Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22288.t1 | XP_003610965.1 | 98.4 | 496 | 7 | 1 | 1 | 495 | 1 | 496 | 1.50E-266 | 928.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22288.t1 | Q9LPS1 | 71.2 | 496 | 139 | 3 | 1 | 493 | 1 | 495 | 2.3e-191 | 669.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22288.t1 | G7K998 | 98.4 | 496 | 7 | 1 | 1 | 495 | 1 | 496 | 1.1e-266 | 928.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04915 | MS.gene22288 | 0.814087 | 1.84E-51 | -1.69E-46 |
MS.gene04917 | MS.gene22288 | 0.816892 | 4.37E-52 | -1.69E-46 |
MS.gene049283 | MS.gene22288 | 0.808115 | 3.63E-50 | -1.69E-46 |
MS.gene049983 | MS.gene22288 | 0.801005 | 1.10E-48 | -1.69E-46 |
MS.gene04998 | MS.gene22288 | 0.80711 | 5.93E-50 | -1.69E-46 |
MS.gene050359 | MS.gene22288 | 0.845281 | 4.48E-59 | -1.69E-46 |
MS.gene050361 | MS.gene22288 | 0.805585 | 1.24E-49 | -1.69E-46 |
MS.gene050414 | MS.gene22288 | 0.834161 | 3.52E-56 | -1.69E-46 |
MS.gene050646 | MS.gene22288 | 0.827944 | 1.18E-54 | -1.69E-46 |
MS.gene050654 | MS.gene22288 | 0.847662 | 1.00E-59 | -1.69E-46 |
MS.gene050838 | MS.gene22288 | 0.809567 | 1.77E-50 | -1.69E-46 |
MS.gene050931 | MS.gene22288 | 0.804104 | 2.54E-49 | -1.69E-46 |
MS.gene051043 | MS.gene22288 | 0.828464 | 8.86E-55 | -1.69E-46 |
MS.gene051184 | MS.gene22288 | 0.802166 | 6.38E-49 | -1.69E-46 |
MS.gene051233 | MS.gene22288 | 0.808608 | 2.85E-50 | -1.69E-46 |
MS.gene051234 | MS.gene22288 | 0.81324 | 2.83E-51 | -1.69E-46 |
MS.gene051852 | MS.gene22288 | 0.814394 | 1.58E-51 | -1.69E-46 |
MS.gene052016 | MS.gene22288 | 0.833353 | 5.60E-56 | -1.69E-46 |
MS.gene052242 | MS.gene22288 | -0.830055 | 3.64E-55 | -1.69E-46 |
MS.gene052296 | MS.gene22288 | 0.801393 | 9.20E-49 | -1.69E-46 |
MS.gene052307 | MS.gene22288 | 0.807451 | 5.02E-50 | -1.69E-46 |
MS.gene052342 | MS.gene22288 | 0.819582 | 1.08E-52 | -1.69E-46 |
MS.gene052609 | MS.gene22288 | 0.80341 | 3.53E-49 | -1.69E-46 |
MS.gene053143 | MS.gene22288 | 0.817778 | 2.76E-52 | -1.69E-46 |
MS.gene053726 | MS.gene22288 | 0.815629 | 8.38E-52 | -1.69E-46 |
MS.gene054178 | MS.gene22288 | 0.819784 | 9.68E-53 | -1.69E-46 |
MS.gene054892 | MS.gene22288 | 0.820439 | 6.86E-53 | -1.69E-46 |
MS.gene054893 | MS.gene22288 | 0.829458 | 5.09E-55 | -1.69E-46 |
MS.gene056097 | MS.gene22288 | 0.82194 | 3.09E-53 | -1.69E-46 |
MS.gene056181 | MS.gene22288 | 0.805806 | 1.12E-49 | -1.69E-46 |
MS.gene056285 | MS.gene22288 | 0.840113 | 1.06E-57 | -1.69E-46 |
MS.gene057919 | MS.gene22288 | 0.825972 | 3.50E-54 | -1.69E-46 |
MS.gene058261 | MS.gene22288 | 0.856307 | 3.52E-62 | -1.69E-46 |
MS.gene058429 | MS.gene22288 | 0.811233 | 7.76E-51 | -1.69E-46 |
MS.gene058638 | MS.gene22288 | 0.812803 | 3.53E-51 | -1.69E-46 |
MS.gene058639 | MS.gene22288 | 0.810186 | 1.31E-50 | -1.69E-46 |
MS.gene058720 | MS.gene22288 | 0.817701 | 2.88E-52 | -1.69E-46 |
MS.gene058758 | MS.gene22288 | 0.813669 | 2.28E-51 | -1.69E-46 |
MS.gene059007 | MS.gene22288 | 0.821861 | 3.22E-53 | -1.69E-46 |
MS.gene059170 | MS.gene22288 | 0.836648 | 8.28E-57 | -1.69E-46 |
MS.gene060259 | MS.gene22288 | 0.81634 | 5.82E-52 | -1.69E-46 |
MS.gene06052 | MS.gene22288 | 0.801658 | 8.12E-49 | -1.69E-46 |
MS.gene060563 | MS.gene22288 | 0.836789 | 7.61E-57 | -1.69E-46 |
MS.gene060932 | MS.gene22288 | 0.842586 | 2.36E-58 | -1.69E-46 |
MS.gene061006 | MS.gene22288 | 0.814325 | 1.63E-51 | -1.69E-46 |
MS.gene061100 | MS.gene22288 | 0.846952 | 1.57E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene22288 | MS.gene049065 | PPI |
MS.gene22288 | MS.gene024702 | PPI |
MS.gene22288 | MS.gene64215 | PPI |
MS.gene22288 | MS.gene64012 | PPI |
MS.gene22288 | MS.gene21950 | PPI |
MS.gene22288 | MS.gene015822 | PPI |
MS.gene22288 | MS.gene27072 | PPI |
MS.gene22288 | MS.gene21680 | PPI |
MS.gene22288 | MS.gene05986 | PPI |
MS.gene22288 | MS.gene24159 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22288.t1 | MTR_5g009000 | 98.387 | 496 | 7 | 1 | 1 | 495 | 1 | 496 | 0.0 | 1001 |
MS.gene22288.t1 | MTR_8g102460 | 56.751 | 474 | 192 | 5 | 26 | 495 | 26 | 490 | 0.0 | 536 |
MS.gene22288.t1 | MTR_8g014530 | 55.110 | 499 | 210 | 5 | 1 | 495 | 1 | 489 | 0.0 | 517 |
MS.gene22288.t1 | MTR_6g088795 | 52.350 | 468 | 210 | 3 | 32 | 495 | 30 | 488 | 8.28e-174 | 498 |
MS.gene22288.t1 | MTR_1g025140 | 49.163 | 478 | 224 | 6 | 26 | 495 | 24 | 490 | 1.52e-150 | 439 |
MS.gene22288.t1 | MTR_8g102460 | 58.912 | 331 | 132 | 3 | 26 | 352 | 26 | 356 | 8.87e-137 | 399 |
MS.gene22288.t1 | MTR_8g102460 | 55.220 | 364 | 150 | 5 | 136 | 495 | 1 | 355 | 1.73e-134 | 393 |
MS.gene22288.t1 | MTR_1g025140 | 50.696 | 359 | 168 | 4 | 26 | 376 | 24 | 381 | 2.42e-116 | 348 |
MS.gene22288.t1 | MTR_4g097900 | 40.441 | 272 | 114 | 3 | 221 | 491 | 3 | 227 | 1.14e-54 | 183 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22288.t1 | AT1G50460 | 72.034 | 472 | 128 | 3 | 25 | 493 | 25 | 495 | 0.0 | 701 |
MS.gene22288.t1 | AT3G20040 | 67.339 | 496 | 155 | 3 | 1 | 493 | 1 | 492 | 0.0 | 637 |
MS.gene22288.t1 | AT1G50460 | 71.040 | 404 | 113 | 3 | 93 | 493 | 17 | 419 | 0.0 | 590 |
MS.gene22288.t1 | AT2G19860 | 55.511 | 499 | 209 | 3 | 1 | 495 | 1 | 490 | 0.0 | 537 |
MS.gene22288.t1 | AT4G29130 | 55.311 | 499 | 210 | 3 | 1 | 495 | 1 | 490 | 0.0 | 536 |
MS.gene22288.t1 | AT1G50460 | 73.333 | 330 | 86 | 1 | 25 | 352 | 25 | 354 | 1.17e-178 | 506 |
MS.gene22288.t1 | AT1G47840 | 49.462 | 465 | 210 | 7 | 40 | 495 | 43 | 491 | 7.58e-145 | 424 |
MS.gene22288.t1 | AT2G19860 | 52.699 | 389 | 171 | 3 | 111 | 495 | 2 | 381 | 6.40e-138 | 403 |
