Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049065.t1 | XP_003630707.2 | 99.2 | 498 | 4 | 0 | 1 | 498 | 1 | 498 | 1.30E-270 | 941.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049065.t1 | Q9SEK3 | 77.3 | 498 | 113 | 0 | 1 | 498 | 1 | 498 | 1.1e-217 | 757.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049065.t1 | G7L7F0 | 99.2 | 498 | 4 | 0 | 1 | 498 | 1 | 498 | 9.3e-271 | 941.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22288 | MS.gene049065 | PPI |
| MS.gene024702 | MS.gene049065 | PPI |
| MS.gene049065 | MS.gene64012 | PPI |
| MS.gene049065 | MS.gene21950 | PPI |
| MS.gene05986 | MS.gene049065 | PPI |
| MS.gene21680 | MS.gene049065 | PPI |
| MS.gene64215 | MS.gene049065 | PPI |
| MS.gene24159 | MS.gene049065 | PPI |
| MS.gene049065 | MS.gene015822 | PPI |
| MS.gene27072 | MS.gene049065 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049065.t1 | MTR_8g102460 | 99.197 | 498 | 4 | 0 | 1 | 498 | 1 | 498 | 0.0 | 1008 |
| MS.gene049065.t1 | MTR_6g088795 | 78.326 | 466 | 101 | 0 | 33 | 498 | 31 | 496 | 0.0 | 763 |
| MS.gene049065.t1 | MTR_8g014530 | 72.819 | 493 | 133 | 1 | 1 | 493 | 1 | 492 | 0.0 | 739 |
| MS.gene049065.t1 | MTR_8g102460 | 99.174 | 363 | 3 | 0 | 136 | 498 | 1 | 363 | 0.0 | 736 |
| MS.gene049065.t1 | MTR_8g102460 | 99.719 | 356 | 1 | 0 | 1 | 356 | 1 | 356 | 0.0 | 733 |
| MS.gene049065.t1 | MTR_5g009000 | 57.660 | 470 | 187 | 5 | 30 | 490 | 30 | 496 | 0.0 | 521 |
| MS.gene049065.t1 | MTR_1g025140 | 57.395 | 453 | 191 | 2 | 40 | 492 | 42 | 492 | 0.0 | 520 |
| MS.gene049065.t1 | MTR_1g025140 | 60.704 | 341 | 133 | 1 | 40 | 380 | 42 | 381 | 5.22e-144 | 419 |
| MS.gene049065.t1 | MTR_4g097900 | 45.956 | 272 | 109 | 3 | 222 | 493 | 1 | 234 | 1.64e-74 | 235 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049065.t1 | AT4G29130 | 76.876 | 493 | 114 | 0 | 1 | 493 | 1 | 493 | 0.0 | 761 |
| MS.gene049065.t1 | AT2G19860 | 75.252 | 497 | 123 | 0 | 1 | 497 | 1 | 497 | 0.0 | 758 |
| MS.gene049065.t1 | AT2G19860 | 75.000 | 388 | 97 | 0 | 110 | 497 | 1 | 388 | 0.0 | 610 |
| MS.gene049065.t1 | AT1G50460 | 53.911 | 473 | 205 | 4 | 26 | 488 | 26 | 495 | 1.12e-176 | 506 |
| MS.gene049065.t1 | AT3G20040 | 52.429 | 494 | 227 | 3 | 1 | 488 | 1 | 492 | 3.53e-168 | 484 |
| MS.gene049065.t1 | AT1G47840 | 52.735 | 457 | 212 | 4 | 37 | 492 | 40 | 493 | 1.20e-164 | 475 |
| MS.gene049065.t1 | AT1G50460 | 51.970 | 406 | 182 | 4 | 93 | 488 | 17 | 419 | 1.83e-141 | 413 |
| MS.gene049065.t1 | AT1G50460 | 56.495 | 331 | 142 | 2 | 26 | 356 | 26 | 354 | 5.65e-130 | 382 |
| MS.gene049065.t1 | AT4G37840 | 46.187 | 459 | 235 | 5 | 32 | 487 | 33 | 482 | 4.68e-127 | 379 |
| MS.gene049065.t1 | AT1G47840 | 56.075 | 321 | 138 | 3 | 37 | 356 | 40 | 358 | 8.54e-119 | 354 |
| MS.gene049065.t1 | AT1G47845 | 45.294 | 170 | 80 | 4 | 255 | 423 | 26 | 183 | 1.61e-38 | 139 |
Find 126 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCTGCTGCTGGTATTT+TGG | 0.070351 | 4.1:-3239373 | MS.gene049065:CDS |
| AGCTTCTCACTCTCAGTATT+TGG | 0.121428 | 4.1:-3239139 | MS.gene049065:CDS |
| CTTACCATATCTCCTGATTT+TGG | 0.171892 | 4.1:+3240612 | None:intergenic |
| GGCATAAGGCCGTGCCATTT+TGG | 0.223659 | 4.1:+3240633 | None:intergenic |
| TCTTGATCATATTCGGTTAA+AGG | 0.239859 | 4.1:+3240441 | None:intergenic |
| TGTCTCTTCCTAGTTTCTTC+AGG | 0.289084 | 4.1:+3239346 | None:intergenic |
| GTGGCATACCTAAGTATAAA+AGG | 0.291655 | 4.1:+3240180 | None:intergenic |
| CTTCCAACCTCTTTCAGATC+TGG | 0.295103 | 4.1:+3239608 | None:intergenic |
| CGTGTCCTTCGTGTACATTT+AGG | 0.310233 | 4.1:-3241976 | MS.gene049065:CDS |
| AAGCAAATTGAAGGATATAT+TGG | 0.315046 | 4.1:-3239588 | MS.gene049065:CDS |
| ATCAAGATCTTGATCATATT+CGG | 0.322885 | 4.1:+3240434 | None:intergenic |
| GCAATTGAGGTTTGCTTCAC+AGG | 0.339001 | 4.1:+3241676 | None:intergenic |
| GCTTCTCACTCTCAGTATTT+GGG | 0.370715 | 4.1:-3239138 | MS.gene049065:CDS |
| AGTGCACGCCTTGCTGCTGC+TGG | 0.376297 | 4.1:-3239381 | MS.gene049065:CDS |
| ACGCGCATGCTATTCCAAAA+TGG | 0.376503 | 4.1:-3240647 | MS.gene049065:CDS |
| TATGTTGATAATCTTCCTAC+TGG | 0.383423 | 4.1:-3242868 | MS.gene049065:CDS |
| ATTGCTTTCTGGCATGTACT+TGG | 0.384273 | 4.1:-3240286 | MS.gene049065:CDS |
| CGCCGCGGCACAAACGGCGG+CGG | 0.385038 | 4.1:+3243080 | None:intergenic |
| GCTGCTGTGATTCTCGGTAC+TGG | 0.385075 | 4.1:-3240693 | MS.gene049065:CDS |
| CACTAAATTCAGAGTTTGCT+TGG | 0.390939 | 4.1:-3239259 | MS.gene049065:CDS |
| AAGAGCCGCCGCGGCACAAA+CGG | 0.391798 | 4.1:+3243074 | None:intergenic |
| AAGCAAACCTCAATTGCATC+TGG | 0.396002 | 4.1:-3241670 | MS.gene049065:CDS |
| AGCAAGGCGTGCACTGCGAC+TGG | 0.399178 | 4.1:+3239389 | None:intergenic |
| ATCATAATTACCTGTTCTCC+AGG | 0.409907 | 4.1:+3240396 | None:intergenic |
