Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21680.t1 | XP_003610965.1 | 98.6 | 496 | 7 | 0 | 1 | 496 | 1 | 496 | 2.00E-268 | 934.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21680.t1 | Q9LPS1 | 71.0 | 496 | 141 | 3 | 1 | 494 | 1 | 495 | 8.6e-191 | 667.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21680.t1 | G7K998 | 98.6 | 496 | 7 | 0 | 1 | 496 | 1 | 496 | 1.5e-268 | 934.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene21680 | 0.827597 | 1.43E-54 | -1.69E-46 |
| MS.gene049166 | MS.gene21680 | 0.803367 | 3.61E-49 | -1.69E-46 |
| MS.gene04917 | MS.gene21680 | 0.828432 | 9.02E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene21680 | 0.8343 | 3.25E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene21680 | 0.834088 | 3.67E-56 | -1.69E-46 |
| MS.gene050838 | MS.gene21680 | 0.800364 | 1.49E-48 | -1.69E-46 |
| MS.gene051233 | MS.gene21680 | 0.804518 | 2.08E-49 | -1.69E-46 |
| MS.gene053167 | MS.gene21680 | 0.816316 | 5.89E-52 | -1.69E-46 |
| MS.gene053726 | MS.gene21680 | 0.805693 | 1.18E-49 | -1.69E-46 |
| MS.gene053895 | MS.gene21680 | -0.81871 | 1.70E-52 | -1.69E-46 |
| MS.gene056097 | MS.gene21680 | 0.847925 | 8.49E-60 | -1.69E-46 |
| MS.gene056285 | MS.gene21680 | 0.840467 | 8.55E-58 | -1.69E-46 |
| MS.gene056752 | MS.gene21680 | 0.809443 | 1.89E-50 | -1.69E-46 |
| MS.gene057919 | MS.gene21680 | 0.803266 | 3.78E-49 | -1.69E-46 |
| MS.gene058261 | MS.gene21680 | 0.808826 | 2.56E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene21680 | 0.816158 | 6.39E-52 | -1.69E-46 |
| MS.gene058638 | MS.gene21680 | 0.84585 | 3.14E-59 | -1.69E-46 |
| MS.gene058639 | MS.gene21680 | 0.841876 | 3.64E-58 | -1.69E-46 |
| MS.gene058720 | MS.gene21680 | 0.801644 | 8.17E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene21680 | 0.825255 | 5.18E-54 | -1.69E-46 |
| MS.gene060563 | MS.gene21680 | 0.85513 | 7.76E-62 | -1.69E-46 |
| MS.gene060932 | MS.gene21680 | 0.801782 | 7.65E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21680 | MS.gene24159 | PPI |
| MS.gene21680 | MS.gene049065 | PPI |
| MS.gene21680 | MS.gene024702 | PPI |
| MS.gene024702 | MS.gene21680 | PPI |
| MS.gene21680 | MS.gene64012 | PPI |
| MS.gene21680 | MS.gene21950 | PPI |
| MS.gene21680 | MS.gene015822 | PPI |
| MS.gene64215 | MS.gene21680 | PPI |
| MS.gene22288 | MS.gene21680 | PPI |
| MS.gene05986 | MS.gene21680 | PPI |
| MS.gene21680 | MS.gene05986 | PPI |
| MS.gene27072 | MS.gene21680 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21680.t1 | MTR_5g009000 | 98.589 | 496 | 7 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1005 |
| MS.gene21680.t1 | MTR_8g102460 | 57.173 | 474 | 191 | 5 | 26 | 496 | 26 | 490 | 0.0 | 543 |
| MS.gene21680.t1 | MTR_8g014530 | 55.912 | 499 | 207 | 5 | 1 | 496 | 1 | 489 | 0.0 | 524 |
| MS.gene21680.t1 | MTR_6g088795 | 52.778 | 468 | 209 | 3 | 32 | 496 | 30 | 488 | 9.43e-176 | 503 |
| MS.gene21680.t1 | MTR_1g025140 | 49.582 | 478 | 223 | 6 | 26 | 496 | 24 | 490 | 2.02e-151 | 441 |
| MS.gene21680.t1 | MTR_8g102460 | 59.517 | 331 | 131 | 3 | 26 | 353 | 26 | 356 | 4.74e-139 | 405 |
| MS.gene21680.t1 | MTR_8g102460 | 55.769 | 364 | 149 | 5 | 136 | 496 | 1 | 355 | 2.83e-137 | 400 |
| MS.gene21680.t1 | MTR_1g025140 | 51.558 | 353 | 167 | 3 | 28 | 377 | 30 | 381 | 1.22e-117 | 351 |
| MS.gene21680.t1 | MTR_4g097900 | 40.809 | 272 | 113 | 3 | 222 | 492 | 3 | 227 | 3.94e-56 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21680.t1 | AT1G50460 | 71.822 | 472 | 130 | 3 | 25 | 494 | 25 | 495 | 0.0 | 697 |
| MS.gene21680.t1 | AT3G20040 | 66.935 | 496 | 158 | 3 | 1 | 494 | 1 | 492 | 0.0 | 627 |
| MS.gene21680.t1 | AT1G50460 | 70.792 | 404 | 115 | 3 | 93 | 494 | 17 | 419 | 0.0 | 586 |
| MS.gene21680.t1 | AT4G29130 | 55.912 | 499 | 208 | 3 | 1 | 496 | 1 | 490 | 0.0 | 539 |
| MS.gene21680.t1 | AT2G19860 | 55.912 | 499 | 208 | 3 | 1 | 496 | 1 | 490 | 0.0 | 536 |
| MS.gene21680.t1 | AT1G50460 | 73.333 | 330 | 87 | 1 | 25 | 353 | 25 | 354 | 3.99e-178 | 504 |
| MS.gene21680.t1 | AT1G47840 | 49.677 | 465 | 210 | 7 | 40 | 496 | 43 | 491 | 2.02e-145 | 426 |
| MS.gene21680.t1 | AT2G19860 | 53.213 | 389 | 170 | 3 | 111 | 496 | 2 | 381 | 6.92e-138 | 403 |
| MS.gene21680.t1 | AT1G47840 | 52.201 | 318 | 146 | 4 | 40 | 353 | 43 | 358 | 1.97e-104 | 317 |
| MS.gene21680.t1 | AT4G37840 | 39.331 | 478 | 267 | 7 | 22 | 493 | 22 | 482 | 4.03e-100 | 310 |
| MS.gene21680.t1 | AT1G47845 | 46.528 | 144 | 73 | 3 | 277 | 418 | 40 | 181 | 2.02e-34 | 128 |
Find 126 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCTTTAAACGAAATAT+TGG | 0.248960 | 5.2:+2748222 | MS.gene21680:CDS |
| CTAACCTGATCATTTGGATT+AGG | 0.252444 | 5.2:-2746760 | None:intergenic |
| CATATTATGCACTGCATCTT+GGG | 0.284030 | 5.2:+2745296 | MS.gene21680:CDS |
| GAAGCTTTAAACGAAATATT+GGG | 0.286275 | 5.2:+2748223 | MS.gene21680:CDS |
| TAACCTGATCATTTGGATTA+GGG | 0.298457 | 5.2:-2746759 | None:intergenic |
| TCAATGTCATACTGTGTTCT+TGG | 0.301091 | 5.2:-2746721 | None:intergenic |
| TCATTTCAGGACTCCTTTGA+TGG | 0.304467 | 5.2:+2747801 | MS.gene21680:intron |
| CTTGCCTTCAATGGAAGATC+TGG | 0.322162 | 5.2:-2747986 | None:intergenic |
| GAAACAGACATTTGTTTCAT+AGG | 0.324581 | 5.2:-2745641 | None:intergenic |
| CAGGAAGCATTTGCACGAAA+TGG | 0.346216 | 5.2:+2745900 | MS.gene21680:CDS |
| GGTGGCGGCGTGTGCGGTGG+CGG | 0.355755 | 5.2:+2743796 | MS.gene21680:CDS |
| AGATGTTGCAGCATGTTTGC+AGG | 0.362698 | 5.2:+2745881 | MS.gene21680:CDS |
| CCTTCTGTCCTGTGAAGTAT+TGG | 0.373474 | 5.2:-2745594 | None:intergenic |
