+GGG | + | chr1.4:80338282-80338301 | None:intergenic | 30.0% |
| !! | GGGTTTACAAAGTATTTTGT+TGG | + | chr1.4:80336205-80336224 | None:intergenic | 30.0% |
| !! | TTGAAAGTATCTAAAGAACC+TGG | + | chr1.4:80336160-80336179 | None:intergenic | 30.0% |
| !!! | ATTTCATGTTTTGACCATGA+TGG | + | chr1.4:80338537-80338556 | None:intergenic | 30.0% |
| !!! | TCCTGTTTCATTTTAGGATT+CGG | - | chr1.4:80338071-80338090 | MS.gene26898:intron | 30.0% |
| AAACCTGGAAGGATATATCA+TGG | - | chr1.4:80339111-80339130 | MS.gene26898:intron | 35.0% | |
| AACCATACTCAAGTACTAGT+TGG | + | chr1.4:80338197-80338216 | None:intergenic | 35.0% | |
| AAGTTAGCTGGAATAGTTGT+AGG | + | chr1.4:80337670-80337689 | None:intergenic | 35.0% | |
| AATGGTGAACATTTAGCTGT+TGG | - | chr1.4:80337105-80337124 | MS.gene26898:CDS | 35.0% | |
| AATGGTGATCAAATACTCGA+AGG | - | chr1.4:80337408-80337427 | MS.gene26898:intron | 35.0% | |
| ACCGAATCCTAAAATGAAAC+AGG | + | chr1.4:80338075-80338094 | None:intergenic | 35.0% | |
| ACTAGTACTTGAGTATGGTT+TGG | - | chr1.4:80338197-80338216 | MS.gene26898:CDS | 35.0% | |
| ACTTATGTTCCTCCTCAATT+TGG | - | chr1.4:80337072-80337091 | MS.gene26898:intron | 35.0% | |
| AGAAACTGAAAAGTGGTTAC+AGG | + | chr1.4:80336541-80336560 | None:intergenic | 35.0% | |
| AGGTTCAGAGACTAAACAAA+AGG | - | chr1.4:80336604-80336623 | MS.gene26898:intron | 35.0% | |
| ATTAAAGTTGTGATCATCCC+TGG | + | chr1.4:80339233-80339252 | None:intergenic | 35.0% | |
| CAATGACATTGTATGTCAGT+TGG | - | chr1.4:80338906-80338925 | MS.gene26898:CDS | 35.0% | |
| CAATTTGAGTAAATGCAGGA+TGG | - | chr1.4:80339206-80339225 | MS.gene26898:intron | 35.0% | |
| CACATATGGTTACTAACCAA+AGG | + | chr1.4:80337542-80337561 | None:intergenic | 35.0% | |
| CAGCTGCAAAATATTCAGAT+TGG | - | chr1.4:80337148-80337167 | MS.gene26898:intron | 35.0% | |
| CATGGTCAAAACATGAAATC+TGG | - | chr1.4:80338538-80338557 | MS.gene26898:CDS | 35.0% | |
| CTAAAAGCTGTTGCTAATCA+TGG | - | chr1.4:80337586-80337605 | MS.gene26898:intron | 35.0% | |
| CTAAAATTCTCTGTGTCCTT+TGG | - | chr1.4:80337523-80337542 | MS.gene26898:CDS | 35.0% | |
| CTCTGCTTGAATAAACAACT+TGG | + | chr1.4:80336468-80336487 | None:intergenic | 35.0% | |
| CTGAAATTTGGTATCGTCAA+AGG | + | chr1.4:80337254-80337273 | None:intergenic | 35.0% | |
| CTTTGGTTAGTAACCATATG+TGG | - | chr1.4:80337540-80337559 | MS.gene26898:CDS | 35.0% | |
| GAAACTGAAAAGTGGTTACA+GGG | + | chr1.4:80336540-80336559 | None:intergenic | 35.0% | |
| GAACTGTTGCTGTCTTATAA+TGG | - | chr1.4:80337390-80337409 | MS.gene26898:intron | 35.0% | |
| GACCAAAAAGGAATTTAAGG+TGG | - | chr1.4:80339133-80339152 | MS.gene26898:intron | 35.0% | |
| GATAAAATAAGCTCACCTTG+CGG | + | chr1.4:80337461-80337480 | None:intergenic | 35.0% | |
| GATGATCACAACTTTAATCC+AGG | - | chr1.4:80339235-80339254 | MS.gene26898:intron | 35.0% | |
