AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22288


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22288.t1 MTR_5g009000 98.387 496 7 1 1 495 1 496 0.0 1001
MS.gene22288.t1 MTR_8g102460 56.751 474 192 5 26 495 26 490 0.0 536
MS.gene22288.t1 MTR_8g014530 55.110 499 210 5 1 495 1 489 0.0 517
MS.gene22288.t1 MTR_6g088795 52.350 468 210 3 32 495 30 488 8.28e-174 498
MS.gene22288.t1 MTR_1g025140 49.163 478 224 6 26 495 24 490 1.52e-150 439
MS.gene22288.t1 MTR_8g102460 58.912 331 132 3 26 352 26 356 8.87e-137 399
MS.gene22288.t1 MTR_8g102460 55.220 364 150 5 136 495 1 355 1.73e-134 393
MS.gene22288.t1 MTR_1g025140 50.696 359 168 4 26 376 24 381 2.42e-116 348
MS.gene22288.t1 MTR_4g097900 40.441 272 114 3 221 491 3 227 1.14e-54 183
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22288.t1 AT1G50460 72.034 472 128 3 25 493 25 495 0.0 701
MS.gene22288.t1 AT3G20040 67.339 496 155 3 1 493 1 492 0.0 637
MS.gene22288.t1 AT1G50460 71.040 404 113 3 93 493 17 419 0.0 590
MS.gene22288.t1 AT2G19860 55.511 499 209 3 1 495 1 490 0.0 537
MS.gene22288.t1 AT4G29130 55.311 499 210 3 1 495 1 490 0.0 536
MS.gene22288.t1 AT1G50460 73.333 330 86 1 25 352 25 354 1.17e-178 506
MS.gene22288.t1 AT1G47840 49.462 465 210 7 40 495 43 491 7.58e-145 424
MS.gene22288.t1 AT2G19860 52.699 389 171 3 111 495 2 381 6.40e-138 403
MS.gene22288.t1 AT1G47840 51.572 318 147 4 40 352 43 358 4.83e-103 313
MS.gene22288.t1 AT4G37840 38.994 477 269 6 22 492 22 482 1.19e-99 308
MS.gene22288.t1 AT1G47845 46.528 144 73 3 276 417 40 181 6.83e-35 129

Find 125 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGAAGCATTTGCACAAAA+TGG 0.231688 5.3:+3076939 MS.gene22288:CDS
TGAAGCTTTAAACGAAATAT+TGG 0.248960 5.3:+3079298 MS.gene22288:CDS
CTAACCTGATCATTTGGATT+AGG 0.252444 5.3:-3077799 None:intergenic
CATATTATGCGCTGCATCTT+GGG 0.273264 5.3:+3076338 MS.gene22288:CDS
GAAGCTTTAAACGAAATATT+GGG 0.286275 5.3:+3079299 MS.gene22288:CDS
TAACCTGATCATTTGGATTA+GGG 0.298457 5.3:-3077798 None:intergenic
TCAATGTCATACTGTGTTCT+TGG 0.301091 5.3:-3077760 None:intergenic
TCATTTCAGGACTCCTTTGA+TGG 0.304467 5.3:+3078877 MS.gene22288:intron
CTTGCCTTCAATGGAAGATC+TGG 0.322162 5.3:-3079062 None:intergenic
GAAACAGACATTTGTTTCAT+AGG 0.324581 5.3:-3076680 None:intergenic
CCATATTATGCGCTGCATCT+TGG 0.333001 5.3:+3076337 MS.gene22288:CDS
CCAAGATGCAGCGCATAATA+TGG 0.343745 5.3:-3076337 None:intergenic
GGTGGCGGCGTGTGCGGTGG+CGG 0.359887 5.3:+3074880 MS.gene22288:CDS
AGATGTTGCAGCATGTTTGC+AGG 0.362698 5.3:+3076920 MS.gene22288:CDS
CCTTCTGTCCTGTGAAGTAT+TGG 0.373474 5.3:-3076633 None:intergenic
CAGAACCTAACCTGATCATT+TGG 0.382556 5.3:-3077805 None:intergenic
GATTCCAGATCTTCCATTGA+AGG 0.383594 5.3:+3079058 MS.gene22288:intron
GTTGGCATCTTGAAGAAGAT+TGG 0.393117 5.3:+3079152 MS.gene22288:CDS
GTTGAAAGCTTCGAAGAAAT+AGG 0.397856 5.3:-3077985 None:intergenic
CCGAAGATGGATCAGGCATT+GGG 0.399324 5.3:+3079357 MS.gene22288:CDS
AAAGAATTCATTGCTAAAGA+TGG 0.402632 5.3:+3076608 MS.gene22288:CDS
ACTATTGCAGCAACAGTGTC+TGG 0.403276 5.3:-3077525 None:intergenic
TTAGCAGCTGCTGGTATTGT+TGG 0.409433 5.3:+3079134 MS.gene22288:CDS
ATTCTTAATGTCACCGAAGA+TGG 0.411432 5.3:+3079344 MS.gene22288:CDS
TGATGCTATTATCAAGTGTC+AGG 0.416448 5.3:+3077587 MS.gene22288:CDS
TTAGGTTGTCAATATGGAAT+GGG 0.425444 5.3:+3077714 MS.gene22288:intron
GACGGCGACGGTGGCGGTGG+CGG 0.428913 5.3:+3074865 MS.gene22288:CDS
TCACTAGAGTCGGATATGTT+TGG 0.429372 5.3:+3077961 MS.gene22288:CDS
GGGAGTGACGGCGACGGTGG+CGG 0.445488 5.3:+3074859 MS.gene22288:CDS
GACGGGAGTGGTGGCATCAC+AGG 0.450160 5.3:+3079179 MS.gene22288:CDS
GAAACAAATGTCTGTTTCCT+CGG 0.450286 5.3:+3076685 MS.gene22288:CDS
GAGTGAAGAGTAGAAGAAAG+TGG 0.451502 5.3:+3074921 MS.gene22288:CDS
GAAGATGGGAAGAGTGGTAG+TGG 0.452894 5.3:+3074838 None:intergenic
CTTGCTACTTCTATCAAGTC+AGG 0.456183 5.3:-3078923 None:intergenic
ACCACCTTCAGAAGCTAAAC+CGG 0.457674 5.3:-3075044 None:intergenic
AATCCTCAACGACACCTTTG+AGG 0.459020 5.3:+3078946 MS.gene22288:CDS
TTTAGGTTGTCAATATGGAA+TGG 0.460418 5.3:+3077713 MS.gene22288:intron
TCACAGGACAGAAGGGAACT+TGG 0.465295 5.3:+3076641 MS.gene22288:CDS
GGTGGCGGTGGCGGCGTGTG+CGG 0.466342 5.3:+3074874 MS.gene22288:CDS
AGTGACGGCGACGGTGGCGG+TGG 0.467501 5.3:+3074862 MS.gene22288:CDS
CCCAATGCCTGATCCATCTT+CGG 0.469673 5.3:-3079357 None:intergenic
AAACAGACATTTGTTTCATA+GGG 0.475582 5.3:-3076679 None:intergenic
GGCGGTGGCGGCGTGTGCGG+TGG 0.477522 5.3:+3074877 MS.gene22288:CDS
ACCGAAGATGGATCAGGCAT+TGG 0.478914 5.3:+3079356 MS.gene22288:CDS
ATACGAGTGTTGGAAGGTTA+AGG 0.481037 5.3:+3074987 MS.gene22288:CDS
CTGTTGGAACATTAGCTGTT+GGG 0.486153 5.3:+3077490 MS.gene22288:CDS
ATCAATTCGCTCCAAGTAGC+AGG 0.487352 5.3:-3077568 None:intergenic
TGGTACTAATGCCTGCTACT+TGG 0.489030 5.3:+3077557 MS.gene22288:CDS
AAGCAGGTTAATGATACTGT+TGG 0.489212 5.3:+3077474 MS.gene22288:intron
AGGCAGCTACATGCACATCT+AGG 0.489720 5.3:-3076962 None:intergenic
AAGCCCTAATCCAAATGATC+AGG 0.491358 5.3:+3077795 MS.gene22288:CDS
CAGGGTCTTCTTACAACATC+AGG 0.499400 5.3:+3077606 MS.gene22288:CDS
TGAAGAAGATTGGTCGTGAC+GGG 0.506742 5.3:+3079162 MS.gene22288:CDS