MS.gene22288.t1 | AT1G47840 | 51.572 | 318 | 147 | 4 | 40 | 352 | 43 | 358 | 4.83e-103 | 313 |
MS.gene22288.t1 | AT4G37840 | 38.994 | 477 | 269 | 6 | 22 | 492 | 22 | 482 | 1.19e-99 | 308 |
MS.gene22288.t1 | AT1G47845 | 46.528 | 144 | 73 | 3 | 276 | 417 | 40 | 181 | 6.83e-35 | 129 |
Find 125 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGAAGCATTTGCACAAAA+TGG | 0.231688 | 5.3:+3076939 | MS.gene22288:CDS |
TGAAGCTTTAAACGAAATAT+TGG | 0.248960 | 5.3:+3079298 | MS.gene22288:CDS |
CTAACCTGATCATTTGGATT+AGG | 0.252444 | 5.3:-3077799 | None:intergenic |
CATATTATGCGCTGCATCTT+GGG | 0.273264 | 5.3:+3076338 | MS.gene22288:CDS |
GAAGCTTTAAACGAAATATT+GGG | 0.286275 | 5.3:+3079299 | MS.gene22288:CDS |
TAACCTGATCATTTGGATTA+GGG | 0.298457 | 5.3:-3077798 | None:intergenic |
TCAATGTCATACTGTGTTCT+TGG | 0.301091 | 5.3:-3077760 | None:intergenic |
TCATTTCAGGACTCCTTTGA+TGG | 0.304467 | 5.3:+3078877 | MS.gene22288:intron |
CTTGCCTTCAATGGAAGATC+TGG | 0.322162 | 5.3:-3079062 | None:intergenic |
GAAACAGACATTTGTTTCAT+AGG | 0.324581 | 5.3:-3076680 | None:intergenic |
CCATATTATGCGCTGCATCT+TGG | 0.333001 | 5.3:+3076337 | MS.gene22288:CDS |
CCAAGATGCAGCGCATAATA+TGG | 0.343745 | 5.3:-3076337 | None:intergenic |
GGTGGCGGCGTGTGCGGTGG+CGG | 0.359887 | 5.3:+3074880 | MS.gene22288:CDS |
AGATGTTGCAGCATGTTTGC+AGG | 0.362698 | 5.3:+3076920 | MS.gene22288:CDS |
CCTTCTGTCCTGTGAAGTAT+TGG | 0.373474 | 5.3:-3076633 | None:intergenic |
CAGAACCTAACCTGATCATT+TGG | 0.382556 | 5.3:-3077805 | None:intergenic |
GATTCCAGATCTTCCATTGA+AGG | 0.383594 | 5.3:+3079058 | MS.gene22288:intron |
GTTGGCATCTTGAAGAAGAT+TGG | 0.393117 | 5.3:+3079152 | MS.gene22288:CDS |
GTTGAAAGCTTCGAAGAAAT+AGG | 0.397856 | 5.3:-3077985 | None:intergenic |
CCGAAGATGGATCAGGCATT+GGG | 0.399324 | 5.3:+3079357 | MS.gene22288:CDS |
AAAGAATTCATTGCTAAAGA+TGG | 0.402632 | 5.3:+3076608 | MS.gene22288:CDS |
ACTATTGCAGCAACAGTGTC+TGG | 0.403276 | 5.3:-3077525 | None:intergenic |
TTAGCAGCTGCTGGTATTGT+TGG | 0.409433 | 5.3:+3079134 | MS.gene22288:CDS |
ATTCTTAATGTCACCGAAGA+TGG | 0.411432 | 5.3:+3079344 | MS.gene22288:CDS |
TGATGCTATTATCAAGTGTC+AGG | 0.416448 | 5.3:+3077587 | MS.gene22288:CDS |
TTAGGTTGTCAATATGGAAT+GGG | 0.425444 | 5.3:+3077714 | MS.gene22288:intron |
GACGGCGACGGTGGCGGTGG+CGG | 0.428913 | 5.3:+3074865 | MS.gene22288:CDS |
TCACTAGAGTCGGATATGTT+TGG | 0.429372 | 5.3:+3077961 | MS.gene22288:CDS |
GGGAGTGACGGCGACGGTGG+CGG | 0.445488 | 5.3:+3074859 | MS.gene22288:CDS |
GACGGGAGTGGTGGCATCAC+AGG | 0.450160 | 5.3:+3079179 | MS.gene22288:CDS |
GAAACAAATGTCTGTTTCCT+CGG | 0.450286 | 5.3:+3076685 | MS.gene22288:CDS |
GAGTGAAGAGTAGAAGAAAG+TGG | 0.451502 | 5.3:+3074921 | MS.gene22288:CDS |
GAAGATGGGAAGAGTGGTAG+TGG | 0.452894 | 5.3:+3074838 | None:intergenic |
CTTGCTACTTCTATCAAGTC+AGG | 0.456183 | 5.3:-3078923 | None:intergenic |
ACCACCTTCAGAAGCTAAAC+CGG | 0.457674 | 5.3:-3075044 | None:intergenic |
AATCCTCAACGACACCTTTG+AGG | 0.459020 | 5.3:+3078946 | MS.gene22288:CDS |
TTTAGGTTGTCAATATGGAA+TGG | 0.460418 | 5.3:+3077713 | MS.gene22288:intron |
TCACAGGACAGAAGGGAACT+TGG | 0.465295 | 5.3:+3076641 | MS.gene22288:CDS |
GGTGGCGGTGGCGGCGTGTG+CGG | 0.466342 | 5.3:+3074874 | MS.gene22288:CDS |
AGTGACGGCGACGGTGGCGG+TGG | 0.467501 | 5.3:+3074862 | MS.gene22288:CDS |
CCCAATGCCTGATCCATCTT+CGG | 0.469673 | 5.3:-3079357 | None:intergenic |
AAACAGACATTTGTTTCATA+GGG | 0.475582 | 5.3:-3076679 | None:intergenic |
GGCGGTGGCGGCGTGTGCGG+TGG | 0.477522 | 5.3:+3074877 | MS.gene22288:CDS |
ACCGAAGATGGATCAGGCAT+TGG | 0.478914 | 5.3:+3079356 | MS.gene22288:CDS |
ATACGAGTGTTGGAAGGTTA+AGG | 0.481037 | 5.3:+3074987 | MS.gene22288:CDS |
CTGTTGGAACATTAGCTGTT+GGG | 0.486153 | 5.3:+3077490 | MS.gene22288:CDS |
ATCAATTCGCTCCAAGTAGC+AGG | 0.487352 | 5.3:-3077568 | None:intergenic |
TGGTACTAATGCCTGCTACT+TGG | 0.489030 | 5.3:+3077557 | MS.gene22288:CDS |
AAGCAGGTTAATGATACTGT+TGG | 0.489212 | 5.3:+3077474 | MS.gene22288:intron |
AGGCAGCTACATGCACATCT+AGG | 0.489720 | 5.3:-3076962 | None:intergenic |
AAGCCCTAATCCAAATGATC+AGG | 0.491358 | 5.3:+3077795 | MS.gene22288:CDS |
CAGGGTCTTCTTACAACATC+AGG | 0.499400 | 5.3:+3077606 | MS.gene22288:CDS |
TGAAGAAGATTGGTCGTGAC+GGG | 0.506742 | 5.3:+3079162 | MS.gene22288:CDS |
AGAACAGTTGTGGCAATTGA+AGG | 0.507809 | 5.3:+3079233 | MS.gene22288:CDS |
CTTGTGCTAGTCATTAGATG+TGG | 0.509151 | 5.3:-3076448 | None:intergenic |
AATGTCACCGAAGATGGATC+AGG | 0.512205 | 5.3:+3079350 | MS.gene22288:CDS |
ACTGTTGCTGCAATAGTCAT+TGG | 0.514702 | 5.3:+3077531 | MS.gene22288:CDS |
GTAACGCGGGTTCATTTAAG+TGG | 0.515646 | 5.3:+3076376 | MS.gene22288:CDS |
TCGTGAGGAGAGTCATTCTC+AGG | 0.519035 | 5.3:+3077935 | MS.gene22288:CDS |
GCTGCTCGATTAGCAGCTGC+TGG | 0.519064 | 5.3:+3079125 | MS.gene22288:CDS |
ATATTATGCGCTGCATCTTG+GGG | 0.519770 | 5.3:+3076339 | MS.gene22288:CDS |
AAACAAATGTCTGTTTCCTC+GGG | 0.521874 | 5.3:+3076686 | MS.gene22288:CDS |
AAGGCAAGTGGTTGATGCTA+TGG | 0.522670 | 5.3:+3075006 | MS.gene22288:CDS |
AGATGTGCATGTAGCTGCCT+TGG | 0.522932 | 5.3:+3076965 | MS.gene22288:CDS |
ATGTTGATAATCTTCCTAAC+GGG | 0.524290 | 5.3:+3075092 | MS.gene22288:CDS |
AGACATTTGTTTCATAGGGA+AGG | 0.529304 | 5.3:-3076675 | None:intergenic |
GTCTGACTTATTTACCTCAA+AGG | 0.532138 | 5.3:-3078960 | None:intergenic |
CTCTACTTCATGCTCAAGGA+CGG | 0.537992 | 5.3:-3076410 | None:intergenic |
CCAATACTTCACAGGACAGA+AGG | 0.538946 | 5.3:+3076633 | MS.gene22288:CDS |
AGTGGGAGTGACGGCGACGG+TGG | 0.547039 | 5.3:+3074856 | MS.gene22288:CDS |
GCCGGTTTAGCTTCTGAAGG+TGG | 0.550536 | 5.3:+3075043 | MS.gene22288:CDS |
