Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27965.t1 | XP_024629307.1 | 97.7 | 176 | 4 | 0 | 1 | 176 | 1 | 176 | 4.90E-39 | 171 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27965.t1 | P94077 | 75.4 | 187 | 32 | 4 | 1 | 176 | 6 | 189 | 7.4e-20 | 98.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27965.t1 | G7L9L6 | 97.7 | 176 | 4 | 0 | 1 | 176 | 1 | 176 | 3.5e-39 | 171.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27965.t1 | TF | C2C2-LSD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene27965 | -0.812924 | 3.32E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene27965 | -0.811924 | 5.49E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene27965 | 0.803146 | 4.01E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene27965 | -0.802967 | 4.36E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene27965 | -0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene27965 | -0.814443 | 1.54E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene27965 | -0.816757 | 4.69E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene27965 | -0.808819 | 2.57E-50 | -1.69E-46 |
| MS.gene059896 | MS.gene27965 | 0.822577 | 2.20E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene27965 | 0.81773 | 2.83E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27965.t1 | MTR_8g089310 | 97.727 | 176 | 4 | 0 | 1 | 176 | 48 | 223 | 1.67e-124 | 349 |
| MS.gene27965.t1 | MTR_8g089310 | 97.727 | 176 | 4 | 0 | 1 | 176 | 14 | 189 | 3.05e-124 | 347 |
| MS.gene27965.t1 | MTR_8g089310 | 97.727 | 176 | 4 | 0 | 1 | 176 | 1 | 176 | 4.54e-124 | 347 |
| MS.gene27965.t1 | MTR_2g047838 | 71.508 | 179 | 42 | 2 | 1 | 176 | 1 | 173 | 4.43e-87 | 253 |
| MS.gene27965.t1 | MTR_4g098500 | 71.681 | 113 | 32 | 0 | 2 | 114 | 5 | 117 | 7.17e-57 | 175 |
| MS.gene27965.t1 | MTR_4g098500 | 71.681 | 113 | 32 | 0 | 2 | 114 | 31 | 143 | 4.73e-56 | 174 |
| MS.gene27965.t1 | MTR_4g088850 | 50.633 | 79 | 39 | 0 | 41 | 119 | 40 | 118 | 7.81e-24 | 91.3 |
| MS.gene27965.t1 | MTR_4g088850 | 42.105 | 76 | 43 | 1 | 3 | 78 | 41 | 115 | 4.10e-11 | 58.2 |
| MS.gene27965.t1 | MTR_4g088850 | 50.000 | 76 | 38 | 0 | 41 | 116 | 40 | 115 | 2.82e-22 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27965.t1 | AT4G20380 | 71.123 | 187 | 40 | 4 | 1 | 176 | 6 | 189 | 3.51e-75 | 223 |
| MS.gene27965.t1 | AT4G20380 | 71.123 | 187 | 40 | 4 | 1 | 176 | 6 | 189 | 3.51e-75 | 223 |
| MS.gene27965.t1 | AT4G20380 | 71.123 | 187 | 40 | 4 | 1 | 176 | 1 | 184 | 5.87e-75 | 223 |
| MS.gene27965.t1 | AT4G20380 | 71.123 | 187 | 40 | 4 | 1 | 176 | 1 | 184 | 5.87e-75 | 223 |
| MS.gene27965.t1 | AT4G20380 | 71.123 | 187 | 40 | 4 | 1 | 176 | 1 | 184 | 5.87e-75 | 223 |
| MS.gene27965.t1 | AT4G20380 | 71.123 | 187 | 40 | 4 | 1 | 176 | 1 | 184 | 5.87e-75 | 223 |
| MS.gene27965.t1 | AT4G20380 | 71.123 | 187 | 40 | 4 | 1 | 176 | 1 | 184 | 5.87e-75 | 223 |
| MS.gene27965.t1 | AT4G20380 | 62.441 | 213 | 40 | 4 | 1 | 176 | 1 | 210 | 8.54e-71 | 213 |
| MS.gene27965.t1 | AT1G32540 | 71.818 | 110 | 31 | 0 | 2 | 111 | 65 | 174 | 1.90e-55 | 173 |
| MS.gene27965.t1 | AT1G32540 | 71.818 | 110 | 31 | 0 | 2 | 111 | 32 | 141 | 1.69e-54 | 170 |
| MS.gene27965.t1 | AT1G32540 | 71.818 | 110 | 31 | 0 | 2 | 111 | 32 | 141 | 1.69e-54 | 170 |
| MS.gene27965.t1 | AT1G32540 | 73.148 | 108 | 29 | 0 | 2 | 109 | 32 | 139 | 6.22e-54 | 169 |
| MS.gene27965.t1 | AT4G20380 | 67.742 | 124 | 29 | 3 | 1 | 113 | 1 | 124 | 6.98e-50 | 157 |
| MS.gene27965.t1 | AT1G32540 | 76.389 | 72 | 17 | 0 | 2 | 73 | 65 | 136 | 3.13e-36 | 123 |
| MS.gene27965.t1 | AT1G32540 | 53.030 | 66 | 30 | 1 | 42 | 106 | 66 | 131 | 2.67e-13 | 64.3 |
| MS.gene27965.t1 | AT1G32540 | 76.389 | 72 | 17 | 0 | 2 | 73 | 32 | 103 | 1.41e-35 | 120 |
| MS.gene27965.t1 | AT1G32540 | 51.471 | 68 | 32 | 1 | 42 | 108 | 33 | 100 | 2.06e-13 | 63.5 |
| MS.gene27965.t1 | AT1G32540 | 76.389 | 72 | 17 | 0 | 2 | 73 | 32 | 103 | 1.41e-35 | 120 |
| MS.gene27965.t1 | AT1G32540 | 51.471 | 68 | 32 | 1 | 42 | 108 | 33 | 100 | 2.06e-13 | 63.5 |
| MS.gene27965.t1 | AT4G21610 | 51.250 | 80 | 39 | 0 | 40 | 119 | 57 | 136 | 6.70e-24 | 92.0 |
| MS.gene27965.t1 | AT4G21610 | 48.276 | 87 | 42 | 1 | 40 | 123 | 57 | 143 | 6.92e-22 | 86.7 |
Find 50 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTTGGCTCTGAGATT+GGG | 0.218971 | 4.4:+11939898 | None:intergenic |
| CCACTGTTTGGCTCTGAGAT+TGG | 0.301892 | 4.4:+11939897 | None:intergenic |
| TGTTGATTCAAGTGGGAAAT+TGG | 0.322882 | 4.4:-11939855 | MS.gene27965:intron |