| GTCATTGCTGCTGTGATTCT+CGG | 0.415176 | 4.1:-3240699 | MS.gene049065:CDS |
| CACGCTTACCTCTGAAGAAC+CGG | 0.421516 | 4.1:+3241888 | None:intergenic |
| TGCCGCCGCCGTTTGTGCCG+CGG | 0.424501 | 4.1:-3243082 | MS.gene049065:CDS |
| TATGCCAAAATCAGGAGATA+TGG | 0.424699 | 4.1:-3240616 | MS.gene049065:intron |
| GTAGGTTATAAACATGGAAT+GGG | 0.432293 | 4.1:-3240487 | MS.gene049065:intron |
| CTCTATTATGCTCTAGATCT+TGG | 0.434188 | 4.1:-3242012 | MS.gene049065:CDS |
| GGTGGAGGATGAAAACCTTC+AGG | 0.434285 | 4.1:+3241736 | None:intergenic |
| TTGAAACTTCATCAAACTCT+TGG | 0.434603 | 4.1:+3241929 | None:intergenic |
| ATGTAGGTTAATGATACAAT+TGG | 0.441510 | 4.1:-3240756 | MS.gene049065:intron |
| GCTAATGATGGTTCAGGCAT+TGG | 0.443734 | 4.1:-3239177 | MS.gene049065:CDS |
| ACTAGGAAGAGACACAGTTA+AGG | 0.444325 | 4.1:-3239337 | MS.gene049065:CDS |
| GAGCATGCTAATGATGGTTC+AGG | 0.445261 | 4.1:-3239183 | MS.gene049065:CDS |
| CCGAGTTCTCTTTGTCTGCC+AGG | 0.447341 | 4.1:+3241715 | None:intergenic |
| GATACAATTGGAACATTGGC+TGG | 0.447474 | 4.1:-3240744 | MS.gene049065:CDS |
| CACGGCCTTATGCCAAAATC+AGG | 0.449564 | 4.1:-3240624 | MS.gene049065:CDS |
| AAGCTTAAACCCTGGAGAAC+AGG | 0.452669 | 4.1:-3240406 | MS.gene049065:intron |
| TTGCTTTCTGGCATGTACTT+GGG | 0.455566 | 4.1:-3240285 | MS.gene049065:CDS |
| TGCTTTCTGGCATGTACTTG+GGG | 0.456526 | 4.1:-3240284 | MS.gene049065:CDS |
| ACGGAGAGCTTTGTTGAAGA+TGG | 0.457787 | 4.1:-3240253 | MS.gene049065:CDS |
| TCTCTTTGTCTGCCAGGTGG+AGG | 0.463034 | 4.1:+3241721 | None:intergenic |
| GAAAAGTGTGAGACACCAAT+TGG | 0.463065 | 4.1:-3242982 | MS.gene049065:CDS |
| TGTAGGTTATAAACATGGAA+TGG | 0.471322 | 4.1:-3240488 | MS.gene049065:intron |
| TAGACAGTTGGCTGATGCTA+TGG | 0.474066 | 4.1:-3242953 | MS.gene049065:CDS |
| TTGGGAATCCTGAAGAAACT+AGG | 0.478456 | 4.1:-3239354 | MS.gene049065:CDS |
| CTGCTGTGATTCTCGGTACT+GGG | 0.480970 | 4.1:-3240692 | MS.gene049065:CDS |
| TAGAGTCCCAGATGCAATTG+AGG | 0.487255 | 4.1:+3241663 | None:intergenic |
| GACTCTAATAAAGTGGACTA+AGG | 0.488261 | 4.1:-3241647 | MS.gene049065:CDS |
| GGGAGAACTAACCAAGTCCT+TGG | 0.493228 | 4.1:-3241000 | MS.gene049065:CDS |
| AACTGTCTAAGCTTTCCAAT+TGG | 0.495017 | 4.1:+3242967 | None:intergenic |
| TGGTGTTGTGTCGTGGTGCA+TGG | 0.502741 | 4.1:+3239628 | None:intergenic |
| GTATGATAAGTTCGAGAAAG+TGG | 0.505548 | 4.1:-3243038 | MS.gene049065:CDS |
| AGCCGCCGCGGCACAAACGG+CGG | 0.505594 | 4.1:+3243077 | None:intergenic |
| CAATTGAGGTTTGCTTCACA+GGG | 0.506739 | 4.1:+3241677 | None:intergenic |
| TCACATTATTTGCAGGGATG+AGG | 0.508861 | 4.1:-3242040 | MS.gene049065:intron |
| ATCCCTCCTCAATTGATGAC+CGG | 0.509765 | 4.1:-3241907 | MS.gene049065:CDS |
| CGCCGCCGTTTGTGCCGCGG+CGG | 0.515327 | 4.1:-3243079 | MS.gene049065:CDS |
| TAATGATACAATTGGAACAT+TGG | 0.520504 | 4.1:-3240748 | MS.gene049065:CDS |
| GAGCTGCAACACGCATATCC+AGG | 0.521304 | 4.1:+3240967 | None:intergenic |
| CTAGGAAGAGACACAGTTAA+GGG | 0.522099 | 4.1:-3239336 | MS.gene049065:CDS |
| TGGAGGCAGATTCTACAATC+AGG | 0.523047 | 4.1:-3240724 | MS.gene049065:CDS |
| CATGCTGGTCTTGCATCTGA+AGG | 0.526173 | 4.1:-3242919 | MS.gene049065:CDS |
| TTGTGCCGCGGCGGCTCTTG+TGG | 0.527226 | 4.1:-3243070 | MS.gene049065:CDS |
| GTCGTTGAGCATGCTAATGA+TGG | 0.530025 | 4.1:-3239189 | MS.gene049065:CDS |
| CAGTGATAGCATTGGATGGA+GGG | 0.537158 | 4.1:-3239296 | MS.gene049065:CDS |
| CATTTAGGTGGAAAAGAGAA+AGG | 0.537341 | 4.1:-3241961 | MS.gene049065:CDS |
| AGAGGTTGGAAGCAAATTGA+AGG | 0.538515 | 4.1:-3239597 | MS.gene049065:CDS |
| GAAGGAACTGCTTGGAGATG+AGG | 0.540931 | 4.1:-3239226 | MS.gene049065:CDS |
| TAAGGTCGCGGTGGGAGCTG+CGG | 0.541422 | 4.1:-3243112 | MS.gene049065:CDS |
| CATCTGGGACTCTAATAAAG+TGG | 0.541566 | 4.1:-3241654 | MS.gene049065:CDS |
| ATGGATGTTGAGATGCATGC+TGG | 0.543124 | 4.1:-3242934 | MS.gene049065:CDS |
| TAAGATTTGAGTGATGGGTA+AGG | 0.546558 | 4.1:-3243130 | None:intergenic |
| GTCCTTCGTGTACATTTAGG+TGG | 0.550016 | 4.1:-3241973 | MS.gene049065:CDS |
| GATGCTGAAAGCTTAAACCC+TGG | 0.551347 | 4.1:-3240414 | MS.gene049065:CDS |
| TAAATTCAGAGTTTGCTTGG+AGG | 0.552574 | 4.1:-3239256 | MS.gene049065:CDS |
| GAAGAACCGGTCATCAATTG+AGG | 0.558178 | 4.1:+3241901 | None:intergenic |
| TATTATGCTCTAGATCTTGG+TGG | 0.558418 | 4.1:-3242009 | MS.gene049065:CDS |
| CAAATTGAAGGATATATTGG+AGG | 0.558923 | 4.1:-3239585 | MS.gene049065:intron |
| AATTGGAAAGCTTAGACAGT+TGG | 0.560728 | 4.1:-3242965 | MS.gene049065:CDS |
| GCAAAAGTCAGTGATAGCAT+TGG | 0.560739 | 4.1:-3239304 | MS.gene049065:CDS |
| ACACCAGATCTGAAAGAGGT+TGG | 0.565677 | 4.1:-3239611 | MS.gene049065:CDS |
| CCGCGGCGGCTCTTGTGGTG+CGG | 0.566167 | 4.1:-3243065 | MS.gene049065:CDS |
| GCTGGTCTTGCATCTGAAGG+TGG | 0.566582 | 4.1:-3242916 | MS.gene049065:CDS |