| CCATATTATGCACTGCATCT+TGG | 0.373673 | 5.2:+2745295 | MS.gene21680:CDS |
| CCAAGATGCAGTGCATAATA+TGG | 0.382294 | 5.2:-2745295 | None:intergenic |
| CAGAACCTAACCTGATCATT+TGG | 0.382556 | 5.2:-2746766 | None:intergenic |
| GATTCCAGATCTTCCATTGA+AGG | 0.383594 | 5.2:+2747982 | MS.gene21680:intron |
| GTTGGCATCTTGAAGAAGAT+TGG | 0.393117 | 5.2:+2748076 | MS.gene21680:CDS |
| GTTGAAAGCTTCGAAGAAAT+AGG | 0.397856 | 5.2:-2746946 | None:intergenic |
| CCGAAGATGGATCAGGCATT+GGG | 0.399324 | 5.2:+2748281 | MS.gene21680:CDS |
| TTAGCAGCTGCTGGTATTGT+TGG | 0.409433 | 5.2:+2748058 | MS.gene21680:CDS |
| ATTCTTAATGTCACCGAAGA+TGG | 0.411432 | 5.2:+2748268 | MS.gene21680:CDS |
| TGATGCTATTATCAAGTGTC+AGG | 0.416448 | 5.2:+2746548 | MS.gene21680:CDS |
| TTAGGTTGTCAATATGGAAT+GGG | 0.425444 | 5.2:+2746675 | MS.gene21680:intron |
| GACGGCGACGGTGGCGGTGG+CGG | 0.428913 | 5.2:+2743781 | MS.gene21680:CDS |
| TCACTAGAGTCGGATATGTT+TGG | 0.429372 | 5.2:+2746922 | MS.gene21680:CDS |
| AACCCTCAACGACACCTTTG+AGG | 0.435865 | 5.2:+2747870 | MS.gene21680:CDS |
| GGGAGTGACGGCGACGGTGG+CGG | 0.445488 | 5.2:+2743775 | MS.gene21680:CDS |
| CTTGCTACTTCTATCAAGTC+AGG | 0.448747 | 5.2:-2747847 | None:intergenic |
| GGCGGCGTGTGCGGTGGCGG+CGG | 0.449757 | 5.2:+2743799 | MS.gene21680:CDS |
| GACGGGAGTGGTGGCATCAC+AGG | 0.450160 | 5.2:+2748103 | MS.gene21680:CDS |
| TACCTCAAAGGTGTCGTTGA+GGG | 0.450281 | 5.2:-2747872 | None:intergenic |
| GAAACAAATGTCTGTTTCCT+CGG | 0.450286 | 5.2:+2745646 | MS.gene21680:CDS |
| GAGTGAAGAGTAGAAGAAAG+TGG | 0.451502 | 5.2:+2743837 | MS.gene21680:CDS |
| GAAGATGGGAAGAGTGGTAG+TGG | 0.452894 | 5.2:+2743754 | None:intergenic |
| ACCACCTTCAGAAGCTAAAC+CGG | 0.457674 | 5.2:-2743960 | None:intergenic |
| TTTAGGTTGTCAATATGGAA+TGG | 0.460418 | 5.2:+2746674 | MS.gene21680:intron |
| TCACAGGACAGAAGGGAACT+TGG | 0.465295 | 5.2:+2745602 | MS.gene21680:CDS |
| GGTGGCGGTGGCGGCGTGTG+CGG | 0.466342 | 5.2:+2743790 | MS.gene21680:CDS |
| AGTGACGGCGACGGTGGCGG+TGG | 0.467501 | 5.2:+2743778 | MS.gene21680:CDS |
| CCCAATGCCTGATCCATCTT+CGG | 0.469673 | 5.2:-2748281 | None:intergenic |
| GAATTCATTGCTAAAGAAGA+TGG | 0.471311 | 5.2:+2745569 | MS.gene21680:CDS |
| AAACAGACATTTGTTTCATA+GGG | 0.475582 | 5.2:-2745640 | None:intergenic |
| GGCGGTGGCGGCGTGTGCGG+TGG | 0.477522 | 5.2:+2743793 | MS.gene21680:CDS |
| ACCGAAGATGGATCAGGCAT+TGG | 0.478914 | 5.2:+2748280 | MS.gene21680:CDS |
| ATACGAGTGTTGGAAGGTTA+AGG | 0.481037 | 5.2:+2743903 | MS.gene21680:CDS |
| CTGTTGGAACATTAGCTGTT+GGG | 0.486153 | 5.2:+2746451 | MS.gene21680:CDS |
| ATCAATTCGCTCCAAGTAGC+AGG | 0.487352 | 5.2:-2746529 | None:intergenic |
| TGGTACTAATGCCTGCTACT+TGG | 0.489030 | 5.2:+2746518 | MS.gene21680:CDS |
| AAGCAGGTTAATGATACTGT+TGG | 0.489212 | 5.2:+2746435 | MS.gene21680:intron |
| AGGCAGCTACATGCACATCT+AGG | 0.489720 | 5.2:-2745923 | None:intergenic |
| AAGCCCTAATCCAAATGATC+AGG | 0.491358 | 5.2:+2746756 | MS.gene21680:CDS |
| CAGGGTCTTCTTACAACATC+AGG | 0.499400 | 5.2:+2746567 | MS.gene21680:CDS |
| TGAAGAAGATTGGTCGTGAC+GGG | 0.506742 | 5.2:+2748086 | MS.gene21680:CDS |
| AGAACAGTTGTGGCAATTGA+AGG | 0.507809 | 5.2:+2748157 | MS.gene21680:CDS |
| AATGTCACCGAAGATGGATC+AGG | 0.512205 | 5.2:+2748274 | MS.gene21680:CDS |
| ACTGTTGCTGCAATAGTCAT+TGG | 0.514702 | 5.2:+2746492 | MS.gene21680:CDS |
| GTAACGCGGGTTCATTTAAG+TGG | 0.515646 | 5.2:+2745334 | MS.gene21680:CDS |
| TCGTGAGGAGAGTCATTCTC+AGG | 0.519035 | 5.2:+2746896 | MS.gene21680:CDS |
| AAACAAATGTCTGTTTCCTC+GGG | 0.521874 | 5.2:+2745647 | MS.gene21680:CDS |
| AAGGCAAGTGGTTGATGCTA+TGG | 0.522670 | 5.2:+2743922 | MS.gene21680:CDS |
| AGATGTGCATGTAGCTGCCT+TGG | 0.522932 | 5.2:+2745926 | MS.gene21680:CDS |
| ATGTTGATAATCTTCCTAAC+GGG | 0.524290 | 5.2:+2744008 | MS.gene21680:CDS |
| AGACATTTGTTTCATAGGGA+AGG | 0.529304 | 5.2:-2745636 | None:intergenic |
| GTCTGACTTATTTACCTCAA+AGG | 0.532138 | 5.2:-2747884 | None:intergenic |
| CTCTACTTCATGCTCAAGGA+CGG | 0.537992 | 5.2:-2745368 | None:intergenic |
| CCAATACTTCACAGGACAGA+AGG | 0.538946 | 5.2:+2745594 | MS.gene21680:CDS |
| CTTGTGCCAGTCATTAGATG+TGG | 0.540300 | 5.2:-2745406 | None:intergenic |
| GCTGCTCGATTAGCAGCTGC+TGG | 0.544833 | 5.2:+2748049 | MS.gene21680:CDS |
| AGTGGGAGTGACGGCGACGG+TGG | 0.547039 | 5.2:+2743772 | MS.gene21680:CDS |
| GCCGGTTTAGCTTCTGAAGG+TGG | 0.550536 | 5.2:+2743959 | MS.gene21680:CDS |
| TTTCAACGCCGTTCGTACTG+AGG | 0.551274 | 5.2:+2746962 | MS.gene21680:CDS |
| TATGTTGATAATCTTCCTAA+CGG | 0.553392 | 5.2:+2744007 | MS.gene21680:CDS |
| AAGCTTTAAACGAAATATTG+GGG | 0.554190 | 5.2:+2748224 | MS.gene21680:CDS |
| AAGATTGGTCGTGACGGGAG+TGG | 0.556777 | 5.2:+2748091 | MS.gene21680:CDS |
| GCATCACAGGTGGACGGAGT+AGG | 0.560009 | 5.2:+2748116 | MS.gene21680:CDS |
| ATATTATGCACTGCATCTTG+GGG | 0.566523 | 5.2:+2745297 | MS.gene21680:CDS |
| TCTACTTCATGCTCAAGGAC+GGG | 0.569738 | 5.2:-2745367 | None:intergenic |
| TTTGATGGCTGCCATGCATG+AGG | 0.574951 | 5.2:+2747816 | MS.gene21680:CDS |
| GTGTTGAAAGAGTTTGAAGA+AGG | 0.576656 | 5.2:+2743875 | MS.gene21680:CDS |
| TCTCAGGATGTCACTAGAGT+CGG | 0.577140 | 5.2:+2746912 | MS.gene21680:CDS |
| GTCGCTCTACTTCATGCTCA+AGG | 0.578601 | 5.2:-2745372 | None:intergenic |
| TAGGTTGTCAATATGGAATG+GGG | 0.578992 | 5.2:+2746676 | MS.gene21680:intron |
| ATGATATCAGGAATGTATCT+CGG | 0.579708 | 5.2:+2746868 | MS.gene21680:CDS |
| TCATGCATGGCAGCCATCAA+AGG | 0.579757 | 5.2:-2747814 | None:intergenic |
| TCATGCTCAAGGACGGGAGA+TGG | 0.579799 | 5.2:-2745361 | None:intergenic |
| GCTGCAATAGTCATTGGTAC+TGG | 0.581228 | 5.2:+2746498 | MS.gene21680:CDS |