| ACAACACTCATGTATCCTTA+TGG | 0.360459 | 4.4:-11941299 | MS.gene27965:CDS |
| AATGGAAGGCTTCCAATTCC+TGG | 0.374088 | 4.4:-11940103 | MS.gene27965:CDS |
| AAGTAGCCCATGTCCCTTGC+GGG | 0.401008 | 4.4:-11941331 | MS.gene27965:CDS |
| GGCAGTTCCCGCAAGGGACA+TGG | 0.407023 | 4.4:+11941324 | None:intergenic |
| CAAACATTGGTTGCCCCTCT+AGG | 0.429678 | 4.4:+11943672 | None:intergenic |
| TGAGGTCTATGACCAGGAAT+TGG | 0.430540 | 4.4:+11940091 | None:intergenic |
| ATGTCCCTTGCGGGAACTGC+CGG | 0.445439 | 4.4:-11941322 | MS.gene27965:CDS |
| CCACTTGAATCAACAGACAT+TGG | 0.458263 | 4.4:+11939863 | None:intergenic |
| CAGGTGAGCAATGTTGTTGT+TGG | 0.459951 | 4.4:-11939718 | MS.gene27965:CDS |
| AAACATACCGTTGAAGTAGA+AGG | 0.466644 | 4.4:+11940043 | None:intergenic |
| AGGAATTGGAAGCCTTCCAT+TGG | 0.509054 | 4.4:+11940105 | None:intergenic |
| ATTCCTGGTCATAGACCTCA+TGG | 0.517397 | 4.4:-11940088 | MS.gene27965:CDS |
| AAACATTGGTTGCCCCTCTA+GGG | 0.521552 | 4.4:+11943673 | None:intergenic |
| AACGTTACCTTCTACTTCAA+CGG | 0.522038 | 4.4:-11940050 | MS.gene27965:intron |
| GCATGTTGCTTTACCCTAGA+GGG | 0.526229 | 4.4:-11943686 | MS.gene27965:CDS |
| ACCTCATGGGACAACCGACT+CGG | 0.535011 | 4.4:-11940074 | MS.gene27965:CDS |
| TTGACTGAAGGAGCTCCATA+AGG | 0.536562 | 4.4:+11941284 | None:intergenic |
| AAGGATACATGAGTGTTGTC+CGG | 0.538194 | 4.4:+11941303 | None:intergenic |
| ACTGTTTGGCTCTGAGATTG+GGG | 0.544116 | 4.4:+11939899 | None:intergenic |
| GTTGTCCGGCAGTTCCCGCA+AGG | 0.550249 | 4.4:+11941317 | None:intergenic |
| AACTTGTGTGTAATGGTTGT+AGG | 0.557278 | 4.4:-11943710 | MS.gene27965:CDS |
| GCAGTTCCCGCAAGGGACAT+GGG | 0.560859 | 4.4:+11941325 | None:intergenic |
| CAGAGTCAACTTGTGTGTAA+TGG | 0.563559 | 4.4:-11943717 | MS.gene27965:CDS |
| AGAAGGTAACGTTCCCGAGT+CGG | 0.568975 | 4.4:+11940060 | None:intergenic |
| GATATGTCTCAACTATATTG+TGG | 0.572327 | 4.4:-11943451 | MS.gene27965:CDS |
| CCTCATGGGACAACCGACTC+GGG | 0.573013 | 4.4:-11940073 | MS.gene27965:CDS |
| CCAATGTCTGTTGATTCAAG+TGG | 0.574429 | 4.4:-11939863 | MS.gene27965:CDS |
| GTCCCATGAGGTCTATGACC+AGG | 0.579327 | 4.4:+11940085 | None:intergenic |
| AACTATATTGTGGAGGCTGT+AGG | 0.590469 | 4.4:-11943441 | MS.gene27965:CDS |
| TTGTCCGGCAGTTCCCGCAA+GGG | 0.594632 | 4.4:+11941318 | None:intergenic |
| ATTACCTCTGTTCCTCCACC+TGG | 0.595203 | 4.4:-11943630 | MS.gene27965:intron |
| CATACTGTAAACCTTGCTCC+AGG | 0.599148 | 4.4:-11943367 | MS.gene27965:intron |
| CAATGTCTGTTGATTCAAGT+GGG | 0.600952 | 4.4:-11939862 | MS.gene27965:CDS |
| CGTTGGAGCTTACCAGGTGG+AGG | 0.603157 | 4.4:+11943618 | None:intergenic |
| AATGTACATTACCTGGAGCA+AGG | 0.619025 | 4.4:+11943356 | None:intergenic |
| GCACAATGCACAACAAACAT+TGG | 0.623040 | 4.4:+11943659 | None:intergenic |
| ATCTCAGAGCCAAACAGTGG+TGG | 0.625723 | 4.4:-11939894 | MS.gene27965:CDS |
| AGCATGTTGCTTTACCCTAG+AGG | 0.627744 | 4.4:-11943687 | MS.gene27965:CDS |
| CAAACAGCACATTTGACTGA+AGG | 0.639168 | 4.4:+11941272 | None:intergenic |
| ATGTCTCAACTATATTGTGG+AGG | 0.644670 | 4.4:-11943448 | MS.gene27965:CDS |
| CCCGAGTCGGTTGTCCCATG+AGG | 0.645647 | 4.4:+11940073 | None:intergenic |
| CAAGTAGCCCATGTCCCTTG+CGG | 0.646539 | 4.4:-11941332 | MS.gene27965:CDS |
| CATGTTGCTTTACCCTAGAG+GGG | 0.647362 | 4.4:-11943685 | MS.gene27965:CDS |
| CTTACCAGGTGGAGGAACAG+AGG | 0.665101 | 4.4:+11943626 | None:intergenic |
| TTCCTGGTCATAGACCTCAT+GGG | 0.677943 | 4.4:-11940087 | MS.gene27965:CDS |
| CCAATCTCAGAGCCAAACAG+TGG | 0.689166 | 4.4:-11939897 | MS.gene27965:CDS |
| ACATTGTTAATGTACACACG+CGG | 0.795848 | 4.4:-11943418 | MS.gene27965:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGAAAAAATAATACTT+TGG | - | chr4.4:11943096-11943115 | MS.gene27965:intron | 10.0% |
| !!! | TAAAATTTAAAATGTTATAC+GGG | - | chr4.4:11940845-11940864 | MS.gene27965:intron | 10.0% |
| !!! | ATTCAACAAGATTTTTTTTT+AGG | + | chr4.4:11941521-11941540 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTAGTTTTGTTTT+TGG | - | chr4.4:11943400-11943419 | MS.gene27965:CDS | 15.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | - | chr4.4:11943062-11943081 | MS.gene27965:intron | 20.0% |
| !! | AACATGTAGTTGTTTATAAA+TGG | + | chr4.4:11941677-11941696 | None:intergenic | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | + | chr4.4:11943063-11943082 | None:intergenic | 20.0% |
| !! | AGTGTTTCATTATTTAATCT+TGG | - | chr4.4:11941832-11941851 | MS.gene27965:intron | 20.0% |
| !! | CTTGAAATCTGATTATAAAA+AGG | - | chr4.4:11942354-11942373 | MS.gene27965:intron | 20.0% |
