Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27072.t1 | XP_003589478.1 | 92.3 | 429 | 16 | 2 | 1 | 412 | 64 | 492 | 4.60E-221 | 776.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27072.t1 | Q6Q8A5 | 70.7 | 433 | 109 | 2 | 1 | 415 | 66 | 498 | 5.9e-169 | 595.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27072.t1 | G7I766 | 92.3 | 429 | 16 | 2 | 1 | 412 | 64 | 492 | 3.3e-221 | 776.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22288 | MS.gene27072 | PPI |
| MS.gene27072 | MS.gene024702 | PPI |
| MS.gene27072 | MS.gene049065 | PPI |
| MS.gene27072 | MS.gene21950 | PPI |
| MS.gene27072 | MS.gene21680 | PPI |
| MS.gene27072 | MS.gene015822 | PPI |
| MS.gene27072 | MS.gene05986 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27072.t1 | MTR_1g025140 | 92.308 | 429 | 16 | 2 | 1 | 412 | 64 | 492 | 0.0 | 798 |
| MS.gene27072.t1 | MTR_1g025140 | 90.741 | 324 | 13 | 2 | 1 | 307 | 64 | 387 | 0.0 | 593 |
| MS.gene27072.t1 | MTR_8g102460 | 55.220 | 431 | 174 | 4 | 1 | 412 | 62 | 492 | 1.53e-162 | 466 |
| MS.gene27072.t1 | MTR_8g014530 | 54.756 | 431 | 175 | 5 | 1 | 412 | 62 | 491 | 2.31e-159 | 458 |
| MS.gene27072.t1 | MTR_6g088795 | 53.132 | 431 | 183 | 4 | 1 | 412 | 60 | 490 | 2.84e-153 | 443 |
| MS.gene27072.t1 | MTR_5g009000 | 49.312 | 436 | 194 | 6 | 1 | 410 | 62 | 496 | 4.24e-134 | 394 |
| MS.gene27072.t1 | MTR_8g102460 | 54.062 | 357 | 145 | 4 | 75 | 412 | 1 | 357 | 2.65e-129 | 377 |
| MS.gene27072.t1 | MTR_8g102460 | 58.163 | 294 | 105 | 3 | 1 | 276 | 62 | 355 | 1.46e-112 | 334 |
| MS.gene27072.t1 | MTR_4g097900 | 40.741 | 270 | 114 | 5 | 144 | 408 | 1 | 229 | 1.29e-55 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27072.t1 | AT1G47840 | 60.698 | 430 | 150 | 3 | 1 | 412 | 65 | 493 | 0.0 | 516 |
| MS.gene27072.t1 | AT4G29130 | 54.378 | 434 | 179 | 4 | 1 | 415 | 62 | 495 | 5.44e-160 | 460 |
| MS.gene27072.t1 | AT2G19860 | 52.900 | 431 | 184 | 4 | 1 | 412 | 62 | 492 | 1.17e-149 | 434 |
| MS.gene27072.t1 | AT1G50460 | 46.667 | 435 | 204 | 5 | 1 | 408 | 62 | 495 | 2.48e-127 | 377 |
| MS.gene27072.t1 | AT2G19860 | 51.697 | 383 | 166 | 4 | 49 | 412 | 1 | 383 | 2.76e-127 | 373 |
| MS.gene27072.t1 | AT3G20040 | 44.651 | 430 | 213 | 5 | 4 | 409 | 65 | 493 | 7.03e-119 | 355 |
| MS.gene27072.t1 | AT1G47840 | 61.565 | 294 | 94 | 3 | 1 | 276 | 65 | 357 | 9.34e-118 | 348 |
| MS.gene27072.t1 | AT1G50460 | 46.667 | 405 | 188 | 5 | 31 | 408 | 16 | 419 | 1.40e-117 | 349 |
| MS.gene27072.t1 | AT4G37840 | 41.274 | 424 | 224 | 7 | 3 | 407 | 65 | 482 | 9.67e-92 | 285 |
| MS.gene27072.t1 | AT1G50460 | 49.488 | 293 | 130 | 4 | 1 | 276 | 62 | 353 | 2.70e-88 | 272 |
| MS.gene27072.t1 | AT1G47845 | 60.741 | 135 | 52 | 1 | 201 | 334 | 40 | 174 | 3.69e-50 | 168 |
Find 106 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACATGCCCTTGTAATT+TGG | 0.149102 | 1.1:-638024 | None:intergenic |
| TCTCTATCAAATACAGTTAA+AGG | 0.151018 | 1.1:-638202 | None:intergenic |
| GCTGAAGAGGAAGGTTTATT+TGG | 0.151162 | 1.1:+638445 | MS.gene27072:CDS |
| TGTTTCTTCTTCTGATAAAA+TGG | 0.207744 | 1.1:+638040 | MS.gene27072:CDS |
| GACTCAAAAGGTGTTATCTT+TGG | 0.251344 | 1.1:+639189 | MS.gene27072:CDS |
| GAAACATGCCCTTGTAATTT+GGG | 0.288810 | 1.1:-638023 | None:intergenic |
| TGCTGCATGGCGCTTAGATC+CGG | 0.320311 | 1.1:-638845 | None:intergenic |
| TCAAAAGATGGTTCTGGTAT+TGG | 0.321089 | 1.1:+639339 | MS.gene27072:CDS |
| GCTGGGCTTTCCTCTGATGA+TGG | 0.324548 | 1.1:+636724 | MS.gene27072:CDS |
| AACCAATCTCTCTTTCTTCC+TGG | 0.329300 | 1.1:-637514 | None:intergenic |