AGAACAGTTGTGGCAATTGA+AGG 0.507809 5.3:+3079233 MS.gene22288:CDS
CTTGTGCTAGTCATTAGATG+TGG 0.509151 5.3:-3076448 None:intergenic
AATGTCACCGAAGATGGATC+AGG 0.512205 5.3:+3079350 MS.gene22288:CDS
ACTGTTGCTGCAATAGTCAT+TGG 0.514702 5.3:+3077531 MS.gene22288:CDS
GTAACGCGGGTTCATTTAAG+TGG 0.515646 5.3:+3076376 MS.gene22288:CDS
TCGTGAGGAGAGTCATTCTC+AGG 0.519035 5.3:+3077935 MS.gene22288:CDS
GCTGCTCGATTAGCAGCTGC+TGG 0.519064 5.3:+3079125 MS.gene22288:CDS
ATATTATGCGCTGCATCTTG+GGG 0.519770 5.3:+3076339 MS.gene22288:CDS
AAACAAATGTCTGTTTCCTC+GGG 0.521874 5.3:+3076686 MS.gene22288:CDS
AAGGCAAGTGGTTGATGCTA+TGG 0.522670 5.3:+3075006 MS.gene22288:CDS
AGATGTGCATGTAGCTGCCT+TGG 0.522932 5.3:+3076965 MS.gene22288:CDS
ATGTTGATAATCTTCCTAAC+GGG 0.524290 5.3:+3075092 MS.gene22288:CDS
AGACATTTGTTTCATAGGGA+AGG 0.529304 5.3:-3076675 None:intergenic
GTCTGACTTATTTACCTCAA+AGG 0.532138 5.3:-3078960 None:intergenic
CTCTACTTCATGCTCAAGGA+CGG 0.537992 5.3:-3076410 None:intergenic
CCAATACTTCACAGGACAGA+AGG 0.538946 5.3:+3076633 MS.gene22288:CDS
AGTGGGAGTGACGGCGACGG+TGG 0.547039 5.3:+3074856 MS.gene22288:CDS
GCCGGTTTAGCTTCTGAAGG+TGG 0.550536 5.3:+3075043 MS.gene22288:CDS
TTTCAACGCCGTTCGTACTG+AGG 0.551274 5.3:+3078001 MS.gene22288:CDS
TATGTTGATAATCTTCCTAA+CGG 0.553392 5.3:+3075091 MS.gene22288:CDS
AAGCTTTAAACGAAATATTG+GGG 0.554190 5.3:+3079300 MS.gene22288:CDS
AAGATTGGTCGTGACGGGAG+TGG 0.556777 5.3:+3079167 MS.gene22288:CDS
GCATCACAGGTGGACGGAGT+AGG 0.560009 5.3:+3079192 MS.gene22288:CDS
AGATGGTTCCAATACTTCAC+AGG 0.562226 5.3:+3076625 MS.gene22288:CDS
TTGTGCTAGTCATTAGATGT+GGG 0.569101 5.3:-3076447 None:intergenic
TCTACTTCATGCTCAAGGAC+GGG 0.569738 5.3:-3076409 None:intergenic
TTTGATGGCTGCCATGCATG+AGG 0.574951 5.3:+3078892 MS.gene22288:CDS
GTGTTGAAAGAGTTTGAAGA+AGG 0.576656 5.3:+3074959 MS.gene22288:CDS
TCTCAGGATGTCACTAGAGT+CGG 0.577140 5.3:+3077951 MS.gene22288:CDS
GTCGCTCTACTTCATGCTCA+AGG 0.578601 5.3:-3076414 None:intergenic
TAGGTTGTCAATATGGAATG+GGG 0.578992 5.3:+3077715 MS.gene22288:intron
ATGATATCAGGAATGTATCT+CGG 0.579708 5.3:+3077907 MS.gene22288:CDS
TCATGCATGGCAGCCATCAA+AGG 0.579757 5.3:-3078890 None:intergenic
TCATGCTCAAGGACGGGAGA+TGG 0.579799 5.3:-3076403 None:intergenic
GCTGCAATAGTCATTGGTAC+TGG 0.581228 5.3:+3077537 MS.gene22288:CDS
TGTTGGAAGGTTAAGGCAAG+TGG 0.583503 5.3:+3074994 MS.gene22288:CDS
AAGATGGGAAGAGTGGTAGT+GGG 0.588287 5.3:+3074839 None:intergenic
GTGGTGGCATCACAGGTGGA+CGG 0.589673 5.3:+3079186 MS.gene22288:CDS
CACGCCGGTTTAGCTTCTGA+AGG 0.591635 5.3:+3075040 MS.gene22288:CDS
TTGAAGAAGATTGGTCGTGA+CGG 0.592268 5.3:+3079161 MS.gene22288:CDS
GTGACTAACCATATCTACAA+TGG 0.594940 5.3:-3076738 None:intergenic
GTTAGGAAGATTATCAACAT+AGG 0.595626 5.3:-3075089 None:intergenic
AGTGGTTGATGCTATGGCGG+TGG 0.596296 5.3:+3075012 MS.gene22288:CDS
ATTGGTCGTGACGGGAGTGG+TGG 0.597920 5.3:+3079170 MS.gene22288:CDS
GAAGGTTGTGATACGAGTGT+TGG 0.604021 5.3:+3074977 MS.gene22288:CDS
GTTGTGATACGAGTGTTGGA+AGG 0.610760 5.3:+3074981 MS.gene22288:CDS
GGGAGTGGTGGCATCACAGG+TGG 0.611199 5.3:+3079182 MS.gene22288:CDS
ACAGTTGTGGCAATTGAAGG+AGG 0.611717 5.3:+3079236 MS.gene22288:CDS
ACTGTTGGAACATTAGCTGT+TGG 0.612811 5.3:+3077489 MS.gene22288:CDS
GTGCTAGTCATTAGATGTGG+GGG 0.613432 5.3:-3076445 None:intergenic
AGGTTGTCAATATGGAATGG+GGG 0.613620 5.3:+3077716 MS.gene22288:intron
AGGTGAATCATCCTCATGCA+TGG 0.614958 5.3:-3078903 None:intergenic
TGTATCTCGGTGACATCGTG+AGG 0.623745 5.3:+3077920 MS.gene22288:CDS
ATCGGTGAAGATGGGAAGAG+TGG 0.624776 5.3:+3074832 None:intergenic
AAGAGTGGTAGTGGGAGTGA+CGG 0.625333 5.3:+3074847 MS.gene22288:CDS
TCTAATGACTAGCACAAGCA+AGG 0.627317 5.3:+3076453 MS.gene22288:CDS
CGAAGATGGATCAGGCATTG+GGG 0.630238 5.3:+3079358 MS.gene22288:CDS
TCTTACAACATCAGGACGCA+TGG 0.630747 5.3:+3077614 MS.gene22288:CDS
CAATACTTCACAGGACAGAA+GGG 0.631867 5.3:+3076634 MS.gene22288:CDS
GATGCTATTATCAAGTGTCA+GGG 0.635033 5.3:+3077588 MS.gene22288:CDS
GTGTGATGTGGTGACTCGAA+GGG 0.640591 5.3:+3079103 MS.gene22288:CDS
TTACCTCAAAGGTGTCGTTG+AGG 0.644762 5.3:-3078949 None:intergenic
ATGGCGGTGGAGATGCACGC+CGG 0.645387 5.3:+3075025 MS.gene22288:CDS
CCACTTGATTAAAATGCCCG+AGG 0.646430 5.3:-3076702 None:intergenic
TGTTGTGAAGGTGTGTGATG+TGG 0.646930 5.3:+3079091 MS.gene22288:CDS
GGTAGTGGGAGTGACGGCGA+CGG 0.652117 5.3:+3074853 MS.gene22288:CDS
TGTGTGATGTGGTGACTCGA+AGG 0.656555 5.3:+3079102 MS.gene22288:CDS
TATTATGCGCTGCATCTTGG+GGG 0.666308 5.3:+3076340 MS.gene22288:CDS
GGTACAAACCTCAGTACGAA+CGG 0.676112 5.3:-3078009 None:intergenic
AGCTTTAAACGAAATATTGG+GGG 0.680619 5.3:+3079301 MS.gene22288:CDS
TGTGCTAGTCATTAGATGTG+GGG 0.691314 5.3:-3076446 None:intergenic
GCAAGTGGTTGATGCTATGG+CGG 0.693157 5.3:+3075009 MS.gene22288:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAGATATCTTAATT+TGG + chr5.3:3077366-3077385 MS.gene22288:intron 10.0%
!! AGTAATATAATGAAACAAAT+AGG - chr5.3:3077428-3077447 None:intergenic 15.0%
!! TAAATGATAATAGTTGTAAA+TGG + chr5.3:3077279-3077298 MS.gene22288:intron 15.0%
!! TTAATTCTATAATAGTGAAA+TGG + chr5.3:3077252-3077271 MS.gene22288:intron 15.0%