| !! | GAAATTGAAGATTATTACAA+TGG | + | chr4.4:11940670-11940689 | None:intergenic | 20.0% |
| !! | GTAACATAGTATTAATTGAA+GGG | - | chr4.4:11943126-11943145 | MS.gene27965:intron | 20.0% |
| !! | TGTAAAATGGAATTCTTTAT+TGG | + | chr4.4:11941987-11942006 | None:intergenic | 20.0% |
| !! | TGTAACATAGTATTAATTGA+AGG | - | chr4.4:11943125-11943144 | MS.gene27965:intron | 20.0% |
| !!! | AGACTTGTTTAAAATGAATT+TGG | - | chr4.4:11943668-11943687 | MS.gene27965:CDS | 20.0% |
| !!! | ATATTTGCATAATCATTTTC+TGG | - | chr4.4:11941740-11941759 | MS.gene27965:intron | 20.0% |
| !!! | CATTTTGAAACAGATTTTTT+TGG | - | chr4.4:11943200-11943219 | MS.gene27965:intron | 20.0% |
| !!! | CTAAAACAGTTATGTTATTT+AGG | - | chr4.4:11940610-11940629 | MS.gene27965:intron | 20.0% |
| !!! | TATTTGCATAATCATTTTCT+GGG | - | chr4.4:11941741-11941760 | MS.gene27965:intron | 20.0% |
| !!! | TCACACATAGATTATTTTTT+TGG | - | chr4.4:11942637-11942656 | MS.gene27965:intron | 20.0% |
| !!! | TTTAATCTGCGTTTTTAAAT+AGG | - | chr4.4:11942607-11942626 | MS.gene27965:intron | 20.0% |
| !!! | TTTTTTTTAGGAAGAATTGA+TGG | + | chr4.4:11941509-11941528 | None:intergenic | 20.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | + | chr4.4:11943072-11943091 | None:intergenic | 25.0% |
| ! | AAACAACTACATGTTAATCT+GGG | - | chr4.4:11941682-11941701 | MS.gene27965:intron | 25.0% |
| ! | AACATTGAACACATCTTAAA+GGG | - | chr4.4:11942863-11942882 | MS.gene27965:intron | 25.0% |
| ! | AATTTGGAGACAAAATTTCT+TGG | - | chr4.4:11941285-11941304 | MS.gene27965:CDS | 25.0% |
| ! | ATTATTACAATGGAACACTA+GGG | + | chr4.4:11940660-11940679 | None:intergenic | 25.0% |
| ! | CAATAAAAATAATGACAACC+TGG | - | chr4.4:11941318-11941337 | MS.gene27965:CDS | 25.0% |
| ! | CCAACTTAAAAGAATAAGAT+TGG | - | chr4.4:11942783-11942802 | MS.gene27965:intron | 25.0% |
| ! | GAATAAATCACACTGTAAAA+TGG | + | chr4.4:11942000-11942019 | None:intergenic | 25.0% |
| ! | GAGATTTATTTACGCTAAAA+AGG | - | chr4.4:11940902-11940921 | MS.gene27965:intron | 25.0% |
| ! | TAAACAACTACATGTTAATC+TGG | - | chr4.4:11941681-11941700 | MS.gene27965:intron | 25.0% |
| ! | TAGTCTTTAATTCTTGTATG+TGG | + | chr4.4:11942297-11942316 | None:intergenic | 25.0% |
| ! | TGAGAACATTAGAGTTATAA+TGG | - | chr4.4:11940955-11940974 | MS.gene27965:intron | 25.0% |
| ! | TTATTTACGCTAAAAAGGAT+GGG | - | chr4.4:11940907-11940926 | MS.gene27965:intron | 25.0% |
| ! | TTGAACAAAGCAAGAAAATA+AGG | + | chr4.4:11940811-11940830 | None:intergenic | 25.0% |
| ! | TTGCTAAATAAGATTGCTAA+TGG | - | chr4.4:11940699-11940718 | MS.gene27965:intron | 25.0% |
| ! | TTTATTTACGCTAAAAAGGA+TGG | - | chr4.4:11940906-11940925 | MS.gene27965:intron | 25.0% |
| !! | AGTCACTGAATAATTTCTTT+TGG | - | chr4.4:11940735-11940754 | MS.gene27965:intron | 25.0% |
| !! | CAGCTAATGTTTTGTAAATT+TGG | - | chr4.4:11941269-11941288 | MS.gene27965:CDS | 25.0% |
| !! | CTACAGAATTTTGTTAATCT+GGG | - | chr4.4:11942201-11942220 | MS.gene27965:intron | 25.0% |
| !! | TCTACAGAATTTTGTTAATC+TGG | - | chr4.4:11942200-11942219 | MS.gene27965:intron | 25.0% |
| !!! | CCAATCTTATTCTTTTAAGT+TGG | + | chr4.4:11942786-11942805 | None:intergenic | 25.0% |
| !!! | TGTATGTTTTGAACTGTATT+TGG | - | chr4.4:11940321-11940340 | MS.gene27965:intron | 25.0% |
| !!! | TTCAAAATGAATGTCACTTT+CGG | + | chr4.4:11943189-11943208 | None:intergenic | 25.0% |
| AAAAGCAAATGTACATTACC+TGG | + | chr4.4:11940070-11940089 | None:intergenic | 30.0% | |
| AAATAATGAAACACTGACCT+TGG | + | chr4.4:11941827-11941846 | None:intergenic | 30.0% | |
| AAGAATAAGATTGGAGTCTA+AGG | - | chr4.4:11942792-11942811 | MS.gene27965:intron | 30.0% | |
| AAGTAGCTACAGAATTAGTT+AGG | + | chr4.4:11942530-11942549 | None:intergenic | 30.0% | |
| AAGTGAAGAATCAACACATT+CGG | + | chr4.4:11941547-11941566 | None:intergenic | 30.0% | |
| AATCAAAGAAGACTGAATCA+GGG | + | chr4.4:11940772-11940791 | None:intergenic | 30.0% | |
| CAACATTGAACACATCTTAA+AGG | - | chr4.4:11942862-11942881 | MS.gene27965:intron | 30.0% | |
| CAAGCTTATCAAGAATAAGT+AGG | + | chr4.4:11942722-11942741 | None:intergenic | 30.0% | |
| CAGTATGAAAAAATCAACTC+AGG | + | chr4.4:11943270-11943289 | None:intergenic | 30.0% | |
| GAGGTTTGAAGAGTAATAAA+AGG | + | chr4.4:11941885-11941904 | None:intergenic | 30.0% | |
| GATATGTCTCAACTATATTG+TGG | - | chr4.4:11939965-11939984 | MS.gene27965:intron | 30.0% | |
| GATGTACGAACATTACATAT+AGG | + | chr4.4:11939855-11939874 | None:intergenic | 30.0% | |
| GATTATAAAAAGGATCCCAT+GGG | - | chr4.4:11942364-11942383 | MS.gene27965:intron | 30.0% | |