| GATTTCAGACTCTCCTTTAT+TGG | - | chr1.4:80338987-80339006 | MS.gene26898:intron | 35.0% | |
| GGATATATCATGGACCAAAA+AGG | - | chr1.4:80339121-80339140 | MS.gene26898:intron | 35.0% | |
| GTAAATGGACAGATGCATAA+TGG | + | chr1.4:80339335-80339354 | None:intergenic | 35.0% | |
| GTCAAAGGCAGTAACTTATA+TGG | + | chr1.4:80337239-80337258 | None:intergenic | 35.0% | |
| TACAAAATAGTATTCTCGCG+AGG | + | chr1.4:80338825-80338844 | None:intergenic | 35.0% | |
| TACAACTATTCCAGCTAACT+TGG | - | chr1.4:80337669-80337688 | MS.gene26898:intron | 35.0% | |
| TACTGCTAGATCGAAATCAA+TGG | - | chr1.4:80338703-80338722 | MS.gene26898:CDS | 35.0% | |
| TACTTTGTAAACCCTTTCTC+TGG | - | chr1.4:80336211-80336230 | MS.gene26898:intron | 35.0% | |
| TATGAGGTAATTCCCACATA+TGG | + | chr1.4:80337556-80337575 | None:intergenic | 35.0% | |
| TATGCATCTGTCCATTTACA+CGG | - | chr1.4:80339336-80339355 | MS.gene26898:intron | 35.0% | |
| TCTTGTTACTGGTAATTTGG+AGG | - | chr1.4:80336978-80336997 | MS.gene26898:intron | 35.0% | |
| TGAAATAAGCTTATGCGTCA+TGG | - | chr1.4:80337990-80338009 | MS.gene26898:intron | 35.0% | |
| TGTTAACGATTCATTGGAGA+AGG | - | chr1.4:80336900-80336919 | MS.gene26898:intron | 35.0% | |
| TTAACGGAGAAACTGAAAAG+TGG | + | chr1.4:80336548-80336567 | None:intergenic | 35.0% | |
| TTCCTCCTCAATTTGGTATT+CGG | - | chr1.4:80337079-80337098 | MS.gene26898:intron | 35.0% | |
| ! | CACATTTTGAATTGGGACTT+GGG | - | chr1.4:80339277-80339296 | MS.gene26898:intron | 35.0% |
| ! | CATGATTAGCAACAGCTTTT+AGG | + | chr1.4:80337588-80337607 | None:intergenic | 35.0% |
| ! | GACACTTGTTAACGATTCAT+TGG | - | chr1.4:80336894-80336913 | MS.gene26898:intron | 35.0% |
| ! | TCACATTTTGAATTGGGACT+TGG | - | chr1.4:80339276-80339295 | MS.gene26898:intron | 35.0% |
| ! | TGCTTCATGCTTGATGTTTT+GGG | - | chr1.4:80336735-80336754 | MS.gene26898:intron | 35.0% |
| ! | TTTTTCTGCAATGCAGGATT+AGG | - | chr1.4:80337331-80337350 | MS.gene26898:intron | 35.0% |
| !! | AAGTTATGAGTCGTTTTCGT+AGG | + | chr1.4:80336349-80336368 | None:intergenic | 35.0% |
| !! | AGGTTATTTCTCATGTGACT+TGG | - | chr1.4:80338451-80338470 | MS.gene26898:intron | 35.0% |
| !!! | ATCCTTCCAGGTTTTAGAAT+GGG | + | chr1.4:80339105-80339124 | None:intergenic | 35.0% |
| !!! | TATCCTTCCAGGTTTTAGAA+TGG | + | chr1.4:80339106-80339125 | None:intergenic | 35.0% |
| !!! | TTTTTTCGTTGTTATCCGCA+AGG | - | chr1.4:80337443-80337462 | MS.gene26898:intron | 35.0% |
| AACTATTCCAGCTAACTTGG+TGG | - | chr1.4:80337672-80337691 | MS.gene26898:intron | 40.0% | |
| AAGACCACAAACCGTGTAAA+TGG | + | chr1.4:80339350-80339369 | None:intergenic | 40.0% | |
| AAGCTGTTGCTAATCATGGT+TGG | - | chr1.4:80337590-80337609 | MS.gene26898:intron | 40.0% | |
| ACTAGTTGGCGTATTATTCC+TGG | + | chr1.4:80338183-80338202 | None:intergenic | 40.0% | |
| AGCTGTTGCTAATCATGGTT+GGG | - | chr1.4:80337591-80337610 | MS.gene26898:intron | 40.0% | |