TTTCAACGCCGTTCGTACTG+AGG | 0.551274 | 5.3:+3078001 | MS.gene22288:CDS |
TATGTTGATAATCTTCCTAA+CGG | 0.553392 | 5.3:+3075091 | MS.gene22288:CDS |
AAGCTTTAAACGAAATATTG+GGG | 0.554190 | 5.3:+3079300 | MS.gene22288:CDS |
AAGATTGGTCGTGACGGGAG+TGG | 0.556777 | 5.3:+3079167 | MS.gene22288:CDS |
GCATCACAGGTGGACGGAGT+AGG | 0.560009 | 5.3:+3079192 | MS.gene22288:CDS |
AGATGGTTCCAATACTTCAC+AGG | 0.562226 | 5.3:+3076625 | MS.gene22288:CDS |
TTGTGCTAGTCATTAGATGT+GGG | 0.569101 | 5.3:-3076447 | None:intergenic |
TCTACTTCATGCTCAAGGAC+GGG | 0.569738 | 5.3:-3076409 | None:intergenic |
TTTGATGGCTGCCATGCATG+AGG | 0.574951 | 5.3:+3078892 | MS.gene22288:CDS |
GTGTTGAAAGAGTTTGAAGA+AGG | 0.576656 | 5.3:+3074959 | MS.gene22288:CDS |
TCTCAGGATGTCACTAGAGT+CGG | 0.577140 | 5.3:+3077951 | MS.gene22288:CDS |
GTCGCTCTACTTCATGCTCA+AGG | 0.578601 | 5.3:-3076414 | None:intergenic |
TAGGTTGTCAATATGGAATG+GGG | 0.578992 | 5.3:+3077715 | MS.gene22288:intron |
ATGATATCAGGAATGTATCT+CGG | 0.579708 | 5.3:+3077907 | MS.gene22288:CDS |
TCATGCATGGCAGCCATCAA+AGG | 0.579757 | 5.3:-3078890 | None:intergenic |
TCATGCTCAAGGACGGGAGA+TGG | 0.579799 | 5.3:-3076403 | None:intergenic |
GCTGCAATAGTCATTGGTAC+TGG | 0.581228 | 5.3:+3077537 | MS.gene22288:CDS |
TGTTGGAAGGTTAAGGCAAG+TGG | 0.583503 | 5.3:+3074994 | MS.gene22288:CDS |
AAGATGGGAAGAGTGGTAGT+GGG | 0.588287 | 5.3:+3074839 | None:intergenic |
GTGGTGGCATCACAGGTGGA+CGG | 0.589673 | 5.3:+3079186 | MS.gene22288:CDS |
CACGCCGGTTTAGCTTCTGA+AGG | 0.591635 | 5.3:+3075040 | MS.gene22288:CDS |
TTGAAGAAGATTGGTCGTGA+CGG | 0.592268 | 5.3:+3079161 | MS.gene22288:CDS |
GTGACTAACCATATCTACAA+TGG | 0.594940 | 5.3:-3076738 | None:intergenic |
GTTAGGAAGATTATCAACAT+AGG | 0.595626 | 5.3:-3075089 | None:intergenic |
AGTGGTTGATGCTATGGCGG+TGG | 0.596296 | 5.3:+3075012 | MS.gene22288:CDS |
ATTGGTCGTGACGGGAGTGG+TGG | 0.597920 | 5.3:+3079170 | MS.gene22288:CDS |
GAAGGTTGTGATACGAGTGT+TGG | 0.604021 | 5.3:+3074977 | MS.gene22288:CDS |
GTTGTGATACGAGTGTTGGA+AGG | 0.610760 | 5.3:+3074981 | MS.gene22288:CDS |
GGGAGTGGTGGCATCACAGG+TGG | 0.611199 | 5.3:+3079182 | MS.gene22288:CDS |
ACAGTTGTGGCAATTGAAGG+AGG | 0.611717 | 5.3:+3079236 | MS.gene22288:CDS |
ACTGTTGGAACATTAGCTGT+TGG | 0.612811 | 5.3:+3077489 | MS.gene22288:CDS |
GTGCTAGTCATTAGATGTGG+GGG | 0.613432 | 5.3:-3076445 | None:intergenic |
AGGTTGTCAATATGGAATGG+GGG | 0.613620 | 5.3:+3077716 | MS.gene22288:intron |
AGGTGAATCATCCTCATGCA+TGG | 0.614958 | 5.3:-3078903 | None:intergenic |
TGTATCTCGGTGACATCGTG+AGG | 0.623745 | 5.3:+3077920 | MS.gene22288:CDS |
ATCGGTGAAGATGGGAAGAG+TGG | 0.624776 | 5.3:+3074832 | None:intergenic |
AAGAGTGGTAGTGGGAGTGA+CGG | 0.625333 | 5.3:+3074847 | MS.gene22288:CDS |
TCTAATGACTAGCACAAGCA+AGG | 0.627317 | 5.3:+3076453 | MS.gene22288:CDS |
CGAAGATGGATCAGGCATTG+GGG | 0.630238 | 5.3:+3079358 | MS.gene22288:CDS |
TCTTACAACATCAGGACGCA+TGG | 0.630747 | 5.3:+3077614 | MS.gene22288:CDS |
CAATACTTCACAGGACAGAA+GGG | 0.631867 | 5.3:+3076634 | MS.gene22288:CDS |
GATGCTATTATCAAGTGTCA+GGG | 0.635033 | 5.3:+3077588 | MS.gene22288:CDS |
GTGTGATGTGGTGACTCGAA+GGG | 0.640591 | 5.3:+3079103 | MS.gene22288:CDS |
TTACCTCAAAGGTGTCGTTG+AGG | 0.644762 | 5.3:-3078949 | None:intergenic |
ATGGCGGTGGAGATGCACGC+CGG | 0.645387 | 5.3:+3075025 | MS.gene22288:CDS |
CCACTTGATTAAAATGCCCG+AGG | 0.646430 | 5.3:-3076702 | None:intergenic |
TGTTGTGAAGGTGTGTGATG+TGG | 0.646930 | 5.3:+3079091 | MS.gene22288:CDS |
GGTAGTGGGAGTGACGGCGA+CGG | 0.652117 | 5.3:+3074853 | MS.gene22288:CDS |
TGTGTGATGTGGTGACTCGA+AGG | 0.656555 | 5.3:+3079102 | MS.gene22288:CDS |
TATTATGCGCTGCATCTTGG+GGG | 0.666308 | 5.3:+3076340 | MS.gene22288:CDS |
GGTACAAACCTCAGTACGAA+CGG | 0.676112 | 5.3:-3078009 | None:intergenic |
AGCTTTAAACGAAATATTGG+GGG | 0.680619 | 5.3:+3079301 | MS.gene22288:CDS |
TGTGCTAGTCATTAGATGTG+GGG | 0.691314 | 5.3:-3076446 | None:intergenic |
GCAAGTGGTTGATGCTATGG+CGG | 0.693157 | 5.3:+3075009 | MS.gene22288:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTTAGATATCTTAATT+TGG | + | chr5.3:3077366-3077385 | MS.gene22288:intron | 10.0% |
!! | AGTAATATAATGAAACAAAT+AGG | - | chr5.3:3077428-3077447 | None:intergenic | 15.0% |
!! | TAAATGATAATAGTTGTAAA+TGG | + | chr5.3:3077279-3077298 | MS.gene22288:intron | 15.0% |
!! | TTAATTCTATAATAGTGAAA+TGG | + | chr5.3:3077252-3077271 | MS.gene22288:intron | 15.0% |
!! | TTCAATGTCTAAAAAAATTA+AGG | - | chr5.3:3078324-3078343 | None:intergenic | 15.0% |
!!! | AAAAGTTTTTGTATAAAAGA+AGG | - | chr5.3:3077234-3077253 | None:intergenic | 15.0% |
!!! | AGTTCTTATTTTTCATTTTT+GGG | + | chr5.3:3077656-3077675 | MS.gene22288:intron | 15.0% |
!!! | GTTTTTTGATTTATTATGTT+TGG | + | chr5.3:3075235-3075254 | MS.gene22288:intron | 15.0% |
!!! | TCTTAATTGATCTTTAAAAT+TGG | + | chr5.3:3076768-3076787 | MS.gene22288:intron | 15.0% |
!! | AAAACCATATATCTTGTATT+TGG | + | chr5.3:3079027-3079046 | MS.gene22288:intron | 20.0% |
!! | AAACAAACCAATTTAACAAA+AGG | - | chr5.3:3076290-3076309 | None:intergenic | 20.0% |
!! | ACTATTAACTTAGTTAATGA+AGG | - | chr5.3:3078368-3078387 | None:intergenic | 20.0% |
!! | ATGTCTAAAAAAATTAAGGT+AGG | - | chr5.3:3078320-3078339 | None:intergenic | 20.0% |
!! | CTATTAACTTAGTTAATGAA+GGG | - | chr5.3:3078367-3078386 | None:intergenic | 20.0% |
!! | GAAAAACAAATCATACAATT+AGG | - | chr5.3:3077011-3077030 | None:intergenic | 20.0% |
!! | GATGTGTATATATATTTATC+TGG | + | chr5.3:3078280-3078299 | MS.gene22288:intron | 20.0% |
!! | TATATATTTATCTGGTGATT+TGG | + | chr5.3:3078288-3078307 | MS.gene22288:intron | 20.0% |
!! | TGTTCTGTTATTCAATAAAA+AGG | + | chr5.3:3078100-3078119 | MS.gene22288:intron | 20.0% |