| GATTATTACAATGGAACACT+AGG | + | chr4.4:11940661-11940680 | None:intergenic | 30.0% | |
| GTGGTTTAGTATTAGTTAAG+CGG | - | chr4.4:11940117-11940136 | MS.gene27965:intron | 30.0% | |
| TAAAGACTAGTATGAGAGAA+AGG | - | chr4.4:11942308-11942327 | MS.gene27965:intron | 30.0% | |
| TGATTATAAAAAGGATCCCA+TGG | - | chr4.4:11942363-11942382 | MS.gene27965:intron | 30.0% | |
| TGGTGATTAATAGCATAGAA+AGG | - | chr4.4:11943420-11943439 | MS.gene27965:CDS | 30.0% | |
| TGGTTATAGTAGTAAAGGAA+GGG | + | chr4.4:11942507-11942526 | None:intergenic | 30.0% | |
| TGGTTTAGTATTAGTTAAGC+GGG | - | chr4.4:11940118-11940137 | MS.gene27965:intron | 30.0% | |
| TGGTTTATTTATGTTGGTCA+CGG | - | chr4.4:11940587-11940606 | MS.gene27965:intron | 30.0% | |
| TGTGAGTGGTTTATTTATGT+TGG | - | chr4.4:11940581-11940600 | MS.gene27965:intron | 30.0% | |
| TTAGAGTTATAATGGCTAAG+TGG | - | chr4.4:11940963-11940982 | MS.gene27965:intron | 30.0% | |
| TTAGGTGGTTATAGTAGTAA+AGG | + | chr4.4:11942512-11942531 | None:intergenic | 30.0% | |
| TTAGGTGTTCTTACTTGTAA+TGG | - | chr4.4:11940628-11940647 | MS.gene27965:intron | 30.0% | |
| TTATAATGGCTAAGTGGTTA+TGG | - | chr4.4:11940969-11940988 | MS.gene27965:intron | 30.0% | |
| TTGAACTGTATTTGGATAAG+AGG | - | chr4.4:11940329-11940348 | MS.gene27965:intron | 30.0% | |
| ! | AAAATGCTTTTCCAAAAAGG+TGG | - | chr4.4:11941113-11941132 | MS.gene27965:intron | 30.0% |
| ! | ATGATGTTCTTTTGTATGCA+TGG | - | chr4.4:11940429-11940448 | MS.gene27965:intron | 30.0% |
| ! | CATTTTAAGCTTTGCAGAAA+AGG | + | chr4.4:11941009-11941028 | None:intergenic | 30.0% |
| ! | GCTAAAATGCTTTTCCAAAA+AGG | - | chr4.4:11941110-11941129 | MS.gene27965:intron | 30.0% |
| ! | TACATGTTAATCTGGGATTA+AGG | - | chr4.4:11941689-11941708 | MS.gene27965:intron | 30.0% |
| ! | TCTGCGTTTTTAAATAGGAA+AGG | - | chr4.4:11942612-11942631 | MS.gene27965:intron | 30.0% |
| !! | CATCTCTTTGAAATAAAGTC+TGG | - | chr4.4:11941579-11941598 | MS.gene27965:intron | 30.0% |
| !! | GATTCAGTTAATTTGTAGGA+AGG | + | chr4.4:11942484-11942503 | None:intergenic | 30.0% |
| !! | TGAGACTCTAAGTTGATATT+AGG | - | chr4.4:11939910-11939929 | MS.gene27965:intron | 30.0% |
| !! | TTACTTTGATTCCACTTTTG+AGG | - | chr4.4:11940484-11940503 | MS.gene27965:intron | 30.0% |
| !! | TTTTTAGGAAGAATTGATGG+AGG | + | chr4.4:11941506-11941525 | None:intergenic | 30.0% |
| AAACATACCGTTGAAGTAGA+AGG | + | chr4.4:11943376-11943395 | None:intergenic | 35.0% | |
| AACGTTACCTTCTACTTCAA+CGG | - | chr4.4:11943366-11943385 | MS.gene27965:intron | 35.0% | |
| AACTTGTGTGTAATGGTTGT+AGG | - | chr4.4:11939706-11939725 | MS.gene27965:CDS | 35.0% | |
| AATAGAATCAGTTCCTTGAG+TGG | + | chr4.4:11941469-11941488 | None:intergenic | 35.0% | |
| ACAACAAATGACCTCAAAAG+TGG | + | chr4.4:11940498-11940517 | None:intergenic | 35.0% | |
| ACAACACTCATGTATCCTTA+TGG | - | chr4.4:11942117-11942136 | MS.gene27965:intron | 35.0% | |
| ACATTGTTAATGTACACACG+CGG | - | chr4.4:11939998-11940017 | MS.gene27965:intron | 35.0% | |
| ATACAAAGCCTCTACAATAG+AGG | + | chr4.4:11941904-11941923 | None:intergenic | 35.0% | |
| ATGAAATTTCATTCCCGTTG+AGG | - | chr4.4:11942911-11942930 | MS.gene27965:intron | 35.0% | |
| ATGTCTCAACTATATTGTGG+AGG | - | chr4.4:11939968-11939987 | MS.gene27965:intron | 35.0% | |
| ATTGCACACAGATTAAGGAA+TGG | - | chr4.4:11943006-11943025 | MS.gene27965:intron | 35.0% | |
| ATTGGACATCTACAAAAGAC+AGG | + | chr4.4:11943296-11943315 | None:intergenic | 35.0% | |
| CACAACATCAACTTGATCAT+TGG | + | chr4.4:11940558-11940577 | None:intergenic | 35.0% | |
| CAGCACCTCAGTTATAAAAA+AGG | + | chr4.4:11942413-11942432 | None:intergenic | 35.0% | |
| CATCATAATCTACAAACTGC+AGG | + | chr4.4:11940415-11940434 | None:intergenic | 35.0% | |
| CATTGCTTGATCATGGAATA+TGG | - | chr4.4:11940207-11940226 | MS.gene27965:intron | 35.0% | |
| GAATCAAAGAAGACTGAATC+AGG | + | chr4.4:11940773-11940792 | None:intergenic | 35.0% | |
| GGAGATACATTTAAGTCTTC+TGG | - | chr4.4:11942658-11942677 | MS.gene27965:intron | 35.0% | |
| GGTTATAGTAGTAAAGGAAG+GGG | + | chr4.4:11942506-11942525 | None:intergenic | 35.0% | |
| GTGGTTATAGTAGTAAAGGA+AGG | + | chr4.4:11942508-11942527 | None:intergenic | 35.0% | |
| TAAGCTTTGCAGAAAAGGTT+AGG | + | chr4.4:11941004-11941023 | None:intergenic | 35.0% | |
| TACAACAGACAAAAGCTCAA+AGG | + | chr4.4:11942937-11942956 | None:intergenic | 35.0% | |
| TAGCATAGAAAGGATGATGT+TGG | - | chr4.4:11943430-11943449 | MS.gene27965:CDS | 35.0% | |