| CTTTCCTCTGATGATGGGCC+CGG | 0.337377 | 1.1:+636730 | MS.gene27072:CDS |
| CTGAAGAGGAAGGTTTATTT+GGG | 0.339959 | 1.1:+638446 | MS.gene27072:CDS |
| TTGTCCATGCCTTTCGTACT+TGG | 0.358338 | 1.1:+638487 | MS.gene27072:CDS |
| CTCCAGGAAGAAAGAGAGAT+TGG | 0.358609 | 1.1:+637512 | MS.gene27072:CDS |
| GATTCAGTAAAGGAGCTATT+AGG | 0.376273 | 1.1:+639282 | MS.gene27072:CDS |
| TCAATAGAAGTTTGTTTGAC+AGG | 0.385569 | 1.1:-637551 | None:intergenic |
| GCTGCATGGCGCTTAGATCC+GGG | 0.391118 | 1.1:-638844 | None:intergenic |
| TGGTATTGGAGGTGCTCTAT+TGG | 0.395444 | 1.1:+639353 | MS.gene27072:CDS |
| GAGTGGGGTGCTTTCTCAAA+TGG | 0.402916 | 1.1:+638175 | MS.gene27072:CDS |
| TGCTTGTTTGAACGAGGCTT+TGG | 0.402919 | 1.1:+637742 | MS.gene27072:CDS |
| TGTCTTCTCAAATGCGGGCT+GGG | 0.405946 | 1.1:+636707 | MS.gene27072:CDS |
| CTCTATCAAATACAGTTAAA+GGG | 0.412605 | 1.1:-638201 | None:intergenic |
| GAACATTCAAAAGATGGTTC+TGG | 0.414412 | 1.1:+639333 | MS.gene27072:CDS |
| ATGTCTTCTCAAATGCGGGC+TGG | 0.415217 | 1.1:+636706 | MS.gene27072:CDS |
| AACTGTATTTGATAGAGAAA+TGG | 0.419441 | 1.1:+638207 | MS.gene27072:CDS |
| TGCTCAATCTTGTTTGTACA+TGG | 0.425914 | 1.1:-639388 | None:intergenic |
| AGAAGTGTTGTTGCCATTGA+TGG | 0.429881 | 1.1:+639216 | MS.gene27072:CDS |
| GTGATAGAACATTCAAAAGA+TGG | 0.439467 | 1.1:+639327 | MS.gene27072:CDS |
| GGCGGTAGCTTAGCCGGTGC+AGG | 0.449242 | 1.1:+639135 | MS.gene27072:CDS |
| CGTGTGTTGAGGGTACAATT+AGG | 0.452657 | 1.1:+637027 | MS.gene27072:CDS |
| TTTCCTCTGATGATGGGCCC+GGG | 0.453044 | 1.1:+636731 | MS.gene27072:CDS |
| ATGAAAATTATCCTCAATAC+AGG | 0.454747 | 1.1:+639247 | MS.gene27072:CDS |
| GCCATGCAGCAAGATAATTC+TGG | 0.458132 | 1.1:+638857 | MS.gene27072:CDS |
| TTAGCCGGTGCAGGAATTGT+AGG | 0.462749 | 1.1:+639144 | MS.gene27072:CDS |
| GATACTGTTGGAACACTAGC+TGG | 0.464889 | 1.1:+637912 | MS.gene27072:CDS |
| ACAATCTCAGGAATGTATCT+AGG | 0.472627 | 1.1:+638391 | MS.gene27072:CDS |
| CTGGGCTTTCCTCTGATGAT+GGG | 0.475375 | 1.1:+636725 | MS.gene27072:CDS |
| GAGACGAATGCTAGTCAATA+TGG | 0.475755 | 1.1:+638423 | MS.gene27072:CDS |
| GGAAGAGTGTGGACATAAGT+TGG | 0.478490 | 1.1:-636766 | None:intergenic |
| CTGGCGATTTACAAGCAGTT+GGG | 0.483122 | 1.1:+638876 | MS.gene27072:CDS |
| AGTTGGTATCATGGGAAGCC+CGG | 0.484003 | 1.1:-636749 | None:intergenic |
| TGCAATGTCTTCTCAAATGC+GGG | 0.486500 | 1.1:+636702 | None:intergenic |
| AGATATGCGAGTTTCTGCTT+TGG | 0.488293 | 1.1:+637778 | MS.gene27072:CDS |
| AAGCGAGGCGGTAGCTTAGC+CGG | 0.493690 | 1.1:+639129 | MS.gene27072:CDS |
| TGTCCATGCCTTTCGTACTT+GGG | 0.498534 | 1.1:+638488 | MS.gene27072:CDS |
| TGATGATATAGGAATGAGAA+AGG | 0.502649 | 1.1:+636967 | MS.gene27072:intron |
| TATGTCCACACTCTTCCCTC+CGG | 0.506905 | 1.1:+636772 | MS.gene27072:CDS |
| TCCCTCCTCTATGATAAAGC+AGG | 0.511452 | 1.1:+638899 | MS.gene27072:CDS |
| AACAAACTTCCGTGTGTTGA+GGG | 0.512683 | 1.1:+637017 | MS.gene27072:CDS |
| GCGAAAACTTACATGGTGAC+CGG | 0.513028 | 1.1:-638248 | None:intergenic |
| GAAGTGTTGTTGCCATTGAT+GGG | 0.523264 | 1.1:+639217 | MS.gene27072:CDS |
| TGGACATAAGTTGGTATCAT+GGG | 0.526568 | 1.1:-636757 | None:intergenic |
| TCTGGCGATTTACAAGCAGT+TGG | 0.527066 | 1.1:+638875 | MS.gene27072:CDS |
| TGCAAGTAAGTCCTGTATTG+AGG | 0.528492 | 1.1:-639258 | None:intergenic |
| TTACCCCTGCTTTATCATAG+AGG | 0.528899 | 1.1:-638904 | None:intergenic |
| GCTAGTCAATATGGCTGAAG+AGG | 0.529644 | 1.1:+638432 | MS.gene27072:CDS |
| GTGGACATAAGTTGGTATCA+TGG | 0.531624 | 1.1:-636758 | None:intergenic |