!! TTCAATGTCTAAAAAAATTA+AGG - chr5.3:3078324-3078343 None:intergenic 15.0%
!!! AAAAGTTTTTGTATAAAAGA+AGG - chr5.3:3077234-3077253 None:intergenic 15.0%
!!! AGTTCTTATTTTTCATTTTT+GGG + chr5.3:3077656-3077675 MS.gene22288:intron 15.0%
!!! GTTTTTTGATTTATTATGTT+TGG + chr5.3:3075235-3075254 MS.gene22288:intron 15.0%
!!! TCTTAATTGATCTTTAAAAT+TGG + chr5.3:3076768-3076787 MS.gene22288:intron 15.0%
!! AAAACCATATATCTTGTATT+TGG + chr5.3:3079027-3079046 MS.gene22288:intron 20.0%
!! AAACAAACCAATTTAACAAA+AGG - chr5.3:3076290-3076309 None:intergenic 20.0%
!! ACTATTAACTTAGTTAATGA+AGG - chr5.3:3078368-3078387 None:intergenic 20.0%
!! ATGTCTAAAAAAATTAAGGT+AGG - chr5.3:3078320-3078339 None:intergenic 20.0%
!! CTATTAACTTAGTTAATGAA+GGG - chr5.3:3078367-3078386 None:intergenic 20.0%
!! GAAAAACAAATCATACAATT+AGG - chr5.3:3077011-3077030 None:intergenic 20.0%
!! GATGTGTATATATATTTATC+TGG + chr5.3:3078280-3078299 MS.gene22288:intron 20.0%
!! TATATATTTATCTGGTGATT+TGG + chr5.3:3078288-3078307 MS.gene22288:intron 20.0%
!! TGTTCTGTTATTCAATAAAA+AGG + chr5.3:3078100-3078119 MS.gene22288:intron 20.0%
!! TTTAACGTTATTACATGAAA+AGG - chr5.3:3076539-3076558 None:intergenic 20.0%
!!! ATGTTTTTGATCTAAATGTA+AGG + chr5.3:3077166-3077185 MS.gene22288:intron 20.0%
!!! ATTTGTTATGACTAAAACTT+TGG + chr5.3:3077858-3077877 MS.gene22288:intron 20.0%
!!! CAGTTCTTATTTTTCATTTT+TGG + chr5.3:3077655-3077674 MS.gene22288:intron 20.0%
!!! GTCATTTTCTCAAATTTTAT+CGG + chr5.3:3075819-3075838 MS.gene22288:intron 20.0%
!!! TATATGGTTTTTAGATTTAC+AGG - chr5.3:3079018-3079037 None:intergenic 20.0%
!!! TTTTTGATTTCATTTTAAGC+AGG + chr5.3:3077458-3077477 MS.gene22288:intron 20.0%
! AAAAATGAAAAGAACAGTTG+TGG + chr5.3:3079223-3079242 MS.gene22288:CDS 25.0%
! AAACAGACATTTGTTTCATA+GGG - chr5.3:3076682-3076701 None:intergenic 25.0%
! AAAGAATTCATTGCTAAAGA+TGG + chr5.3:3076608-3076627 MS.gene22288:CDS 25.0%
! AACAAAAACATAGACAAAAC+TGG - chr5.3:3075295-3075314 None:intergenic 25.0%
! ACAAAAACATAGACAAAACT+GGG - chr5.3:3075294-3075313 None:intergenic 25.0%
! AGAAAAAAACAATCTGTTGA+AGG - chr5.3:3077135-3077154 None:intergenic 25.0%
! GGATTTGGACATTTAATAAA+TGG + chr5.3:3075495-3075514 MS.gene22288:intron 25.0%
! TATGTATTATACCTTAATCC+CGG - chr5.3:3077088-3077107 None:intergenic 25.0%
! TATTCAATAAAAAGGCAATC+TGG + chr5.3:3078108-3078127 MS.gene22288:intron 25.0%
! TGTTTATGGAAAATGTACTT+TGG + chr5.3:3075474-3075493 MS.gene22288:intron 25.0%
! TTCAATGTAATCATATGTGT+CGG - chr5.3:3075795-3075814 None:intergenic 25.0%
!! AATTGACTTTGCTATAAACT+TGG + chr5.3:3078556-3078575 MS.gene22288:intron 25.0%
!! ATTTTTCTTTTAGCACACAA+GGG + chr5.3:3078511-3078530 MS.gene22288:intron 25.0%
!! CAAAGAAAACCAAAGTTTTA+GGG - chr5.3:3076493-3076512 None:intergenic 25.0%
!! TATTTTTCTTTTAGCACACA+AGG + chr5.3:3078510-3078529 MS.gene22288:intron 25.0%
!! TTCTCAAATTTTATCGGTAT+GGG + chr5.3:3075825-3075844 MS.gene22288:intron 25.0%
!! TTTCTCAAATTTTATCGGTA+TGG + chr5.3:3075824-3075843 MS.gene22288:intron 25.0%
!! TTTTAATCAAGTGGACAAAA+GGG + chr5.3:3076711-3076730 MS.gene22288:CDS 25.0%
!!! AAGCTTTAAACGAAATATTG+GGG + chr5.3:3079300-3079319 MS.gene22288:CDS 25.0%
!!! ATTTTAATCAAGTGGACAAA+AGG + chr5.3:3076710-3076729 MS.gene22288:CDS 25.0%
!!! CAACAGATTGTTTTTTTCTA+GGG + chr5.3:3077136-3077155 MS.gene22288:intron 25.0%
!!! CATATTTTTTGTCCCTAAAT+GGG + chr5.3:3078985-3079004 MS.gene22288:intron 25.0%
!!! GAAGCTTTAAACGAAATATT+GGG + chr5.3:3079299-3079318 MS.gene22288:CDS 25.0%
!!! GAATTTATTTTCCGTCTTTT+AGG + chr5.3:3077696-3077715 MS.gene22288:intron 25.0%
!!! TATGTTGATAATCTTCCTAA+CGG + chr5.3:3075091-3075110 MS.gene22288:CDS 25.0%
!!! TCAACAGATTGTTTTTTTCT+AGG + chr5.3:3077135-3077154 MS.gene22288:intron 25.0%
!!! TGAAGCTTTAAACGAAATAT+TGG + chr5.3:3079298-3079317 MS.gene22288:CDS 25.0%
!!! TTACATGCTTTTTGAAATGT+TGG + chr5.3:3078624-3078643 MS.gene22288:intron 25.0%
!!! TTTTTTATCAGTACTGAGAA+AGG + chr5.3:3076313-3076332 MS.gene22288:intron 25.0%
AAAAAAAGTGATTACCCGTT+AGG - chr5.3:3075109-3075128 None:intergenic 30.0%
AAAAAACAATCTGTTGAAGG+CGG - chr5.3:3077132-3077151 None:intergenic 30.0%
AAAACCAGAACAATTGAGTA+TGG - chr5.3:3078821-3078840 None:intergenic 30.0%
ACAGCCAAATACAAGATATA+TGG - chr5.3:3079034-3079053 None:intergenic 30.0%
ACCAAATCTTGCTAAAGATA+AGG - chr5.3:3076204-3076223 None:intergenic 30.0%
ACCAATTTAACAAAAGGACT+CGG - chr5.3:3076284-3076303 None:intergenic 30.0%
AGTCTATGACAGCTATTTAT+TGG + chr5.3:3076006-3076025 MS.gene22288:intron 30.0%
ATCAAAACAAGAAAAGCCAA+AGG - chr5.3:3078600-3078619 None:intergenic 30.0%
ATCAAGCAACAAAAGTCATT+AGG - chr5.3:3077833-3077852 None:intergenic 30.0%
ATCTTGGTTATACAAAGCAT+TGG + chr5.3:3078200-3078219 MS.gene22288:intron 30.0%
ATGATATCAGGAATGTATCT+CGG + chr5.3:3077907-3077926 MS.gene22288:CDS 30.0%
ATTGAATAACAGAACACATC+TGG - chr5.3:3078096-3078115 None:intergenic 30.0%
CAAATCATACAATTAGGCTA+AGG - chr5.3:3077005-3077024 None:intergenic 30.0%
CATATTGACAACCTAAAAGA+CGG - chr5.3:3077710-3077729 None:intergenic 30.0%
CCATTTAGGGACAAAAAATA+TGG - chr5.3:3078987-3079006 None:intergenic 30.0%