!! | TTTAACGTTATTACATGAAA+AGG | - | chr5.3:3076539-3076558 | None:intergenic | 20.0% |
!!! | ATGTTTTTGATCTAAATGTA+AGG | + | chr5.3:3077166-3077185 | MS.gene22288:intron | 20.0% |
!!! | ATTTGTTATGACTAAAACTT+TGG | + | chr5.3:3077858-3077877 | MS.gene22288:intron | 20.0% |
!!! | CAGTTCTTATTTTTCATTTT+TGG | + | chr5.3:3077655-3077674 | MS.gene22288:intron | 20.0% |
!!! | GTCATTTTCTCAAATTTTAT+CGG | + | chr5.3:3075819-3075838 | MS.gene22288:intron | 20.0% |
!!! | TATATGGTTTTTAGATTTAC+AGG | - | chr5.3:3079018-3079037 | None:intergenic | 20.0% |
!!! | TTTTTGATTTCATTTTAAGC+AGG | + | chr5.3:3077458-3077477 | MS.gene22288:intron | 20.0% |
! | AAAAATGAAAAGAACAGTTG+TGG | + | chr5.3:3079223-3079242 | MS.gene22288:CDS | 25.0% |
! | AAACAGACATTTGTTTCATA+GGG | - | chr5.3:3076682-3076701 | None:intergenic | 25.0% |
! | AAAGAATTCATTGCTAAAGA+TGG | + | chr5.3:3076608-3076627 | MS.gene22288:CDS | 25.0% |
! | AACAAAAACATAGACAAAAC+TGG | - | chr5.3:3075295-3075314 | None:intergenic | 25.0% |
! | ACAAAAACATAGACAAAACT+GGG | - | chr5.3:3075294-3075313 | None:intergenic | 25.0% |
! | AGAAAAAAACAATCTGTTGA+AGG | - | chr5.3:3077135-3077154 | None:intergenic | 25.0% |
! | GGATTTGGACATTTAATAAA+TGG | + | chr5.3:3075495-3075514 | MS.gene22288:intron | 25.0% |
! | TATGTATTATACCTTAATCC+CGG | - | chr5.3:3077088-3077107 | None:intergenic | 25.0% |
! | TATTCAATAAAAAGGCAATC+TGG | + | chr5.3:3078108-3078127 | MS.gene22288:intron | 25.0% |
! | TGTTTATGGAAAATGTACTT+TGG | + | chr5.3:3075474-3075493 | MS.gene22288:intron | 25.0% |
! | TTCAATGTAATCATATGTGT+CGG | - | chr5.3:3075795-3075814 | None:intergenic | 25.0% |
!! | AATTGACTTTGCTATAAACT+TGG | + | chr5.3:3078556-3078575 | MS.gene22288:intron | 25.0% |
!! | ATTTTTCTTTTAGCACACAA+GGG | + | chr5.3:3078511-3078530 | MS.gene22288:intron | 25.0% |
!! | CAAAGAAAACCAAAGTTTTA+GGG | - | chr5.3:3076493-3076512 | None:intergenic | 25.0% |
!! | TATTTTTCTTTTAGCACACA+AGG | + | chr5.3:3078510-3078529 | MS.gene22288:intron | 25.0% |
!! | TTCTCAAATTTTATCGGTAT+GGG | + | chr5.3:3075825-3075844 | MS.gene22288:intron | 25.0% |
!! | TTTCTCAAATTTTATCGGTA+TGG | + | chr5.3:3075824-3075843 | MS.gene22288:intron | 25.0% |
!! | TTTTAATCAAGTGGACAAAA+GGG | + | chr5.3:3076711-3076730 | MS.gene22288:CDS | 25.0% |
!!! | AAGCTTTAAACGAAATATTG+GGG | + | chr5.3:3079300-3079319 | MS.gene22288:CDS | 25.0% |
!!! | ATTTTAATCAAGTGGACAAA+AGG | + | chr5.3:3076710-3076729 | MS.gene22288:CDS | 25.0% |
!!! | CAACAGATTGTTTTTTTCTA+GGG | + | chr5.3:3077136-3077155 | MS.gene22288:intron | 25.0% |
!!! | CATATTTTTTGTCCCTAAAT+GGG | + | chr5.3:3078985-3079004 | MS.gene22288:intron | 25.0% |
!!! | GAAGCTTTAAACGAAATATT+GGG | + | chr5.3:3079299-3079318 | MS.gene22288:CDS | 25.0% |
!!! | GAATTTATTTTCCGTCTTTT+AGG | + | chr5.3:3077696-3077715 | MS.gene22288:intron | 25.0% |
!!! | TATGTTGATAATCTTCCTAA+CGG | + | chr5.3:3075091-3075110 | MS.gene22288:CDS | 25.0% |
!!! | TCAACAGATTGTTTTTTTCT+AGG | + | chr5.3:3077135-3077154 | MS.gene22288:intron | 25.0% |
!!! | TGAAGCTTTAAACGAAATAT+TGG | + | chr5.3:3079298-3079317 | MS.gene22288:CDS | 25.0% |
!!! | TTACATGCTTTTTGAAATGT+TGG | + | chr5.3:3078624-3078643 | MS.gene22288:intron | 25.0% |
!!! | TTTTTTATCAGTACTGAGAA+AGG | + | chr5.3:3076313-3076332 | MS.gene22288:intron | 25.0% |
AAAAAAAGTGATTACCCGTT+AGG | - | chr5.3:3075109-3075128 | None:intergenic | 30.0% | |
AAAAAACAATCTGTTGAAGG+CGG | - | chr5.3:3077132-3077151 | None:intergenic | 30.0% | |
AAAACCAGAACAATTGAGTA+TGG | - | chr5.3:3078821-3078840 | None:intergenic | 30.0% | |
ACAGCCAAATACAAGATATA+TGG | - | chr5.3:3079034-3079053 | None:intergenic | 30.0% | |
ACCAAATCTTGCTAAAGATA+AGG | - | chr5.3:3076204-3076223 | None:intergenic | 30.0% | |
ACCAATTTAACAAAAGGACT+CGG | - | chr5.3:3076284-3076303 | None:intergenic | 30.0% | |
AGTCTATGACAGCTATTTAT+TGG | + | chr5.3:3076006-3076025 | MS.gene22288:intron | 30.0% | |
ATCAAAACAAGAAAAGCCAA+AGG | - | chr5.3:3078600-3078619 | None:intergenic | 30.0% | |
ATCAAGCAACAAAAGTCATT+AGG | - | chr5.3:3077833-3077852 | None:intergenic | 30.0% | |
ATCTTGGTTATACAAAGCAT+TGG | + | chr5.3:3078200-3078219 | MS.gene22288:intron | 30.0% | |
ATGATATCAGGAATGTATCT+CGG | + | chr5.3:3077907-3077926 | MS.gene22288:CDS | 30.0% | |
ATTGAATAACAGAACACATC+TGG | - | chr5.3:3078096-3078115 | None:intergenic | 30.0% | |
CAAATCATACAATTAGGCTA+AGG | - | chr5.3:3077005-3077024 | None:intergenic | 30.0% | |
CATATTGACAACCTAAAAGA+CGG | - | chr5.3:3077710-3077729 | None:intergenic | 30.0% | |
CCATTTAGGGACAAAAAATA+TGG | - | chr5.3:3078987-3079006 | None:intergenic | 30.0% | |
GAAACAGACATTTGTTTCAT+AGG | - | chr5.3:3076683-3076702 | None:intergenic | 30.0% | |
GCTGATAAGATATATTTCCT+TGG | + | chr5.3:3078781-3078800 | MS.gene22288:intron | 30.0% | |
GGAAAACATACTTGATACTA+TGG | + | chr5.3:3078070-3078089 | MS.gene22288:intron | 30.0% | |
GTCTATGACAGCTATTTATT+GGG | + | chr5.3:3076007-3076026 | MS.gene22288:intron | 30.0% | |
GTGTACATAGAATAGAATAC+AGG | - | chr5.3:3078676-3078695 | None:intergenic | 30.0% | |
GTTAGGAAGATTATCAACAT+AGG | - | chr5.3:3075092-3075111 | None:intergenic | 30.0% | |
TAACCTGATCATTTGGATTA+GGG | - | chr5.3:3077801-3077820 | None:intergenic | 30.0% | |
TATGTATGACCAATGTCTTT+AGG | + | chr5.3:3078049-3078068 | MS.gene22288:intron | 30.0% | |
TATGTTTCATGCACTACAAT+TGG | - | chr5.3:3078419-3078438 | None:intergenic | 30.0% | |
TCCTTATCTTTAGCAAGATT+TGG | + | chr5.3:3076200-3076219 | MS.gene22288:intron | 30.0% | |
TGATCAAAACCCTAAAACTT+TGG | + | chr5.3:3076481-3076500 | MS.gene22288:intron | 30.0% | |