| TAGCCGGTGCAGGAATTGTA+GGG | 0.535759 | 1.1:+639145 | MS.gene27072:CDS |
| CGAAAACTTACATGGTGACC+GGG | 0.538853 | 1.1:-638247 | None:intergenic |
| ATGCCCTTGTAATTTGGGAA+TGG | 0.547432 | 1.1:-638018 | None:intergenic |
| TCAGATCATTAGTACTGAGT+GGG | 0.549065 | 1.1:+638159 | MS.gene27072:intron |
| AAAGATGGTTCTGGTATTGG+AGG | 0.549177 | 1.1:+639342 | MS.gene27072:CDS |
| AAACAAACTTCTATTGACTC+TGG | 0.551611 | 1.1:+637557 | MS.gene27072:CDS |
| AGTGCCATTCCCAAATTACA+AGG | 0.554150 | 1.1:+638014 | MS.gene27072:CDS |
| GAACAAACTTCCGTGTGTTG+AGG | 0.554788 | 1.1:+637016 | MS.gene27072:CDS |
| GTTGGTATCATGGGAAGCCC+GGG | 0.557493 | 1.1:-636748 | None:intergenic |
| ATGTCCACACTCTTCCCTCC+GGG | 0.561316 | 1.1:+636773 | MS.gene27072:CDS |
| TCCAGAAACAGCAAAACCCT+TGG | 0.562132 | 1.1:-637597 | None:intergenic |
| GCCAGAATTATCTTGCTGCA+TGG | 0.563415 | 1.1:-638858 | None:intergenic |
| TAATAGGTTAATGATACTGT+TGG | 0.566614 | 1.1:+637900 | MS.gene27072:intron |
| TTACTTGCAAGATTCAGTAA+AGG | 0.568226 | 1.1:+639272 | MS.gene27072:CDS |
| AATCCCTACAATTCCTGCAC+CGG | 0.571549 | 1.1:-639148 | None:intergenic |
| GTCAATATGGCTGAAGAGGA+AGG | 0.574803 | 1.1:+638436 | MS.gene27072:CDS |
| AAAATTTACCCAAGTACGAA+AGG | 0.578161 | 1.1:-638496 | None:intergenic |
| CCCCTGCTTTATCATAGAGG+AGG | 0.578706 | 1.1:-638901 | None:intergenic |
| CTGCATGGCGCTTAGATCCG+GGG | 0.580837 | 1.1:-638843 | None:intergenic |
| CCCTGCTTTATCATAGAGGA+GGG | 0.582109 | 1.1:-638900 | None:intergenic |
| AAAATGGAAGAAGACTCAAA+AGG | 0.582348 | 1.1:+639177 | MS.gene27072:CDS |
| ATACTACGACAATGATGCTA+AGG | 0.592137 | 1.1:+637941 | MS.gene27072:CDS |
| CCCTCCTCTATGATAAAGCA+GGG | 0.592227 | 1.1:+638900 | MS.gene27072:CDS |
| AAGCCCGGGCCCATCATCAG+AGG | 0.592335 | 1.1:-636734 | None:intergenic |
| CAATCTCTCTTTCTTCCTGG+AGG | 0.596434 | 1.1:-637511 | None:intergenic |
| AGTGTTGTTGCCATTGATGG+GGG | 0.606184 | 1.1:+639219 | MS.gene27072:CDS |
| ATGCAATGTCTTCTCAAATG+CGG | 0.607135 | 1.1:+636701 | None:intergenic |
| GATGCTGCTAGTATCAATCC+CGG | 0.613145 | 1.1:+638229 | MS.gene27072:CDS |
| ATACTAATCAAGTGGACCAA+GGG | 0.614805 | 1.1:+637581 | MS.gene27072:CDS |
| ACTCTGGCATACTAATCAAG+TGG | 0.616192 | 1.1:+637573 | MS.gene27072:CDS |
| AAGTGTTGTTGCCATTGATG+GGG | 0.622533 | 1.1:+639218 | MS.gene27072:CDS |
| CTAATTGTACCCTCAACACA+CGG | 0.626345 | 1.1:-637026 | None:intergenic |
| AACGAGGCTTTGGAAAGACA+AGG | 0.627021 | 1.1:+637752 | MS.gene27072:CDS |
| TACATAGGTAGGAAGAGATG+TGG | 0.629164 | 1.1:+637718 | MS.gene27072:intron |
| TTACCCAAGTACGAAAGGCA+TGG | 0.631233 | 1.1:-638491 | None:intergenic |
| CATACTAATCAAGTGGACCA+AGG | 0.632792 | 1.1:+637580 | MS.gene27072:CDS |
| TCTCATGTTTGCTACGTCCG+AGG | 0.634285 | 1.1:+637107 | MS.gene27072:CDS |
| TTCAGATCATTAGTACTGAG+TGG | 0.635066 | 1.1:+638158 | MS.gene27072:intron |
| GATGATATAGGAATGAGAAA+GGG | 0.643987 | 1.1:+636968 | MS.gene27072:intron |
| TGTGACACAATTGTAAAGCG+AGG | 0.652118 | 1.1:+639114 | MS.gene27072:CDS |
| GTAGCAAACATGAGATCATG+AGG | 0.657026 | 1.1:-637099 | None:intergenic |
| GTGTTGAGGGTACAATTAGG+TGG | 0.658218 | 1.1:+637030 | MS.gene27072:CDS |
| GAAATATAGACACACCCGGA+GGG | 0.661129 | 1.1:-636787 | None:intergenic |
| TGTGGTTGCTTGTTTGAACG+AGG | 0.662133 | 1.1:+637736 | MS.gene27072:CDS |
| GTGCCATTCCCAAATTACAA+GGG | 0.674611 | 1.1:+638015 | MS.gene27072:CDS |
| CAGATCATTAGTACTGAGTG+GGG | 0.682773 | 1.1:+638160 | MS.gene27072:intron |
| CACACCCGGAGGGAAGAGTG+TGG | 0.700125 | 1.1:-636777 | None:intergenic |
| CCTCCTCTATGATAAAGCAG+GGG | 0.712381 | 1.1:+638901 | MS.gene27072:CDS |