| TGTTGGAAGGTTAAGGCAAG+TGG | 0.583503 | 5.2:+2743910 | MS.gene21680:CDS |
| TTGTGCCAGTCATTAGATGT+GGG | 0.585935 | 5.2:-2745405 | None:intergenic |
| AAGATGGGAAGAGTGGTAGT+GGG | 0.588287 | 5.2:+2743755 | None:intergenic |
| GTGGTGGCATCACAGGTGGA+CGG | 0.589673 | 5.2:+2748110 | MS.gene21680:CDS |
| CACGCCGGTTTAGCTTCTGA+AGG | 0.591635 | 5.2:+2743956 | MS.gene21680:CDS |
| TTGAAGAAGATTGGTCGTGA+CGG | 0.592268 | 5.2:+2748085 | MS.gene21680:CDS |
| AGATGGTTCCAATACTTCAC+AGG | 0.592323 | 5.2:+2745586 | MS.gene21680:CDS |
| GTGACTAACCATATCTACAA+TGG | 0.594940 | 5.2:-2745699 | None:intergenic |
| GTTAGGAAGATTATCAACAT+AGG | 0.595626 | 5.2:-2744005 | None:intergenic |
| AGTGGTTGATGCTATGGCGG+TGG | 0.596296 | 5.2:+2743928 | MS.gene21680:CDS |
| ATTGGTCGTGACGGGAGTGG+TGG | 0.597920 | 5.2:+2748094 | MS.gene21680:CDS |
| GAAGGTTGTGATACGAGTGT+TGG | 0.604021 | 5.2:+2743893 | MS.gene21680:CDS |
| GTTGTGATACGAGTGTTGGA+AGG | 0.610760 | 5.2:+2743897 | MS.gene21680:CDS |
| GGGAGTGGTGGCATCACAGG+TGG | 0.611199 | 5.2:+2748106 | MS.gene21680:CDS |
| ACAGTTGTGGCAATTGAAGG+AGG | 0.611717 | 5.2:+2748160 | MS.gene21680:CDS |
| ACTGTTGGAACATTAGCTGT+TGG | 0.612811 | 5.2:+2746450 | MS.gene21680:CDS |
| AGGTTGTCAATATGGAATGG+GGG | 0.613620 | 5.2:+2746677 | MS.gene21680:intron |
| AGGTGAATCATCCTCATGCA+TGG | 0.614958 | 5.2:-2747827 | None:intergenic |
| GTGCCAGTCATTAGATGTGG+GGG | 0.615915 | 5.2:-2745403 | None:intergenic |
| GTGTGATGTGGTGACTCGTA+GGG | 0.616871 | 5.2:+2748027 | MS.gene21680:CDS |
| TCTAATGACTGGCACAAGCA+AGG | 0.620748 | 5.2:+2745411 | MS.gene21680:CDS |
| TGTATCTCGGTGACATCGTG+AGG | 0.623745 | 5.2:+2746881 | MS.gene21680:CDS |
| ATCGGTGAAGATGGGAAGAG+TGG | 0.624776 | 5.2:+2743748 | None:intergenic |
| TGTGTGATGTGGTGACTCGT+AGG | 0.625058 | 5.2:+2748026 | MS.gene21680:CDS |
| AAGAGTGGTAGTGGGAGTGA+CGG | 0.625333 | 5.2:+2743763 | MS.gene21680:CDS |
| CGAAGATGGATCAGGCATTG+GGG | 0.630238 | 5.2:+2748282 | MS.gene21680:CDS |
| TCTTACAACATCAGGACGCA+TGG | 0.630747 | 5.2:+2746575 | MS.gene21680:CDS |
| CAATACTTCACAGGACAGAA+GGG | 0.631867 | 5.2:+2745595 | MS.gene21680:CDS |
| GATGCTATTATCAAGTGTCA+GGG | 0.635033 | 5.2:+2746549 | MS.gene21680:CDS |
| TTACCTCAAAGGTGTCGTTG+AGG | 0.645156 | 5.2:-2747873 | None:intergenic |
| ATGGCGGTGGAGATGCACGC+CGG | 0.645387 | 5.2:+2743941 | MS.gene21680:CDS |
| CCACTTGATTAAAATGCCCG+AGG | 0.646430 | 5.2:-2745663 | None:intergenic |
| TGTTGTGAAGGTGTGTGATG+TGG | 0.646930 | 5.2:+2748015 | MS.gene21680:CDS |
| GGTAGTGGGAGTGACGGCGA+CGG | 0.652117 | 5.2:+2743769 | MS.gene21680:CDS |
| TATTATGCACTGCATCTTGG+GGG | 0.675086 | 5.2:+2745298 | MS.gene21680:CDS |
| GGTACAAACCTCAGTACGAA+CGG | 0.676112 | 5.2:-2746970 | None:intergenic |
| AGCTTTAAACGAAATATTGG+GGG | 0.680619 | 5.2:+2748225 | MS.gene21680:CDS |
| GCAAGTGGTTGATGCTATGG+CGG | 0.693157 | 5.2:+2743925 | MS.gene21680:CDS |
| TGTGCCAGTCATTAGATGTG+GGG | 0.693796 | 5.2:-2745404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAGATATCTTAATT+TGG | + | chr5.2:2746327-2746346 | MS.gene21680:intron | 10.0% |
| !! | AGTAATATAATGAAACAAAT+AGG | - | chr5.2:2746389-2746408 | None:intergenic | 15.0% |
| !! | TAAATGATAATAGTTGTAAA+TGG | + | chr5.2:2746240-2746259 | MS.gene21680:intron | 15.0% |
| !! | TTAATTCTATAATAGTGAAA+TGG | + | chr5.2:2746213-2746232 | MS.gene21680:intron | 15.0% |
| !! | TTCAATGTCTAAAAAAATTA+AGG | - | chr5.2:2747247-2747266 | None:intergenic | 15.0% |
| !!! | AAAAGTTTTTGTATAAAAGA+AGG | - | chr5.2:2746195-2746214 | None:intergenic | 15.0% |
| !!! | AGTTCTTATTTTTCATTTTT+GGG | + | chr5.2:2746617-2746636 | MS.gene21680:intron | 15.0% |
| !!! | GTTTTTTGATTTATTATGTT+TGG | + | chr5.2:2744152-2744171 | MS.gene21680:intron | 15.0% |
| !!! | TCTTAATTGATCTTTAAAAT+TGG | + | chr5.2:2745729-2745748 | MS.gene21680:intron | 15.0% |
| !! | AAAACCATATATCTTGTATT+TGG | + | chr5.2:2747951-2747970 | MS.gene21680:intron | 20.0% |
| !! | AAACAAACCAATTTAACAAA+AGG | - | chr5.2:2745248-2745267 | None:intergenic | 20.0% |
| !! | ACTATTAACTTAGTTAATGA+AGG | - | chr5.2:2747291-2747310 | None:intergenic | 20.0% |
| !! | CTATTAACTTAGTTAATGAA+GGG | - | chr5.2:2747290-2747309 | None:intergenic | 20.0% |
| !! | GAAAAACAAATCATACAATT+AGG | - | chr5.2:2745972-2745991 | None:intergenic | 20.0% |
| !! | TGTTCTGTTATTCAATAAAA+AGG | + | chr5.2:2747061-2747080 | MS.gene21680:intron | 20.0% |
| !! | TTTAACGTTATTACATGAAA+AGG | - | chr5.2:2745497-2745516 | None:intergenic | 20.0% |
| !!! | ATGTTTTTGATCTAAATGTA+AGG | + | chr5.2:2746127-2746146 | MS.gene21680:intron | 20.0% |
| !!! | ATTTGTTATGACTAAAACTT+TGG | + | chr5.2:2746819-2746838 | MS.gene21680:intron | 20.0% |
| !!! | CAGTTCTTATTTTTCATTTT+TGG | + | chr5.2:2746616-2746635 | MS.gene21680:intron | 20.0% |
| !!! | GTCATTTTCTCAAATTTTAT+CGG | + | chr5.2:2744777-2744796 | MS.gene21680:intron | 20.0% |
| !!! | TATATGGTTTTTAGATTTAC+AGG | - | chr5.2:2747942-2747961 | None:intergenic | 20.0% |
| !!! | TTTTTGATTTCATTTTAAGC+AGG | + | chr5.2:2746419-2746438 | MS.gene21680:intron | 20.0% |
| ! | AAAAATGAAAAGAACAGTTG+TGG | + | chr5.2:2748147-2748166 | MS.gene21680:CDS | 25.0% |
| ! | AAACAAAAAATGTCAGCATT+TGG | - | chr5.2:2744136-2744155 | None:intergenic | 25.0% |
| ! | AAACAGACATTTGTTTCATA+GGG | - | chr5.2:2745643-2745662 | None:intergenic | 25.0% |
| ! | AACAAAAACATAGACAAAAC+TGG | - | chr5.2:2744212-2744231 | None:intergenic | 25.0% |
| ! | ACAAAAACATAGACAAAACT+GGG | - | chr5.2:2744211-2744230 | None:intergenic | 25.0% |
| ! | GGATTTGGACATTTAATAAA+TGG | + | chr5.2:2744412-2744431 | MS.gene21680:intron | 25.0% |