GAAACAGACATTTGTTTCAT+AGG - chr5.3:3076683-3076702 None:intergenic 30.0%
GCTGATAAGATATATTTCCT+TGG + chr5.3:3078781-3078800 MS.gene22288:intron 30.0%
GGAAAACATACTTGATACTA+TGG + chr5.3:3078070-3078089 MS.gene22288:intron 30.0%
GTCTATGACAGCTATTTATT+GGG + chr5.3:3076007-3076026 MS.gene22288:intron 30.0%
GTGTACATAGAATAGAATAC+AGG - chr5.3:3078676-3078695 None:intergenic 30.0%
GTTAGGAAGATTATCAACAT+AGG - chr5.3:3075092-3075111 None:intergenic 30.0%
TAACCTGATCATTTGGATTA+GGG - chr5.3:3077801-3077820 None:intergenic 30.0%
TATGTATGACCAATGTCTTT+AGG + chr5.3:3078049-3078068 MS.gene22288:intron 30.0%
TATGTTTCATGCACTACAAT+TGG - chr5.3:3078419-3078438 None:intergenic 30.0%
TCCTTATCTTTAGCAAGATT+TGG + chr5.3:3076200-3076219 MS.gene22288:intron 30.0%
TGATCAAAACCCTAAAACTT+TGG + chr5.3:3076481-3076500 MS.gene22288:intron 30.0%
TGATTGATAGATTGTGTGTT+TGG + chr5.3:3075941-3075960 MS.gene22288:intron 30.0%
TGGAAAATGTACTTTGGATT+TGG + chr5.3:3075480-3075499 MS.gene22288:intron 30.0%
TTGATAGATTGTGTTTGGAT+TGG + chr5.3:3075596-3075615 MS.gene22288:intron 30.0%
! AAATTGAATTTTATGCTCGC+AGG + chr5.3:3076556-3076575 MS.gene22288:intron 30.0%
! ACAATTTTTCTTGCCTTCAA+TGG - chr5.3:3079074-3079093 None:intergenic 30.0%
! ACCTATTGTTGTTCTATTGT+AGG + chr5.3:3078170-3078189 MS.gene22288:intron 30.0%
! GACTAAAACTTTGGTGATTT+GGG + chr5.3:3077867-3077886 MS.gene22288:intron 30.0%
! GCAAAGAAAACCAAAGTTTT+AGG - chr5.3:3076494-3076513 None:intergenic 30.0%
! GCTTGTTTGGTAACTATTTA+TGG - chr5.3:3076812-3076831 None:intergenic 30.0%
! GTATGTTTTCCTAAAGACAT+TGG - chr5.3:3078061-3078080 None:intergenic 30.0%
! TAATTTGCAAGCTGTAAGAA+TGG + chr5.3:3075573-3075592 MS.gene22288:intron 30.0%
! TGACTAAAACTTTGGTGATT+TGG + chr5.3:3077866-3077885 MS.gene22288:intron 30.0%
! TTAGGTTGTCAATATGGAAT+GGG + chr5.3:3077714-3077733 MS.gene22288:intron 30.0%
! TTTTTCTTTTAGCACACAAG+GGG + chr5.3:3078512-3078531 MS.gene22288:intron 30.0%
!! AATGGTTGATAGATTGTGTT+TGG + chr5.3:3075591-3075610 MS.gene22288:intron 30.0%
!! AATTTGGTGTGAAGGAAAAT+GGG + chr5.3:3077382-3077401 MS.gene22288:intron 30.0%
!! AGCTTTAAACGAAATATTGG+GGG + chr5.3:3079301-3079320 MS.gene22288:CDS 30.0%
!! ATGTTGATAATCTTCCTAAC+GGG + chr5.3:3075092-3075111 MS.gene22288:CDS 30.0%
!! GATATCTTAATTTGGTGTGA+AGG + chr5.3:3077374-3077393 MS.gene22288:intron 30.0%
!! GTTATACAAAGCATTGGAAA+AGG + chr5.3:3078206-3078225 MS.gene22288:intron 30.0%
!! TAATTTGGTGTGAAGGAAAA+TGG + chr5.3:3077381-3077400 MS.gene22288:intron 30.0%
!! TATTGTAGGCAGTTTTATCT+TGG + chr5.3:3078184-3078203 MS.gene22288:intron 30.0%
!! TGGTTTTTAGATTTACAGGA+AGG - chr5.3:3079014-3079033 None:intergenic 30.0%
!! TTTAGGTTGTCAATATGGAA+TGG + chr5.3:3077713-3077732 MS.gene22288:intron 30.0%
!!! ATTGTGTTTGGATTGGTTTT+GGG + chr5.3:3075603-3075622 MS.gene22288:intron 30.0%
!!! CCATATTTTTTGTCCCTAAA+TGG + chr5.3:3078984-3079003 MS.gene22288:intron 30.0%
!!! GGTTTTGAGAAAATGATATC+AGG + chr5.3:3077895-3077914 MS.gene22288:CDS 30.0%
AAACAAATGTCTGTTTCCTC+GGG + chr5.3:3076686-3076705 MS.gene22288:CDS 35.0%
AAACATAGACAAAACTGGGA+AGG - chr5.3:3075290-3075309 None:intergenic 35.0%
AAACCAAGTGCAACTTGAAT+AGG - chr5.3:3076843-3076862 None:intergenic 35.0%
AACCTGACAACAAATAGCTT+TGG - chr5.3:3076895-3076914 None:intergenic 35.0%
AAGCAGGTTAATGATACTGT+TGG + chr5.3:3077474-3077493 MS.gene22288:intron 35.0%
AAGCATCTCTTATGTGTCTA+GGG + chr5.3:3078138-3078157 MS.gene22288:intron 35.0%
ACCTGACAACAAATAGCTTT+GGG - chr5.3:3076894-3076913 None:intergenic 35.0%
AGACATTTGTTTCATAGGGA+AGG - chr5.3:3076678-3076697 None:intergenic 35.0%
AGTAGCATATACAAATCCAC+CGG - chr5.3:3076154-3076173 None:intergenic 35.0%
ATAGGACATACATGCTTGTT+TGG - chr5.3:3076825-3076844 None:intergenic 35.0%
ATGACAGCTATTTATTGGGA+TGG + chr5.3:3076011-3076030 MS.gene22288:intron 35.0%
ATTCTTAATGTCACCGAAGA+TGG + chr5.3:3079344-3079363 MS.gene22288:CDS 35.0%
CATACAATTAGGCTAAGGAA+AGG - chr5.3:3077000-3077019 None:intergenic 35.0%
CATAGTGTATGACTGAGAAT+CGG - chr5.3:3078033-3078052 None:intergenic 35.0%
CTAACCTGATCATTTGGATT+AGG - chr5.3:3077802-3077821 None:intergenic 35.0%
CTAATCCAAATGATCAGGTT+AGG + chr5.3:3077800-3077819 MS.gene22288:intron 35.0%
CTTTCTTTCATATCCTCTTG+TGG + chr5.3:3078461-3078480 MS.gene22288:intron 35.0%
GAAACAAATGTCTGTTTCCT+CGG + chr5.3:3076685-3076704 MS.gene22288:CDS 35.0%
GATAGATTGTGTGTTTGGAT+TGG + chr5.3:3075946-3075965 MS.gene22288:intron 35.0%
GATGCTATTATCAAGTGTCA+GGG + chr5.3:3077588-3077607 MS.gene22288:CDS 35.0%
GCAATGAAAAACACCTAACA+TGG - chr5.3:3075389-3075408 None:intergenic 35.0%
GCCTACAATAGAACAACAAT+AGG - chr5.3:3078174-3078193 None:intergenic 35.0%
GGCAAGAAAAATTGTTGTGA+AGG + chr5.3:3079079-3079098 MS.gene22288:CDS 35.0%
GTCTGACTTATTTACCTCAA+AGG - chr5.3:3078963-3078982 None:intergenic 35.0%
GTGACTAACCATATCTACAA+TGG - chr5.3:3076741-3076760 None:intergenic 35.0%
GTGTTGAAAGAGTTTGAAGA+AGG + chr5.3:3074959-3074978 MS.gene22288:CDS 35.0%
GTTGAAAGCTTCGAAGAAAT+AGG - chr5.3:3077988-3078007 None:intergenic 35.0%
GTTGTCTATTTCATGCTTTC+TGG + chr5.3:3075359-3075378 MS.gene22288:intron 35.0%