| GACACAATTGTAAAGCGAGG+CGG | 0.718978 | 1.1:+639117 | MS.gene27072:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAGTAAAAAAATTAT+CGG | - | chr1.1:638680-638699 | None:intergenic | 10.0% |
| !! | TCTATAACAAAATAATAAAA+TGG | - | chr1.1:637302-637321 | None:intergenic | 10.0% |
| !!! | AATTTACAAATAAATTTTAC+AGG | + | chr1.1:638819-638838 | MS.gene27072:intron | 10.0% |
| !!! | ATGTTTTCTTAATAATAATT+GGG | + | chr1.1:637399-637418 | MS.gene27072:intron | 10.0% |
| !! | AAAGAAGTAAAAAAATTATC+GGG | - | chr1.1:638679-638698 | None:intergenic | 15.0% |
| !! | AAATATAGAACTCTAATTAA+TGG | - | chr1.1:637664-637683 | None:intergenic | 15.0% |
| !! | AACCATATATAAAAATATTG+TGG | - | chr1.1:636886-636905 | None:intergenic | 15.0% |
| !! | ATTAAATTGTTTATCCAAAA+AGG | + | chr1.1:637346-637365 | MS.gene27072:intron | 15.0% |
| !! | ATTAATTAGAGTTCTATATT+TGG | + | chr1.1:637663-637682 | MS.gene27072:intron | 15.0% |
| !! | TTATTTGAACAAAGAAATAA+AGG | - | chr1.1:638087-638106 | None:intergenic | 15.0% |
| !!! | AATTTGGTGAAATTAAAATT+AGG | + | chr1.1:638615-638634 | MS.gene27072:intron | 15.0% |
| !!! | ACAATATTTTTATATATGGT+TGG | + | chr1.1:636885-636904 | MS.gene27072:intron | 15.0% |
| !!! | ATCCACAATATTTTTATATA+TGG | + | chr1.1:636881-636900 | MS.gene27072:intron | 15.0% |
| !!! | ATTTGGTGAAATTAAAATTA+GGG | + | chr1.1:638616-638635 | MS.gene27072:intron | 15.0% |
| !!! | GATGTTTTCTTAATAATAAT+TGG | + | chr1.1:637398-637417 | MS.gene27072:intron | 15.0% |
| !!! | TTTTGGATAAACAATTTAAT+TGG | - | chr1.1:637346-637365 | None:intergenic | 15.0% |
| !! | AAAATTCAAACTCTTTACAT+AGG | + | chr1.1:637703-637722 | MS.gene27072:intron | 20.0% |
| !! | AATAGTAAAAATCACAAACA+AGG | - | chr1.1:636931-636950 | None:intergenic | 20.0% |
| !! | ATTTCTTTCCTTAACTTATA+CGG | + | chr1.1:636805-636824 | MS.gene27072:intron | 20.0% |
| !! | TAAATATACAAATGCAGTAT+TGG | + | chr1.1:637850-637869 | MS.gene27072:intron | 20.0% |
| !! | TTCTGATTGCTAATATAATT+TGG | + | chr1.1:638599-638618 | MS.gene27072:intron | 20.0% |
| !!! | GATTAATATGATGATGATAT+AGG | + | chr1.1:636956-636975 | MS.gene27072:intron | 20.0% |
| !!! | TGTAAATTGTAAGCATATTT+TGG | - | chr1.1:638807-638826 | None:intergenic | 20.0% |
| ! | AACTGTATTTGATAGAGAAA+TGG | + | chr1.1:638207-638226 | MS.gene27072:CDS | 25.0% |
| ! | ATGAAAATTATCCTCAATAC+AGG | + | chr1.1:639247-639266 | MS.gene27072:CDS | 25.0% |
| ! | CTAATAATTTCCTACGTAAT+AGG | + | chr1.1:637884-637903 | MS.gene27072:intron | 25.0% |
| ! | CTCTATCAAATACAGTTAAA+GGG | - | chr1.1:638204-638223 | None:intergenic | 25.0% |
| ! | GTCTTAAATATTTATGAGAC+TGG | + | chr1.1:637168-637187 | MS.gene27072:intron | 25.0% |
| ! | TAAATATTTATGAGACTGGT+CGG | + | chr1.1:637172-637191 | MS.gene27072:intron | 25.0% |
| ! | TAATAGGTTAATGATACTGT+TGG | + | chr1.1:637900-637919 | MS.gene27072:intron | 25.0% |
| ! | TCTCTATCAAATACAGTTAA+AGG | - | chr1.1:638205-638224 | None:intergenic | 25.0% |
| ! | TGTTTCTTCTTCTGATAAAA+TGG | + | chr1.1:638040-638059 | MS.gene27072:CDS | 25.0% |
| !! | CATTTTAAACTTAGTGATTG+AGG | - | chr1.1:639019-639038 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTTCACTTAGAT+TGG | - | chr1.1:639082-639101 | None:intergenic | 25.0% |
| !!! | AAATGCAGTATTGGTATAAA+TGG | + | chr1.1:637859-637878 | MS.gene27072:intron | 25.0% |
| !!! | ACTCACTTGTTTTCTATATA+AGG | - | chr1.1:638317-638336 | None:intergenic | 25.0% |
| !!! | CTCACTTGTTTTCTATATAA+GGG | - | chr1.1:638316-638335 | None:intergenic | 25.0% |
| AAAATGGAAGAAGACTCAAA+AGG | + | chr1.1:639177-639196 | MS.gene27072:CDS | 30.0% | |