| TAGCTACAGAATTAGTTAGG+TGG | + | chr4.4:11942527-11942546 | None:intergenic | 35.0% | |
| TATTGCTTGCATTTAGTCCA+AGG | - | chr4.4:11941807-11941826 | MS.gene27965:intron | 35.0% | |
| TATTTCAAAGAGATGACGTG+AGG | + | chr4.4:11941574-11941593 | None:intergenic | 35.0% | |
| TCTTCAAACCTCTATTGTAG+AGG | - | chr4.4:11941893-11941912 | MS.gene27965:intron | 35.0% | |
| TGTATTTGGATAAGAGGCAA+TGG | - | chr4.4:11940335-11940354 | MS.gene27965:intron | 35.0% | |
| TGTGAAAGGTGAATGTATGT+TGG | - | chr4.4:11941154-11941173 | MS.gene27965:intron | 35.0% | |
| TTCCTTAATCTGTGTGCAAT+TGG | + | chr4.4:11943006-11943025 | None:intergenic | 35.0% | |
| TTTAATAACGAGAACAGCGT+TGG | + | chr4.4:11939818-11939837 | None:intergenic | 35.0% | |
| TTTAGTATTAGTTAAGCGGG+TGG | - | chr4.4:11940121-11940140 | MS.gene27965:intron | 35.0% | |
| TTTATGAGCCTTGGTAAACA+CGG | - | chr4.4:11940521-11940540 | MS.gene27965:intron | 35.0% | |
| ! | GAGCTTTTGTCTGTTGTAAA+TGG | - | chr4.4:11942939-11942958 | MS.gene27965:intron | 35.0% |
| ! | TAGTGAAAGGTTTGGTTGTT+TGG | - | chr4.4:11940366-11940385 | MS.gene27965:intron | 35.0% |
| ! | TCTTTCTGAACTGTTAGCTT+TGG | + | chr4.4:11942445-11942464 | None:intergenic | 35.0% |
| ! | TGTCTTTTGTAGATGTCCAA+TGG | - | chr4.4:11943295-11943314 | MS.gene27965:intron | 35.0% |
| ! | TTTTGTAGATGTCCAATGGA+AGG | - | chr4.4:11943299-11943318 | MS.gene27965:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr4.4:11943226-11943245 | MS.gene27965:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4.4:11943245-11943226 | None:intergenic | 35.0% |
| !! | AGGGGATTCAGTTAATTTGT+AGG | + | chr4.4:11942488-11942507 | None:intergenic | 35.0% |
| !! | CAATGTCTGTTGATTCAAGT+GGG | - | chr4.4:11943554-11943573 | MS.gene27965:intron | 35.0% |
| !! | CTTTCTGAACTGTTAGCTTT+GGG | + | chr4.4:11942444-11942463 | None:intergenic | 35.0% |
| !! | TCAGTTAATTTGTAGGAAGG+CGG | + | chr4.4:11942481-11942500 | None:intergenic | 35.0% |
| !! | TGTTGATTCAAGTGGGAAAT+TGG | - | chr4.4:11943561-11943580 | MS.gene27965:intron | 35.0% |
| !! | TGTTGTGTTTTTATGAGCCT+TGG | - | chr4.4:11940512-11940531 | MS.gene27965:intron | 35.0% |
| !! | TTTCTGAACTGTTAGCTTTG+GGG | + | chr4.4:11942443-11942462 | None:intergenic | 35.0% |
| AAAATCCCGTCTTATGTTCC+TGG | - | chr4.4:11941347-11941366 | MS.gene27965:intron | 40.0% | |
| AAATCCCGTCTTATGTTCCT+GGG | - | chr4.4:11941348-11941367 | MS.gene27965:intron | 40.0% | |
| AACTATATTGTGGAGGCTGT+AGG | - | chr4.4:11939975-11939994 | MS.gene27965:intron | 40.0% | |
| AATGTACATTACCTGGAGCA+AGG | + | chr4.4:11940063-11940082 | None:intergenic | 40.0% | |
| AGCCAATTGCACACAGATTA+AGG | - | chr4.4:11943001-11943020 | MS.gene27965:intron | 40.0% | |
| ATAGTACTCGTCAAGACGAA+CGG | + | chr4.4:11941861-11941880 | None:intergenic | 40.0% | |
| ATCAGATTCTACACCACTCA+AGG | - | chr4.4:11941453-11941472 | MS.gene27965:intron | 40.0% | |
| ATTTACTGCACGATTGGTGT+TGG | - | chr4.4:11941034-11941053 | MS.gene27965:intron | 40.0% | |
| CAAACAGCACATTTGACTGA+AGG | + | chr4.4:11942147-11942166 | None:intergenic | 40.0% | |
| CAGAGTCAACTTGTGTGTAA+TGG | - | chr4.4:11939699-11939718 | MS.gene27965:CDS | 40.0% | |
| CAGTTCAAAACATACACTCG+AGG | + | chr4.4:11940317-11940336 | None:intergenic | 40.0% | |
| CATTCACCTTTCACAAGCAT+AGG | + | chr4.4:11941149-11941168 | None:intergenic | 40.0% | |
| CCAATAACTGGAATGAGGTT+GGG | - | chr4.4:11941083-11941102 | MS.gene27965:intron | 40.0% | |
| CCACTTGAATCAACAGACAT+TGG | + | chr4.4:11943556-11943575 | None:intergenic | 40.0% | |
| GAAGCTATTTACTGCACGAT+TGG | - | chr4.4:11941028-11941047 | MS.gene27965:intron | 40.0% | |
| GAGAATCCAAAGTTTCCCTA+GGG | + | chr4.4:11942839-11942858 | None:intergenic | 40.0% | |
| GCACAATGCACAACAAACAT+TGG | + | chr4.4:11939760-11939779 | None:intergenic | 40.0% | |
| GGATCCCAATATCTGATAAC+CGG | + | chr4.4:11942765-11942784 | None:intergenic | 40.0% | |
| TAATCCGTACACGAGGATTT+CGG | + | chr4.4:11940251-11940270 | None:intergenic | 40.0% | |
| TATATGCCCTAGGGAAACTT+TGG | - | chr4.4:11942830-11942849 | MS.gene27965:intron | 40.0% | |
| TCCAATAACTGGAATGAGGT+TGG | - | chr4.4:11941082-11941101 | MS.gene27965:intron | 40.0% | |
| TGAGAATCCAAAGTTTCCCT+AGG | + | chr4.4:11942840-11942859 | None:intergenic | 40.0% | |
| TTGGATAAGAGGCAATGGAA+GGG | - | chr4.4:11940340-11940359 | MS.gene27965:intron | 40.0% | |
| TTTCCCTAGGGCATATAAGT+CGG | + | chr4.4:11942827-11942846 | None:intergenic | 40.0% | |
| TTTGCACACTACGAGATGTT+TGG | - | chr4.4:11941937-11941956 | MS.gene27965:intron | 40.0% | |