TAGGTTGTCAATATGGAATG+GGG + chr5.3:3077715-3077734 MS.gene22288:intron 35.0%
TCAATGTCATACTGTGTTCT+TGG - chr5.3:3077763-3077782 None:intergenic 35.0%
TGACAGCTATTTATTGGGAT+GGG + chr5.3:3076012-3076031 MS.gene22288:intron 35.0%
TGATGCTATTATCAAGTGTC+AGG + chr5.3:3077587-3077606 MS.gene22288:CDS 35.0%
TGGAACATTGTAGTTATCCA+AGG - chr5.3:3078801-3078820 None:intergenic 35.0%
TGTTCCATACTCAATTGTTC+TGG + chr5.3:3078814-3078833 MS.gene22288:intron 35.0%
TTACATATGACAACTGCCTT+TGG + chr5.3:3078581-3078600 MS.gene22288:intron 35.0%
TTGCCTTATACTTACACAAC+CGG + chr5.3:3077066-3077085 MS.gene22288:intron 35.0%
TTGCTTTCAGAGGGAAATAT+TGG - chr5.3:3077043-3077062 None:intergenic 35.0%
TTGTAGTGCATGAAACATAG+TGG + chr5.3:3078420-3078439 MS.gene22288:intron 35.0%
TTGTGCTAGTCATTAGATGT+GGG - chr5.3:3076450-3076469 None:intergenic 35.0%
! AAAGCATCTCTTATGTGTCT+AGG + chr5.3:3078137-3078156 MS.gene22288:intron 35.0%
! ACCGAGTCCTTTTGTTAAAT+TGG + chr5.3:3076280-3076299 MS.gene22288:intron 35.0%
! AGGGTTTTCCATTGTAGATA+TGG + chr5.3:3076730-3076749 MS.gene22288:CDS 35.0%
! AGGTGATTCATGATTTGTGT+CGG + chr5.3:3075887-3075906 MS.gene22288:intron 35.0%
! ATCTTGGGGGAACAAATTTT+AGG + chr5.3:3076353-3076372 MS.gene22288:CDS 35.0%
! TCTGAAACTCTTGTCATTTC+AGG + chr5.3:3078864-3078883 MS.gene22288:intron 35.0%
! TCTTGGGGGAACAAATTTTA+GGG + chr5.3:3076354-3076373 MS.gene22288:CDS 35.0%
!! AAAGCTATTTGTTGTCAGGT+TGG + chr5.3:3076894-3076913 MS.gene22288:intron 35.0%
!! GTTCAACAGTGTCATTTCAA+CGG + chr5.3:3075257-3075276 MS.gene22288:intron 35.0%
!!! AACAAATTTTAGGGTAACGC+GGG + chr5.3:3076363-3076382 MS.gene22288:CDS 35.0%
!!! ATGCACAGTTTGTTTTTTCC+TGG + chr5.3:3078717-3078736 MS.gene22288:intron 35.0%
!!! CGTCTTTTAGGTTGTCAATA+TGG + chr5.3:3077708-3077727 MS.gene22288:intron 35.0%
!!! GAACAAATTTTAGGGTAACG+CGG + chr5.3:3076362-3076381 MS.gene22288:CDS 35.0%
!!! GATTGTGTTTGGATTGGTTT+TGG + chr5.3:3075602-3075621 MS.gene22288:intron 35.0%
!!! GTTTTTTCCTGGAGTATTTG+AGG + chr5.3:3078728-3078747 MS.gene22288:intron 35.0%
AAGCCCTAATCCAAATGATC+AGG + chr5.3:3077795-3077814 MS.gene22288:CDS 40.0%
AATGCCAACCAGTAAATAGC+TGG - chr5.3:3075669-3075688 None:intergenic 40.0%
ACTAGATCTGCCAATCAAGA+AGG + chr5.3:3076123-3076142 MS.gene22288:intron 40.0%
ACTGTTGCTGCAATAGTCAT+TGG + chr5.3:3077531-3077550 MS.gene22288:CDS 40.0%
ACTGTTGGAACATTAGCTGT+TGG + chr5.3:3077489-3077508 MS.gene22288:CDS 40.0%
AGAACAGTTGTGGCAATTGA+AGG + chr5.3:3079233-3079252 MS.gene22288:CDS 40.0%
AGATGGTTCCAATACTTCAC+AGG + chr5.3:3076625-3076644 MS.gene22288:CDS 40.0%
AGGAAAGGAATTCCTTACCA+AGG - chr5.3:3076985-3077004 None:intergenic 40.0%
AGGTTGTCAATATGGAATGG+GGG + chr5.3:3077716-3077735 MS.gene22288:intron 40.0%
AGTCTATGCCAGCTATTTAC+TGG + chr5.3:3075658-3075677 MS.gene22288:intron 40.0%
ATATTATGCGCTGCATCTTG+GGG + chr5.3:3076339-3076358 MS.gene22288:CDS 40.0%
ATCCCGGTTGTGTAAGTATA+AGG - chr5.3:3077072-3077091 None:intergenic 40.0%
CAATAAAAAGGCAATCTGGC+AGG + chr5.3:3078112-3078131 MS.gene22288:intron 40.0%
CAATACTTCACAGGACAGAA+GGG + chr5.3:3076634-3076653 MS.gene22288:CDS 40.0%
CAGAACCTAACCTGATCATT+TGG - chr5.3:3077808-3077827 None:intergenic 40.0%
CATATTATGCGCTGCATCTT+GGG + chr5.3:3076338-3076357 MS.gene22288:CDS 40.0%
CATGAATCACCTATGAAGCA+TGG - chr5.3:3075879-3075898 None:intergenic 40.0%
CTGTTGGAACATTAGCTGTT+GGG + chr5.3:3077490-3077509 MS.gene22288:CDS 40.0%
CTTGCTAAAGATAAGGAGTG+CGG - chr5.3:3076197-3076216 None:intergenic 40.0%
CTTGTGCTAGTCATTAGATG+TGG - chr5.3:3076451-3076470 None:intergenic 40.0%
GAGTGAAGAGTAGAAGAAAG+TGG + chr5.3:3074921-3074940 MS.gene22288:CDS 40.0%
GATTCCAGATCTTCCATTGA+AGG + chr5.3:3079058-3079077 MS.gene22288:intron 40.0%
GTAGCATATACAAATCCACC+GGG - chr5.3:3076153-3076172 None:intergenic 40.0%
GTTGGCATCTTGAAGAAGAT+TGG + chr5.3:3079152-3079171 MS.gene22288:CDS 40.0%
TACTTACACAACCGGGATTA+AGG + chr5.3:3077074-3077093 MS.gene22288:intron 40.0%
TATGCCAGCTATTTACTGGT+TGG + chr5.3:3075662-3075681 MS.gene22288:intron 40.0%
TCACTAGAGTCGGATATGTT+TGG + chr5.3:3077961-3077980 MS.gene22288:CDS 40.0%
TCATTTCAGGACTCCTTTGA+TGG + chr5.3:3078877-3078896 MS.gene22288:intron 40.0%
TCTAATGACTAGCACAAGCA+AGG + chr5.3:3076453-3076472 MS.gene22288:CDS 40.0%
TCTCTTATGTGTCTAGGGAA+AGG + chr5.3:3078143-3078162 MS.gene22288:intron 40.0%
TGAACTGACATAGTGACACA+TGG - chr5.3:3075634-3075653 None:intergenic 40.0%
TGCCTTATACTTACACAACC+GGG + chr5.3:3077067-3077086 MS.gene22288:intron 40.0%
TGTGCTAGTCATTAGATGTG+GGG - chr5.3:3076449-3076468 None:intergenic 40.0%
! AGTCGTCTTATTACCACAAG+AGG - chr5.3:3078477-3078496 None:intergenic 40.0%
! ATATGGAATGGGGGAACTTT+TGG + chr5.3:3077725-3077744 MS.gene22288:CDS 40.0%
! CAGCCTATGCATCATTTTCA+CGG - chr5.3:3078765-3078784 None:intergenic 40.0%
! CTTAGTTAATGAAGGGCGTA+TGG - chr5.3:3078360-3078379 None:intergenic 40.0%
! CTTGCTACTTCTATCAAGTC+AGG - chr5.3:3078926-3078945 None:intergenic 40.0%
! TTGAAGAAGATTGGTCGTGA+CGG + chr5.3:3079161-3079180 MS.gene22288:CDS 40.0%
!! ACCCAAAGCTATTTGTTGTC+AGG + chr5.3:3076890-3076909 MS.gene22288:intron 40.0%