| CACAACACCAGATCTGAAAG+AGG | 0.571670 | 4.1:-3239615 | MS.gene049065:CDS |
| AGCAAACCTCAATTGCATCT+GGG | 0.578513 | 4.1:-3241669 | MS.gene049065:CDS |
| TTTGTTGAGTCAGAACCTGA+AGG | 0.578841 | 4.1:-3241751 | MS.gene049065:CDS |
| TTGAGTGATGGGTAAGGTCG+CGG | 0.581116 | 4.1:-3243124 | None:intergenic |
| GATACGCTGAAGGAACTGCT+TGG | 0.583463 | 4.1:-3239234 | MS.gene049065:CDS |
| ACTCTAATAAAGTGGACTAA+GGG | 0.584848 | 4.1:-3241646 | MS.gene049065:CDS |
| CCAAAATACCAGCAGCAGCA+AGG | 0.587377 | 4.1:+3239373 | None:intergenic |
| ATTATTTGCAGGGATGAGGA+AGG | 0.587877 | 4.1:-3242036 | MS.gene049065:intron |
| ACTTTCTCGAACTTATCATA+CGG | 0.588844 | 4.1:+3243040 | None:intergenic |
| ATTGATGACCGGTTCTTCAG+AGG | 0.592464 | 4.1:-3241896 | MS.gene049065:intron |
| GTAGGTTGGCGAAGATGTGG+TGG | 0.593075 | 4.1:-3241021 | MS.gene049065:intron |
| CCTGGCAGACAAAGAGAACT+CGG | 0.593630 | 4.1:-3241715 | MS.gene049065:CDS |
| GAGAAAGTGGACACGTAGCG+TGG | 0.594090 | 4.1:-3243025 | MS.gene049065:CDS |
| TTAAAGGAAGATGTGATGAT+CGG | 0.599131 | 4.1:+3240457 | None:intergenic |
| AAGTCAGTGATAGCATTGGA+TGG | 0.608938 | 4.1:-3239300 | MS.gene049065:CDS |
| TCATAATTACCTGTTCTCCA+GGG | 0.609665 | 4.1:+3240397 | None:intergenic |
| TTGCTTGGAGGATACGCTGA+AGG | 0.610887 | 4.1:-3239244 | MS.gene049065:CDS |
| TCAGTGATAGCATTGGATGG+AGG | 0.611893 | 4.1:-3239297 | MS.gene049065:CDS |
| GAACCGGTCATCAATTGAGG+AGG | 0.615013 | 4.1:+3241904 | None:intergenic |
| TCAGATCTGGTGTTGTGTCG+TGG | 0.616704 | 4.1:+3239621 | None:intergenic |
| CATGCTATTCCAAAATGGCA+CGG | 0.618027 | 4.1:-3240642 | MS.gene049065:CDS |
| AGTGATGGGTAAGGTCGCGG+TGG | 0.620275 | 4.1:-3243121 | None:intergenic |
| CTTGTAGGTTGGCGAAGATG+TGG | 0.620866 | 4.1:-3241024 | MS.gene049065:intron |
| TTTGTTGAAGATGGCCGAAG+AGG | 0.622326 | 4.1:-3240244 | MS.gene049065:CDS |
| AGTTCTCTTTGTCTGCCAGG+TGG | 0.622694 | 4.1:+3241718 | None:intergenic |
| TGGTGCATGGAAGACATGTC+AGG | 0.624431 | 4.1:+3239641 | None:intergenic |
| GCTTTCTGGCATGTACTTGG+GGG | 0.629925 | 4.1:-3240283 | MS.gene049065:CDS |
| GTGATGGGTAAGGTCGCGGT+GGG | 0.648560 | 4.1:-3243120 | MS.gene049065:CDS |
| CCGCACCACAAGAGCCGCCG+CGG | 0.648816 | 4.1:+3243065 | None:intergenic |
| CTAAATGTACACGAAGGACA+CGG | 0.650048 | 4.1:+3241977 | None:intergenic |
| ATGTTGATAATCTTCCTACT+GGG | 0.651766 | 4.1:-3242867 | MS.gene049065:intron |
| GGAAGAGACACAGTTAAGGG+TGG | 0.653081 | 4.1:-3239333 | MS.gene049065:CDS |
| AATACTGTAGGTTATAAACA+TGG | 0.656730 | 4.1:-3240493 | MS.gene049065:intron |
| AACCGGTCATCAATTGAGGA+GGG | 0.663823 | 4.1:+3241905 | None:intergenic |
| ATTAGCATGCTCAACGACAA+CGG | 0.666183 | 4.1:+3239194 | None:intergenic |
| TAGGTTGGCGAAGATGTGGT+GGG | 0.672008 | 4.1:-3241020 | MS.gene049065:CDS |
| TAGTGACTGACTGACCCAGT+AGG | 0.676585 | 4.1:+3242853 | None:intergenic |
| TAGGTTATAAACATGGAATG+GGG | 0.681790 | 4.1:-3240486 | MS.gene049065:CDS |
| ACAATTGGAACATTGGCTGG+AGG | 0.694331 | 4.1:-3240741 | MS.gene049065:CDS |
| TTCCACCTAAATGTACACGA+AGG | 0.716522 | 4.1:+3241971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATTGTAAAAGAAAT+AGG | + | chr4.1:3240928-3240947 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTATTTGACTTT+TGG | - | chr4.1:3239680-3239699 | MS.gene049065:intron | 10.0% |
| !! | TAGGAAAATAAAAACAAAAA+AGG | + | chr4.1:3242343-3242362 | None:intergenic | 15.0% |
| !!! | GTTTTAACATCTTTTATATT+AGG | - | chr4.1:3242572-3242591 | MS.gene049065:intron | 15.0% |
| !! | AAATTACTTCTAAATACTGT+AGG | - | chr4.1:3241734-3241753 | MS.gene049065:CDS | 20.0% |
| !! | AATGTGAAAAATTACTCAAA+GGG | + | chr4.1:3240178-3240197 | None:intergenic | 20.0% |
| !! | AGGAATTTACATGATTATAA+TGG | - | chr4.1:3239998-3240017 | MS.gene049065:intron | 20.0% |
| !! | AGTCAATGTAAAAAGAATTA+CGG | + | chr4.1:3240636-3240655 | None:intergenic | 20.0% |
| !! | ATACATCATGTATAAATAAG+TGG | + | chr4.1:3239854-3239873 | None:intergenic | 20.0% |
| !! | ATGCTAATGATTCAAAAAAT+AGG | + | chr4.1:3242362-3242381 | None:intergenic | 20.0% |
| !! | GGAATTTACATGATTATAAT+GGG | - | chr4.1:3239999-3240018 | MS.gene049065:intron | 20.0% |
| !! | TACAGTATTTAGAAGTAATT+TGG | + | chr4.1:3241735-3241754 | None:intergenic | 20.0% |
| !! | TACATCATGTATAAATAAGT+GGG | + | chr4.1:3239853-3239872 | None:intergenic | 20.0% |
| !!! | AACAAGTTAGTTTTATTTAG+AGG | + | chr4.1:3241457-3241476 | None:intergenic | 20.0% |
| !!! | ATAAAAGGAATTTTCAACTT+AGG | + | chr4.1:3242047-3242066 | None:intergenic | 20.0% |
| !!! | TAAAAGGAATTTTCAACTTA+GGG | + | chr4.1:3242046-3242065 | None:intergenic | 20.0% |
| !!! | TAATGTTTTTAGAAGTAAAC+AGG | - | chr4.1:3241124-3241143 | MS.gene049065:intron | 20.0% |