| TTTGCTGCATTGCTTGATCA+TGG | - | chr4.4:11940200-11940219 | MS.gene27965:intron | 40.0% | |
| TTTGGATAAGAGGCAATGGA+AGG | - | chr4.4:11940339-11940358 | MS.gene27965:intron | 40.0% | |
| ! | AAGGATACATGAGTGTTGTC+CGG | + | chr4.4:11942116-11942135 | None:intergenic | 40.0% |
| ! | ACATGCCGGTTATCAGATAT+TGG | - | chr4.4:11942757-11942776 | MS.gene27965:intron | 40.0% |
| ! | AGACGGGATTTTATAGTACC+AGG | + | chr4.4:11941339-11941358 | None:intergenic | 40.0% |
| ! | ATACGGGATTCCTTTTGCAT+GGG | - | chr4.4:11940861-11940880 | MS.gene27965:intron | 40.0% |
| ! | CATGCCGGTTATCAGATATT+GGG | - | chr4.4:11942758-11942777 | MS.gene27965:intron | 40.0% |
| ! | GATTTTCTACCACCACTGTT+TGG | + | chr4.4:11943534-11943553 | None:intergenic | 40.0% |
| ! | TATACGGGATTCCTTTTGCA+TGG | - | chr4.4:11940860-11940879 | MS.gene27965:intron | 40.0% |
| ! | TCGTTCAAGTTATCACATGC+CGG | - | chr4.4:11942743-11942762 | MS.gene27965:intron | 40.0% |
| ! | TCTTATTTAGCAACAGCGTC+TGG | + | chr4.4:11940692-11940711 | None:intergenic | 40.0% |
| ! | TTGATGTTGTGACTTGTGAG+TGG | - | chr4.4:11940567-11940586 | MS.gene27965:intron | 40.0% |
| ! | TTTACTGCACGATTGGTGTT+GGG | - | chr4.4:11941035-11941054 | MS.gene27965:intron | 40.0% |
| !! | CCAATGTCTGTTGATTCAAG+TGG | - | chr4.4:11943553-11943572 | MS.gene27965:intron | 40.0% |
| !! | TTAATTTGTAGGAAGGCGGA+AGG | + | chr4.4:11942477-11942496 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4.4:11943230-11943249 | MS.gene27965:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4.4:11943249-11943230 | None:intergenic | 40.0% |
| !!! | GGCAGCCTTTTTTATAACTG+AGG | - | chr4.4:11942405-11942424 | MS.gene27965:intron | 40.0% |
| AAAAGCTCAAAGGCCTCAAC+GGG | + | chr4.4:11942927-11942946 | None:intergenic | 45.0% | |
| AAAAGGCTGCCCTTTGTTGA+AGG | + | chr4.4:11942396-11942415 | None:intergenic | 45.0% | |
| AAACCCGACTTATATGCCCT+AGG | - | chr4.4:11942820-11942839 | MS.gene27965:intron | 45.0% | |
| AAAGGATGGGTGCTTAGTCT+TGG | - | chr4.4:11940920-11940939 | MS.gene27965:intron | 45.0% | |
| AAAGGCTGCCCTTTGTTGAA+GGG | + | chr4.4:11942395-11942414 | None:intergenic | 45.0% | |
| AACCCGACTTATATGCCCTA+GGG | - | chr4.4:11942821-11942840 | MS.gene27965:intron | 45.0% | |
| AATGACCTTAATGTACCCCC+TGG | + | chr4.4:11940274-11940293 | None:intergenic | 45.0% | |
| AATGGAAGGCTTCCAATTCC+TGG | - | chr4.4:11943313-11943332 | MS.gene27965:intron | 45.0% | |
| ACAATGGAACACTAGGGAAG+AGG | + | chr4.4:11940654-11940673 | None:intergenic | 45.0% | |
| AGAGAAGCAGTCAAATGCAG+TGG | + | chr4.4:11943628-11943647 | None:intergenic | 45.0% | |
| AGGAATTGGAAGCCTTCCAT+TGG | + | chr4.4:11943314-11943333 | None:intergenic | 45.0% | |
| ATTCCAGTTATTGGAGCCAG+TGG | + | chr4.4:11941077-11941096 | None:intergenic | 45.0% | |
| ATTCCTGGTCATAGACCTCA+TGG | - | chr4.4:11943328-11943347 | MS.gene27965:intron | 45.0% | |
| CAAAAGCTCAAAGGCCTCAA+CGG | + | chr4.4:11942928-11942947 | None:intergenic | 45.0% | |
| CAGGTGAGCAATGTTGTTGT+TGG | - | chr4.4:11943698-11943717 | MS.gene27965:CDS | 45.0% | |
| CATACTGTAAACCTTGCTCC+AGG | - | chr4.4:11940049-11940068 | MS.gene27965:intron | 45.0% | |
| CCCAACCTCATTCCAGTTAT+TGG | + | chr4.4:11941086-11941105 | None:intergenic | 45.0% | |
| CTCTTCCCAGGAACATAAGA+CGG | + | chr4.4:11941356-11941375 | None:intergenic | 45.0% | |
| GCTTGACAGATGAAGCTTAG+TGG | - | chr4.4:11940098-11940117 | MS.gene27965:CDS | 45.0% | |
| GGTGAATGTATGTTGGAGAG+TGG | - | chr4.4:11941161-11941180 | MS.gene27965:intron | 45.0% | |
| TAGTTAAGCGGGTGGCATAT+TGG | - | chr4.4:11940129-11940148 | MS.gene27965:intron | 45.0% | |
| TCTTCCCAGGAACATAAGAC+GGG | + | chr4.4:11941355-11941374 | None:intergenic | 45.0% | |
| TGAGGTCTATGACCAGGAAT+TGG | + | chr4.4:11943328-11943347 | None:intergenic | 45.0% | |
| TGGATAAGAGGCAATGGAAG+GGG | - | chr4.4:11940341-11940360 | MS.gene27965:intron | 45.0% | |
| TGGCTCCAATAACTGGAATG+AGG | - | chr4.4:11941078-11941097 | MS.gene27965:intron | 45.0% | |
| TGTTGAAGGGGAAAACCCAT+GGG | + | chr4.4:11942382-11942401 | None:intergenic | 45.0% | |
| TTCCAGTTATTGGAGCCAGT+GGG | + | chr4.4:11941076-11941095 | None:intergenic | 45.0% | |
| TTCCCTAGGGCATATAAGTC+GGG | + | chr4.4:11942826-11942845 | None:intergenic | 45.0% | |
| TTCCTGGTCATAGACCTCAT+GGG | - | chr4.4:11943329-11943348 | MS.gene27965:intron | 45.0% | |
| TTGACTGAAGGAGCTCCATA+AGG | + | chr4.4:11942135-11942154 | None:intergenic | 45.0% | |
| TTGTTGAAGGGGAAAACCCA+TGG | + | chr4.4:11942383-11942402 | None:intergenic | 45.0% | |
