Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28704.t1 | XP_003607270.1 | 97.4 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 3.70E-93 | 350.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28704.t1 | Q9Y3E5 | 55.3 | 132 | 55 | 2 | 62 | 189 | 47 | 178 | 1.9e-29 | 130.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28704.t1 | G7JPK0 | 97.4 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 2.7e-93 | 350.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052268 | MS.gene28704 | 0.873063 | 1.96E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28704 | MS.gene91826 | PPI |
| MS.gene28704 | MS.gene78764 | PPI |
| MS.gene43071 | MS.gene28704 | PPI |
| MS.gene28704 | MS.gene053952 | PPI |
| MS.gene042719 | MS.gene28704 | PPI |
| MS.gene28704 | MS.gene35379 | PPI |
| MS.gene073078 | MS.gene28704 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28704.t1 | MTR_4g075280 | 97.368 | 190 | 5 | 0 | 1 | 190 | 1 | 190 | 1.04e-135 | 377 |
| MS.gene28704.t1 | MTR_3g109700 | 45.865 | 133 | 68 | 3 | 60 | 190 | 63 | 193 | 9.34e-34 | 119 |
| MS.gene28704.t1 | MTR_3g109700 | 44.444 | 108 | 57 | 2 | 57 | 163 | 60 | 165 | 9.22e-26 | 97.8 |
| MS.gene28704.t1 | MTR_3g109700 | 44.860 | 107 | 56 | 2 | 57 | 162 | 60 | 164 | 2.48e-25 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28704.t1 | AT5G16870 | 69.474 | 190 | 37 | 4 | 1 | 190 | 1 | 169 | 4.62e-86 | 251 |
| MS.gene28704.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 7.16e-80 | 236 |
| MS.gene28704.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 7.16e-80 | 236 |
| MS.gene28704.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 7.16e-80 | 236 |
| MS.gene28704.t1 | AT3G03010 | 61.719 | 128 | 36 | 2 | 17 | 142 | 15 | 131 | 1.72e-45 | 147 |
| MS.gene28704.t1 | AT3G03010 | 61.719 | 128 | 36 | 2 | 17 | 142 | 15 | 131 | 1.72e-45 | 147 |
| MS.gene28704.t1 | AT4G32900 | 48.718 | 117 | 59 | 1 | 75 | 190 | 77 | 193 | 6.50e-34 | 119 |
| MS.gene28704.t1 | AT4G32900 | 45.556 | 90 | 49 | 0 | 75 | 164 | 77 | 166 | 1.98e-24 | 94.4 |
| MS.gene28704.t1 | AT4G32900 | 45.556 | 90 | 49 | 0 | 75 | 164 | 77 | 166 | 1.98e-24 | 94.4 |
| MS.gene28704.t1 | AT4G32900 | 46.875 | 64 | 34 | 0 | 75 | 138 | 77 | 140 | 4.41e-16 | 72.0 |
Find 30 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTTGGTCTTTGATTT+TGG | 0.042547 | 4.2:-33514640 | None:intergenic |
| TGTTAGAAATGATCTTAAAA+TGG | 0.178309 | 4.2:+33514796 | MS.gene28704:CDS |
| CTTGCTTTGGGTTACTTCAT+TGG | 0.226259 | 4.2:+33514510 | MS.gene28704:CDS |
| GTCATGGTTGAGTGCAATTT+TGG | 0.265900 | 4.2:+33514473 | MS.gene28704:CDS |
| TGGTGCTGGTTATCTTGCTT+TGG | 0.338108 | 4.2:+33514497 | MS.gene28704:CDS |
| GGTGCTGGTTATCTTGCTTT+GGG | 0.344764 | 4.2:+33514498 | MS.gene28704:CDS |