| ! | TATGTATTATACCTTAATCC+CGG | - | chr5.2:2746049-2746068 | None:intergenic | 25.0% |
| ! | TATTCAATAAAAAGGCAATC+TGG | + | chr5.2:2747069-2747088 | MS.gene21680:intron | 25.0% |
| ! | TGTTTATGGAAAATGTACTT+TGG | + | chr5.2:2744391-2744410 | MS.gene21680:intron | 25.0% |
| ! | TTCAATGTAATCATATGTGT+CGG | - | chr5.2:2744753-2744772 | None:intergenic | 25.0% |
| !! | AAATTGAATTTTATGCTTGC+AGG | + | chr5.2:2745514-2745533 | MS.gene21680:intron | 25.0% |
| !! | AATTGACTTTGCTATAAACT+TGG | + | chr5.2:2747480-2747499 | MS.gene21680:intron | 25.0% |
| !! | ATTTTTCTTTTAGCACACAA+GGG | + | chr5.2:2747435-2747454 | MS.gene21680:intron | 25.0% |
| !! | TATTTTTCTTTTAGCACACA+AGG | + | chr5.2:2747434-2747453 | MS.gene21680:intron | 25.0% |
| !! | TTTCTCAAATTTTATCGGTA+TGG | + | chr5.2:2744782-2744801 | MS.gene21680:intron | 25.0% |
| !! | TTTTAATCAAGTGGACAAAA+GGG | + | chr5.2:2745672-2745691 | MS.gene21680:CDS | 25.0% |
| !!! | AAGCTTTAAACGAAATATTG+GGG | + | chr5.2:2748224-2748243 | MS.gene21680:CDS | 25.0% |
| !!! | ATTTTAATCAAGTGGACAAA+AGG | + | chr5.2:2745671-2745690 | MS.gene21680:CDS | 25.0% |
| !!! | CATATTTTTTGTCCCTAAAT+GGG | + | chr5.2:2747909-2747928 | MS.gene21680:intron | 25.0% |
| !!! | GAAGCTTTAAACGAAATATT+GGG | + | chr5.2:2748223-2748242 | MS.gene21680:CDS | 25.0% |
| !!! | TATGTTGATAATCTTCCTAA+CGG | + | chr5.2:2744007-2744026 | MS.gene21680:CDS | 25.0% |
| !!! | TGAAGCTTTAAACGAAATAT+TGG | + | chr5.2:2748222-2748241 | MS.gene21680:CDS | 25.0% |
| !!! | TTTTTTATCAGTACTGAGAA+AGG | + | chr5.2:2745271-2745290 | MS.gene21680:intron | 25.0% |
| ACAGCCAAATACAAGATATA+TGG | - | chr5.2:2747958-2747977 | None:intergenic | 30.0% | |
| ACCAAATCTTGCTAAAGATA+AGG | - | chr5.2:2745162-2745181 | None:intergenic | 30.0% | |
| ACCAATTTAACAAAAGGACT+CGG | - | chr5.2:2745242-2745261 | None:intergenic | 30.0% | |
| AGAGAAAAACAATCTGTTGA+AGG | - | chr5.2:2746096-2746115 | None:intergenic | 30.0% | |
| AGTCTATGACAGCTATTTAT+TGG | + | chr5.2:2744964-2744983 | MS.gene21680:intron | 30.0% | |
| ATCAAAACAAGAAAAGCCAA+AGG | - | chr5.2:2747524-2747543 | None:intergenic | 30.0% | |
| ATCAAGCAACAAAAGTCATT+AGG | - | chr5.2:2746794-2746813 | None:intergenic | 30.0% | |
| ATCTTGGTTATACAAAGCAT+TGG | + | chr5.2:2747161-2747180 | MS.gene21680:intron | 30.0% | |
| ATGATATCAGGAATGTATCT+CGG | + | chr5.2:2746868-2746887 | MS.gene21680:CDS | 30.0% | |
| ATTGAATAACAGAACACATC+TGG | - | chr5.2:2747057-2747076 | None:intergenic | 30.0% | |
| CAAATCATACAATTAGGCTA+AGG | - | chr5.2:2745966-2745985 | None:intergenic | 30.0% | |
| CATATTGACAACCTAAAAGA+CGG | - | chr5.2:2746671-2746690 | None:intergenic | 30.0% | |
| CCATTTAGGGACAAAAAATA+TGG | - | chr5.2:2747911-2747930 | None:intergenic | 30.0% | |
| GAAACAGACATTTGTTTCAT+AGG | - | chr5.2:2745644-2745663 | None:intergenic | 30.0% | |
| GAATTCATTGCTAAAGAAGA+TGG | + | chr5.2:2745569-2745588 | MS.gene21680:CDS | 30.0% | |
| GATTGATAGATTGTGTGTTT+GGG | + | chr5.2:2744900-2744919 | MS.gene21680:intron | 30.0% | |
| GCTGATAAGATATATTTCCT+TGG | + | chr5.2:2747705-2747724 | MS.gene21680:intron | 30.0% | |
| GGAAAACATACTTGATACTA+TGG | + | chr5.2:2747031-2747050 | MS.gene21680:intron | 30.0% | |
| GTCTATGACAGCTATTTATT+GGG | + | chr5.2:2744965-2744984 | MS.gene21680:intron | 30.0% | |
| GTGTACATAGAATAGAATAC+AGG | - | chr5.2:2747600-2747619 | None:intergenic | 30.0% | |
| GTTAGGAAGATTATCAACAT+AGG | - | chr5.2:2744008-2744027 | None:intergenic | 30.0% | |
| TAACCTGATCATTTGGATTA+GGG | - | chr5.2:2746762-2746781 | None:intergenic | 30.0% | |
| TAGCTGCATCATATTCTTAA+TGG | + | chr5.2:2748314-2748333 | MS.gene21680:CDS | 30.0% | |
| TATGTATGACCAATGTCTTT+AGG | + | chr5.2:2747010-2747029 | MS.gene21680:intron | 30.0% | |
| TATGTTTCATGCACTACAAT+TGG | - | chr5.2:2747342-2747361 | None:intergenic | 30.0% | |
| TCAAATTCAAACCAGAGATT+TGG | - | chr5.2:2747768-2747787 | None:intergenic | 30.0% | |
| TCCTTATCTTTAGCAAGATT+TGG | + | chr5.2:2745158-2745177 | MS.gene21680:intron | 30.0% | |
| TGATCAAAACCCTAAAACTT+TGG | + | chr5.2:2745439-2745458 | MS.gene21680:intron | 30.0% | |
| TGATTGATAGATTGTGTGTT+TGG | + | chr5.2:2744899-2744918 | MS.gene21680:intron | 30.0% | |
| TGGAAAATGTACTTTGGATT+TGG | + | chr5.2:2744397-2744416 | MS.gene21680:intron | 30.0% | |
| TTGATAGATTGTGTTTGGAT+TGG | + | chr5.2:2744513-2744532 | MS.gene21680:intron | 30.0% | |
| ! | ACAATTTTTCTTGCCTTCAA+TGG | - | chr5.2:2747998-2748017 | None:intergenic | 30.0% |
| ! | ACCTATTGTTGTTCTATTGT+AGG | + | chr5.2:2747131-2747150 | MS.gene21680:intron | 30.0% |
| ! | CAGAGAAAACCAAAGTTTTA+GGG | - | chr5.2:2745451-2745470 | None:intergenic | 30.0% |
| ! | GACTAAAACTTTGGTGATTT+GGG | + | chr5.2:2746828-2746847 | MS.gene21680:intron | 30.0% |
| ! | GCTTGTTTGGTAACTATTTA+TGG | - | chr5.2:2745773-2745792 | None:intergenic | 30.0% |
| ! | GTATGTTTTCCTAAAGACAT+TGG | - | chr5.2:2747022-2747041 | None:intergenic | 30.0% |
| ! | TAATTTGCAAGCTGTAAGAA+TGG | + | chr5.2:2744490-2744509 | MS.gene21680:intron | 30.0% |
| ! | TGACTAAAACTTTGGTGATT+TGG | + | chr5.2:2746827-2746846 | MS.gene21680:intron | 30.0% |
| ! | TTAGGTTGTCAATATGGAAT+GGG | + | chr5.2:2746675-2746694 | MS.gene21680:intron | 30.0% |
| ! | TTTTTCTTTTAGCACACAAG+GGG | + | chr5.2:2747436-2747455 | MS.gene21680:intron | 30.0% |
| !! | AATGGTTGATAGATTGTGTT+TGG | + | chr5.2:2744508-2744527 | MS.gene21680:intron | 30.0% |
| !! | AATTTGGTGTGAAGGAAAAT+GGG | + | chr5.2:2746343-2746362 | MS.gene21680:intron | 30.0% |
| !! | AGCTTTAAACGAAATATTGG+GGG | + | chr5.2:2748225-2748244 | MS.gene21680:CDS | 30.0% |