!! ATACGAGTGTTGGAAGGTTA+AGG + chr5.3:3074987-3075006 MS.gene22288:CDS 40.0%
!! CAGGAAGCATTTGCACAAAA+TGG + chr5.3:3076939-3076958 MS.gene22288:CDS 40.0%
!! TCACTTTTCGCAAAGCAAAC+CGG - chr5.3:3075731-3075750 None:intergenic 40.0%
!! TGTCCTATTCAAGTTGCACT+TGG + chr5.3:3076837-3076856 MS.gene22288:intron 40.0%
!! TGTGTGTTTGGATTGGTGTT+GGG + chr5.3:3075953-3075972 MS.gene22288:intron 40.0%
!! TTGTGTGTTTGGATTGGTGT+TGG + chr5.3:3075952-3075971 MS.gene22288:intron 40.0%
AATCCTCAACGACACCTTTG+AGG + chr5.3:3078946-3078965 MS.gene22288:CDS 45.0%
AATGTCACCGAAGATGGATC+AGG + chr5.3:3079350-3079369 MS.gene22288:CDS 45.0%
ACAGGAAGGACACCCATTTA+GGG - chr5.3:3079000-3079019 None:intergenic 45.0%
ACAGTTGTGGCAATTGAAGG+AGG + chr5.3:3079236-3079255 MS.gene22288:CDS 45.0%
ACCACCTTCAGAAGCTAAAC+CGG - chr5.3:3075047-3075066 None:intergenic 45.0%
ACTATTGCAGCAACAGTGTC+TGG - chr5.3:3077528-3077547 None:intergenic 45.0%
AGATGTTGCAGCATGTTTGC+AGG + chr5.3:3076920-3076939 MS.gene22288:CDS 45.0%
AGGTGAATCATCCTCATGCA+TGG - chr5.3:3078906-3078925 None:intergenic 45.0%
ATCAATTCGCTCCAAGTAGC+AGG - chr5.3:3077571-3077590 None:intergenic 45.0%
CAGCTAGAACCAACAATGCA+TGG - chr5.3:3076072-3076091 None:intergenic 45.0%
CAGGGTCTTCTTACAACATC+AGG + chr5.3:3077606-3077625 MS.gene22288:CDS 45.0%
CATGTCACCTCAAATACTCC+AGG - chr5.3:3078738-3078757 None:intergenic 45.0%
CCAAGATGCAGCGCATAATA+TGG - chr5.3:3076340-3076359 None:intergenic 45.0%
CCAATACTTCACAGGACAGA+AGG + chr5.3:3076633-3076652 MS.gene22288:CDS 45.0%
CCACTTGATTAAAATGCCCG+AGG - chr5.3:3076705-3076724 None:intergenic 45.0%
CCATATTATGCGCTGCATCT+TGG + chr5.3:3076337-3076356 MS.gene22288:CDS 45.0%
CCTTCTGTCCTGTGAAGTAT+TGG - chr5.3:3076636-3076655 None:intergenic 45.0%
CTCTACTTCATGCTCAAGGA+CGG - chr5.3:3076413-3076432 None:intergenic 45.0%
CTTGCCTTCAATGGAAGATC+TGG - chr5.3:3079065-3079084 None:intergenic 45.0%
GAAGGTTGTGATACGAGTGT+TGG + chr5.3:3074977-3074996 MS.gene22288:CDS 45.0%
GCTCCGTGAAAATGATGCAT+AGG + chr5.3:3078759-3078778 MS.gene22288:intron 45.0%
GCTGCAATAGTCATTGGTAC+TGG + chr5.3:3077537-3077556 MS.gene22288:CDS 45.0%
GGACTCGAACATTTGTTTGC+TGG + chr5.3:3078645-3078664 MS.gene22288:intron 45.0%
GGTACAAACCTCAGTACGAA+CGG - chr5.3:3078012-3078031 None:intergenic 45.0%
GGTTGGCATTTAACACGCTA+AGG + chr5.3:3075679-3075698 MS.gene22288:intron 45.0%
GTAACGCGGGTTCATTTAAG+TGG + chr5.3:3076376-3076395 MS.gene22288:CDS 45.0%
GTCATTAGATGTGGGGGAAT+AGG - chr5.3:3076442-3076461 None:intergenic 45.0%
GTGCTAGTCATTAGATGTGG+GGG - chr5.3:3076448-3076467 None:intergenic 45.0%
TACAGGAAGGACACCCATTT+AGG - chr5.3:3079001-3079020 None:intergenic 45.0%
TATTATGCGCTGCATCTTGG+GGG + chr5.3:3076340-3076359 MS.gene22288:CDS 45.0%
TCTACTTCATGCTCAAGGAC+GGG - chr5.3:3076412-3076431 None:intergenic 45.0%
TCTCAGGATGTCACTAGAGT+CGG + chr5.3:3077951-3077970 MS.gene22288:CDS 45.0%
TCTTACAACATCAGGACGCA+TGG + chr5.3:3077614-3077633 MS.gene22288:CDS 45.0%
TGGTACTAATGCCTGCTACT+TGG + chr5.3:3077557-3077576 MS.gene22288:CDS 45.0%
TGTTGGAAGGTTAAGGCAAG+TGG + chr5.3:3074994-3075013 MS.gene22288:CDS 45.0%
TTAGCAGCTGCTGGTATTGT+TGG + chr5.3:3079134-3079153 MS.gene22288:CDS 45.0%
TTTGCGAAAAGTGATGCGCT+CGG + chr5.3:3075737-3075756 MS.gene22288:intron 45.0%
! AACTTTGGTGATTTGGGTGC+AGG + chr5.3:3077873-3077892 MS.gene22288:intron 45.0%
! AAGGCAAGCATTGCTTTCAG+AGG - chr5.3:3077053-3077072 None:intergenic 45.0%
! AAGGCAAGTGGTTGATGCTA+TGG + chr5.3:3075006-3075025 MS.gene22288:CDS 45.0%
! ACTTTGGTGATTTGGGTGCA+GGG + chr5.3:3077874-3077893 MS.gene22288:intron 45.0%
! AGGCAAGCATTGCTTTCAGA+GGG - chr5.3:3077052-3077071 None:intergenic 45.0%
! TGAAGAAGATTGGTCGTGAC+GGG + chr5.3:3079162-3079181 MS.gene22288:CDS 45.0%
! TGTTGTGAAGGTGTGTGATG+TGG + chr5.3:3079091-3079110 MS.gene22288:CDS 45.0%
!! CCTCGGGCATTTTAATCAAG+TGG + chr5.3:3076702-3076721 MS.gene22288:CDS 45.0%
!! GCTTTCTGGAGTACCATGTT+AGG + chr5.3:3075373-3075392 MS.gene22288:intron 45.0%
!! GTTGTGATACGAGTGTTGGA+AGG + chr5.3:3074981-3075000 MS.gene22288:CDS 45.0%
!! TTACCTCAAAGGTGTCGTTG+AGG - chr5.3:3078952-3078971 None:intergenic 45.0%
!!! GTTTGGATTGGTTTTGGGAG+AGG + chr5.3:3075608-3075627 MS.gene22288:intron 45.0%
!! ATAAAAATTAGAAATTTAAA+CGG - chr5.3:3075325-3075344 None:intergenic 5.0%
!!! TTTTATTTAAATTTTGTTTA+TGG + chr5.3:3075460-3075479 MS.gene22288:intron 5.0%
AATCAAGAAGGTTCACCCGG+TGG + chr5.3:3076135-3076154 MS.gene22288:intron 50.0%
ACATAGATGTGCCTGTTGGC+CGG + chr5.3:3075709-3075728 MS.gene22288:intron 50.0%
ACCGAAGATGGATCAGGCAT+TGG + chr5.3:3079356-3079375 MS.gene22288:CDS 50.0%
ACCGGGTGAACCTTCTTGAT+TGG - chr5.3:3076136-3076155 None:intergenic 50.0%
ACGCACATAGATGTGCCTGT+TGG + chr5.3:3075705-3075724 MS.gene22288:intron 50.0%
AGATGTGCATGTAGCTGCCT+TGG + chr5.3:3076965-3076984 MS.gene22288:CDS 50.0%
AGGCAGCTACATGCACATCT+AGG - chr5.3:3076965-3076984 None:intergenic 50.0%
ATGAAGCATGGACTCAGACG+CGG - chr5.3:3075867-3075886 None:intergenic 50.0%
CCCAATGCCTGATCCATCTT+CGG - chr5.3:3079360-3079379 None:intergenic 50.0%
CCGAAGATGGATCAGGCATT+GGG + chr5.3:3079357-3079376 MS.gene22288:CDS 50.0%