| ! | AAACATTGGTTGCCCCTCTA+GGG | + | chr4.4:11939746-11939765 | None:intergenic | 45.0% |
| ! | AAGGGGGTTAGTGAAAGGTT+TGG | - | chr4.4:11940358-11940377 | MS.gene27965:intron | 45.0% |
| ! | AATGGAAGGGGGTTAGTGAA+AGG | - | chr4.4:11940353-11940372 | MS.gene27965:intron | 45.0% |
| ! | GATTACCAGGGGGTACATTA+AGG | - | chr4.4:11940266-11940285 | MS.gene27965:intron | 45.0% |
| ! | GGGTTTTCCCCTTCAACAAA+GGG | - | chr4.4:11942384-11942403 | MS.gene27965:intron | 45.0% |
| ! | TACGGGATTCCTTTTGCATG+GGG | - | chr4.4:11940862-11940881 | MS.gene27965:intron | 45.0% |
| ! | TGGGTTTTCCCCTTCAACAA+AGG | - | chr4.4:11942383-11942402 | MS.gene27965:intron | 45.0% |
| !! | ACTGTTTGGCTCTGAGATTG+GGG | + | chr4.4:11943520-11943539 | None:intergenic | 45.0% |
| !! | AGCATGTTGCTTTACCCTAG+AGG | - | chr4.4:11939729-11939748 | MS.gene27965:intron | 45.0% |
| !! | CACTGTTTGGCTCTGAGATT+GGG | + | chr4.4:11943521-11943540 | None:intergenic | 45.0% |
| !! | CATGTTGCTTTACCCTAGAG+GGG | - | chr4.4:11939731-11939750 | MS.gene27965:intron | 45.0% |
| !! | GCATGTTGCTTTACCCTAGA+GGG | - | chr4.4:11939730-11939749 | MS.gene27965:intron | 45.0% |
| !! | GGTGCTTAGTCTTGGTAAGT+TGG | - | chr4.4:11940928-11940947 | MS.gene27965:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr4.4:11943229-11943248 | MS.gene27965:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4.4:11943248-11943229 | None:intergenic | 45.0% |
| !!! | ATAAAATTTAAAATGTTATA+CGG | - | chr4.4:11940844-11940863 | MS.gene27965:intron | 5.0% |
| AAATTTGTCCGCCTCTTCCC+AGG | + | chr4.4:11941368-11941387 | None:intergenic | 50.0% | |
| AAGGCTGCCCTTTGTTGAAG+GGG | + | chr4.4:11942394-11942413 | None:intergenic | 50.0% | |
| AGAAGGTAACGTTCCCGAGT+CGG | + | chr4.4:11943359-11943378 | None:intergenic | 50.0% | |
| ATCTCAGAGCCAAACAGTGG+TGG | - | chr4.4:11943522-11943541 | MS.gene27965:intron | 50.0% | |
| ATGGGGGTCATTTGGCTACT+CGG | - | chr4.4:11940879-11940898 | MS.gene27965:intron | 50.0% | |
| ATTACCTCTGTTCCTCCACC+TGG | - | chr4.4:11939786-11939805 | MS.gene27965:intron | 50.0% | |
| ATTTGTAGGAAGGCGGAAGG+AGG | + | chr4.4:11942474-11942493 | None:intergenic | 50.0% | |
| CAGCCAAACCGTGTTTACCA+AGG | + | chr4.4:11940532-11940551 | None:intergenic | 50.0% | |
| CCAAATGACCCCCATGCAAA+AGG | + | chr4.4:11940874-11940893 | None:intergenic | 50.0% | |
| CCAATCTCAGAGCCAAACAG+TGG | - | chr4.4:11943519-11943538 | MS.gene27965:intron | 50.0% | |
| CCTTTCACAAGCATAGGAGC+CGG | + | chr4.4:11941143-11941162 | None:intergenic | 50.0% | |
| CGTCTTATGTTCCTGGGAAG+AGG | - | chr4.4:11941354-11941373 | MS.gene27965:intron | 50.0% | |
| CGTTCCGAAATCCTCGTGTA+CGG | - | chr4.4:11940244-11940263 | MS.gene27965:intron | 50.0% | |
| CTTATGTTCCTGGGAAGAGG+CGG | - | chr4.4:11941357-11941376 | MS.gene27965:intron | 50.0% | |
| CTTTCACAAGCATAGGAGCC+GGG | + | chr4.4:11941142-11941161 | None:intergenic | 50.0% | |
| GAGCCTTGGTAAACACGGTT+TGG | - | chr4.4:11940526-11940545 | MS.gene27965:intron | 50.0% | |
| GGATAAGAGGCAATGGAAGG+GGG | - | chr4.4:11940342-11940361 | MS.gene27965:intron | 50.0% | |
| GGCATATAAGTCGGGTTTGC+AGG | + | chr4.4:11942818-11942837 | None:intergenic | 50.0% | |
| TACTGATGTTCCTGCAGGGA+TGG | - | chr4.4:11939943-11939962 | MS.gene27965:intron | 50.0% | |
| TAGGACGACGTAGACACGAA+TGG | + | chr4.4:11942703-11942722 | None:intergenic | 50.0% | |
| TCCCTGCAGGAACATCAGTA+CGG | + | chr4.4:11939943-11939962 | None:intergenic | 50.0% | |
| TGAGACATATCCATCCCTGC+AGG | + | chr4.4:11939956-11939975 | None:intergenic | 50.0% | |
| TTTCCAAAAAGGTGGCAGCC+CGG | - | chr4.4:11941121-11941140 | MS.gene27965:intron | 50.0% | |
| TTTGTAGGAAGGCGGAAGGA+GGG | + | chr4.4:11942473-11942492 | None:intergenic | 50.0% | |
| ! | ACCGTACTGATGTTCCTGCA+GGG | - | chr4.4:11939939-11939958 | MS.gene27965:intron | 50.0% |
| ! | ACGGGATTCCTTTTGCATGG+GGG | - | chr4.4:11940863-11940882 | MS.gene27965:intron | 50.0% |
| ! | ATCCTCGTGTACGGATTACC+AGG | - | chr4.4:11940253-11940272 | MS.gene27965:intron | 50.0% |
| ! | CAAACATTGGTTGCCCCTCT+AGG | + | chr4.4:11939747-11939766 | None:intergenic | 50.0% |
| ! | CCTTTTGCATGGGGGTCATT+TGG | - | chr4.4:11940871-11940890 | MS.gene27965:intron | 50.0% |
| ! | TACCGTACTGATGTTCCTGC+AGG | - | chr4.4:11939938-11939957 | MS.gene27965:intron | 50.0% |
| ! | TCCTCGTGTACGGATTACCA+GGG | - | chr4.4:11940254-11940273 | MS.gene27965:intron | 50.0% |
| !! | AACCCACTGGCTCCAATAAC+TGG | - | chr4.4:11941071-11941090 | MS.gene27965:intron | 50.0% |
| !! | CCACTGTTTGGCTCTGAGAT+TGG | + | chr4.4:11943522-11943541 | None:intergenic | 50.0% |