| !! | ATGTTGATAATCTTCCTAAC+GGG | + | chr5.2:2744008-2744027 | MS.gene21680:CDS | 30.0% |
| !! | CAACAGATTGTTTTTCTCTA+GGG | + | chr5.2:2746097-2746116 | MS.gene21680:intron | 30.0% |
| !! | GAACTTATTTTCCGTCTTTT+AGG | + | chr5.2:2746657-2746676 | MS.gene21680:intron | 30.0% |
| !! | GATATCTTAATTTGGTGTGA+AGG | + | chr5.2:2746335-2746354 | MS.gene21680:intron | 30.0% |
| !! | GTTATACAAAGCATTGGAAA+AGG | + | chr5.2:2747167-2747186 | MS.gene21680:intron | 30.0% |
| !! | TAATTTGGTGTGAAGGAAAA+TGG | + | chr5.2:2746342-2746361 | MS.gene21680:intron | 30.0% |
| !! | TATTGTAGGCAGTTTTATCT+TGG | + | chr5.2:2747145-2747164 | MS.gene21680:intron | 30.0% |
| !! | TCAACAGATTGTTTTTCTCT+AGG | + | chr5.2:2746096-2746115 | MS.gene21680:intron | 30.0% |
| !! | TGGTTTTTAGATTTACAGGA+AGG | - | chr5.2:2747938-2747957 | None:intergenic | 30.0% |
| !! | TTTAGGTTGTCAATATGGAA+TGG | + | chr5.2:2746674-2746693 | MS.gene21680:intron | 30.0% |
| !!! | ATTGTGTTTGGATTGGTTTT+GGG | + | chr5.2:2744520-2744539 | MS.gene21680:intron | 30.0% |
| !!! | CCATATTTTTTGTCCCTAAA+TGG | + | chr5.2:2747908-2747927 | MS.gene21680:intron | 30.0% |
| !!! | GGTTTTGAGAAAATGATATC+AGG | + | chr5.2:2746856-2746875 | MS.gene21680:CDS | 30.0% |
| AAACAAATGTCTGTTTCCTC+GGG | + | chr5.2:2745647-2745666 | MS.gene21680:CDS | 35.0% | |
| AAACATAGACAAAACTGGGA+AGG | - | chr5.2:2744207-2744226 | None:intergenic | 35.0% | |
| AAACCAAGTGCAACTTGAAT+AGG | - | chr5.2:2745804-2745823 | None:intergenic | 35.0% | |
| AACCTGACAACAAATAGCTT+TGG | - | chr5.2:2745856-2745875 | None:intergenic | 35.0% | |
| AAGCAGGTTAATGATACTGT+TGG | + | chr5.2:2746435-2746454 | MS.gene21680:intron | 35.0% | |
| AAGCATCTCTTATGTGTCTA+GGG | + | chr5.2:2747099-2747118 | MS.gene21680:intron | 35.0% | |
| ACCTGACAACAAATAGCTTT+GGG | - | chr5.2:2745855-2745874 | None:intergenic | 35.0% | |
| AGAAAAAGTGATTACCCGTT+AGG | - | chr5.2:2744025-2744044 | None:intergenic | 35.0% | |
| AGACATTTGTTTCATAGGGA+AGG | - | chr5.2:2745639-2745658 | None:intergenic | 35.0% | |
| AGTAGCATATACAAATCCAC+CGG | - | chr5.2:2745112-2745131 | None:intergenic | 35.0% | |
| ATAGGACATACATGCTTGTT+TGG | - | chr5.2:2745786-2745805 | None:intergenic | 35.0% | |
| ATATTATGCACTGCATCTTG+GGG | + | chr5.2:2745297-2745316 | MS.gene21680:CDS | 35.0% | |
| ATGACAGCTATTTATTGGGA+TGG | + | chr5.2:2744969-2744988 | MS.gene21680:intron | 35.0% | |
| ATTCTTAATGTCACCGAAGA+TGG | + | chr5.2:2748268-2748287 | MS.gene21680:CDS | 35.0% | |
| CATACAATTAGGCTAAGGAA+AGG | - | chr5.2:2745961-2745980 | None:intergenic | 35.0% | |
| CATAGTGTATGACTGAGAAT+CGG | - | chr5.2:2746994-2747013 | None:intergenic | 35.0% | |
| CATATTATGCACTGCATCTT+GGG | + | chr5.2:2745296-2745315 | MS.gene21680:CDS | 35.0% | |
| CTAACCTGATCATTTGGATT+AGG | - | chr5.2:2746763-2746782 | None:intergenic | 35.0% | |
| CTAATCCAAATGATCAGGTT+AGG | + | chr5.2:2746761-2746780 | MS.gene21680:intron | 35.0% | |
| CTTTCTTTCATATCCTCTTG+TGG | + | chr5.2:2747385-2747404 | MS.gene21680:intron | 35.0% | |
| GAAAAACAATCTGTTGAAGG+CGG | - | chr5.2:2746093-2746112 | None:intergenic | 35.0% | |
| GAAACAAATGTCTGTTTCCT+CGG | + | chr5.2:2745646-2745665 | MS.gene21680:CDS | 35.0% | |
| GATGCTATTATCAAGTGTCA+GGG | + | chr5.2:2746549-2746568 | MS.gene21680:CDS | 35.0% | |
| GCAATGAAAAACACCTAACA+TGG | - | chr5.2:2744306-2744325 | None:intergenic | 35.0% | |
| GCCTACAATAGAACAACAAT+AGG | - | chr5.2:2747135-2747154 | None:intergenic | 35.0% | |
| GGCAAGAAAAATTGTTGTGA+AGG | + | chr5.2:2748003-2748022 | MS.gene21680:CDS | 35.0% | |
| GTCTGACTTATTTACCTCAA+AGG | - | chr5.2:2747887-2747906 | None:intergenic | 35.0% | |
| GTGACTAACCATATCTACAA+TGG | - | chr5.2:2745702-2745721 | None:intergenic | 35.0% | |
| GTGTTGAAAGAGTTTGAAGA+AGG | + | chr5.2:2743875-2743894 | MS.gene21680:CDS | 35.0% | |
| GTTGAAAGCTTCGAAGAAAT+AGG | - | chr5.2:2746949-2746968 | None:intergenic | 35.0% | |
| GTTGTCTATTTCATGCTTTC+TGG | + | chr5.2:2744276-2744295 | MS.gene21680:intron | 35.0% | |
| TAGGTTGTCAATATGGAATG+GGG | + | chr5.2:2746676-2746695 | MS.gene21680:intron | 35.0% | |
| TATGAAGCACATATACTCCT+CGG | + | chr5.2:2744673-2744692 | MS.gene21680:intron | 35.0% | |
| TCAATGTCATACTGTGTTCT+TGG | - | chr5.2:2746724-2746743 | None:intergenic | 35.0% | |
| TGACAGCTATTTATTGGGAT+GGG | + | chr5.2:2744970-2744989 | MS.gene21680:intron | 35.0% | |
| TGATGCTATTATCAAGTGTC+AGG | + | chr5.2:2746548-2746567 | MS.gene21680:CDS | 35.0% | |
| TGGAACATTGTAGTTATCCA+AGG | - | chr5.2:2747725-2747744 | None:intergenic | 35.0% | |
| TTACATATGACAACTGCCTT+TGG | + | chr5.2:2747505-2747524 | MS.gene21680:intron | 35.0% | |
| TTGCCTTATACTTACACAAC+CGG | + | chr5.2:2746027-2746046 | MS.gene21680:intron | 35.0% | |
| TTGCTTTCAGAGGGAAATAT+TGG | - | chr5.2:2746004-2746023 | None:intergenic | 35.0% | |
| TTGTAGTGCATGAAACATAG+TGG | + | chr5.2:2747343-2747362 | MS.gene21680:intron | 35.0% | |
| ! | AAAGCATCTCTTATGTGTCT+AGG | + | chr5.2:2747098-2747117 | MS.gene21680:intron | 35.0% |
| ! | ACCGAGTCCTTTTGTTAAAT+TGG | + | chr5.2:2745238-2745257 | MS.gene21680:intron | 35.0% |
| ! | AGGGTTTTCCATTGTAGATA+TGG | + | chr5.2:2745691-2745710 | MS.gene21680:CDS | 35.0% |
| ! | AGGTGATTCATGATTTGTGT+CGG | + | chr5.2:2744845-2744864 | MS.gene21680:intron | 35.0% |
| ! | ATCTTGGGGGAACAAATTTT+AGG | + | chr5.2:2745311-2745330 | MS.gene21680:CDS | 35.0% |
| ! | GCAGAGAAAACCAAAGTTTT+AGG | - | chr5.2:2745452-2745471 | None:intergenic | 35.0% |
| ! | TCTGAAACTCTTGTCATTTC+AGG | + | chr5.2:2747788-2747807 | MS.gene21680:intron | 35.0% |