| AACATTGGGTCTCTACAAAA+AGG | 0.347125 | 4.2:+33515376 | MS.gene28704:CDS |
| CATTACCTATTTAAAGCCTT+TGG | 0.351201 | 4.2:-33515413 | None:intergenic |
| GAGAATTGCCATCACCGTTC+TGG | 0.354128 | 4.2:-33517543 | None:intergenic |
| GAGCTCCAAAGGCTTTAAAT+AGG | 0.364463 | 4.2:+33515408 | MS.gene28704:CDS |
| GTTAGAAATGATCTTAAAAT+GGG | 0.382687 | 4.2:+33514797 | MS.gene28704:CDS |
| ACCTCATCTACCACTTCAAC+AGG | 0.458269 | 4.2:-33517681 | None:intergenic |
| TATTTAAAGCCTTTGGAGCT+CGG | 0.471485 | 4.2:-33515406 | None:intergenic |
| AATGATCTTAAAATGGGTAA+AGG | 0.501457 | 4.2:+33514803 | MS.gene28704:CDS |
| AGAACGGTGATGGCAATTCT+CGG | 0.504068 | 4.2:+33517545 | MS.gene28704:CDS |
| GAAAGATTGCAGCTCAATGC+AGG | 0.516623 | 4.2:+33514825 | MS.gene28704:CDS |
| GGAGATGTCTGCACAGCCTA+AGG | 0.521064 | 4.2:+33515519 | MS.gene28704:CDS |
| TGAAAGTGAAGAAGATATGC+TGG | 0.522958 | 4.2:+33515555 | MS.gene28704:CDS |
| TCTAGATTCCAGAACGGTGA+TGG | 0.534748 | 4.2:+33517535 | MS.gene28704:intron |
| ACTCATATCACAATTGATGC+TGG | 0.549551 | 4.2:+33516954 | MS.gene28704:CDS |
| GGTTCTTTACCGAGCTCCAA+AGG | 0.550602 | 4.2:+33515397 | MS.gene28704:CDS |
| GCATCAATTGTGATATGAGT+AGG | 0.570579 | 4.2:-33516951 | None:intergenic |
| GAAGTGGTAGATGAGGTAAC+AGG | 0.582781 | 4.2:+33517687 | MS.gene28704:CDS |
| CAAGCTGTTCAACCTCAAGT+TGG | 0.585211 | 4.2:-33514653 | None:intergenic |
| ACCTGTTGAAGTGGTAGATG+AGG | 0.590585 | 4.2:+33517680 | MS.gene28704:CDS |
| ATGTGCAGGACCTGTTGAAG+TGG | 0.631821 | 4.2:+33517671 | MS.gene28704:intron |
| GTTTCTTCTAGATTCCAGAA+CGG | 0.652178 | 4.2:+33517529 | MS.gene28704:intron |
| GTGGTAGATGAGGTAACAGG+TGG | 0.666083 | 4.2:+33517690 | MS.gene28704:CDS |
| TGATTGAAATGGAAATGTCA+TGG | 0.672695 | 4.2:+33514457 | None:intergenic |
| CAAAATCAAAGACCAACTTG+AGG | 0.704651 | 4.2:+33514641 | MS.gene28704:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATCCTTTTAATTTATT+AGG | + | chr4.2:33516195-33516214 | MS.gene28704:intron | 10.0% |
| !!! | TAAATATTGTTTGATTTTTA+GGG | + | chr4.2:33515587-33515606 | MS.gene28704:intron | 10.0% |
| !! | ATCCAGAAAAAAAATATAAA+CGG | + | chr4.2:33515311-33515330 | MS.gene28704:intron | 15.0% |
| !! | ATTAATCAAATGATATCATT+AGG | + | chr4.2:33516226-33516245 | MS.gene28704:intron | 15.0% |
| !! | TTAATCAATGAAAGTAAAAA+GGG | + | chr4.2:33515885-33515904 | MS.gene28704:intron | 15.0% |
| !! | TTATTATTCTAATAACACTA+TGG | + | chr4.2:33516458-33516477 | MS.gene28704:intron | 15.0% |
| !! | TTGACAAGAAAAAATATAAA+TGG | - | chr4.2:33517595-33517614 | None:intergenic | 15.0% |
| !! | TTTAATCAATGAAAGTAAAA+AGG | + | chr4.2:33515884-33515903 | MS.gene28704:intron | 15.0% |
| !!! | AATTACTAGCTTTATTTTAA+TGG | + | chr4.2:33514735-33514754 | MS.gene28704:intron | 15.0% |