TGATTGATAGATTGTGTGTT+TGG | + | chr5.3:3075941-3075960 | MS.gene22288:intron | 30.0% | |
TGGAAAATGTACTTTGGATT+TGG | + | chr5.3:3075480-3075499 | MS.gene22288:intron | 30.0% | |
TTGATAGATTGTGTTTGGAT+TGG | + | chr5.3:3075596-3075615 | MS.gene22288:intron | 30.0% | |
! | AAATTGAATTTTATGCTCGC+AGG | + | chr5.3:3076556-3076575 | MS.gene22288:intron | 30.0% |
! | ACAATTTTTCTTGCCTTCAA+TGG | - | chr5.3:3079074-3079093 | None:intergenic | 30.0% |
! | ACCTATTGTTGTTCTATTGT+AGG | + | chr5.3:3078170-3078189 | MS.gene22288:intron | 30.0% |
! | GACTAAAACTTTGGTGATTT+GGG | + | chr5.3:3077867-3077886 | MS.gene22288:intron | 30.0% |
! | GCAAAGAAAACCAAAGTTTT+AGG | - | chr5.3:3076494-3076513 | None:intergenic | 30.0% |
! | GCTTGTTTGGTAACTATTTA+TGG | - | chr5.3:3076812-3076831 | None:intergenic | 30.0% |
! | GTATGTTTTCCTAAAGACAT+TGG | - | chr5.3:3078061-3078080 | None:intergenic | 30.0% |
! | TAATTTGCAAGCTGTAAGAA+TGG | + | chr5.3:3075573-3075592 | MS.gene22288:intron | 30.0% |
! | TGACTAAAACTTTGGTGATT+TGG | + | chr5.3:3077866-3077885 | MS.gene22288:intron | 30.0% |
! | TTAGGTTGTCAATATGGAAT+GGG | + | chr5.3:3077714-3077733 | MS.gene22288:intron | 30.0% |
! | TTTTTCTTTTAGCACACAAG+GGG | + | chr5.3:3078512-3078531 | MS.gene22288:intron | 30.0% |
!! | AATGGTTGATAGATTGTGTT+TGG | + | chr5.3:3075591-3075610 | MS.gene22288:intron | 30.0% |
!! | AATTTGGTGTGAAGGAAAAT+GGG | + | chr5.3:3077382-3077401 | MS.gene22288:intron | 30.0% |
!! | AGCTTTAAACGAAATATTGG+GGG | + | chr5.3:3079301-3079320 | MS.gene22288:CDS | 30.0% |
!! | ATGTTGATAATCTTCCTAAC+GGG | + | chr5.3:3075092-3075111 | MS.gene22288:CDS | 30.0% |
!! | GATATCTTAATTTGGTGTGA+AGG | + | chr5.3:3077374-3077393 | MS.gene22288:intron | 30.0% |
!! | GTTATACAAAGCATTGGAAA+AGG | + | chr5.3:3078206-3078225 | MS.gene22288:intron | 30.0% |
!! | TAATTTGGTGTGAAGGAAAA+TGG | + | chr5.3:3077381-3077400 | MS.gene22288:intron | 30.0% |
!! | TATTGTAGGCAGTTTTATCT+TGG | + | chr5.3:3078184-3078203 | MS.gene22288:intron | 30.0% |
!! | TGGTTTTTAGATTTACAGGA+AGG | - | chr5.3:3079014-3079033 | None:intergenic | 30.0% |
!! | TTTAGGTTGTCAATATGGAA+TGG | + | chr5.3:3077713-3077732 | MS.gene22288:intron | 30.0% |
!!! | ATTGTGTTTGGATTGGTTTT+GGG | + | chr5.3:3075603-3075622 | MS.gene22288:intron | 30.0% |
!!! | CCATATTTTTTGTCCCTAAA+TGG | + | chr5.3:3078984-3079003 | MS.gene22288:intron | 30.0% |
!!! | GGTTTTGAGAAAATGATATC+AGG | + | chr5.3:3077895-3077914 | MS.gene22288:CDS | 30.0% |
AAACAAATGTCTGTTTCCTC+GGG | + | chr5.3:3076686-3076705 | MS.gene22288:CDS | 35.0% | |
AAACATAGACAAAACTGGGA+AGG | - | chr5.3:3075290-3075309 | None:intergenic | 35.0% | |
AAACCAAGTGCAACTTGAAT+AGG | - | chr5.3:3076843-3076862 | None:intergenic | 35.0% | |
AACCTGACAACAAATAGCTT+TGG | - | chr5.3:3076895-3076914 | None:intergenic | 35.0% | |
AAGCAGGTTAATGATACTGT+TGG | + | chr5.3:3077474-3077493 | MS.gene22288:intron | 35.0% | |
AAGCATCTCTTATGTGTCTA+GGG | + | chr5.3:3078138-3078157 | MS.gene22288:intron | 35.0% | |
ACCTGACAACAAATAGCTTT+GGG | - | chr5.3:3076894-3076913 | None:intergenic | 35.0% | |
AGACATTTGTTTCATAGGGA+AGG | - | chr5.3:3076678-3076697 | None:intergenic | 35.0% | |
AGTAGCATATACAAATCCAC+CGG | - | chr5.3:3076154-3076173 | None:intergenic | 35.0% | |
ATAGGACATACATGCTTGTT+TGG | - | chr5.3:3076825-3076844 | None:intergenic | 35.0% | |
ATGACAGCTATTTATTGGGA+TGG | + | chr5.3:3076011-3076030 | MS.gene22288:intron | 35.0% | |
ATTCTTAATGTCACCGAAGA+TGG | + | chr5.3:3079344-3079363 | MS.gene22288:CDS | 35.0% | |
CATACAATTAGGCTAAGGAA+AGG | - | chr5.3:3077000-3077019 | None:intergenic | 35.0% | |
CATAGTGTATGACTGAGAAT+CGG | - | chr5.3:3078033-3078052 | None:intergenic | 35.0% | |
CTAACCTGATCATTTGGATT+AGG | - | chr5.3:3077802-3077821 | None:intergenic | 35.0% | |
CTAATCCAAATGATCAGGTT+AGG | + | chr5.3:3077800-3077819 | MS.gene22288:intron | 35.0% | |
CTTTCTTTCATATCCTCTTG+TGG | + | chr5.3:3078461-3078480 | MS.gene22288:intron | 35.0% | |
GAAACAAATGTCTGTTTCCT+CGG | + | chr5.3:3076685-3076704 | MS.gene22288:CDS | 35.0% | |
GATAGATTGTGTGTTTGGAT+TGG | + | chr5.3:3075946-3075965 | MS.gene22288:intron | 35.0% | |
GATGCTATTATCAAGTGTCA+GGG | + | chr5.3:3077588-3077607 | MS.gene22288:CDS | 35.0% | |
GCAATGAAAAACACCTAACA+TGG | - | chr5.3:3075389-3075408 | None:intergenic | 35.0% | |
GCCTACAATAGAACAACAAT+AGG | - | chr5.3:3078174-3078193 | None:intergenic | 35.0% | |
GGCAAGAAAAATTGTTGTGA+AGG | + | chr5.3:3079079-3079098 | MS.gene22288:CDS | 35.0% | |
GTCTGACTTATTTACCTCAA+AGG | - | chr5.3:3078963-3078982 | None:intergenic | 35.0% | |
GTGACTAACCATATCTACAA+TGG | - | chr5.3:3076741-3076760 | None:intergenic | 35.0% | |
GTGTTGAAAGAGTTTGAAGA+AGG | + | chr5.3:3074959-3074978 | MS.gene22288:CDS | 35.0% | |
GTTGAAAGCTTCGAAGAAAT+AGG | - | chr5.3:3077988-3078007 | None:intergenic | 35.0% | |
GTTGTCTATTTCATGCTTTC+TGG | + | chr5.3:3075359-3075378 | MS.gene22288:intron | 35.0% | |
TAGGTTGTCAATATGGAATG+GGG | + | chr5.3:3077715-3077734 | MS.gene22288:intron | 35.0% | |
TCAATGTCATACTGTGTTCT+TGG | - | chr5.3:3077763-3077782 | None:intergenic | 35.0% | |
TGACAGCTATTTATTGGGAT+GGG | + | chr5.3:3076012-3076031 | MS.gene22288:intron | 35.0% | |
TGATGCTATTATCAAGTGTC+AGG | + | chr5.3:3077587-3077606 | MS.gene22288:CDS | 35.0% | |
TGGAACATTGTAGTTATCCA+AGG | - | chr5.3:3078801-3078820 | None:intergenic | 35.0% | |
TGTTCCATACTCAATTGTTC+TGG | + | chr5.3:3078814-3078833 | MS.gene22288:intron | 35.0% | |
TTACATATGACAACTGCCTT+TGG | + | chr5.3:3078581-3078600 | MS.gene22288:intron | 35.0% | |
TTGCCTTATACTTACACAAC+CGG | + | chr5.3:3077066-3077085 | MS.gene22288:intron | 35.0% | |