| !!! | TGAAAATTCCTTTTATACTT+AGG | - | chr4.1:3242051-3242070 | MS.gene049065:intron | 20.0% |
| !!! | TGGTTTTAAATGAATTGATT+CGG | + | chr4.1:3239923-3239942 | None:intergenic | 20.0% |
| !!! | TTTTGACATATTTGAATACT+TGG | - | chr4.1:3239737-3239756 | MS.gene049065:intron | 20.0% |
| !!! | TTTTTAGTTTTAGCAATTCT+TGG | - | chr4.1:3241415-3241434 | MS.gene049065:intron | 20.0% |
| ! | AAAAGGAATCATTATTGACA+TGG | + | chr4.1:3242089-3242108 | None:intergenic | 25.0% |
| ! | AAATACAGAAATCCTAAAAG+AGG | + | chr4.1:3241314-3241333 | None:intergenic | 25.0% |
| ! | AACACAAAATCAAATGCTTT+GGG | + | chr4.1:3240112-3240131 | None:intergenic | 25.0% |
| ! | AAGCAAATTGAAGGATATAT+TGG | - | chr4.1:3242651-3242670 | MS.gene049065:intron | 25.0% |
| ! | AATACTGTAGGTTATAAACA+TGG | - | chr4.1:3241746-3241765 | MS.gene049065:CDS | 25.0% |
| ! | AATTCATTTCTGATGAAAAG+TGG | + | chr4.1:3239894-3239913 | None:intergenic | 25.0% |
| ! | AGAAATAGGAAGAGAAATAT+TGG | + | chr4.1:3240914-3240933 | None:intergenic | 25.0% |
| ! | ATCAAGATCTTGATCATATT+CGG | + | chr4.1:3241808-3241827 | None:intergenic | 25.0% |
| ! | ATGTAGGTTAATGATACAAT+TGG | - | chr4.1:3241483-3241502 | MS.gene049065:intron | 25.0% |
| ! | ATTCATGCAATTAATAACCA+AGG | + | chr4.1:3242120-3242139 | None:intergenic | 25.0% |
| ! | ATTCATTTCTGATGAAAAGT+GGG | + | chr4.1:3239893-3239912 | None:intergenic | 25.0% |
| ! | CAATGTGAAAAATTACTCAA+AGG | + | chr4.1:3240179-3240198 | None:intergenic | 25.0% |
| ! | GTATTAGATATCTGACAAAA+AGG | + | chr4.1:3242783-3242802 | None:intergenic | 25.0% |
| ! | TAAATAACAACACGAAACAA+TGG | + | chr4.1:3240686-3240705 | None:intergenic | 25.0% |
| ! | TAATGATACAATTGGAACAT+TGG | - | chr4.1:3241491-3241510 | MS.gene049065:intron | 25.0% |
| !! | AAAAGGAATTTTCAACTTAG+GGG | + | chr4.1:3242045-3242064 | None:intergenic | 25.0% |
| !! | AAAGAAAAGTTGTTGATTAG+AGG | - | chr4.1:3239639-3239658 | MS.gene049065:CDS | 25.0% |
| !! | ATTTACATGATTATAATGGG+AGG | - | chr4.1:3240002-3240021 | MS.gene049065:intron | 25.0% |
| !! | CTTTTACCTAGAATCAATAA+GGG | + | chr4.1:3242237-3242256 | None:intergenic | 25.0% |
| !! | TACAATTTTGAACCATTATG+AGG | + | chr4.1:3240829-3240848 | None:intergenic | 25.0% |
| !! | TTCTGAAAACAGAGAAAAAT+GGG | + | chr4.1:3241150-3241169 | None:intergenic | 25.0% |
| !! | TTTCTGAAAACAGAGAAAAA+TGG | + | chr4.1:3241151-3241170 | None:intergenic | 25.0% |
| !!! | ATTTTTGAGAAATTGCTTTC+TGG | - | chr4.1:3241942-3241961 | MS.gene049065:CDS | 25.0% |
| !!! | TGATTTTGTTGTTTGTTACA+GGG | - | chr4.1:3240431-3240450 | MS.gene049065:CDS | 25.0% |
| !!! | TTGATTTTGTTGTTTGTTAC+AGG | - | chr4.1:3240430-3240449 | MS.gene049065:CDS | 25.0% |
| !!! | TTTTATTTGACTTTTGGACA+TGG | - | chr4.1:3239686-3239705 | MS.gene049065:intron | 25.0% |
| AAAGCTTGGATGAATGAAAA+TGG | - | chr4.1:3242253-3242272 | MS.gene049065:intron | 30.0% | |
| AAGATTTATGTAACTCAGCA+GGG | + | chr4.1:3242511-3242530 | None:intergenic | 30.0% | |
| AATTTGTCTCTGACTGAATT+TGG | - | chr4.1:3241366-3241385 | MS.gene049065:intron | 30.0% | |
| ACACAACAACAAAAAGAGAA+AGG | + | chr4.1:3240773-3240792 | None:intergenic | 30.0% | |
| ACATTGTCACATTATTTGCA+GGG | - | chr4.1:3240193-3240212 | MS.gene049065:CDS | 30.0% | |
| ACTATATAGGATGATATGTG+AGG | + | chr4.1:3242721-3242740 | None:intergenic | 30.0% | |
| ACTTTCTCGAACTTATCATA+CGG | + | chr4.1:3239202-3239221 | None:intergenic | 30.0% | |
| ATGAAAGTCGTATTTCAACA+TGG | + | chr4.1:3242697-3242716 | None:intergenic | 30.0% | |
| ATTCGAATGTTGTAGCAATT+AGG | - | chr4.1:3239978-3239997 | MS.gene049065:intron | 30.0% | |
| ATTTAGAAGTAATTTGGCAC+CGG | + | chr4.1:3241729-3241748 | None:intergenic | 30.0% | |
| CAAATTGAAGGATATATTGG+AGG | - | chr4.1:3242654-3242673 | MS.gene049065:intron | 30.0% | |
| CAACACAAAATCAAATGCTT+TGG | + | chr4.1:3240113-3240132 | None:intergenic | 30.0% | |
| CAATAAGGGTGAAAATAAGA+GGG | + | chr4.1:3242223-3242242 | None:intergenic | 30.0% | |
| CTAATACATCACTAAAAACG+AGG | - | chr4.1:3242796-3242815 | MS.gene049065:intron | 30.0% | |
| CTTATCCATTTGAGAGAAAA+TGG | + | chr4.1:3242745-3242764 | None:intergenic | 30.0% | |
| GTAGGTTATAAACATGGAAT+GGG | - | chr4.1:3241752-3241771 | MS.gene049065:CDS | 30.0% | |
| TAACCAAGGCTAAGTATAAA+AGG | + | chr4.1:3242106-3242125 | None:intergenic | 30.0% | |
| TACAATCACAAATCATGGAT+TGG | + | chr4.1:3239592-3239611 | None:intergenic | 30.0% | |
| TAGGTTATAAACATGGAATG+GGG | - | chr4.1:3241753-3241772 | MS.gene049065:CDS | 30.0% | |
| TCAATAAGGGTGAAAATAAG+AGG | + | chr4.1:3242224-3242243 | None:intergenic | 30.0% | |
| TCAGAAATTCTCTCATTGAA+TGG | - | chr4.1:3241164-3241183 | MS.gene049065:intron | 30.0% | |
| TCATAGTGTTTACCTCATAA+TGG | - | chr4.1:3240814-3240833 | MS.gene049065:intron | 30.0% | |