| AGGCTATCTTAGAGAGCTTA+CGG | + | chr1.4:80336329-80336348 | None:intergenic | 40.0% | |
| AGTTTCCAAGCTGGCAAATT+TGG | + | chr1.4:80336865-80336884 | None:intergenic | 40.0% | |
| ATGGACATGTGACATGTCAT+AGG | + | chr1.4:80336288-80336307 | None:intergenic | 40.0% | |
| ATGGAGAAAGCAACTTTGGA+AGG | - | chr1.4:80339537-80339556 | MS.gene26898:CDS | 40.0% | |
| ATGTCATTGCAGATAGCTTG+AGG | - | chr1.4:80339030-80339049 | MS.gene26898:intron | 40.0% | |
| ATTCACTCACTACTATGTGG+TGG | - | chr1.4:80338754-80338773 | MS.gene26898:CDS | 40.0% | |
| CAATTTGGTATTCGGGGAAA+TGG | - | chr1.4:80337087-80337106 | MS.gene26898:CDS | 40.0% | |
| GCAACATGCAGATAGTATTC+AGG | - | chr1.4:80339058-80339077 | MS.gene26898:intron | 40.0% | |
| GGTTATGGAGAAAGCAACTT+TGG | - | chr1.4:80339533-80339552 | MS.gene26898:CDS | 40.0% | |
| GTCAAAACATGAAATCTGGG+AGG | - | chr1.4:80338542-80338561 | MS.gene26898:CDS | 40.0% | |
| TACATTCTCAAGAGTTCACG+AGG | - | chr1.4:80337909-80337928 | MS.gene26898:intron | 40.0% | |
| TCCTCCTCAATTTGGTATTC+GGG | - | chr1.4:80337080-80337099 | MS.gene26898:intron | 40.0% | |
| TGCATGTGAGACTATATCTG+AGG | - | chr1.4:80337008-80337027 | MS.gene26898:intron | 40.0% | |
| TGCATTCACTCACTACTATG+TGG | - | chr1.4:80338751-80338770 | MS.gene26898:CDS | 40.0% | |
| TTAACTTCCACCAAGTTAGC+TGG | + | chr1.4:80337682-80337701 | None:intergenic | 40.0% | |
| TTTCCCCGAATACCAAATTG+AGG | + | chr1.4:80337087-80337106 | None:intergenic | 40.0% | |
| ! | CAAAAGGTGTAAACTCTACG+AGG | - | chr1.4:80336620-80336639 | MS.gene26898:intron | 40.0% |
| ! | GAAAAAGAGGGTTGATTCTG+AGG | - | chr1.4:80336939-80336958 | MS.gene26898:intron | 40.0% |
| ! | GAGAGTCTGAAATCTAGTGT+AGG | + | chr1.4:80338981-80339000 | None:intergenic | 40.0% |
| ! | GCATGATTTGCATTTGTGCA+GGG | - | chr1.4:80338473-80338492 | MS.gene26898:intron | 40.0% |
| ! | GTATTCAGGTTCCAACAGAA+TGG | - | chr1.4:80339072-80339091 | MS.gene26898:intron | 40.0% |
| ! | GTGCTTCATGCTTGATGTTT+TGG | - | chr1.4:80336734-80336753 | MS.gene26898:intron | 40.0% |
| ! | TTATCTCATGTGATGGAGAG+TGG | - | chr1.4:80338357-80338376 | MS.gene26898:intron | 40.0% |
| ! | TTTTGAATTGGGACTTGGGA+TGG | - | chr1.4:80339281-80339300 | MS.gene26898:intron | 40.0% |
| !! | AATCAGCCCATTCTAAAACC+TGG | - | chr1.4:80339096-80339115 | MS.gene26898:intron | 40.0% |
| !!! | AACCCTCTTTTTCAGTGCAA+AGG | + | chr1.4:80336932-80336951 | None:intergenic | 40.0% |
| !!! | ACCCTCTTTTTCAGTGCAAA+GGG | + | chr1.4:80336931-80336950 | None:intergenic | 40.0% |
| !!! | CATGCTTGATGTTTTGGGAA+AGG | - | chr1.4:80336740-80336759 | MS.gene26898:intron | 40.0% |
| !!! | GCAACTTTTTTCTGCAATGC+AGG | - | chr1.4:80337325-80337344 | MS.gene26898:intron | 40.0% |
| AACAGTTCTGTCACTGATGG+AGG | + | chr1.4:80337378-80337397 | None:intergenic | 45.0% | |
| AGCAACAGTTCTGTCACTGA+TGG | + | chr1.4:80337381-80337400 | None:intergenic | 45.0% | |