| AAAATTTACCCAAGTACGAA+AGG | - | chr1.1:638499-638518 | None:intergenic | 30.0% | |
| ACTTCTGTATATGATTTGAG+CGG | - | chr1.1:638542-638561 | None:intergenic | 30.0% | |
| AGATACACTTTGTGTTTGTA+AGG | + | chr1.1:638738-638757 | MS.gene27072:intron | 30.0% | |
| AGGTTAATGTGTACTTTCTT+GGG | - | chr1.1:638999-639018 | None:intergenic | 30.0% | |
| ATCTTCTTTGTCCACAAATT+TGG | - | chr1.1:637476-637495 | None:intergenic | 30.0% | |
| CAACAAAATTACGACATAGA+TGG | - | chr1.1:638275-638294 | None:intergenic | 30.0% | |
| CAATCAAAACAAACTAACCT+CGG | - | chr1.1:637127-637146 | None:intergenic | 30.0% | |
| GATGATATAGGAATGAGAAA+GGG | + | chr1.1:636968-636987 | MS.gene27072:intron | 30.0% | |
| GGATATGATATAATATACGC+AGG | + | chr1.1:637420-637439 | MS.gene27072:intron | 30.0% | |
| GTATCATTAACCTATTACGT+AGG | - | chr1.1:637897-637916 | None:intergenic | 30.0% | |
| GTGATAGAACATTCAAAAGA+TGG | + | chr1.1:639327-639346 | MS.gene27072:CDS | 30.0% | |
| TGATGATATAGGAATGAGAA+AGG | + | chr1.1:636967-636986 | MS.gene27072:intron | 30.0% | |
| TTAACATGCAAAGTAAGCTT+TGG | - | chr1.1:637372-637391 | None:intergenic | 30.0% | |
| TTACTTGCAAGATTCAGTAA+AGG | + | chr1.1:639272-639291 | MS.gene27072:CDS | 30.0% | |
| TTCAAACTCTTTACATAGGT+AGG | + | chr1.1:637707-637726 | MS.gene27072:intron | 30.0% | |
| ! | AAATAAATTTTACAGGACCC+CGG | + | chr1.1:638826-638845 | MS.gene27072:intron | 30.0% |
| ! | AAATATTTATGAGACTGGTC+GGG | + | chr1.1:637173-637192 | MS.gene27072:intron | 30.0% |
| ! | CTGTTTGATTTCATTGCTTT+GGG | + | chr1.1:637445-637464 | MS.gene27072:intron | 30.0% |
| ! | TCAATAGAAGTTTGTTTGAC+AGG | - | chr1.1:637554-637573 | None:intergenic | 30.0% |
| ! | TGAAAGAAAAACAGTTCTAG+AGG | + | chr1.1:639089-639108 | MS.gene27072:CDS | 30.0% |
| ! | TGTTTGATTTCATTGCTTTG+GGG | + | chr1.1:637446-637465 | MS.gene27072:intron | 30.0% |
| !! | AAACAAACTTCTATTGACTC+TGG | + | chr1.1:637557-637576 | MS.gene27072:CDS | 30.0% |
| !! | ATTTTTGAGAAGACAATCTC+AGG | + | chr1.1:638379-638398 | MS.gene27072:CDS | 30.0% |
| !! | TTGTTTTATGCATTGGATCT+TGG | + | chr1.1:636991-637010 | MS.gene27072:CDS | 30.0% |
| ACAATCTCAGGAATGTATCT+AGG | + | chr1.1:638391-638410 | MS.gene27072:CDS | 35.0% | |
| AGAAACATGCCCTTGTAATT+TGG | - | chr1.1:638027-638046 | None:intergenic | 35.0% | |
| ATACTAATCAAGTGGACCAA+GGG | + | chr1.1:637581-637600 | MS.gene27072:CDS | 35.0% | |
| ATACTACGACAATGATGCTA+AGG | + | chr1.1:637941-637960 | MS.gene27072:CDS | 35.0% | |
| CGAGTTTCTGTAATCTATCT+TGG | - | chr1.1:637263-637282 | None:intergenic | 35.0% | |
| CTGAAGAGGAAGGTTTATTT+GGG | + | chr1.1:638446-638465 | MS.gene27072:CDS | 35.0% | |
| GAAACATGCCCTTGTAATTT+GGG | - | chr1.1:638026-638045 | None:intergenic | 35.0% | |
| GAAAGAAATATAGACACACC+CGG | - | chr1.1:636794-636813 | None:intergenic | 35.0% | |
| GAACATTCAAAAGATGGTTC+TGG | + | chr1.1:639333-639352 | MS.gene27072:CDS | 35.0% | |
| GAGGTTAATGTGTACTTTCT+TGG | - | chr1.1:639000-639019 | None:intergenic | 35.0% | |
| GATTCAGTAAAGGAGCTATT+AGG | + | chr1.1:639282-639301 | MS.gene27072:CDS | 35.0% | |
| GCAGGTAATGTAAAACACTA+AGG | - | chr1.1:638977-638996 | None:intergenic | 35.0% | |
| TAACTCGTCCGTATAAGTTA+AGG | - | chr1.1:636816-636835 | None:intergenic | 35.0% | |
| TGGAACTGTATGTGTTTGTT+TGG | + | chr1.1:637616-637635 | MS.gene27072:intron | 35.0% | |
| TGTAGGGATTCTGCAAAAAA+TGG | + | chr1.1:639161-639180 | MS.gene27072:CDS | 35.0% | |
| ! | AAGGCATGGACAATTTTTGA+GGG | - | chr1.1:638480-638499 | None:intergenic | 35.0% |