CGTCTGAGTCCATGCTTCAT+AGG + chr5.3:3075867-3075886 MS.gene22288:intron 50.0%
GCCAATCAAGAAGGTTCACC+CGG + chr5.3:3076132-3076151 MS.gene22288:intron 50.0%
GGATGGGATTTAACGCGCTA+CGG + chr5.3:3076028-3076047 MS.gene22288:intron 50.0%
GTCGCTCTACTTCATGCTCA+AGG - chr5.3:3076417-3076436 None:intergenic 50.0%
GTGTGATGTGGTGACTCGAA+GGG + chr5.3:3079103-3079122 MS.gene22288:CDS 50.0%
TCACAGGACAGAAGGGAACT+TGG + chr5.3:3076641-3076660 MS.gene22288:CDS 50.0%
TCATGCATGGCAGCCATCAA+AGG - chr5.3:3078893-3078912 None:intergenic 50.0%
TCGTGAGGAGAGTCATTCTC+AGG + chr5.3:3077935-3077954 MS.gene22288:CDS 50.0%
TGCATGTAGCTGCCTTGGTA+AGG + chr5.3:3076970-3076989 MS.gene22288:intron 50.0%
TGTATCTCGGTGACATCGTG+AGG + chr5.3:3077920-3077939 MS.gene22288:CDS 50.0%
TGTGTGATGTGGTGACTCGA+AGG + chr5.3:3079102-3079121 MS.gene22288:CDS 50.0%
TTTCAACGCCGTTCGTACTG+AGG + chr5.3:3078001-3078020 MS.gene22288:CDS 50.0%
! CGAAGATGGATCAGGCATTG+GGG + chr5.3:3079358-3079377 MS.gene22288:CDS 50.0%
! GCAAGTGGTTGATGCTATGG+CGG + chr5.3:3075009-3075028 MS.gene22288:CDS 50.0%
! TTTGATGGCTGCCATGCATG+AGG + chr5.3:3078892-3078911 MS.gene22288:CDS 50.0%
!! AAGAGTGGTAGTGGGAGTGA+CGG + chr5.3:3074847-3074866 MS.gene22288:CDS 50.0%
ACAATGCATGGCGCGTCTGT+TGG - chr5.3:3076060-3076079 None:intergenic 55.0%
ACAGACGCGCCATGCATTGT+TGG + chr5.3:3076060-3076079 MS.gene22288:intron 55.0%
TCATGCTCAAGGACGGGAGA+TGG - chr5.3:3076406-3076425 None:intergenic 55.0%
! AAGATTGGTCGTGACGGGAG+TGG + chr5.3:3079167-3079186 MS.gene22288:CDS 55.0%
! AGTGGTTGATGCTATGGCGG+TGG + chr5.3:3075012-3075031 MS.gene22288:CDS 55.0%
! GCCGGTTTAGCTTCTGAAGG+TGG + chr5.3:3075043-3075062 MS.gene22288:CDS 55.0%
!! CACGCCGGTTTAGCTTCTGA+AGG + chr5.3:3075040-3075059 MS.gene22288:CDS 55.0%
!! TCGGTGTCATGTCGTGTTGC+CGG - chr5.3:3075776-3075795 None:intergenic 55.0%
CGCAAAGCAAACCGGCCAAC+AGG - chr5.3:3075723-3075742 None:intergenic 60.0%
GCATCACAGGTGGACGGAGT+AGG + chr5.3:3079192-3079211 MS.gene22288:CDS 60.0%
GCTCGGATACGTGTCGTGTC+CGG + chr5.3:3075754-3075773 MS.gene22288:intron 60.0%
GCTGCTCGATTAGCAGCTGC+TGG + chr5.3:3079125-3079144 MS.gene22288:CDS 60.0%
GTGGTGGCATCACAGGTGGA+CGG + chr5.3:3079186-3079205 MS.gene22288:CDS 60.0%
! ATTGGTCGTGACGGGAGTGG+TGG + chr5.3:3079170-3079189 MS.gene22288:CDS 60.0%
ATGGCGGTGGAGATGCACGC+CGG + chr5.3:3075025-3075044 MS.gene22288:CDS 65.0%
GACGGGAGTGGTGGCATCAC+AGG + chr5.3:3079179-3079198 MS.gene22288:CDS 65.0%
GGGAGTGGTGGCATCACAGG+TGG + chr5.3:3079182-3079201 MS.gene22288:CDS 65.0%
!! GGTAGTGGGAGTGACGGCGA+CGG + chr5.3:3074853-3074872 MS.gene22288:CDS 65.0%
AGTGGGAGTGACGGCGACGG+TGG + chr5.3:3074856-3074875 MS.gene22288:CDS 70.0%
GGGAGTGACGGCGACGGTGG+CGG + chr5.3:3074859-3074878 MS.gene22288:CDS 75.0%
! AGTGACGGCGACGGTGGCGG+TGG + chr5.3:3074862-3074881 MS.gene22288:CDS 75.0%
!! GACGGCGACGGTGGCGGTGG+CGG + chr5.3:3074865-3074884 MS.gene22288:CDS 80.0%
!! GGTGGCGGCGTGTGCGGTGG+CGG + chr5.3:3074880-3074899 MS.gene22288:CDS 80.0%
!! GGTGGCGGTGGCGGCGTGTG+CGG + chr5.3:3074874-3074893 MS.gene22288:CDS 80.0%
!! GGCGGTGGCGGCGTGTGCGG+TGG + chr5.3:3074877-3074896 MS.gene22288:CDS 85.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 3074842 3079409 3074842 ID=MS.gene22288
chr5.3 mRNA 3074842 3079409 3074842 ID=MS.gene22288.t1;Parent=MS.gene22288
chr5.3 exon 3074842 3075113 3074842 ID=MS.gene22288.t1.exon1;Parent=MS.gene22288.t1
chr5.3 CDS 3074842 3075113 3074842 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
chr5.3 exon 3076324 3076474 3076324 ID=MS.gene22288.t1.exon2;Parent=MS.gene22288.t1
chr5.3 CDS 3076324 3076474 3076324 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
chr5.3 exon 3076578 3076751 3076578 ID=MS.gene22288.t1.exon3;Parent=MS.gene22288.t1
chr5.3 CDS 3076578 3076751 3076578 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
chr5.3 exon 3076912 3076986 3076912 ID=MS.gene22288.t1.exon4;Parent=MS.gene22288.t1
chr5.3 CDS 3076912 3076986 3076912 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
chr5.3 exon 3077480 3077635 3077480 ID=MS.gene22288.t1.exon5;Parent=MS.gene22288.t1
chr5.3 CDS 3077480 3077635 3077480 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
chr5.3 exon 3077718 3077816 3077718 ID=MS.gene22288.t1.exon6;Parent=MS.gene22288.t1
chr5.3 CDS 3077718 3077816 3077718 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
chr5.3 exon 3077895 3078022 3077895 ID=MS.gene22288.t1.exon7;Parent=MS.gene22288.t1
chr5.3 CDS 3077895 3078022 3077895 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
chr5.3 exon 3078886 3078967 3078886 ID=MS.gene22288.t1.exon8;Parent=MS.gene22288.t1
chr5.3 CDS 3078886 3078967 3078886 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
chr5.3 exon 3079059 3079409 3079059 ID=MS.gene22288.t1.exon9;Parent=MS.gene22288.t1
chr5.3 CDS 3079059 3079409 3079059 ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1
Gene Sequence

>MS.gene22288