TTGCTTTCAGAGGGAAATAT+TGG | - | chr5.3:3077043-3077062 | None:intergenic | 35.0% | |
TTGTAGTGCATGAAACATAG+TGG | + | chr5.3:3078420-3078439 | MS.gene22288:intron | 35.0% | |
TTGTGCTAGTCATTAGATGT+GGG | - | chr5.3:3076450-3076469 | None:intergenic | 35.0% | |
! | AAAGCATCTCTTATGTGTCT+AGG | + | chr5.3:3078137-3078156 | MS.gene22288:intron | 35.0% |
! | ACCGAGTCCTTTTGTTAAAT+TGG | + | chr5.3:3076280-3076299 | MS.gene22288:intron | 35.0% |
! | AGGGTTTTCCATTGTAGATA+TGG | + | chr5.3:3076730-3076749 | MS.gene22288:CDS | 35.0% |
! | AGGTGATTCATGATTTGTGT+CGG | + | chr5.3:3075887-3075906 | MS.gene22288:intron | 35.0% |
! | ATCTTGGGGGAACAAATTTT+AGG | + | chr5.3:3076353-3076372 | MS.gene22288:CDS | 35.0% |
! | TCTGAAACTCTTGTCATTTC+AGG | + | chr5.3:3078864-3078883 | MS.gene22288:intron | 35.0% |
! | TCTTGGGGGAACAAATTTTA+GGG | + | chr5.3:3076354-3076373 | MS.gene22288:CDS | 35.0% |
!! | AAAGCTATTTGTTGTCAGGT+TGG | + | chr5.3:3076894-3076913 | MS.gene22288:intron | 35.0% |
!! | GTTCAACAGTGTCATTTCAA+CGG | + | chr5.3:3075257-3075276 | MS.gene22288:intron | 35.0% |
!!! | AACAAATTTTAGGGTAACGC+GGG | + | chr5.3:3076363-3076382 | MS.gene22288:CDS | 35.0% |
!!! | ATGCACAGTTTGTTTTTTCC+TGG | + | chr5.3:3078717-3078736 | MS.gene22288:intron | 35.0% |
!!! | CGTCTTTTAGGTTGTCAATA+TGG | + | chr5.3:3077708-3077727 | MS.gene22288:intron | 35.0% |
!!! | GAACAAATTTTAGGGTAACG+CGG | + | chr5.3:3076362-3076381 | MS.gene22288:CDS | 35.0% |
!!! | GATTGTGTTTGGATTGGTTT+TGG | + | chr5.3:3075602-3075621 | MS.gene22288:intron | 35.0% |
!!! | GTTTTTTCCTGGAGTATTTG+AGG | + | chr5.3:3078728-3078747 | MS.gene22288:intron | 35.0% |
AAGCCCTAATCCAAATGATC+AGG | + | chr5.3:3077795-3077814 | MS.gene22288:CDS | 40.0% | |
AATGCCAACCAGTAAATAGC+TGG | - | chr5.3:3075669-3075688 | None:intergenic | 40.0% | |
ACTAGATCTGCCAATCAAGA+AGG | + | chr5.3:3076123-3076142 | MS.gene22288:intron | 40.0% | |
ACTGTTGCTGCAATAGTCAT+TGG | + | chr5.3:3077531-3077550 | MS.gene22288:CDS | 40.0% | |
ACTGTTGGAACATTAGCTGT+TGG | + | chr5.3:3077489-3077508 | MS.gene22288:CDS | 40.0% | |
AGAACAGTTGTGGCAATTGA+AGG | + | chr5.3:3079233-3079252 | MS.gene22288:CDS | 40.0% | |
AGATGGTTCCAATACTTCAC+AGG | + | chr5.3:3076625-3076644 | MS.gene22288:CDS | 40.0% | |
AGGAAAGGAATTCCTTACCA+AGG | - | chr5.3:3076985-3077004 | None:intergenic | 40.0% | |
AGGTTGTCAATATGGAATGG+GGG | + | chr5.3:3077716-3077735 | MS.gene22288:intron | 40.0% | |
AGTCTATGCCAGCTATTTAC+TGG | + | chr5.3:3075658-3075677 | MS.gene22288:intron | 40.0% | |
ATATTATGCGCTGCATCTTG+GGG | + | chr5.3:3076339-3076358 | MS.gene22288:CDS | 40.0% | |
ATCCCGGTTGTGTAAGTATA+AGG | - | chr5.3:3077072-3077091 | None:intergenic | 40.0% | |
CAATAAAAAGGCAATCTGGC+AGG | + | chr5.3:3078112-3078131 | MS.gene22288:intron | 40.0% | |
CAATACTTCACAGGACAGAA+GGG | + | chr5.3:3076634-3076653 | MS.gene22288:CDS | 40.0% | |
CAGAACCTAACCTGATCATT+TGG | - | chr5.3:3077808-3077827 | None:intergenic | 40.0% | |
CATATTATGCGCTGCATCTT+GGG | + | chr5.3:3076338-3076357 | MS.gene22288:CDS | 40.0% | |
CATGAATCACCTATGAAGCA+TGG | - | chr5.3:3075879-3075898 | None:intergenic | 40.0% | |
CTGTTGGAACATTAGCTGTT+GGG | + | chr5.3:3077490-3077509 | MS.gene22288:CDS | 40.0% | |
CTTGCTAAAGATAAGGAGTG+CGG | - | chr5.3:3076197-3076216 | None:intergenic | 40.0% | |
CTTGTGCTAGTCATTAGATG+TGG | - | chr5.3:3076451-3076470 | None:intergenic | 40.0% | |
GAGTGAAGAGTAGAAGAAAG+TGG | + | chr5.3:3074921-3074940 | MS.gene22288:CDS | 40.0% | |
GATTCCAGATCTTCCATTGA+AGG | + | chr5.3:3079058-3079077 | MS.gene22288:intron | 40.0% | |
GTAGCATATACAAATCCACC+GGG | - | chr5.3:3076153-3076172 | None:intergenic | 40.0% | |
GTTGGCATCTTGAAGAAGAT+TGG | + | chr5.3:3079152-3079171 | MS.gene22288:CDS | 40.0% | |
TACTTACACAACCGGGATTA+AGG | + | chr5.3:3077074-3077093 | MS.gene22288:intron | 40.0% | |
TATGCCAGCTATTTACTGGT+TGG | + | chr5.3:3075662-3075681 | MS.gene22288:intron | 40.0% | |
TCACTAGAGTCGGATATGTT+TGG | + | chr5.3:3077961-3077980 | MS.gene22288:CDS | 40.0% | |
TCATTTCAGGACTCCTTTGA+TGG | + | chr5.3:3078877-3078896 | MS.gene22288:intron | 40.0% | |
TCTAATGACTAGCACAAGCA+AGG | + | chr5.3:3076453-3076472 | MS.gene22288:CDS | 40.0% | |
TCTCTTATGTGTCTAGGGAA+AGG | + | chr5.3:3078143-3078162 | MS.gene22288:intron | 40.0% | |
TGAACTGACATAGTGACACA+TGG | - | chr5.3:3075634-3075653 | None:intergenic | 40.0% | |
TGCCTTATACTTACACAACC+GGG | + | chr5.3:3077067-3077086 | MS.gene22288:intron | 40.0% | |
TGTGCTAGTCATTAGATGTG+GGG | - | chr5.3:3076449-3076468 | None:intergenic | 40.0% | |
! | AGTCGTCTTATTACCACAAG+AGG | - | chr5.3:3078477-3078496 | None:intergenic | 40.0% |
! | ATATGGAATGGGGGAACTTT+TGG | + | chr5.3:3077725-3077744 | MS.gene22288:CDS | 40.0% |
! | CAGCCTATGCATCATTTTCA+CGG | - | chr5.3:3078765-3078784 | None:intergenic | 40.0% |
! | CTTAGTTAATGAAGGGCGTA+TGG | - | chr5.3:3078360-3078379 | None:intergenic | 40.0% |
! | CTTGCTACTTCTATCAAGTC+AGG | - | chr5.3:3078926-3078945 | None:intergenic | 40.0% |
! | TTGAAGAAGATTGGTCGTGA+CGG | + | chr5.3:3079161-3079180 | MS.gene22288:CDS | 40.0% |
!! | ACCCAAAGCTATTTGTTGTC+AGG | + | chr5.3:3076890-3076909 | MS.gene22288:intron | 40.0% |
!! | ATACGAGTGTTGGAAGGTTA+AGG | + | chr5.3:3074987-3075006 | MS.gene22288:CDS | 40.0% |
!! | CAGGAAGCATTTGCACAAAA+TGG | + | chr5.3:3076939-3076958 | MS.gene22288:CDS | 40.0% |
!! | TCACTTTTCGCAAAGCAAAC+CGG | - | chr5.3:3075731-3075750 | None:intergenic | 40.0% |
!! | TGTCCTATTCAAGTTGCACT+TGG | + | chr5.3:3076837-3076856 | MS.gene22288:intron | 40.0% |
!! | TGTGTGTTTGGATTGGTGTT+GGG | + | chr5.3:3075953-3075972 | MS.gene22288:intron | 40.0% |