| TCATTATTGACATGGTTTAG+TGG | + | chr4.1:3242081-3242100 | None:intergenic | 30.0% | |
| TCTTGATCATATTCGGTTAA+AGG | + | chr4.1:3241801-3241820 | None:intergenic | 30.0% | |
| TGGTAAGGTTATGAGTAATT+AGG | - | chr4.1:3241643-3241662 | MS.gene049065:CDS | 30.0% | |
| TGTAGGTTATAAACATGGAA+TGG | - | chr4.1:3241751-3241770 | MS.gene049065:CDS | 30.0% | |
| TTAAAGGAAGATGTGATGAT+CGG | + | chr4.1:3241785-3241804 | None:intergenic | 30.0% | |
| TTGAAACTTCATCAAACTCT+TGG | + | chr4.1:3240313-3240332 | None:intergenic | 30.0% | |
| TTTGTGATTGTATCTGGTAT+TGG | - | chr4.1:3239600-3239619 | MS.gene049065:CDS | 30.0% | |
| ! | AAAGGAATTTTCAACTTAGG+GGG | + | chr4.1:3242044-3242063 | None:intergenic | 30.0% |
| ! | AGACAATGAAAACAGTGTTT+TGG | + | chr4.1:3240987-3241006 | None:intergenic | 30.0% |
| ! | ATTCCTTTTATACTTAGCCT+TGG | - | chr4.1:3242100-3242119 | MS.gene049065:intron | 30.0% |
| ! | ATTGATTCTAGGTAAAAGCT+TGG | - | chr4.1:3242239-3242258 | MS.gene049065:intron | 30.0% |
| ! | CAAAAAAGGTATGTTACTAC+TGG | + | chr4.1:3242329-3242348 | None:intergenic | 30.0% |
| ! | GATTTTGTGTTGTGAAAGTT+TGG | - | chr4.1:3240121-3240140 | MS.gene049065:intron | 30.0% |
| ! | GCTTTTACCTAGAATCAATA+AGG | + | chr4.1:3242238-3242257 | None:intergenic | 30.0% |
| ! | TTTTATCCTAACGCAAAAGT+AGG | - | chr4.1:3242387-3242406 | MS.gene049065:intron | 30.0% |
| !! | ACTCTAATAAAGTGGACTAA+GGG | - | chr4.1:3240593-3240612 | MS.gene049065:intron | 30.0% |
| !! | ATGTTGATAATCTTCCTACT+GGG | - | chr4.1:3239372-3239391 | MS.gene049065:CDS | 30.0% |
| !! | CTAACTTGTTGATGTTATGT+AGG | - | chr4.1:3241467-3241486 | MS.gene049065:intron | 30.0% |
| !! | TATGTTGATAATCTTCCTAC+TGG | - | chr4.1:3239371-3239390 | MS.gene049065:CDS | 30.0% |
| !! | TCTTTTTCATCTTCGATTTG+TGG | - | chr4.1:3239425-3239444 | MS.gene049065:CDS | 30.0% |
| !! | TTTGGAGTTACAAGGTTTTA+TGG | - | chr4.1:3241384-3241403 | MS.gene049065:intron | 30.0% |
| !!! | TTTTCACCCTTATTGATTCT+AGG | - | chr4.1:3242228-3242247 | MS.gene049065:intron | 30.0% |
| AAAAACGAGGAAGATTGTTG+TGG | - | chr4.1:3242809-3242828 | MS.gene049065:intron | 35.0% | |
| AACTGTCTAAGCTTTCCAAT+TGG | + | chr4.1:3239275-3239294 | None:intergenic | 35.0% | |
| AAGGATGCTACAAATTCACA+TGG | + | chr4.1:3241899-3241918 | None:intergenic | 35.0% | |
| AATAAGGAGTTCTGCTTGTA+TGG | + | chr4.1:3242457-3242476 | None:intergenic | 35.0% | |
| AATTGGAAAGCTTAGACAGT+TGG | - | chr4.1:3239274-3239293 | MS.gene049065:CDS | 35.0% | |
| ACCAAGTCCTTGGAAAAAAT+TGG | - | chr4.1:3241249-3241268 | MS.gene049065:intron | 35.0% | |
| AGGGTAAAACAGGTGATAAA+GGG | + | chr4.1:3242492-3242511 | None:intergenic | 35.0% | |
| AGGGTGAAGGAATGAAAATA+AGG | + | chr4.1:3242473-3242492 | None:intergenic | 35.0% | |
| ATCATAATTACCTGTTCTCC+AGG | + | chr4.1:3241846-3241865 | None:intergenic | 35.0% | |
| CAAAATCAGGAGATATGGTA+AGG | - | chr4.1:3241628-3241647 | MS.gene049065:CDS | 35.0% | |
| CACATTGTCACATTATTTGC+AGG | - | chr4.1:3240192-3240211 | MS.gene049065:CDS | 35.0% | |
| CATTTAGGTGGAAAAGAGAA+AGG | - | chr4.1:3240278-3240297 | MS.gene049065:CDS | 35.0% | |
| CCAGATACAATCACAAATCA+TGG | + | chr4.1:3239597-3239616 | None:intergenic | 35.0% | |
| CTCTTCGCAGTGATAAAAAT+TGG | + | chr4.1:3239943-3239962 | None:intergenic | 35.0% | |
| GAAGATTTATGTAACTCAGC+AGG | + | chr4.1:3242512-3242531 | None:intergenic | 35.0% | |
| GAGAGAAAATGGCACTATAT+AGG | + | chr4.1:3242734-3242753 | None:intergenic | 35.0% | |
| GAGAGACTCATTTAAGTATC+TGG | + | chr4.1:3240730-3240749 | None:intergenic | 35.0% | |
| GAGGCTAAAAACAATTGTAG+AGG | + | chr4.1:3239815-3239834 | None:intergenic | 35.0% | |
| GAGGTAAACACTATGATATC+TGG | + | chr4.1:3240810-3240829 | None:intergenic | 35.0% | |
| GAGTCTTTCATCTCATTGTT+AGG | - | chr4.1:3241062-3241081 | MS.gene049065:intron | 35.0% | |
| GATGATTCAGTCACATTGAA+TGG | - | chr4.1:3240074-3240093 | MS.gene049065:intron | 35.0% | |
| GTATGATAAGTTCGAGAAAG+TGG | - | chr4.1:3239201-3239220 | MS.gene049065:CDS | 35.0% | |
| GTGGCATACCTAAGTATAAA+AGG | + | chr4.1:3242062-3242081 | None:intergenic | 35.0% | |
| TATGCCAAAATCAGGAGATA+TGG | - | chr4.1:3241623-3241642 | MS.gene049065:intron | 35.0% | |
| TCATAATTACCTGTTCTCCA+GGG | + | chr4.1:3241845-3241864 | None:intergenic | 35.0% | |
| TCTCAAAAATCTGTGAACGA+TGG | + | chr4.1:3241932-3241951 | None:intergenic | 35.0% | |
| TTTAGAAGTAATTTGGCACC+GGG | + | chr4.1:3241728-3241747 | None:intergenic | 35.0% | |
| ! | CACTAAATTCAGAGTTTGCT+TGG | - | chr4.1:3242980-3242999 | MS.gene049065:CDS | 35.0% |
| ! | CCATGATTTGTGATTGTATC+TGG | - | chr4.1:3239594-3239613 | MS.gene049065:CDS | 35.0% |
| ! | CTCTATTATGCTCTAGATCT+TGG | - | chr4.1:3240227-3240246 | MS.gene049065:CDS | 35.0% |