| AGTAAATGCAGGATGGACCA+GGG | - | chr1.4:80339213-80339232 | MS.gene26898:intron | 45.0% | |
| ATGCAGGATTAGGAAGACTC+TGG | - | chr1.4:80337341-80337360 | MS.gene26898:intron | 45.0% | |
| ATGGAGCAACTTCTCGACAT+GGG | + | chr1.4:80338518-80338537 | None:intergenic | 45.0% | |
| ATTTAGCTGTTGGCGGCTAT+GGG | - | chr1.4:80337115-80337134 | MS.gene26898:CDS | 45.0% | |
| CCATCACATGAGATAAAGCC+CGG | + | chr1.4:80338353-80338372 | None:intergenic | 45.0% | |
| CCTCCTCAATTTGGTATTCG+GGG | - | chr1.4:80337081-80337100 | MS.gene26898:CDS | 45.0% | |
| CGCCAACTAGTACTTGAGTA+TGG | - | chr1.4:80338192-80338211 | MS.gene26898:intron | 45.0% | |
| CTGTCCATTTACACGGTTTG+TGG | - | chr1.4:80339343-80339362 | MS.gene26898:intron | 45.0% | |
| GCCCTTTGCACTGAAAAAGA+GGG | - | chr1.4:80336927-80336946 | MS.gene26898:intron | 45.0% | |
| GGAAGAACACCATCACTGAT+AGG | + | chr1.4:80338162-80338181 | None:intergenic | 45.0% | |
| GGTCCATGATATATCCTTCC+AGG | + | chr1.4:80339117-80339136 | None:intergenic | 45.0% | |
| GGTGAACATTTAGCTGTTGG+CGG | - | chr1.4:80337108-80337127 | MS.gene26898:CDS | 45.0% | |
| GTCTTTCTTGAAGCTCATCC+AGG | - | chr1.4:80336139-80336158 | MS.gene26898:intron | 45.0% | |
| TAGATCGAAATCAATGGCCG+AGG | - | chr1.4:80338709-80338728 | MS.gene26898:CDS | 45.0% | |
| TGCAATGCAAGTTTCCAAGC+TGG | + | chr1.4:80336874-80336893 | None:intergenic | 45.0% | |
| TGCCCTTTGCACTGAAAAAG+AGG | - | chr1.4:80336926-80336945 | MS.gene26898:intron | 45.0% | |
| TGTCACCAAATTTGCCAGCT+TGG | - | chr1.4:80336857-80336876 | MS.gene26898:intron | 45.0% | |
| ! | AGGATTCGGTTTCCGATGAT+GGG | - | chr1.4:80338085-80338104 | MS.gene26898:intron | 45.0% |
| ! | ATCAGTGATGGTGTTCTTCC+AGG | - | chr1.4:80338162-80338181 | MS.gene26898:intron | 45.0% |
| ! | CAAGAGTTCACGAGGTATCT+TGG | - | chr1.4:80337917-80337936 | MS.gene26898:intron | 45.0% |
| ! | GAACATCTGAGGTGTGTGAA+AGG | + | chr1.4:80336108-80336127 | None:intergenic | 45.0% |
| ! | GCTGGCAAATTTGGTGACAA+TGG | + | chr1.4:80336856-80336875 | None:intergenic | 45.0% |
| ! | GGCATGATTTGCATTTGTGC+AGG | - | chr1.4:80338472-80338491 | MS.gene26898:intron | 45.0% |
| ! | TAGGATTCGGTTTCCGATGA+TGG | - | chr1.4:80338084-80338103 | MS.gene26898:intron | 45.0% |
| ! | TCAAGAAAGACTTTTGCCGC+AGG | + | chr1.4:80336130-80336149 | None:intergenic | 45.0% |
| !! | AGCCCATTCTAAAACCTGGA+AGG | - | chr1.4:80339100-80339119 | MS.gene26898:intron | 45.0% |
| ACACACCTCAGATGTTCCTG+CGG | - | chr1.4:80336111-80336130 | MS.gene26898:CDS | 50.0% | |
| CAGACAGCTCCTATCAGTGA+TGG | - | chr1.4:80338150-80338169 | MS.gene26898:intron | 50.0% | |
| CATTTAGCTGTTGGCGGCTA+TGG | - | chr1.4:80337114-80337133 | MS.gene26898:CDS | 50.0% | |
| CCCCGAATACCAAATTGAGG+AGG | + | chr1.4:80337084-80337103 | None:intergenic | 50.0% | |
| GAGTAAATGCAGGATGGACC+AGG | - | chr1.4:80339212-80339231 | MS.gene26898:intron | 50.0% | |