!! | TTGTGTGTTTGGATTGGTGT+TGG | + | chr5.3:3075952-3075971 | MS.gene22288:intron | 40.0% |
AATCCTCAACGACACCTTTG+AGG | + | chr5.3:3078946-3078965 | MS.gene22288:CDS | 45.0% | |
AATGTCACCGAAGATGGATC+AGG | + | chr5.3:3079350-3079369 | MS.gene22288:CDS | 45.0% | |
ACAGGAAGGACACCCATTTA+GGG | - | chr5.3:3079000-3079019 | None:intergenic | 45.0% | |
ACAGTTGTGGCAATTGAAGG+AGG | + | chr5.3:3079236-3079255 | MS.gene22288:CDS | 45.0% | |
ACCACCTTCAGAAGCTAAAC+CGG | - | chr5.3:3075047-3075066 | None:intergenic | 45.0% | |
ACTATTGCAGCAACAGTGTC+TGG | - | chr5.3:3077528-3077547 | None:intergenic | 45.0% | |
AGATGTTGCAGCATGTTTGC+AGG | + | chr5.3:3076920-3076939 | MS.gene22288:CDS | 45.0% | |
AGGTGAATCATCCTCATGCA+TGG | - | chr5.3:3078906-3078925 | None:intergenic | 45.0% | |
ATCAATTCGCTCCAAGTAGC+AGG | - | chr5.3:3077571-3077590 | None:intergenic | 45.0% | |
CAGCTAGAACCAACAATGCA+TGG | - | chr5.3:3076072-3076091 | None:intergenic | 45.0% | |
CAGGGTCTTCTTACAACATC+AGG | + | chr5.3:3077606-3077625 | MS.gene22288:CDS | 45.0% | |
CATGTCACCTCAAATACTCC+AGG | - | chr5.3:3078738-3078757 | None:intergenic | 45.0% | |
CCAAGATGCAGCGCATAATA+TGG | - | chr5.3:3076340-3076359 | None:intergenic | 45.0% | |
CCAATACTTCACAGGACAGA+AGG | + | chr5.3:3076633-3076652 | MS.gene22288:CDS | 45.0% | |
CCACTTGATTAAAATGCCCG+AGG | - | chr5.3:3076705-3076724 | None:intergenic | 45.0% | |
CCATATTATGCGCTGCATCT+TGG | + | chr5.3:3076337-3076356 | MS.gene22288:CDS | 45.0% | |
CCTTCTGTCCTGTGAAGTAT+TGG | - | chr5.3:3076636-3076655 | None:intergenic | 45.0% | |
CTCTACTTCATGCTCAAGGA+CGG | - | chr5.3:3076413-3076432 | None:intergenic | 45.0% | |
CTTGCCTTCAATGGAAGATC+TGG | - | chr5.3:3079065-3079084 | None:intergenic | 45.0% | |
GAAGGTTGTGATACGAGTGT+TGG | + | chr5.3:3074977-3074996 | MS.gene22288:CDS | 45.0% | |
GCTCCGTGAAAATGATGCAT+AGG | + | chr5.3:3078759-3078778 | MS.gene22288:intron | 45.0% | |
GCTGCAATAGTCATTGGTAC+TGG | + | chr5.3:3077537-3077556 | MS.gene22288:CDS | 45.0% | |
GGACTCGAACATTTGTTTGC+TGG | + | chr5.3:3078645-3078664 | MS.gene22288:intron | 45.0% | |
GGTACAAACCTCAGTACGAA+CGG | - | chr5.3:3078012-3078031 | None:intergenic | 45.0% | |
GGTTGGCATTTAACACGCTA+AGG | + | chr5.3:3075679-3075698 | MS.gene22288:intron | 45.0% | |
GTAACGCGGGTTCATTTAAG+TGG | + | chr5.3:3076376-3076395 | MS.gene22288:CDS | 45.0% | |
GTCATTAGATGTGGGGGAAT+AGG | - | chr5.3:3076442-3076461 | None:intergenic | 45.0% | |
GTGCTAGTCATTAGATGTGG+GGG | - | chr5.3:3076448-3076467 | None:intergenic | 45.0% | |
TACAGGAAGGACACCCATTT+AGG | - | chr5.3:3079001-3079020 | None:intergenic | 45.0% | |
TATTATGCGCTGCATCTTGG+GGG | + | chr5.3:3076340-3076359 | MS.gene22288:CDS | 45.0% | |
TCTACTTCATGCTCAAGGAC+GGG | - | chr5.3:3076412-3076431 | None:intergenic | 45.0% | |
TCTCAGGATGTCACTAGAGT+CGG | + | chr5.3:3077951-3077970 | MS.gene22288:CDS | 45.0% | |
TCTTACAACATCAGGACGCA+TGG | + | chr5.3:3077614-3077633 | MS.gene22288:CDS | 45.0% | |
TGGTACTAATGCCTGCTACT+TGG | + | chr5.3:3077557-3077576 | MS.gene22288:CDS | 45.0% | |
TGTTGGAAGGTTAAGGCAAG+TGG | + | chr5.3:3074994-3075013 | MS.gene22288:CDS | 45.0% | |
TTAGCAGCTGCTGGTATTGT+TGG | + | chr5.3:3079134-3079153 | MS.gene22288:CDS | 45.0% | |
TTTGCGAAAAGTGATGCGCT+CGG | + | chr5.3:3075737-3075756 | MS.gene22288:intron | 45.0% | |
! | AACTTTGGTGATTTGGGTGC+AGG | + | chr5.3:3077873-3077892 | MS.gene22288:intron | 45.0% |
! | AAGGCAAGCATTGCTTTCAG+AGG | - | chr5.3:3077053-3077072 | None:intergenic | 45.0% |
! | AAGGCAAGTGGTTGATGCTA+TGG | + | chr5.3:3075006-3075025 | MS.gene22288:CDS | 45.0% |
! | ACTTTGGTGATTTGGGTGCA+GGG | + | chr5.3:3077874-3077893 | MS.gene22288:intron | 45.0% |
! | AGGCAAGCATTGCTTTCAGA+GGG | - | chr5.3:3077052-3077071 | None:intergenic | 45.0% |
! | TGAAGAAGATTGGTCGTGAC+GGG | + | chr5.3:3079162-3079181 | MS.gene22288:CDS | 45.0% |
! | TGTTGTGAAGGTGTGTGATG+TGG | + | chr5.3:3079091-3079110 | MS.gene22288:CDS | 45.0% |
!! | CCTCGGGCATTTTAATCAAG+TGG | + | chr5.3:3076702-3076721 | MS.gene22288:CDS | 45.0% |
!! | GCTTTCTGGAGTACCATGTT+AGG | + | chr5.3:3075373-3075392 | MS.gene22288:intron | 45.0% |
!! | GTTGTGATACGAGTGTTGGA+AGG | + | chr5.3:3074981-3075000 | MS.gene22288:CDS | 45.0% |
!! | TTACCTCAAAGGTGTCGTTG+AGG | - | chr5.3:3078952-3078971 | None:intergenic | 45.0% |
!!! | GTTTGGATTGGTTTTGGGAG+AGG | + | chr5.3:3075608-3075627 | MS.gene22288:intron | 45.0% |
!! | ATAAAAATTAGAAATTTAAA+CGG | - | chr5.3:3075325-3075344 | None:intergenic | 5.0% |
!!! | TTTTATTTAAATTTTGTTTA+TGG | + | chr5.3:3075460-3075479 | MS.gene22288:intron | 5.0% |
AATCAAGAAGGTTCACCCGG+TGG | + | chr5.3:3076135-3076154 | MS.gene22288:intron | 50.0% | |
ACATAGATGTGCCTGTTGGC+CGG | + | chr5.3:3075709-3075728 | MS.gene22288:intron | 50.0% | |
ACCGAAGATGGATCAGGCAT+TGG | + | chr5.3:3079356-3079375 | MS.gene22288:CDS | 50.0% | |
ACCGGGTGAACCTTCTTGAT+TGG | - | chr5.3:3076136-3076155 | None:intergenic | 50.0% | |
ACGCACATAGATGTGCCTGT+TGG | + | chr5.3:3075705-3075724 | MS.gene22288:intron | 50.0% | |
AGATGTGCATGTAGCTGCCT+TGG | + | chr5.3:3076965-3076984 | MS.gene22288:CDS | 50.0% | |
AGGCAGCTACATGCACATCT+AGG | - | chr5.3:3076965-3076984 | None:intergenic | 50.0% | |
ATGAAGCATGGACTCAGACG+CGG | - | chr5.3:3075867-3075886 | None:intergenic | 50.0% | |
CCCAATGCCTGATCCATCTT+CGG | - | chr5.3:3079360-3079379 | None:intergenic | 50.0% | |
CCGAAGATGGATCAGGCATT+GGG | + | chr5.3:3079357-3079376 | MS.gene22288:CDS | 50.0% | |
CGTCTGAGTCCATGCTTCAT+AGG | + | chr5.3:3075867-3075886 | MS.gene22288:intron | 50.0% | |