| !!! | AGGATATTTTTCTTTTAATT+TGG | - | chr4.2:33516184-33516203 | None:intergenic | 15.0% |
| !!! | ATTACTAGCTTTATTTTAAT+GGG | + | chr4.2:33514736-33514755 | MS.gene28704:intron | 15.0% |
| !!! | GTAAATATTGTTTGATTTTT+AGG | + | chr4.2:33515586-33515605 | MS.gene28704:intron | 15.0% |
| !!! | TTTTTTTTAATGCTACTATA+AGG | - | chr4.2:33517095-33517114 | None:intergenic | 15.0% |
| !! | AAAGAGAACATAGTTAATAT+TGG | - | chr4.2:33515622-33515641 | None:intergenic | 20.0% |
| !! | AATCAATTAACAAGAAGATA+AGG | - | chr4.2:33517018-33517037 | None:intergenic | 20.0% |
| !! | ACTTAAATATCTCCAAAATT+AGG | + | chr4.2:33516798-33516817 | MS.gene28704:intron | 20.0% |
| !! | ATCAATTAACAAGAAGATAA+GGG | - | chr4.2:33517017-33517036 | None:intergenic | 20.0% |
| !! | CTAAGCAATAATAATCTATT+TGG | - | chr4.2:33515167-33515186 | None:intergenic | 20.0% |
| !! | GTTAGAAATGATCTTAAAAT+GGG | + | chr4.2:33514797-33514816 | MS.gene28704:CDS | 20.0% |
| !! | TCAAATATGTCAATCTAATT+AGG | + | chr4.2:33515110-33515129 | MS.gene28704:intron | 20.0% |
| !! | TGTTAGAAATGATCTTAAAA+TGG | + | chr4.2:33514796-33514815 | MS.gene28704:CDS | 20.0% |
| !! | TTATATTCAAAGTTGAAACT+TGG | + | chr4.2:33515959-33515978 | MS.gene28704:intron | 20.0% |
| !! | TTTCAGCCTAATAAATTAAA+AGG | - | chr4.2:33516204-33516223 | None:intergenic | 20.0% |
| !!! | AAAAAAGTATAGCATAAACA+AGG | + | chr4.2:33516616-33516635 | MS.gene28704:intron | 20.0% |
| !!! | AACGTCTTTTATTATTGTAA+AGG | + | chr4.2:33516512-33516531 | MS.gene28704:intron | 20.0% |
| !!! | TTTACTTTCATTGATTAAAC+AGG | - | chr4.2:33515883-33515902 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTATTTTTCTCC+TGG | - | chr4.2:33515784-33515803 | None:intergenic | 20.0% |
| ! | AAACTTCAATGTATAAGATG+AGG | - | chr4.2:33517267-33517286 | None:intergenic | 25.0% |
| ! | AATGATCTTAAAATGGGTAA+AGG | + | chr4.2:33514803-33514822 | MS.gene28704:CDS | 25.0% |
| ! | AATGTATAAGATGAGGATAA+TGG | - | chr4.2:33517260-33517279 | None:intergenic | 25.0% |
| ! | ACAACAAGTATCTACAAAAA+AGG | - | chr4.2:33514779-33514798 | None:intergenic | 25.0% |
| ! | ACACCAAATAAACACTATTA+TGG | + | chr4.2:33515711-33515730 | MS.gene28704:intron | 25.0% |
| ! | AGGTAAAATTTCCAATTATG+TGG | - | chr4.2:33517056-33517075 | None:intergenic | 25.0% |
| ! | ATAAATGGTCATTCTATTAG+AGG | - | chr4.2:33517580-33517599 | None:intergenic | 25.0% |
| ! | ATATCATTAGGATTATGTCT+AGG | + | chr4.2:33516238-33516257 | MS.gene28704:intron | 25.0% |
| ! | ATGCAAATTGTCATGTATAT+TGG | + | chr4.2:33517135-33517154 | MS.gene28704:intron | 25.0% |
| ! | ATTTCAGATCTAATTGTACA+TGG | - | chr4.2:33517192-33517211 | None:intergenic | 25.0% |
| ! | CAACCATAATAGTGTTTATT+TGG | - | chr4.2:33515717-33515736 | None:intergenic | 25.0% |