| ! | CTTACCATATCTCCTGATTT+TGG | + | chr4.1:3241630-3241649 | None:intergenic | 35.0% |
| ! | TAAATTCAGAGTTTGCTTGG+AGG | - | chr4.1:3242983-3243002 | MS.gene049065:CDS | 35.0% |
| ! | TATTATGCTCTAGATCTTGG+TGG | - | chr4.1:3240230-3240249 | MS.gene049065:CDS | 35.0% |
| ! | TGACTGAATTTGGAGTTACA+AGG | - | chr4.1:3241376-3241395 | MS.gene049065:intron | 35.0% |
| ! | TGGGTTGAACAGTAAATTTG+AGG | + | chr4.1:3239834-3239853 | None:intergenic | 35.0% |
| !! | GACTCTAATAAAGTGGACTA+AGG | - | chr4.1:3240592-3240611 | MS.gene049065:intron | 35.0% |
| !! | GAGATCACATGTTTTGTTAC+TGG | + | chr4.1:3240042-3240061 | None:intergenic | 35.0% |
| !! | GATCATTTTAGTATCAGCCT+TGG | - | chr4.1:3242195-3242214 | MS.gene049065:intron | 35.0% |
| !! | TATCTCCTGATTTTGGCATA+AGG | + | chr4.1:3241623-3241642 | None:intergenic | 35.0% |
| !! | TGGCTATTTTGAAGGAGTTT+GGG | - | chr4.1:3239234-3239253 | MS.gene049065:CDS | 35.0% |
| !!! | TAGTGCCATTTTCTCTCAAA+TGG | - | chr4.1:3242737-3242756 | MS.gene049065:intron | 35.0% |
| AAACAGGTGATAAAGGGTGA+AGG | + | chr4.1:3242486-3242505 | None:intergenic | 40.0% | |
| AAGCAAACCTCAATTGCATC+TGG | - | chr4.1:3240569-3240588 | MS.gene049065:intron | 40.0% | |
| ACTAGGAAGAGACACAGTTA+AGG | - | chr4.1:3242902-3242921 | MS.gene049065:CDS | 40.0% | |
| AGAGGTTGGAAGCAAATTGA+AGG | - | chr4.1:3242642-3242661 | MS.gene049065:intron | 40.0% | |
| AGCAAACCTCAATTGCATCT+GGG | - | chr4.1:3240570-3240589 | MS.gene049065:intron | 40.0% | |
| ATTAGCATGCTCAACGACAA+CGG | + | chr4.1:3243048-3243067 | None:intergenic | 40.0% | |
| ATTATTTGCAGGGATGAGGA+AGG | - | chr4.1:3240203-3240222 | MS.gene049065:CDS | 40.0% | |
| CAAAAATCTGTGAACGATGG+TGG | + | chr4.1:3241929-3241948 | None:intergenic | 40.0% | |
| CAGGGTAAAACAGGTGATAA+AGG | + | chr4.1:3242493-3242512 | None:intergenic | 40.0% | |
| CATGCTATTCCAAAATGGCA+CGG | - | chr4.1:3241597-3241616 | MS.gene049065:intron | 40.0% | |
| CTAAATGTACACGAAGGACA+CGG | + | chr4.1:3240265-3240284 | None:intergenic | 40.0% | |
| CTAGGAAGAGACACAGTTAA+GGG | - | chr4.1:3242903-3242922 | MS.gene049065:CDS | 40.0% | |
| GATACAATTGGAACATTGGC+TGG | - | chr4.1:3241495-3241514 | MS.gene049065:intron | 40.0% | |
| GCAAAAGTCAGTGATAGCAT+TGG | - | chr4.1:3242935-3242954 | MS.gene049065:CDS | 40.0% | |
| GTGAAAATAAGAGGGAACCA+AGG | + | chr4.1:3242215-3242234 | None:intergenic | 40.0% | |
| GTGACTGAATCATCAACAAG+TGG | + | chr4.1:3240068-3240087 | None:intergenic | 40.0% | |
| TCACATTATTTGCAGGGATG+AGG | - | chr4.1:3240199-3240218 | MS.gene049065:CDS | 40.0% | |
| TCCGAAAAATTCAGCCTCTT+CGG | + | chr4.1:3242012-3242031 | None:intergenic | 40.0% | |
| TCTATCACTTGCTTGTAGGT+TGG | - | chr4.1:3241204-3241223 | MS.gene049065:intron | 40.0% | |
| TCTGTTCAGACTTCTTCATG+TGG | - | chr4.1:3242173-3242192 | MS.gene049065:intron | 40.0% | |
| TGTACTTGGGGGAAATTGTA+CGG | - | chr4.1:3241967-3241986 | MS.gene049065:CDS | 40.0% | |
| TGTCTCTTCCTAGTTTCTTC+AGG | + | chr4.1:3242896-3242915 | None:intergenic | 40.0% | |
| TGTCTTACGATGCTACTAAG+AGG | - | chr4.1:3241688-3241707 | MS.gene049065:CDS | 40.0% | |
| TTCAGAGGTAAGCGTGTTAT+GGG | - | chr4.1:3240358-3240377 | MS.gene049065:intron | 40.0% | |
| TTCCACCTAAATGTACACGA+AGG | + | chr4.1:3240271-3240290 | None:intergenic | 40.0% | |
| TTGAATGGTCATCTGACAGT+TGG | - | chr4.1:3241179-3241198 | MS.gene049065:intron | 40.0% | |
| TTGGGAATCCTGAAGAAACT+AGG | - | chr4.1:3242885-3242904 | MS.gene049065:CDS | 40.0% | |
| TTTGTTGAGTCAGAACCTGA+AGG | - | chr4.1:3240488-3240507 | MS.gene049065:intron | 40.0% | |
| ! | AAGTCAGTGATAGCATTGGA+TGG | - | chr4.1:3242939-3242958 | MS.gene049065:CDS | 40.0% |
| ! | ATTGCTTTCTGGCATGTACT+TGG | - | chr4.1:3241953-3241972 | MS.gene049065:CDS | 40.0% |
| ! | CAATTGAGGTTTGCTTCACA+GGG | + | chr4.1:3240565-3240584 | None:intergenic | 40.0% |
| ! | CAGTCTCATTCTCCTCTTTT+AGG | - | chr4.1:3241299-3241318 | MS.gene049065:intron | 40.0% |
| ! | CATCTGGGACTCTAATAAAG+TGG | - | chr4.1:3240585-3240604 | MS.gene049065:intron | 40.0% |
| ! | GAAAAGTGTGAGACACCAAT+TGG | - | chr4.1:3239257-3239276 | MS.gene049065:CDS | 40.0% |
| ! | TTGCTTTCTGGCATGTACTT+GGG | - | chr4.1:3241954-3241973 | MS.gene049065:CDS | 40.0% |
| !! | AAGTGGGTTGAACGTATGTT+TGG | + | chr4.1:3239877-3239896 | None:intergenic | 40.0% |
| !! | GGCTATTTTGAAGGAGTTTG+GGG | - | chr4.1:3239235-3239254 | MS.gene049065:CDS | 40.0% |
| !! | GTGGCTATTTTGAAGGAGTT+TGG | - | chr4.1:3239233-3239252 | MS.gene049065:CDS | 40.0% |
| !! | TCTATGCCTACTTTTGCGTT+AGG | + | chr4.1:3242396-3242415 | None:intergenic | 40.0% |
| !!! | ATCCAGGCCAATTTTTTCCA+AGG | + | chr4.1:3241259-3241278 | None:intergenic | 40.0% |
| !!! | GCCAATTTTTTCCAAGGACT+TGG | + | chr4.1:3241253-3241272 | None:intergenic | 40.0% |