| ! | TCTTGGGGGAACAAATTTTA+GGG | + | chr5.2:2745312-2745331 | MS.gene21680:CDS | 35.0% |
| !! | AAAGCTATTTGTTGTCAGGT+TGG | + | chr5.2:2745855-2745874 | MS.gene21680:intron | 35.0% |
| !! | GTTCAACAGTGTCATTTCAA+CGG | + | chr5.2:2744174-2744193 | MS.gene21680:intron | 35.0% |
| !!! | AACAAATTTTAGGGTAACGC+GGG | + | chr5.2:2745321-2745340 | MS.gene21680:CDS | 35.0% |
| !!! | ATGCACAGTTTGTTTTTTCC+TGG | + | chr5.2:2747641-2747660 | MS.gene21680:intron | 35.0% |
| !!! | CGTCTTTTAGGTTGTCAATA+TGG | + | chr5.2:2746669-2746688 | MS.gene21680:intron | 35.0% |
| !!! | GAACAAATTTTAGGGTAACG+CGG | + | chr5.2:2745320-2745339 | MS.gene21680:CDS | 35.0% |
| !!! | GATTGTGTTTGGATTGGTTT+TGG | + | chr5.2:2744519-2744538 | MS.gene21680:intron | 35.0% |
| !!! | GTTTTTTCCTGGAGTATTTG+AGG | + | chr5.2:2747652-2747671 | MS.gene21680:intron | 35.0% |
| AAGCCCTAATCCAAATGATC+AGG | + | chr5.2:2746756-2746775 | MS.gene21680:CDS | 40.0% | |
| AATGCCAACCAGTAAATAGC+TGG | - | chr5.2:2744586-2744605 | None:intergenic | 40.0% | |
| ACACTCGAACATTTGTTTGC+TGG | + | chr5.2:2747569-2747588 | MS.gene21680:intron | 40.0% | |
| ACTAGATCTGCCAATCAAGA+AGG | + | chr5.2:2745081-2745100 | MS.gene21680:intron | 40.0% | |
| ACTGTTGCTGCAATAGTCAT+TGG | + | chr5.2:2746492-2746511 | MS.gene21680:CDS | 40.0% | |
| ACTGTTGGAACATTAGCTGT+TGG | + | chr5.2:2746450-2746469 | MS.gene21680:CDS | 40.0% | |
| AGAACAGTTGTGGCAATTGA+AGG | + | chr5.2:2748157-2748176 | MS.gene21680:CDS | 40.0% | |
| AGATGGTTCCAATACTTCAC+AGG | + | chr5.2:2745586-2745605 | MS.gene21680:CDS | 40.0% | |
| AGGAAAGGAATTCCTTACCA+AGG | - | chr5.2:2745946-2745965 | None:intergenic | 40.0% | |
| AGGTTGTCAATATGGAATGG+GGG | + | chr5.2:2746677-2746696 | MS.gene21680:intron | 40.0% | |
| AGTCTATGCCAGCTATTTAC+TGG | + | chr5.2:2744575-2744594 | MS.gene21680:intron | 40.0% | |
| ATCCCGGTTGTGTAAGTATA+AGG | - | chr5.2:2746033-2746052 | None:intergenic | 40.0% | |
| CAATAAAAAGGCAATCTGGC+AGG | + | chr5.2:2747073-2747092 | MS.gene21680:intron | 40.0% | |
| CAATACTTCACAGGACAGAA+GGG | + | chr5.2:2745595-2745614 | MS.gene21680:CDS | 40.0% | |
| CAGAACCTAACCTGATCATT+TGG | - | chr5.2:2746769-2746788 | None:intergenic | 40.0% | |
| CATGAATCACCTATGAAGCA+TGG | - | chr5.2:2744837-2744856 | None:intergenic | 40.0% | |
| CCAAGATGCAGTGCATAATA+TGG | - | chr5.2:2745298-2745317 | None:intergenic | 40.0% | |
| CCATATTATGCACTGCATCT+TGG | + | chr5.2:2745295-2745314 | MS.gene21680:CDS | 40.0% | |
| CTGTTGGAACATTAGCTGTT+GGG | + | chr5.2:2746451-2746470 | MS.gene21680:CDS | 40.0% | |
| CTTGCTAAAGATAAGGAGTG+CGG | - | chr5.2:2745155-2745174 | None:intergenic | 40.0% | |
| GAGTGAAGAGTAGAAGAAAG+TGG | + | chr5.2:2743837-2743856 | MS.gene21680:CDS | 40.0% | |
| GATAGATTGTGTGTTTGGGT+TGG | + | chr5.2:2744904-2744923 | MS.gene21680:intron | 40.0% | |
| GATTAGGTGTGTCCTTATGT+CGG | + | chr5.2:2744695-2744714 | MS.gene21680:intron | 40.0% | |
| GATTCCAGATCTTCCATTGA+AGG | + | chr5.2:2747982-2748001 | MS.gene21680:intron | 40.0% | |
| GTAGCATATACAAATCCACC+GGG | - | chr5.2:2745111-2745130 | None:intergenic | 40.0% | |
| GTTGGCATCTTGAAGAAGAT+TGG | + | chr5.2:2748076-2748095 | MS.gene21680:CDS | 40.0% | |
| TACTTACACAACCGGGATTA+AGG | + | chr5.2:2746035-2746054 | MS.gene21680:intron | 40.0% | |
| TATGCCAGCTATTTACTGGT+TGG | + | chr5.2:2744579-2744598 | MS.gene21680:intron | 40.0% | |
| TATTATGCACTGCATCTTGG+GGG | + | chr5.2:2745298-2745317 | MS.gene21680:CDS | 40.0% | |
| TCACTAGAGTCGGATATGTT+TGG | + | chr5.2:2746922-2746941 | MS.gene21680:CDS | 40.0% | |
| TCATTTCAGGACTCCTTTGA+TGG | + | chr5.2:2747801-2747820 | MS.gene21680:intron | 40.0% | |
| TCTCTTATGTGTCTAGGGAA+AGG | + | chr5.2:2747104-2747123 | MS.gene21680:intron | 40.0% | |
| TGCCTTATACTTACACAACC+GGG | + | chr5.2:2746028-2746047 | MS.gene21680:intron | 40.0% | |
| TTGTGCCAGTCATTAGATGT+GGG | - | chr5.2:2745408-2745427 | None:intergenic | 40.0% | |
| ! | AGTCGTCTTATTACCACAAG+AGG | - | chr5.2:2747401-2747420 | None:intergenic | 40.0% |
| ! | ATATGGAATGGGGGAACTTT+TGG | + | chr5.2:2746686-2746705 | MS.gene21680:CDS | 40.0% |
| ! | CAGCCTATGCATCATTTTCA+CGG | - | chr5.2:2747689-2747708 | None:intergenic | 40.0% |
| ! | CTTAGTTAATGAAGGGCGTA+TGG | - | chr5.2:2747283-2747302 | None:intergenic | 40.0% |
| ! | CTTGCTACTTCTATCAAGTC+AGG | - | chr5.2:2747850-2747869 | None:intergenic | 40.0% |
| ! | TTGAAGAAGATTGGTCGTGA+CGG | + | chr5.2:2748085-2748104 | MS.gene21680:CDS | 40.0% |
| !! | ACCCAAAGCTATTTGTTGTC+AGG | + | chr5.2:2745851-2745870 | MS.gene21680:intron | 40.0% |
| !! | ATACGAGTGTTGGAAGGTTA+AGG | + | chr5.2:2743903-2743922 | MS.gene21680:CDS | 40.0% |
| !! | TCACTTTTCGCAAAGCAAAC+CGG | - | chr5.2:2744648-2744667 | None:intergenic | 40.0% |
| !! | TGTCCTATTCAAGTTGCACT+TGG | + | chr5.2:2745798-2745817 | MS.gene21680:intron | 40.0% |
| AATGTCACCGAAGATGGATC+AGG | + | chr5.2:2748274-2748293 | MS.gene21680:CDS | 45.0% | |
| ACAGGAAGGACACCCATTTA+GGG | - | chr5.2:2747924-2747943 | None:intergenic | 45.0% | |
| ACAGTTGTGGCAATTGAAGG+AGG | + | chr5.2:2748160-2748179 | MS.gene21680:CDS | 45.0% | |
| ACCACCTTCAGAAGCTAAAC+CGG | - | chr5.2:2743963-2743982 | None:intergenic | 45.0% | |
| AGATGTTGCAGCATGTTTGC+AGG | + | chr5.2:2745881-2745900 | MS.gene21680:CDS | 45.0% | |
| AGGTGAATCATCCTCATGCA+TGG | - | chr5.2:2747830-2747849 | None:intergenic | 45.0% | |
| ATAAGGACACACCTAATCCG+AGG | - | chr5.2:2744693-2744712 | None:intergenic | 45.0% | |
| ATCAATTCGCTCCAAGTAGC+AGG | - | chr5.2:2746532-2746551 | None:intergenic | 45.0% | |
| ATTCCCCCACATCTAATGAC+TGG | + | chr5.2:2745400-2745419 | MS.gene21680:CDS | 45.0% | |