| ! | AGTAGATTTCATTTTCCTCC+AGG | + | chr1.1:637496-637515 | MS.gene27072:CDS | 35.0% |
| ! | GCTGTTTGATTTCATTGCTT+TGG | + | chr1.1:637444-637463 | MS.gene27072:intron | 35.0% |
| ! | TCAGATCATTAGTACTGAGT+GGG | + | chr1.1:638159-638178 | MS.gene27072:intron | 35.0% |
| ! | TTCAGATCATTAGTACTGAG+TGG | + | chr1.1:638158-638177 | MS.gene27072:intron | 35.0% |
| ! | TTTTATGCATTGGATCTTGG+AGG | + | chr1.1:636994-637013 | MS.gene27072:CDS | 35.0% |
| !! | AAAGGCATGGACAATTTTTG+AGG | - | chr1.1:638481-638500 | None:intergenic | 35.0% |
| !! | AAAGTAAGCTTTGGCCTTTT+TGG | - | chr1.1:637363-637382 | None:intergenic | 35.0% |
| !! | GAAAGGGTTGTTTTATGCAT+TGG | + | chr1.1:636984-637003 | MS.gene27072:CDS | 35.0% |
| !! | GACTCAAAAGGTGTTATCTT+TGG | + | chr1.1:639189-639208 | MS.gene27072:CDS | 35.0% |
| !! | TCAAAAGATGGTTCTGGTAT+TGG | + | chr1.1:639339-639358 | MS.gene27072:CDS | 35.0% |
| !! | TGGACATAAGTTGGTATCAT+GGG | - | chr1.1:636760-636779 | None:intergenic | 35.0% |
| !!! | GCTAAGGTTGCTGTTATTTT+AGG | + | chr1.1:637957-637976 | MS.gene27072:CDS | 35.0% |
| !!! | GTTGCTGTTATTTTAGGAAC+TGG | + | chr1.1:637963-637982 | MS.gene27072:CDS | 35.0% |
| AACAAACTTCCGTGTGTTGA+GGG | + | chr1.1:637017-637036 | MS.gene27072:CDS | 40.0% | |
| AACCAATCTCTCTTTCTTCC+TGG | - | chr1.1:637517-637536 | None:intergenic | 40.0% | |
| AAGAGAACAAGTGAGTGTCA+AGG | - | chr1.1:639049-639068 | None:intergenic | 40.0% | |
| ACTCTGGCATACTAATCAAG+TGG | + | chr1.1:637573-637592 | MS.gene27072:CDS | 40.0% | |
| AGATATGCGAGTTTCTGCTT+TGG | + | chr1.1:637778-637797 | MS.gene27072:CDS | 40.0% | |
| AGATGGTGCGAAAACTTACA+TGG | - | chr1.1:638258-638277 | None:intergenic | 40.0% | |
| ATGCCCTTGTAATTTGGGAA+TGG | - | chr1.1:638021-638040 | None:intergenic | 40.0% | |
| CATACTAATCAAGTGGACCA+AGG | + | chr1.1:637580-637599 | MS.gene27072:CDS | 40.0% | |
| CTAATTGTACCCTCAACACA+CGG | - | chr1.1:637029-637048 | None:intergenic | 40.0% | |
| GAGACGAATGCTAGTCAATA+TGG | + | chr1.1:638423-638442 | MS.gene27072:CDS | 40.0% | |
| GCTGAAGAGGAAGGTTTATT+TGG | + | chr1.1:638445-638464 | MS.gene27072:CDS | 40.0% | |
| GTAGCAAACATGAGATCATG+AGG | - | chr1.1:637102-637121 | None:intergenic | 40.0% | |
| TAATGTGTACTTTCTTGGGC+AGG | - | chr1.1:638995-639014 | None:intergenic | 40.0% | |
| TACATAGGTAGGAAGAGATG+TGG | + | chr1.1:637718-637737 | MS.gene27072:intron | 40.0% | |
| TGCAAGTAAGTCCTGTATTG+AGG | - | chr1.1:639261-639280 | None:intergenic | 40.0% | |
| TGTGACACAATTGTAAAGCG+AGG | + | chr1.1:639114-639133 | MS.gene27072:CDS | 40.0% | |
| TTACCCCTGCTTTATCATAG+AGG | - | chr1.1:638907-638926 | None:intergenic | 40.0% | |
| TTCATACAAACCCCCATCAA+TGG | - | chr1.1:639232-639251 | None:intergenic | 40.0% | |
| ! | AAGTGTTGTTGCCATTGATG+GGG | + | chr1.1:639218-639237 | MS.gene27072:CDS | 40.0% |
| ! | AGTGCCATTCCCAAATTACA+AGG | + | chr1.1:638014-638033 | MS.gene27072:CDS | 40.0% |
| ! | CAGATCATTAGTACTGAGTG+GGG | + | chr1.1:638160-638179 | MS.gene27072:intron | 40.0% |
| ! | GTGCCATTCCCAAATTACAA+GGG | + | chr1.1:638015-638034 | MS.gene27072:CDS | 40.0% |
| !! | AAAGATGGTTCTGGTATTGG+AGG | + | chr1.1:639342-639361 | MS.gene27072:CDS | 40.0% |
| !! | AGAAGTGTTGTTGCCATTGA+TGG | + | chr1.1:639216-639235 | MS.gene27072:CDS | 40.0% |
| !! | GAAGTGTTGTTGCCATTGAT+GGG | + | chr1.1:639217-639236 | MS.gene27072:CDS | 40.0% |
| !! | GTGGACATAAGTTGGTATCA+TGG | - | chr1.1:636761-636780 | None:intergenic | 40.0% |
| AATCCCTACAATTCCTGCAC+CGG | - | chr1.1:639151-639170 | None:intergenic | 45.0% | |