| AACCGGTCATCAATTGAGGA+GGG | + | chr4.1:3240337-3240356 | None:intergenic | 45.0% | |
| AAGCTTAAACCCTGGAGAAC+AGG | - | chr4.1:3241833-3241852 | MS.gene049065:intron | 45.0% | |
| ACACCAGATCTGAAAGAGGT+TGG | - | chr4.1:3242628-3242647 | MS.gene049065:intron | 45.0% | |
| ACGCGCATGCTATTCCAAAA+TGG | - | chr4.1:3241592-3241611 | MS.gene049065:intron | 45.0% | |
| ATGGATGTTGAGATGCATGC+TGG | - | chr4.1:3239305-3239324 | MS.gene049065:CDS | 45.0% | |
| CACAACACCAGATCTGAAAG+AGG | - | chr4.1:3242624-3242643 | MS.gene049065:intron | 45.0% | |
| CGTGTCCTTCGTGTACATTT+AGG | - | chr4.1:3240263-3240282 | MS.gene049065:CDS | 45.0% | |
| CTTCAGAGGTAAGCGTGTTA+TGG | - | chr4.1:3240357-3240376 | MS.gene049065:intron | 45.0% | |
| CTTCCAACCTCTTTCAGATC+TGG | + | chr4.1:3242634-3242653 | None:intergenic | 45.0% | |
| GAAGAACCGGTCATCAATTG+AGG | + | chr4.1:3240341-3240360 | None:intergenic | 45.0% | |
| GAGCATGCTAATGATGGTTC+AGG | - | chr4.1:3243056-3243075 | MS.gene049065:CDS | 45.0% | |
| GATGCTGAAAGCTTAAACCC+TGG | - | chr4.1:3241825-3241844 | MS.gene049065:intron | 45.0% | |
| GCTAATGATGGTTCAGGCAT+TGG | - | chr4.1:3243062-3243081 | MS.gene049065:CDS | 45.0% | |
| GGTCTCTATCACTTGCTTGT+AGG | - | chr4.1:3241200-3241219 | MS.gene049065:intron | 45.0% | |
| GTAACTCAGCAGGGTAAAAC+AGG | + | chr4.1:3242502-3242521 | None:intergenic | 45.0% | |
| GTCATTGCTGCTGTGATTCT+CGG | - | chr4.1:3241540-3241559 | MS.gene049065:intron | 45.0% | |
| GTCCTTCGTGTACATTTAGG+TGG | - | chr4.1:3240266-3240285 | MS.gene049065:CDS | 45.0% | |
| GTCCTTGGAAAAAATTGGCC+TGG | - | chr4.1:3241254-3241273 | MS.gene049065:intron | 45.0% | |
| GTCGTTGAGCATGCTAATGA+TGG | - | chr4.1:3243050-3243069 | MS.gene049065:CDS | 45.0% | |
| TAGACAGTTGGCTGATGCTA+TGG | - | chr4.1:3239286-3239305 | MS.gene049065:CDS | 45.0% | |
| TAGAGTCCCAGATGCAATTG+AGG | + | chr4.1:3240579-3240598 | None:intergenic | 45.0% | |
| TGGAGGCAGATTCTACAATC+AGG | - | chr4.1:3241515-3241534 | MS.gene049065:intron | 45.0% | |
| TTACGATGCTACTAAGAGGC+AGG | - | chr4.1:3241692-3241711 | MS.gene049065:CDS | 45.0% | |
| TTTGTTGAAGATGGCCGAAG+AGG | - | chr4.1:3241995-3242014 | MS.gene049065:CDS | 45.0% | |
| ! | ACAATTGGAACATTGGCTGG+AGG | - | chr4.1:3241498-3241517 | MS.gene049065:intron | 45.0% |
| ! | ATCCCTCCTCAATTGATGAC+CGG | - | chr4.1:3240332-3240351 | MS.gene049065:intron | 45.0% |
| ! | ATTGATGACCGGTTCTTCAG+AGG | - | chr4.1:3240343-3240362 | MS.gene049065:intron | 45.0% |
| ! | CAGTGATAGCATTGGATGGA+GGG | - | chr4.1:3242943-3242962 | MS.gene049065:CDS | 45.0% |
| ! | CTTGCTGCTGCTGGTATTTT+GGG | - | chr4.1:3242867-3242886 | MS.gene049065:intron | 45.0% |
| ! | GCAATTGAGGTTTGCTTCAC+AGG | + | chr4.1:3240566-3240585 | None:intergenic | 45.0% |
| ! | GCCGAAGAGGCTGAATTTTT+CGG | - | chr4.1:3242008-3242027 | MS.gene049065:CDS | 45.0% |
| ! | TCAGTGATAGCATTGGATGG+AGG | - | chr4.1:3242942-3242961 | MS.gene049065:CDS | 45.0% |
| ! | TGCTTTCTGGCATGTACTTG+GGG | - | chr4.1:3241955-3241974 | MS.gene049065:CDS | 45.0% |
| !! | AATCTGTGAACGATGGTGGA+AGG | + | chr4.1:3241925-3241944 | None:intergenic | 45.0% |
| !! | ACGGAGAGCTTTGTTGAAGA+TGG | - | chr4.1:3241986-3242005 | MS.gene049065:CDS | 45.0% |
| !! | ACGTAGCGTGGCTATTTTGA+AGG | - | chr4.1:3239226-3239245 | MS.gene049065:CDS | 45.0% |
| !! | ATTAATCAAATTATATTTAT+TGG | - | chr4.1:3241864-3241883 | MS.gene049065:intron | 5.0% |
| AGTTCTCTTTGTCTGCCAGG+TGG | + | chr4.1:3240524-3240543 | None:intergenic | 50.0% | |
| CCAAAATACCAGCAGCAGCA+AGG | + | chr4.1:3242869-3242888 | None:intergenic | 50.0% | |
| CCTGGCAGACAAAGAGAACT+CGG | - | chr4.1:3240524-3240543 | MS.gene049065:intron | 50.0% | |
| CTGCTGTGATTCTCGGTACT+GGG | - | chr4.1:3241547-3241566 | MS.gene049065:intron | 50.0% | |
| GAACCGGTCATCAATTGAGG+AGG | + | chr4.1:3240338-3240357 | None:intergenic | 50.0% | |
| GAAGGAACTGCTTGGAGATG+AGG | - | chr4.1:3243013-3243032 | MS.gene049065:CDS | 50.0% | |
| GATACGCTGAAGGAACTGCT+TGG | - | chr4.1:3243005-3243024 | MS.gene049065:CDS | 50.0% | |
| GGAAGAGACACAGTTAAGGG+TGG | - | chr4.1:3242906-3242925 | MS.gene049065:CDS | 50.0% | |
| GGGAGAACTAACCAAGTCCT+TGG | - | chr4.1:3241239-3241258 | MS.gene049065:intron | 50.0% | |
| GGTGGAGGATGAAAACCTTC+AGG | + | chr4.1:3240506-3240525 | None:intergenic | 50.0% | |
| TAGTGACTGACTGACCCAGT+AGG | + | chr4.1:3239389-3239408 | None:intergenic | 50.0% | |
| TGGTGCATGGAAGACATGTC+AGG | + | chr4.1:3242601-3242620 | None:intergenic | 50.0% | |
| TTGCTTGGAGGATACGCTGA+AGG | - | chr4.1:3242995-3243014 | MS.gene049065:CDS | 50.0% | |
| ! | CACGCTTACCTCTGAAGAAC+CGG | + | chr4.1:3240354-3240373 | None:intergenic | 50.0% |
| ! | CACGGCCTTATGCCAAAATC+AGG | - | chr4.1:3241615-3241634 | MS.gene049065:intron | 50.0% |