| CAGCTAGAACCAACAATGCA+TGG | - | chr5.2:2745030-2745049 | None:intergenic | 45.0% | |
| CAGGGTCTTCTTACAACATC+AGG | + | chr5.2:2746567-2746586 | MS.gene21680:CDS | 45.0% | |
| CATGTCACCTCAAATACTCC+AGG | - | chr5.2:2747662-2747681 | None:intergenic | 45.0% | |
| CCAATACTTCACAGGACAGA+AGG | + | chr5.2:2745594-2745613 | MS.gene21680:CDS | 45.0% | |
| CCACTTGATTAAAATGCCCG+AGG | - | chr5.2:2745666-2745685 | None:intergenic | 45.0% | |
| CCTTCTGTCCTGTGAAGTAT+TGG | - | chr5.2:2745597-2745616 | None:intergenic | 45.0% | |
| CTCTACTTCATGCTCAAGGA+CGG | - | chr5.2:2745371-2745390 | None:intergenic | 45.0% | |
| CTTGCCTTCAATGGAAGATC+TGG | - | chr5.2:2747989-2748008 | None:intergenic | 45.0% | |
| CTTGTGCCAGTCATTAGATG+TGG | - | chr5.2:2745409-2745428 | None:intergenic | 45.0% | |
| GAAGGTTGTGATACGAGTGT+TGG | + | chr5.2:2743893-2743912 | MS.gene21680:CDS | 45.0% | |
| GCACATATACTCCTCGGATT+AGG | + | chr5.2:2744679-2744698 | MS.gene21680:intron | 45.0% | |
| GCTCCGTGAAAATGATGCAT+AGG | + | chr5.2:2747683-2747702 | MS.gene21680:intron | 45.0% | |
| GCTGCAATAGTCATTGGTAC+TGG | + | chr5.2:2746498-2746517 | MS.gene21680:CDS | 45.0% | |
| GGTACAAACCTCAGTACGAA+CGG | - | chr5.2:2746973-2746992 | None:intergenic | 45.0% | |
| GGTTGGCATTTAACACGCTA+AGG | + | chr5.2:2744596-2744615 | MS.gene21680:intron | 45.0% | |
| GTAACGCGGGTTCATTTAAG+TGG | + | chr5.2:2745334-2745353 | MS.gene21680:CDS | 45.0% | |
| GTCATTAGATGTGGGGGAAT+AGG | - | chr5.2:2745400-2745419 | None:intergenic | 45.0% | |
| TACAGGAAGGACACCCATTT+AGG | - | chr5.2:2747925-2747944 | None:intergenic | 45.0% | |
| TCTAATGACTGGCACAAGCA+AGG | + | chr5.2:2745411-2745430 | MS.gene21680:CDS | 45.0% | |
| TCTACTTCATGCTCAAGGAC+GGG | - | chr5.2:2745370-2745389 | None:intergenic | 45.0% | |
| TCTCAGGATGTCACTAGAGT+CGG | + | chr5.2:2746912-2746931 | MS.gene21680:CDS | 45.0% | |
| TCTTACAACATCAGGACGCA+TGG | + | chr5.2:2746575-2746594 | MS.gene21680:CDS | 45.0% | |
| TGAACTGACACAGTGACACA+TGG | - | chr5.2:2744551-2744570 | None:intergenic | 45.0% | |
| TGGTACTAATGCCTGCTACT+TGG | + | chr5.2:2746518-2746537 | MS.gene21680:CDS | 45.0% | |
| TGTGCCAGTCATTAGATGTG+GGG | - | chr5.2:2745407-2745426 | None:intergenic | 45.0% | |
| TGTTGGAAGGTTAAGGCAAG+TGG | + | chr5.2:2743910-2743929 | MS.gene21680:CDS | 45.0% | |
| TTAGCAGCTGCTGGTATTGT+TGG | + | chr5.2:2748058-2748077 | MS.gene21680:CDS | 45.0% | |
| ! | AACTTTGGTGATTTGGGTGC+AGG | + | chr5.2:2746834-2746853 | MS.gene21680:intron | 45.0% |
| ! | AAGGCAAGCATTGCTTTCAG+AGG | - | chr5.2:2746014-2746033 | None:intergenic | 45.0% |
| ! | AAGGCAAGTGGTTGATGCTA+TGG | + | chr5.2:2743922-2743941 | MS.gene21680:CDS | 45.0% |
| ! | ACTTTGGTGATTTGGGTGCA+GGG | + | chr5.2:2746835-2746854 | MS.gene21680:intron | 45.0% |
| ! | AGGCAAGCATTGCTTTCAGA+GGG | - | chr5.2:2746013-2746032 | None:intergenic | 45.0% |
| ! | TGAAGAAGATTGGTCGTGAC+GGG | + | chr5.2:2748086-2748105 | MS.gene21680:CDS | 45.0% |
| ! | TGTTGTGAAGGTGTGTGATG+TGG | + | chr5.2:2748015-2748034 | MS.gene21680:CDS | 45.0% |
| !! | CAGGAAGCATTTGCACGAAA+TGG | + | chr5.2:2745900-2745919 | MS.gene21680:CDS | 45.0% |
| !! | CCTCGGGCATTTTAATCAAG+TGG | + | chr5.2:2745663-2745682 | MS.gene21680:CDS | 45.0% |
| !! | GCTTTCTGGAGTACCATGTT+AGG | + | chr5.2:2744290-2744309 | MS.gene21680:intron | 45.0% |
| !! | GTTGTGATACGAGTGTTGGA+AGG | + | chr5.2:2743897-2743916 | MS.gene21680:CDS | 45.0% |
| !! | TACCTCAAAGGTGTCGTTGA+GGG | - | chr5.2:2747875-2747894 | None:intergenic | 45.0% |
| !! | TGTGTGTTTGGGTTGGTGTT+GGG | + | chr5.2:2744911-2744930 | MS.gene21680:intron | 45.0% |
| !! | TTACCTCAAAGGTGTCGTTG+AGG | - | chr5.2:2747876-2747895 | None:intergenic | 45.0% |
| !! | TTGTGTGTTTGGGTTGGTGT+TGG | + | chr5.2:2744910-2744929 | MS.gene21680:intron | 45.0% |
| !!! | GTTTGGATTGGTTTTGGGAG+AGG | + | chr5.2:2744525-2744544 | MS.gene21680:intron | 45.0% |
| !! | ATAAAAATTAGAAATTTAAA+CGG | - | chr5.2:2744242-2744261 | None:intergenic | 5.0% |
| !!! | TTTTATTTAAATTTTGTTTA+TGG | + | chr5.2:2744377-2744396 | MS.gene21680:intron | 5.0% |
| AACCCTCAACGACACCTTTG+AGG | + | chr5.2:2747870-2747889 | MS.gene21680:CDS | 50.0% | |
| AATCAAGAAGGTTCACCCGG+TGG | + | chr5.2:2745093-2745112 | MS.gene21680:intron | 50.0% | |
| ACATAGATGTGCCTGTTGGC+CGG | + | chr5.2:2744626-2744645 | MS.gene21680:intron | 50.0% | |
| ACCGAAGATGGATCAGGCAT+TGG | + | chr5.2:2748280-2748299 | MS.gene21680:CDS | 50.0% | |
| ACCGGGTGAACCTTCTTGAT+TGG | - | chr5.2:2745094-2745113 | None:intergenic | 50.0% | |
| ACGCACATAGATGTGCCTGT+TGG | + | chr5.2:2744622-2744641 | MS.gene21680:intron | 50.0% | |
| AGATGTGCATGTAGCTGCCT+TGG | + | chr5.2:2745926-2745945 | MS.gene21680:CDS | 50.0% | |
| AGGCAGCTACATGCACATCT+AGG | - | chr5.2:2745926-2745945 | None:intergenic | 50.0% | |
| ATGAAGCATGGACTCAGACG+CGG | - | chr5.2:2744825-2744844 | None:intergenic | 50.0% | |
| CACGACACGTATCCGACATA+AGG | - | chr5.2:2744710-2744729 | None:intergenic | 50.0% | |
| CCCAATGCCTGATCCATCTT+CGG | - | chr5.2:2748284-2748303 | None:intergenic | 50.0% | |
| CCGAAGATGGATCAGGCATT+GGG | + | chr5.2:2748281-2748300 | MS.gene21680:CDS | 50.0% | |
| CGTCTGAGTCCATGCTTCAT+AGG | + | chr5.2:2744825-2744844 | MS.gene21680:intron | 50.0% | |
| GCCAATCAAGAAGGTTCACC+CGG | + | chr5.2:2745090-2745109 | MS.gene21680:intron | 50.0% | |
| GGATGGGATTTAACGCGCTA+CGG | + | chr5.2:2744986-2745005 | MS.gene21680:intron | 50.0% | |
| GTCGCTCTACTTCATGCTCA+AGG | - | chr5.2:2745375-2745394 | None:intergenic | 50.0% | |
| GTGCCAGTCATTAGATGTGG+GGG | - | chr5.2:2745406-2745425 | None:intergenic | 50.0% | |