| AGAAATATAGACACACCCGG+AGG | - | chr1.1:636791-636810 | None:intergenic | 45.0% | |
| CAATCTCTCTTTCTTCCTGG+AGG | - | chr1.1:637514-637533 | None:intergenic | 45.0% | |
| CCCTCCTCTATGATAAAGCA+GGG | + | chr1.1:638900-638919 | MS.gene27072:CDS | 45.0% | |
| CCCTGCTTTATCATAGAGGA+GGG | - | chr1.1:638903-638922 | None:intergenic | 45.0% | |
| CCTCCTCTATGATAAAGCAG+GGG | + | chr1.1:638901-638920 | MS.gene27072:CDS | 45.0% | |
| CGAAAACTTACATGGTGACC+GGG | - | chr1.1:638250-638269 | None:intergenic | 45.0% | |
| CTCCAGGAAGAAAGAGAGAT+TGG | + | chr1.1:637512-637531 | MS.gene27072:CDS | 45.0% | |
| CTGGCGATTTACAAGCAGTT+GGG | + | chr1.1:638876-638895 | MS.gene27072:CDS | 45.0% | |
| GAAATATAGACACACCCGGA+GGG | - | chr1.1:636790-636809 | None:intergenic | 45.0% | |
| GAACAAACTTCCGTGTGTTG+AGG | + | chr1.1:637016-637035 | MS.gene27072:CDS | 45.0% | |
| GACACAATTGTAAAGCGAGG+CGG | + | chr1.1:639117-639136 | MS.gene27072:CDS | 45.0% | |
| GACACTCACTTGTTCTCTTC+AGG | + | chr1.1:639050-639069 | MS.gene27072:intron | 45.0% | |
| GATACTGTTGGAACACTAGC+TGG | + | chr1.1:637912-637931 | MS.gene27072:CDS | 45.0% | |
| GATGCTGCTAGTATCAATCC+CGG | + | chr1.1:638229-638248 | MS.gene27072:CDS | 45.0% | |
| GCCAGAATTATCTTGCTGCA+TGG | - | chr1.1:638861-638880 | None:intergenic | 45.0% | |
| GCCATGCAGCAAGATAATTC+TGG | + | chr1.1:638857-638876 | MS.gene27072:CDS | 45.0% | |
| GCGAAAACTTACATGGTGAC+CGG | - | chr1.1:638251-638270 | None:intergenic | 45.0% | |
| GCTAGTCAATATGGCTGAAG+AGG | + | chr1.1:638432-638451 | MS.gene27072:CDS | 45.0% | |
| GGACGAGTTAAGCTTATTCG+AGG | + | chr1.1:636826-636845 | MS.gene27072:intron | 45.0% | |
| GTCAATATGGCTGAAGAGGA+AGG | + | chr1.1:638436-638455 | MS.gene27072:CDS | 45.0% | |
| TCCAGAAACAGCAAAACCCT+TGG | - | chr1.1:637600-637619 | None:intergenic | 45.0% | |
| TCCCTCCTCTATGATAAAGC+AGG | + | chr1.1:638899-638918 | MS.gene27072:CDS | 45.0% | |
| TCTGGCGATTTACAAGCAGT+TGG | + | chr1.1:638875-638894 | MS.gene27072:CDS | 45.0% | |
| TGCTTGTTTGAACGAGGCTT+TGG | + | chr1.1:637742-637761 | MS.gene27072:CDS | 45.0% | |
| TGTCCATGCCTTTCGTACTT+GGG | + | chr1.1:638488-638507 | MS.gene27072:CDS | 45.0% | |
| TGTGGTTGCTTGTTTGAACG+AGG | + | chr1.1:637736-637755 | MS.gene27072:CDS | 45.0% | |
| TTACCCAAGTACGAAAGGCA+TGG | - | chr1.1:638494-638513 | None:intergenic | 45.0% | |
| TTGTCCATGCCTTTCGTACT+TGG | + | chr1.1:638487-638506 | MS.gene27072:CDS | 45.0% | |
| ! | AGTGTTGTTGCCATTGATGG+GGG | + | chr1.1:639219-639238 | MS.gene27072:CDS | 45.0% |
| ! | CGTGTGTTGAGGGTACAATT+AGG | + | chr1.1:637027-637046 | MS.gene27072:CDS | 45.0% |
| ! | GGAAGAGTGTGGACATAAGT+TGG | - | chr1.1:636769-636788 | None:intergenic | 45.0% |
| ! | GTGTTGAGGGTACAATTAGG+TGG | + | chr1.1:637030-637049 | MS.gene27072:CDS | 45.0% |
| !! | AACGAGGCTTTGGAAAGACA+AGG | + | chr1.1:637752-637771 | MS.gene27072:CDS | 45.0% |
| !! | TGGTATTGGAGGTGCTCTAT+TGG | + | chr1.1:639353-639372 | MS.gene27072:CDS | 45.0% |
| !! | TTTGGGGCTAGCCAAATTTG+TGG | + | chr1.1:637462-637481 | MS.gene27072:intron | 45.0% |
| !!! | ACCAAGGGTTTTGCTGTTTC+TGG | + | chr1.1:637596-637615 | MS.gene27072:CDS | 45.0% |
| ATGTCTTCTCAAATGCGGGC+TGG | + | chr1.1:636706-636725 | MS.gene27072:CDS | 50.0% | |
| CCCCTGCTTTATCATAGAGG+AGG | - | chr1.1:638904-638923 | None:intergenic | 50.0% | |
| CTGGGCTTTCCTCTGATGAT+GGG | + | chr1.1:636725-636744 | MS.gene27072:CDS | 50.0% | |
| TAGCCGGTGCAGGAATTGTA+GGG | + | chr1.1:639145-639164 | MS.gene27072:CDS | 50.0% | |
| TATGTCCACACTCTTCCCTC+CGG | + | chr1.1:636772-636791 | MS.gene27072:CDS | 50.0% | |