ATGGGAAGAGTGGTAGTGGGAGTGACGGCGACGGTGGCGGTGGCGGCGTGTGCGGTGGCGGCAGTTATTGTCGCTAGAAGAGTGAAGAGTAGAAGAAAGTGGAAGAAAGTAGCGAATGTGTTGAAAGAGTTTGAAGAAGGTTGTGATACGAGTGTTGGAAGGTTAAGGCAAGTGGTTGATGCTATGGCGGTGGAGATGCACGCCGGTTTAGCTTCTGAAGGTGGTTCTAAGCTCAAAATGCTTCTTACCTATGTTGATAATCTTCCTAACGGGTAATCACTTTTTTTCTTTCTTAAAGTTCATTTTTTTTGTGTTCTTAATCTTAACTGTGCTATTGAATAAGTTGATTTTTTTTACTATTAAGCTGTTGCTTTCAAAATGCTGACATTTTTTGTTTTTTGATTTATTATGTTTGGTTCAACAGTGTCATTTCAACGGTTTTTTTCCTTCCCAGTTTTGTCTATGTTTTTGTTTTTCACGCCGTTTAAATTTCTAATTTTTATGTACAGCTGTTTCTGTTGTCTATTTCATGCTTTCTGGAGTACCATGTTAGGTGTTTTTCATTGCTGTTTGCATTTGATTTGATTTTTGAATAATGTGAAAGACATTTTTATGAAATTTTATTTAAATTTTGTTTATGGAAAATGTACTTTGGATTTGGACATTTAATAAATGGCTGTTGTCTAATTTACTTTGTGAAAGTGAAGCATGATTTGTGTCAATGATTAAACTAATTTGCAAGCTGTAAGAATGGTTGATAGATTGTGTTTGGATTGGTTTTGGGAGAGGCCATGTGTCACTATGTCAGTTCAGTTGAGTCTATGCCAGCTATTTACTGGTTGGCATTTAACACGCTAAGGCACACGCACATAGATGTGCCTGTTGGCCGGTTTGCTTTGCGAAAAGTGATGCGCTCGGATACGTGTCGTGTCCGGCAACACGACATGACACCGACACATATGATTACATTGAATCATGTCATTTTCTCAAATTTTATCGGTATGGGCGTGTTCGTGTTGTGTCCGCGTCTGAGTCCATGCTTCATAGGTGATTCATGATTTGTGTCGGTAATCAAGCTAATTTTTGAAAGCTGTAAGAATGATTGATAGATTGTGTGTTTGGATTGGTGTTGGGAAAAAAGACAATGTGTCACTGTGTTAGTTGAGTCTATGACAGCTATTTATTGGGATGGGATTTAACGCGCTACGGCACATGCCAACAGACGCGCCATGCATTGTTGGTTCTAGCTGTACATTTTTGTTTATATCAAATTTGAGCGTTACTAGATCTGCCAATCAAGAAGGTTCACCCGGTGGATTTGTATATGCTACTATGAGCACACATTGCAGAAACCGCACTCCTTATCTTTAGCAAGATTTGGTGATGCTTACACGTGTTGTCAACAACACTCATAAGCATAACATCTTTTATTATGATTACCGAGTCCTTTTGTTAAATTGGTTTGTTTGTCTTTTTTATCAGTACTGAGAAAGGACCATATTATGCGCTGCATCTTGGGGGAACAAATTTTAGGGTAACGCGGGTTCATTTAAGTGGTCAACCATCTCCCGTCCTTGAGCATGAAGTAGAGCGACAACCTATTCCCCCACATCTAATGACTAGCACAAGCAAGGTGACATGATCAAAACCCTAAAACTTTGGTTTTCTTTGCTATTCATTTGTTATGATAATGTCCTTTTCATGTAATAACGTTAAATTGAATTTTATGCTCGCAGGATCTCTTTGATTTTATCGCATCATCGTTAAAAGAATTCATTGCTAAAGATGGTTCCAATACTTCACAGGACAGAAGGGAACTTGGCTTTACATTCTCCTTCCCTATGAAACAAATGTCTGTTTCCTCGGGCATTTTAATCAAGTGGACAAAAGGGTTTTCCATTGTAGATATGGTTAGTCACTTTGATTTCTTAATTGATCTTTAAAATTGGCTATTTTTGTTTTCTTCTCCATAAATAGTTACCAAACAAGCATGTATGTCCTATTCAAGTTGCACTTGGTTTTTCAGTATAGAGATGAAAATATTAACAACCCAAAGCTATTTGTTGTCAGGTTGGAAGAGATGTTGCAGCATGTTTGCAGGAAGCATTTGCACAAAATGGCCTAGATGTGCATGTAGCTGCCTTGGTAAGGAATTCCTTTCCTTAGCCTAATTGTATGATTTGTTTTTCTTTTTTTATCCAATATTTCCCTCTGAAAGCAATGCTTGCCTTATACTTACACAACCGGGATTAAGGTATAATACATAATGTAATTTATGAGCTCGCTTCCGCCTTCAACAGATTGTTTTTTTCTAGGGCATATTTATGTTTTTGATCTAAATGTAAGGAATTTATAAGTGTGTTGAATGAATCAGTTTTTCGCTGCAAATCCTTCTTTTATACAAAAACTTTTAATTCTATAATAGTGAAATGGTGAATAAATGATAATAGTTGTAAATGGTGCTTGTATACAATAATGTCGATAAATTATGTCATGATTTTTATTTCTATAGTTGTGTAGTTATTATTTTTAGATATCTTAATTTGGTGTGAAGGAAAATGGGTGTTGTCATGTAAAATAAATCCTATTTGTTTCATTATATTACTTAAAAATATGTTTTTGATTTCATTTTAAGCAGGTTAATGATACTGTTGGAACATTAGCTGTTGGGCATTATCATGATCCAGACACTGTTGCTGCAATAGTCATTGGTACTGGTACTAATGCCTGCTACTTGGAGCGAATTGATGCTATTATCAAGTGTCAGGGTCTTCTTACAACATCAGGACGCATGGTATTGTTCTCTCTTTTTTCAGTTCTTATTTTTCATTTTTGGGTTCTAGTTATGACTTATGAATTTATTTTCCGTCTTTTAGGTTGTCAATATGGAATGGGGGAACTTTTGGTCGTCTCATTTACCAAGAACACAGTATGACATTGAATTAGATGCTGAAAGCCCTAATCCAAATGATCAGGTTAGGTTCTGCTCCTAATGACTTTTGTTGCTTGATTTGTCATTTGTTATGACTAAAACTTTGGTGATTTGGGTGCAGGGTTTTGAGAAAATGATATCAGGAATGTATCTCGGTGACATCGTGAGGAGAGTCATTCTCAGGATGTCACTAGAGTCGGATATGTTTGGACCTATTTCTTCGAAGCTTTCAACGCCGTTCGTACTGAGGTTTGTACCGATTCTCAGTCATACACTATGTATGACCAATGTCTTTAGGAAAACATACTTGATACTATGGCCAGATGTGTTCTGTTATTCAATAAAAAGGCAATCTGGCAGGACAAAGCATCTCTTATGTGTCTAGGGAAAGGTCAAACCTATTGTTGTTCTATTGTAGGCAGTTTTATCTTGGTTATACAAAGCATTGGAAAAGGCAAATTCTACACTTACAATTTTTTTAAAATATTACATTATTTTTCAACGTTGATGTGTATATATATTTATCTGGTGATTTGGTCTCAGCCTACCTTAATTTTTTTAGACATTGAATATTTCTGTTCTACCATACGCCCTTCATTAACTAAGTTAATAGTTCTGTTTCAAGTTCAATTTCATTGACGTCCAATTGTAGTGCATGAAACATAGTGGATCGATTTTTTTTTTTTGCTTTCTTTCATATCCTCTTGTGGTAATAAGACGACTTCGTGTTTAACTATATTTTTCTTTTAGCACACAAGGGGCAATGATTCATTGCTTAGTAAAATTGACTTTGCTATAAACTTGGACTTACATATGACAACTGCCTTTGGCTTTTCTTGTTTTGATTTTATTACATGCTTTTTGAAATGTTGGACTCGAACATTTGTTTGCTGGCTATGCCTGTATTCTATTCTATGTACACTTGATTGAACTTGCAAACATCATGCACAGTTTGTTTTTTCCTGGAGTATTTGAGGTGACATGTGCTCCGTGAAAATGATGCATAGGCTGATAAGATATATTTCCTTGGATAACTACAATGTTCCATACTCAATTGTTCTGGTTTTCCAAATCTCTGGTTTGAATTTGATCTGAAACTCTTGTCATTTCAGGACTCCTTTGATGGCTGCCATGCATGAGGATGATTCACCTGACTTGATAGAAGTAGCAAGAATCCTCAACGACACCTTTGAGGTAAATAAGTCAGACACCATATTTTTTGTCCCTAAATGGGTGTCCTTCCTGTAAATCTAAAAACCATATATCTTGTATTTGGCTGTCTTAGATTCCAGATCTTCCATTGAAGGCAAGAAAAATTGTTGTGAAGGTGTGTGATGTGGTGACTCGAAGGGCTGCTCGATTAGCAGCTGCTGGTATTGTTGGCATCTTGAAGAAGATTGGTCGTGACGGGAGTGGTGGCATCACAGGTGGACGGAGTAGGAGTGATATAAAAATGAAAAGAACAGTTGTGGCAATTGAAGGAGGATTATACTCGAGCTATACATTGTTTAGAGAGTACTTGCATGAAGCTTTAAACGAAATATTGGGGGAAGATATTGCTAAGCATGTAATTCTTAATGTCACCGAAGATGGATCAGGCATTGGGGCTGCATTGCTAGCTGCATCATATTCTTAA

Protein sequence

>MS.gene22288.t1

MGRVVVGVTATVAVAACAVAAVIVARRVKSRRKWKKVANVLKEFEEGCDTSVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTYVDNLPNGTEKGPYYALHLGGTNFRVTRVHLSGQPSPVLEHEVERQPIPPHLMTSTSKDLFDFIASSLKEFIAKDGSNTSQDRRELGFTFSFPMKQMSVSSGILIKWTKGFSIVDMVGRDVAACLQEAFAQNGLDVHVAALVNDTVGTLAVGHYHDPDTVAAIVIGTGTNACYLERIDAIIKCQGLLTTSGRMVVNMEWGNFWSSHLPRTQYDIELDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSLESDMFGPISSKLSTPFVLRTPLMAAMHEDDSPDLIEVARILNDTFEIPDLPLKARKIVVKVCDVVTRRAARLAAAGIVGILKKIGRDGSGGITGGRSRSDIKMKRTVVAIEGGLYSSYTLFREYLHEALNEILGEDIAKHVILNVTEDGSGIGAALLAASYS