| GTGTGATGTGGTGACTCGTA+GGG | + | chr5.2:2748027-2748046 | MS.gene21680:CDS | 50.0% | |
| TCACAGGACAGAAGGGAACT+TGG | + | chr5.2:2745602-2745621 | MS.gene21680:CDS | 50.0% | |
| TCATGCATGGCAGCCATCAA+AGG | - | chr5.2:2747817-2747836 | None:intergenic | 50.0% | |
| TCGTGAGGAGAGTCATTCTC+AGG | + | chr5.2:2746896-2746915 | MS.gene21680:CDS | 50.0% | |
| TGCATGTAGCTGCCTTGGTA+AGG | + | chr5.2:2745931-2745950 | MS.gene21680:intron | 50.0% | |
| TGTATCTCGGTGACATCGTG+AGG | + | chr5.2:2746881-2746900 | MS.gene21680:CDS | 50.0% | |
| TGTGTGATGTGGTGACTCGT+AGG | + | chr5.2:2748026-2748045 | MS.gene21680:CDS | 50.0% | |
| TTTCAACGCCGTTCGTACTG+AGG | + | chr5.2:2746962-2746981 | MS.gene21680:CDS | 50.0% | |
| ! | CGAAGATGGATCAGGCATTG+GGG | + | chr5.2:2748282-2748301 | MS.gene21680:CDS | 50.0% |
| ! | GCAAGTGGTTGATGCTATGG+CGG | + | chr5.2:2743925-2743944 | MS.gene21680:CDS | 50.0% |
| ! | TTTGATGGCTGCCATGCATG+AGG | + | chr5.2:2747816-2747835 | MS.gene21680:CDS | 50.0% |
| !! | AAGAGTGGTAGTGGGAGTGA+CGG | + | chr5.2:2743763-2743782 | MS.gene21680:CDS | 50.0% |
| ACAATGCATGGCGCGTCTGT+TGG | - | chr5.2:2745018-2745037 | None:intergenic | 55.0% | |
| ACAGACGCGCCATGCATTGT+TGG | + | chr5.2:2745018-2745037 | MS.gene21680:intron | 55.0% | |
| TCATGCTCAAGGACGGGAGA+TGG | - | chr5.2:2745364-2745383 | None:intergenic | 55.0% | |
| TGTCGGATACGTGTCGTGTC+CGG | + | chr5.2:2744712-2744731 | MS.gene21680:intron | 55.0% | |
| ! | AAGATTGGTCGTGACGGGAG+TGG | + | chr5.2:2748091-2748110 | MS.gene21680:CDS | 55.0% |
| ! | AGTGGTTGATGCTATGGCGG+TGG | + | chr5.2:2743928-2743947 | MS.gene21680:CDS | 55.0% |
| ! | GCCGGTTTAGCTTCTGAAGG+TGG | + | chr5.2:2743959-2743978 | MS.gene21680:CDS | 55.0% |
| !! | CACGCCGGTTTAGCTTCTGA+AGG | + | chr5.2:2743956-2743975 | MS.gene21680:CDS | 55.0% |
| !! | TCGGTGTCATGTCGTGTTGC+CGG | - | chr5.2:2744734-2744753 | None:intergenic | 55.0% |
| CGCAAAGCAAACCGGCCAAC+AGG | - | chr5.2:2744640-2744659 | None:intergenic | 60.0% | |
| GCATCACAGGTGGACGGAGT+AGG | + | chr5.2:2748116-2748135 | MS.gene21680:CDS | 60.0% | |
| GCTGCTCGATTAGCAGCTGC+TGG | + | chr5.2:2748049-2748068 | MS.gene21680:CDS | 60.0% | |
| GTGGTGGCATCACAGGTGGA+CGG | + | chr5.2:2748110-2748129 | MS.gene21680:CDS | 60.0% | |
| ! | ATTGGTCGTGACGGGAGTGG+TGG | + | chr5.2:2748094-2748113 | MS.gene21680:CDS | 60.0% |
| ATGGCGGTGGAGATGCACGC+CGG | + | chr5.2:2743941-2743960 | MS.gene21680:CDS | 65.0% | |
| GACGGGAGTGGTGGCATCAC+AGG | + | chr5.2:2748103-2748122 | MS.gene21680:CDS | 65.0% | |
| GGGAGTGGTGGCATCACAGG+TGG | + | chr5.2:2748106-2748125 | MS.gene21680:CDS | 65.0% | |
| !! | GGTAGTGGGAGTGACGGCGA+CGG | + | chr5.2:2743769-2743788 | MS.gene21680:CDS | 65.0% |
| AGTGGGAGTGACGGCGACGG+TGG | + | chr5.2:2743772-2743791 | MS.gene21680:CDS | 70.0% | |
| GGGAGTGACGGCGACGGTGG+CGG | + | chr5.2:2743775-2743794 | MS.gene21680:CDS | 75.0% | |
| ! | AGTGACGGCGACGGTGGCGG+TGG | + | chr5.2:2743778-2743797 | MS.gene21680:CDS | 75.0% |
| !! | GACGGCGACGGTGGCGGTGG+CGG | + | chr5.2:2743781-2743800 | MS.gene21680:CDS | 80.0% |
| !! | GGTGGCGGCGTGTGCGGTGG+CGG | + | chr5.2:2743796-2743815 | MS.gene21680:CDS | 80.0% |
| !! | GGTGGCGGTGGCGGCGTGTG+CGG | + | chr5.2:2743790-2743809 | MS.gene21680:CDS | 80.0% |
| !! | GGCGGCGTGTGCGGTGGCGG+CGG | + | chr5.2:2743799-2743818 | MS.gene21680:CDS | 85.0% |
| !! | GGCGGTGGCGGCGTGTGCGG+TGG | + | chr5.2:2743793-2743812 | MS.gene21680:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 2743758 | 2748333 | 2743758 | ID=MS.gene21680 |
| chr5.2 | mRNA | 2743758 | 2748333 | 2743758 | ID=MS.gene21680.t1;Parent=MS.gene21680 |
| chr5.2 | exon | 2743758 | 2744029 | 2743758 | ID=MS.gene21680.t1.exon1;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2743758 | 2744029 | 2743758 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| chr5.2 | exon | 2745282 | 2745432 | 2745282 | ID=MS.gene21680.t1.exon2;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2745282 | 2745432 | 2745282 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| chr5.2 | exon | 2745536 | 2745712 | 2745536 | ID=MS.gene21680.t1.exon3;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2745536 | 2745712 | 2745536 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| chr5.2 | exon | 2745873 | 2745947 | 2745873 | ID=MS.gene21680.t1.exon4;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2745873 | 2745947 | 2745873 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| chr5.2 | exon | 2746441 | 2746596 | 2746441 | ID=MS.gene21680.t1.exon5;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2746441 | 2746596 | 2746441 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| chr5.2 | exon | 2746679 | 2746777 | 2746679 | ID=MS.gene21680.t1.exon6;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2746679 | 2746777 | 2746679 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| chr5.2 | exon | 2746856 | 2746983 | 2746856 | ID=MS.gene21680.t1.exon7;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2746856 | 2746983 | 2746856 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| chr5.2 | exon | 2747810 | 2747891 | 2747810 | ID=MS.gene21680.t1.exon8;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2747810 | 2747891 | 2747810 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| chr5.2 | exon | 2747983 | 2748333 | 2747983 | ID=MS.gene21680.t1.exon9;Parent=MS.gene21680.t1 |
| chr5.2 | CDS | 2747983 | 2748333 | 2747983 | ID=cds.MS.gene21680.t1;Parent=MS.gene21680.t1 |
| Gene Sequence |
| Protein sequence |