| TGTCTTCTCAAATGCGGGCT+GGG | + | chr1.1:636707-636726 | MS.gene27072:CDS | 50.0% | |
| TTAGCCGGTGCAGGAATTGT+AGG | + | chr1.1:639144-639163 | MS.gene27072:CDS | 50.0% | |
| ! | AGTTGGTATCATGGGAAGCC+CGG | - | chr1.1:636752-636771 | None:intergenic | 50.0% |
| ! | GAGTGGGGTGCTTTCTCAAA+TGG | + | chr1.1:638175-638194 | MS.gene27072:CDS | 50.0% |
| ! | TCTCATGTTTGCTACGTCCG+AGG | + | chr1.1:637107-637126 | MS.gene27072:CDS | 50.0% |
| ATGTCCACACTCTTCCCTCC+GGG | + | chr1.1:636773-636792 | MS.gene27072:CDS | 55.0% | |
| GCTGGGCTTTCCTCTGATGA+TGG | + | chr1.1:636724-636743 | MS.gene27072:CDS | 55.0% | |
| GTTGGTATCATGGGAAGCCC+GGG | - | chr1.1:636751-636770 | None:intergenic | 55.0% | |
| TGCTGCATGGCGCTTAGATC+CGG | - | chr1.1:638848-638867 | None:intergenic | 55.0% | |
| !! | CTTTCCTCTGATGATGGGCC+CGG | + | chr1.1:636730-636749 | MS.gene27072:CDS | 55.0% |
| !! | TTTCCTCTGATGATGGGCCC+GGG | + | chr1.1:636731-636750 | MS.gene27072:CDS | 55.0% |
| AAGCGAGGCGGTAGCTTAGC+CGG | + | chr1.1:639129-639148 | MS.gene27072:CDS | 60.0% | |
| CTGCATGGCGCTTAGATCCG+GGG | - | chr1.1:638846-638865 | None:intergenic | 60.0% | |
| GCTGCATGGCGCTTAGATCC+GGG | - | chr1.1:638847-638866 | None:intergenic | 60.0% | |
| AAGCCCGGGCCCATCATCAG+AGG | - | chr1.1:636737-636756 | None:intergenic | 65.0% | |
| CACACCCGGAGGGAAGAGTG+TGG | - | chr1.1:636780-636799 | None:intergenic | 65.0% | |
| GGCGGTAGCTTAGCCGGTGC+AGG | + | chr1.1:639135-639154 | MS.gene27072:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 636706 | 639407 | 636706 | ID=MS.gene27072 |
| chr1.1 | mRNA | 636706 | 639407 | 636706 | ID=MS.gene27072.t1;Parent=MS.gene27072 |
| chr1.1 | exon | 636706 | 636794 | 636706 | ID=MS.gene27072.t1.exon1;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 636706 | 636794 | 636706 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| chr1.1 | exon | 636978 | 637128 | 636978 | ID=MS.gene27072.t1.exon2;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 636978 | 637128 | 636978 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| chr1.1 | exon | 637491 | 637622 | 637491 | ID=MS.gene27072.t1.exon3;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 637491 | 637622 | 637491 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| chr1.1 | exon | 637725 | 637799 | 637725 | ID=MS.gene27072.t1.exon4;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 637725 | 637799 | 637725 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| chr1.1 | exon | 637906 | 638061 | 637906 | ID=MS.gene27072.t1.exon5;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 637906 | 638061 | 637906 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| chr1.1 | exon | 638163 | 638258 | 638163 | ID=MS.gene27072.t1.exon6;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 638163 | 638258 | 638163 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| chr1.1 | exon | 638379 | 638509 | 638379 | ID=MS.gene27072.t1.exon7;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 638379 | 638509 | 638379 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| chr1.1 | exon | 638841 | 638922 | 638841 | ID=MS.gene27072.t1.exon8;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 638841 | 638922 | 638841 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| chr1.1 | exon | 639072 | 639407 | 639072 | ID=MS.gene27072.t1.exon9;Parent=MS.gene27072.t1 |
| chr1.1 | CDS | 639072 | 639407 | 639072 | ID=cds.MS.gene27072.t1;Parent=MS.gene27072.t1 |
| Gene Sequence |
| Protein sequence |