| !! | GAGATTGGGGCATTGACTGT+AGG | + | chr4.4:11943507-11943526 | None:intergenic | 50.0% |
| AAGTAGCCCATGTCCCTTGC+GGG | - | chr4.4:11942085-11942104 | MS.gene27965:intron | 55.0% | |
| ACCTCATGGGACAACCGACT+CGG | - | chr4.4:11943342-11943361 | MS.gene27965:intron | 55.0% | |
| CAAGTAGCCCATGTCCCTTG+CGG | - | chr4.4:11942084-11942103 | MS.gene27965:intron | 55.0% | |
| CCGGCTCCTATGCTTGTGAA+AGG | - | chr4.4:11941140-11941159 | MS.gene27965:intron | 55.0% | |
| CTTACCAGGTGGAGGAACAG+AGG | + | chr4.4:11939793-11939812 | None:intergenic | 55.0% | |
| GTCCCATGAGGTCTATGACC+AGG | + | chr4.4:11943334-11943353 | None:intergenic | 55.0% | |
| GTGAGAAACCACCATCCCGT+CGG | + | chr4.4:11940393-11940412 | None:intergenic | 55.0% | |
| GTTTGGTTGTTTGGCCCGAC+GGG | - | chr4.4:11940375-11940394 | MS.gene27965:intron | 55.0% | |
| TGAGAAACCACCATCCCGTC+GGG | + | chr4.4:11940392-11940411 | None:intergenic | 55.0% | |
| TGGGGGTCATTTGGCTACTC+GGG | - | chr4.4:11940880-11940899 | MS.gene27965:intron | 55.0% | |
| TTGTAGGAAGGCGGAAGGAG+GGG | + | chr4.4:11942472-11942491 | None:intergenic | 55.0% | |
| ! | CCTCGTGTACGGATTACCAG+GGG | - | chr4.4:11940255-11940274 | MS.gene27965:intron | 55.0% |
| ! | CTCGTGTACGGATTACCAGG+GGG | - | chr4.4:11940256-11940275 | MS.gene27965:intron | 55.0% |
| ! | GAACAGCGTTGGAGCTTACC+AGG | + | chr4.4:11939807-11939826 | None:intergenic | 55.0% |
| ! | GGTTTGGTTGTTTGGCCCGA+CGG | - | chr4.4:11940374-11940393 | MS.gene27965:intron | 55.0% |
| ATGTCCCTTGCGGGAACTGC+CGG | - | chr4.4:11942094-11942113 | MS.gene27965:intron | 60.0% | |
| CCCCTGGTAATCCGTACACG+AGG | + | chr4.4:11940258-11940277 | None:intergenic | 60.0% | |
| CGTTGGAGCTTACCAGGTGG+AGG | + | chr4.4:11939801-11939820 | None:intergenic | 60.0% | |
| GCAGTTCCCGCAAGGGACAT+GGG | + | chr4.4:11942094-11942113 | None:intergenic | 60.0% | |
| TGTAGGAAGGCGGAAGGAGG+GGG | + | chr4.4:11942471-11942490 | None:intergenic | 60.0% | |
| TTGTCCGGCAGTTCCCGCAA+GGG | + | chr4.4:11942101-11942120 | None:intergenic | 60.0% | |
| ! | ATTGGAGCCAGTGGGTTCGC+AGG | + | chr4.4:11941068-11941087 | None:intergenic | 60.0% |
| ! | CAGCGTTGGAGCTTACCAGG+TGG | + | chr4.4:11939804-11939823 | None:intergenic | 60.0% |
| ! | CCTCATGGGACAACCGACTC+GGG | - | chr4.4:11943343-11943362 | MS.gene27965:intron | 60.0% |
| ! | TTGGAGCCAGTGGGTTCGCA+GGG | + | chr4.4:11941067-11941086 | None:intergenic | 60.0% |
| AGCAAGCCCTGCGAACCCAC+TGG | - | chr4.4:11941058-11941077 | MS.gene27965:intron | 65.0% | |
| CCCGAGTCGGTTGTCCCATG+AGG | + | chr4.4:11943346-11943365 | None:intergenic | 65.0% | |
| GGCAGTTCCCGCAAGGGACA+TGG | + | chr4.4:11942095-11942114 | None:intergenic | 65.0% | |
| GGTTGTTTGGCCCGACGGGA+TGG | - | chr4.4:11940379-11940398 | MS.gene27965:intron | 65.0% | |
| GTTGTCCGGCAGTTCCCGCA+AGG | + | chr4.4:11942102-11942121 | None:intergenic | 65.0% | |
| TGTTTGGCCCGACGGGATGG+TGG | - | chr4.4:11940382-11940401 | MS.gene27965:intron | 65.0% | |
| ! | GAGCCGGGCTGCCACCTTTT+TGG | + | chr4.4:11941127-11941146 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11939696 | 11943742 | 11939696 | ID=MS.gene27965 |
| chr4.4 | mRNA | 11939696 | 11943742 | 11939696 | ID=MS.gene27965.t1;Parent=MS.gene27965 |
| chr4.4 | exon | 11943631 | 11943742 | 11943631 | ID=MS.gene27965.t1.exon1;Parent=MS.gene27965.t1 |
| chr4.4 | CDS | 11943631 | 11943742 | 11943631 | ID=cds.MS.gene27965.t1;Parent=MS.gene27965.t1 |
| chr4.4 | exon | 11943368 | 11943478 | 11943368 | ID=MS.gene27965.t1.exon2;Parent=MS.gene27965.t1 |
| chr4.4 | CDS | 11943368 | 11943478 | 11943368 | ID=cds.MS.gene27965.t1;Parent=MS.gene27965.t1 |
| chr4.4 | exon | 11941250 | 11941362 | 11941250 | ID=MS.gene27965.t1.exon3;Parent=MS.gene27965.t1 |
| chr4.4 | CDS | 11941250 | 11941362 | 11941250 | ID=cds.MS.gene27965.t1;Parent=MS.gene27965.t1 |
| chr4.4 | exon | 11940051 | 11940131 | 11940051 | ID=MS.gene27965.t1.exon4;Parent=MS.gene27965.t1 |
| chr4.4 | CDS | 11940051 | 11940131 | 11940051 | ID=cds.MS.gene27965.t1;Parent=MS.gene27965.t1 |
| chr4.4 | exon | 11939856 | 11939927 | 11939856 | ID=MS.gene27965.t1.exon5;Parent=MS.gene27965.t1 |
| chr4.4 | CDS | 11939856 | 11939927 | 11939856 | ID=cds.MS.gene27965.t1;Parent=MS.gene27965.t1 |
| chr4.4 | exon | 11939696 | 11939737 | 11939696 | ID=MS.gene27965.t1.exon6;Parent=MS.gene27965.t1 |
| chr4.4 | CDS | 11939696 | 11939737 | 11939696 | ID=cds.MS.gene27965.t1;Parent=MS.gene27965.t1 |
| Gene Sequence |
| Protein sequence |