GCCAATCAAGAAGGTTCACC+CGG | + | chr5.3:3076132-3076151 | MS.gene22288:intron | 50.0% | |
GGATGGGATTTAACGCGCTA+CGG | + | chr5.3:3076028-3076047 | MS.gene22288:intron | 50.0% | |
GTCGCTCTACTTCATGCTCA+AGG | - | chr5.3:3076417-3076436 | None:intergenic | 50.0% | |
GTGTGATGTGGTGACTCGAA+GGG | + | chr5.3:3079103-3079122 | MS.gene22288:CDS | 50.0% | |
TCACAGGACAGAAGGGAACT+TGG | + | chr5.3:3076641-3076660 | MS.gene22288:CDS | 50.0% | |
TCATGCATGGCAGCCATCAA+AGG | - | chr5.3:3078893-3078912 | None:intergenic | 50.0% | |
TCGTGAGGAGAGTCATTCTC+AGG | + | chr5.3:3077935-3077954 | MS.gene22288:CDS | 50.0% | |
TGCATGTAGCTGCCTTGGTA+AGG | + | chr5.3:3076970-3076989 | MS.gene22288:intron | 50.0% | |
TGTATCTCGGTGACATCGTG+AGG | + | chr5.3:3077920-3077939 | MS.gene22288:CDS | 50.0% | |
TGTGTGATGTGGTGACTCGA+AGG | + | chr5.3:3079102-3079121 | MS.gene22288:CDS | 50.0% | |
TTTCAACGCCGTTCGTACTG+AGG | + | chr5.3:3078001-3078020 | MS.gene22288:CDS | 50.0% | |
! | CGAAGATGGATCAGGCATTG+GGG | + | chr5.3:3079358-3079377 | MS.gene22288:CDS | 50.0% |
! | GCAAGTGGTTGATGCTATGG+CGG | + | chr5.3:3075009-3075028 | MS.gene22288:CDS | 50.0% |
! | TTTGATGGCTGCCATGCATG+AGG | + | chr5.3:3078892-3078911 | MS.gene22288:CDS | 50.0% |
!! | AAGAGTGGTAGTGGGAGTGA+CGG | + | chr5.3:3074847-3074866 | MS.gene22288:CDS | 50.0% |
ACAATGCATGGCGCGTCTGT+TGG | - | chr5.3:3076060-3076079 | None:intergenic | 55.0% | |
ACAGACGCGCCATGCATTGT+TGG | + | chr5.3:3076060-3076079 | MS.gene22288:intron | 55.0% | |
TCATGCTCAAGGACGGGAGA+TGG | - | chr5.3:3076406-3076425 | None:intergenic | 55.0% | |
! | AAGATTGGTCGTGACGGGAG+TGG | + | chr5.3:3079167-3079186 | MS.gene22288:CDS | 55.0% |
! | AGTGGTTGATGCTATGGCGG+TGG | + | chr5.3:3075012-3075031 | MS.gene22288:CDS | 55.0% |
! | GCCGGTTTAGCTTCTGAAGG+TGG | + | chr5.3:3075043-3075062 | MS.gene22288:CDS | 55.0% |
!! | CACGCCGGTTTAGCTTCTGA+AGG | + | chr5.3:3075040-3075059 | MS.gene22288:CDS | 55.0% |
!! | TCGGTGTCATGTCGTGTTGC+CGG | - | chr5.3:3075776-3075795 | None:intergenic | 55.0% |
CGCAAAGCAAACCGGCCAAC+AGG | - | chr5.3:3075723-3075742 | None:intergenic | 60.0% | |
GCATCACAGGTGGACGGAGT+AGG | + | chr5.3:3079192-3079211 | MS.gene22288:CDS | 60.0% | |
GCTCGGATACGTGTCGTGTC+CGG | + | chr5.3:3075754-3075773 | MS.gene22288:intron | 60.0% | |
GCTGCTCGATTAGCAGCTGC+TGG | + | chr5.3:3079125-3079144 | MS.gene22288:CDS | 60.0% | |
GTGGTGGCATCACAGGTGGA+CGG | + | chr5.3:3079186-3079205 | MS.gene22288:CDS | 60.0% | |
! | ATTGGTCGTGACGGGAGTGG+TGG | + | chr5.3:3079170-3079189 | MS.gene22288:CDS | 60.0% |
ATGGCGGTGGAGATGCACGC+CGG | + | chr5.3:3075025-3075044 | MS.gene22288:CDS | 65.0% | |
GACGGGAGTGGTGGCATCAC+AGG | + | chr5.3:3079179-3079198 | MS.gene22288:CDS | 65.0% | |
GGGAGTGGTGGCATCACAGG+TGG | + | chr5.3:3079182-3079201 | MS.gene22288:CDS | 65.0% | |
!! | GGTAGTGGGAGTGACGGCGA+CGG | + | chr5.3:3074853-3074872 | MS.gene22288:CDS | 65.0% |
AGTGGGAGTGACGGCGACGG+TGG | + | chr5.3:3074856-3074875 | MS.gene22288:CDS | 70.0% | |
GGGAGTGACGGCGACGGTGG+CGG | + | chr5.3:3074859-3074878 | MS.gene22288:CDS | 75.0% | |
! | AGTGACGGCGACGGTGGCGG+TGG | + | chr5.3:3074862-3074881 | MS.gene22288:CDS | 75.0% |
!! | GACGGCGACGGTGGCGGTGG+CGG | + | chr5.3:3074865-3074884 | MS.gene22288:CDS | 80.0% |
!! | GGTGGCGGCGTGTGCGGTGG+CGG | + | chr5.3:3074880-3074899 | MS.gene22288:CDS | 80.0% |
!! | GGTGGCGGTGGCGGCGTGTG+CGG | + | chr5.3:3074874-3074893 | MS.gene22288:CDS | 80.0% |
!! | GGCGGTGGCGGCGTGTGCGG+TGG | + | chr5.3:3074877-3074896 | MS.gene22288:CDS | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 3074842 | 3079409 | 3074842 | ID=MS.gene22288 |
chr5.3 | mRNA | 3074842 | 3079409 | 3074842 | ID=MS.gene22288.t1;Parent=MS.gene22288 |
chr5.3 | exon | 3074842 | 3075113 | 3074842 | ID=MS.gene22288.t1.exon1;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3074842 | 3075113 | 3074842 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
chr5.3 | exon | 3076324 | 3076474 | 3076324 | ID=MS.gene22288.t1.exon2;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3076324 | 3076474 | 3076324 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
chr5.3 | exon | 3076578 | 3076751 | 3076578 | ID=MS.gene22288.t1.exon3;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3076578 | 3076751 | 3076578 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
chr5.3 | exon | 3076912 | 3076986 | 3076912 | ID=MS.gene22288.t1.exon4;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3076912 | 3076986 | 3076912 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
chr5.3 | exon | 3077480 | 3077635 | 3077480 | ID=MS.gene22288.t1.exon5;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3077480 | 3077635 | 3077480 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
chr5.3 | exon | 3077718 | 3077816 | 3077718 | ID=MS.gene22288.t1.exon6;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3077718 | 3077816 | 3077718 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
chr5.3 | exon | 3077895 | 3078022 | 3077895 | ID=MS.gene22288.t1.exon7;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3077895 | 3078022 | 3077895 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
chr5.3 | exon | 3078886 | 3078967 | 3078886 | ID=MS.gene22288.t1.exon8;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3078886 | 3078967 | 3078886 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
chr5.3 | exon | 3079059 | 3079409 | 3079059 | ID=MS.gene22288.t1.exon9;Parent=MS.gene22288.t1 |
chr5.3 | CDS | 3079059 | 3079409 | 3079059 | ID=cds.MS.gene22288.t1;Parent=MS.gene22288.t1 |
Gene Sequence |
Protein sequence |