| ! | CCTTGCTGCTGCTGGTATTT+TGG | - | chr4.1:3242866-3242885 | MS.gene049065:intron | 50.0% |
| ! | CTTGTAGGTTGGCGAAGATG+TGG | - | chr4.1:3241215-3241234 | MS.gene049065:intron | 50.0% |
| ! | GAAGGTTTTCATCCTCCACC+TGG | - | chr4.1:3240506-3240525 | MS.gene049065:intron | 50.0% |
| ! | GCTTTCTGGCATGTACTTGG+GGG | - | chr4.1:3241956-3241975 | MS.gene049065:CDS | 50.0% |
| ! | TAGGTTGGCGAAGATGTGGT+GGG | - | chr4.1:3241219-3241238 | MS.gene049065:intron | 50.0% |
| !! | CATGCTGGTCTTGCATCTGA+AGG | - | chr4.1:3239320-3239339 | MS.gene049065:CDS | 50.0% |
| !! | GAACGATGGTGGAAGGATCA+AGG | + | chr4.1:3241918-3241937 | None:intergenic | 50.0% |
| !! | TCAGATCTGGTGTTGTGTCG+TGG | + | chr4.1:3242621-3242640 | None:intergenic | 50.0% |
| CCGAGTTCTCTTTGTCTGCC+AGG | + | chr4.1:3240527-3240546 | None:intergenic | 55.0% | |
| GAGAAAGTGGACACGTAGCG+TGG | - | chr4.1:3239214-3239233 | MS.gene049065:CDS | 55.0% | |
| GAGCTGCAACACGCATATCC+AGG | + | chr4.1:3241275-3241294 | None:intergenic | 55.0% | |
| GAGGCAGGTCATGACTAACC+CGG | - | chr4.1:3241707-3241726 | MS.gene049065:CDS | 55.0% | |
| GCTGCTGTGATTCTCGGTAC+TGG | - | chr4.1:3241546-3241565 | MS.gene049065:intron | 55.0% | |
| TCTCTTTGTCTGCCAGGTGG+AGG | + | chr4.1:3240521-3240540 | None:intergenic | 55.0% | |
| ! | GTAGGTTGGCGAAGATGTGG+TGG | - | chr4.1:3241218-3241237 | MS.gene049065:intron | 55.0% |
| !! | GCTGGTCTTGCATCTGAAGG+TGG | - | chr4.1:3239323-3239342 | MS.gene049065:CDS | 55.0% |
| !! | TGGTGTTGTGTCGTGGTGCA+TGG | + | chr4.1:3242614-3242633 | None:intergenic | 55.0% |
| !!! | GGCATAAGGCCGTGCCATTT+TGG | + | chr4.1:3241609-3241628 | None:intergenic | 55.0% |
| AAGAGCCGCCGCGGCACAAA+CGG | + | chr4.1:3239168-3239187 | None:intergenic | 65.0% | |
| AGCAAGGCGTGCACTGCGAC+TGG | + | chr4.1:3242853-3242872 | None:intergenic | 65.0% | |
| AGTGCACGCCTTGCTGCTGC+TGG | - | chr4.1:3242858-3242877 | MS.gene049065:intron | 65.0% | |
| TAAGGTCGCGGTGGGAGCTG+CGG | - | chr4.1:3239127-3239146 | MS.gene049065:CDS | 65.0% | |
| TTGTGCCGCGGCGGCTCTTG+TGG | - | chr4.1:3239169-3239188 | MS.gene049065:CDS | 70.0% | |
| AGCCGCCGCGGCACAAACGG+CGG | + | chr4.1:3239165-3239184 | None:intergenic | 75.0% | |
| CCGCACCACAAGAGCCGCCG+CGG | + | chr4.1:3239177-3239196 | None:intergenic | 75.0% | |
| CCGCGGCGGCTCTTGTGGTG+CGG | - | chr4.1:3239174-3239193 | MS.gene049065:CDS | 75.0% | |
| TGCCGCCGCCGTTTGTGCCG+CGG | - | chr4.1:3239157-3239176 | MS.gene049065:CDS | 75.0% | |
| ! | CGCCGCCGTTTGTGCCGCGG+CGG | - | chr4.1:3239160-3239179 | MS.gene049065:CDS | 80.0% |
| ! | CGCCGCGGCACAAACGGCGG+CGG | + | chr4.1:3239162-3239181 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 3239122 | 3243139 | 3239122 | ID=MS.gene049065 |
| chr4.1 | mRNA | 3239122 | 3243139 | 3239122 | ID=MS.gene049065.t1;Parent=MS.gene049065 |
| chr4.1 | exon | 3242868 | 3243139 | 3242868 | ID=MS.gene049065.t1.exon1;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3242868 | 3243139 | 3242868 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| chr4.1 | exon | 3241897 | 3242047 | 3241897 | ID=MS.gene049065.t1.exon2;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3241897 | 3242047 | 3241897 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| chr4.1 | exon | 3241627 | 3241809 | 3241627 | ID=MS.gene049065.t1.exon3;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3241627 | 3241809 | 3241627 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| chr4.1 | exon | 3240965 | 3241039 | 3240965 | ID=MS.gene049065.t1.exon4;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3240965 | 3241039 | 3240965 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| chr4.1 | exon | 3240617 | 3240772 | 3240617 | ID=MS.gene049065.t1.exon5;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3240617 | 3240772 | 3240617 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| chr4.1 | exon | 3240407 | 3240505 | 3240407 | ID=MS.gene049065.t1.exon6;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3240407 | 3240505 | 3240407 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| chr4.1 | exon | 3240189 | 3240319 | 3240189 | ID=MS.gene049065.t1.exon7;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3240189 | 3240319 | 3240189 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| chr4.1 | exon | 3239586 | 3239667 | 3239586 | ID=MS.gene049065.t1.exon8;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3239586 | 3239667 | 3239586 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| chr4.1 | exon | 3239122 | 3239469 | 3239122 | ID=MS.gene049065.t1.exon9;Parent=MS.gene049065.t1 |
| chr4.1 | CDS | 3239122 | 3239469 | 3239122 | ID=cds.MS.gene049065.t1;Parent=MS.gene049065.t1 |
| Gene Sequence |
| Protein sequence |