| GATGGAGCAACTTCTCGACA+TGG | + | chr1.4:80338519-80338538 | None:intergenic | 50.0% | |
| GTCGAGAAGTTGCTCCATCA+TGG | - | chr1.4:80338520-80338539 | MS.gene26898:CDS | 50.0% | |
| TGCATTTGTGCAGGGTATGC+AGG | - | chr1.4:80338481-80338500 | MS.gene26898:intron | 50.0% | |
| TGGGCTGATTGCCATTCTGT+TGG | + | chr1.4:80339086-80339105 | None:intergenic | 50.0% | |
| ! | CCGGGCTTTATCTCATGTGA+TGG | - | chr1.4:80338350-80338369 | MS.gene26898:intron | 50.0% |
| ! | TTTTGCCGCAGGAACATCTG+AGG | + | chr1.4:80336119-80336138 | None:intergenic | 50.0% |
| AGAAGGGGCTCGTTCTTCTG+TGG | + | chr1.4:80338267-80338286 | None:intergenic | 55.0% | |
| AGACGGGGCTTTCCCATCAT+CGG | + | chr1.4:80338100-80338119 | None:intergenic | 55.0% | |
| GGGAAAGCCCCGTCTGATTA+TGG | - | chr1.4:80338105-80338124 | MS.gene26898:intron | 55.0% | |
| TGCAGGGTATGCAGGAGTGA+AGG | - | chr1.4:80338489-80338508 | MS.gene26898:CDS | 55.0% | |
| TAGCTGTTGGCGGCTATGGG+AGG | - | chr1.4:80337118-80337137 | MS.gene26898:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 80336070 | 80339590 | 80336070 | ID=MS.gene26898 |
| chr1.4 | mRNA | 80336070 | 80339590 | 80336070 | ID=MS.gene26898.t1;Parent=MS.gene26898 |
| chr1.4 | exon | 80339500 | 80339590 | 80339500 | ID=MS.gene26898.t1.exon1;Parent=MS.gene26898.t1 |
| chr1.4 | CDS | 80339500 | 80339590 | 80339500 | ID=cds.MS.gene26898.t1;Parent=MS.gene26898.t1 |
| chr1.4 | exon | 80338485 | 80338956 | 80338485 | ID=MS.gene26898.t1.exon2;Parent=MS.gene26898.t1 |
| chr1.4 | CDS | 80338485 | 80338956 | 80338485 | ID=cds.MS.gene26898.t1;Parent=MS.gene26898.t1 |
| chr1.4 | exon | 80338196 | 80338313 | 80338196 | ID=MS.gene26898.t1.exon3;Parent=MS.gene26898.t1 |
| chr1.4 | CDS | 80338196 | 80338313 | 80338196 | ID=cds.MS.gene26898.t1;Parent=MS.gene26898.t1 |
| chr1.4 | exon | 80337452 | 80337573 | 80337452 | ID=MS.gene26898.t1.exon4;Parent=MS.gene26898.t1 |
| chr1.4 | CDS | 80337452 | 80337573 | 80337452 | ID=cds.MS.gene26898.t1;Parent=MS.gene26898.t1 |
| chr1.4 | exon | 80337081 | 80337166 | 80337081 | ID=MS.gene26898.t1.exon5;Parent=MS.gene26898.t1 |
| chr1.4 | CDS | 80337081 | 80337166 | 80337081 | ID=cds.MS.gene26898.t1;Parent=MS.gene26898.t1 |
| chr1.4 | exon | 80336509 | 80336618 | 80336509 | ID=MS.gene26898.t1.exon6;Parent=MS.gene26898.t1 |
| chr1.4 | CDS | 80336509 | 80336618 | 80336509 | ID=cds.MS.gene26898.t1;Parent=MS.gene26898.t1 |
| chr1.4 | exon | 80336404 | 80336436 | 80336404 | ID=MS.gene26898.t1.exon7;Parent=MS.gene26898.t1 |
| chr1.4 | CDS | 80336404 | 80336436 | 80336404 | ID=cds.MS.gene26898.t1;Parent=MS.gene26898.t1 |
| chr1.4 | exon | 80336070 | 80336132 | 80336070 | ID=MS.gene26898.t1.exon8;Parent=MS.gene26898.t1 |
| chr1.4 | CDS | 80336070 | 80336132 | 80336070 | ID=cds.MS.gene26898.t1;Parent=MS.gene26898.t1 |
| Gene Sequence |
| Protein sequence |