| ! | CAACGAAAAAACAAAAGAAA+AGG | - | chr4.2:33517428-33517447 | None:intergenic | 25.0% |
| ! | CTTTAAATAGGTAATGTCAT+TGG | + | chr4.2:33515420-33515439 | MS.gene28704:intron | 25.0% |
| ! | GCAATAATAATCTATTTGGA+AGG | - | chr4.2:33515163-33515182 | None:intergenic | 25.0% |
| ! | TTTGTATCTGTATGATATGA+AGG | + | chr4.2:33517459-33517478 | MS.gene28704:intron | 25.0% |
| !! | AACATGAAAGAACCTAATTT+TGG | - | chr4.2:33516813-33516832 | None:intergenic | 25.0% |
| !! | AATGAGTTGAAAACAGTTTA+TGG | + | chr4.2:33515018-33515037 | MS.gene28704:intron | 25.0% |
| !! | AGGCAAAAAATAGTAGATTT+TGG | + | chr4.2:33515825-33515844 | MS.gene28704:intron | 25.0% |
| !! | AGGGATGTATATTTCATTTT+AGG | - | chr4.2:33517237-33517256 | None:intergenic | 25.0% |
| !! | ATAAGCTCAGTTAGATATTT+TGG | + | chr4.2:33516554-33516573 | MS.gene28704:intron | 25.0% |
| !! | GGATGTATATTTCATTTTAG+GGG | - | chr4.2:33517235-33517254 | None:intergenic | 25.0% |
| !! | GGGATGTATATTTCATTTTA+GGG | - | chr4.2:33517236-33517255 | None:intergenic | 25.0% |
| !! | TACAAAAGCTATCTTTAGAA+AGG | - | chr4.2:33516879-33516898 | None:intergenic | 25.0% |
| !!! | GACCGTTTATATTTTTTTTC+TGG | - | chr4.2:33515316-33515335 | None:intergenic | 25.0% |
| !!! | TATTCTCGAAGATTTTAAGA+TGG | + | chr4.2:33514680-33514699 | MS.gene28704:CDS | 25.0% |
| AAAATAGTCCAACCTATTAG+AGG | - | chr4.2:33516674-33516693 | None:intergenic | 30.0% | |
| AAATTGTCATGTATATTGGC+TGG | + | chr4.2:33517139-33517158 | MS.gene28704:intron | 30.0% | |
| AAGCACTTACGATATTTGTT+TGG | - | chr4.2:33515074-33515093 | None:intergenic | 30.0% | |
| ACTAACACTGCAATCATATT+AGG | + | chr4.2:33516001-33516020 | MS.gene28704:intron | 30.0% | |
| AGCACTTACGATATTTGTTT+GGG | - | chr4.2:33515073-33515092 | None:intergenic | 30.0% | |
| ATACGTAGCAGTGTATAATT+TGG | + | chr4.2:33516086-33516105 | MS.gene28704:intron | 30.0% | |
| ATACTTGTAGAAACTGTCTA+AGG | + | chr4.2:33515857-33515876 | MS.gene28704:intron | 30.0% | |
| ATTTAAGTGAACTATGGAAG+AGG | - | chr4.2:33516786-33516805 | None:intergenic | 30.0% | |
| CTATATGCAATGAAAAGCAA+GGG | + | chr4.2:33516336-33516355 | MS.gene28704:intron | 30.0% | |
| CTGTTTCAAAAGAAATGTTG+TGG | + | chr4.2:33516032-33516051 | MS.gene28704:intron | 30.0% | |
| GGAGATATTTAAGTGAACTA+TGG | - | chr4.2:33516792-33516811 | None:intergenic | 30.0% | |
| TACGTAGCAGTGTATAATTT+GGG | + | chr4.2:33516087-33516106 | MS.gene28704:intron | 30.0% | |
| TGTAATGTTCTCCACATAAT+TGG | + | chr4.2:33517042-33517061 | MS.gene28704:intron | 30.0% | |
| TTATTGTAAAGGAACTCTTG+TGG | + | chr4.2:33516523-33516542 | MS.gene28704:intron | 30.0% | |
| TTCTGGATTAAAAACAGAAC+AGG | - | chr4.2:33515299-33515318 | None:intergenic | 30.0% | |
| TTGTTTGGATAAGCACTTAA+TGG | + | chr4.2:33514878-33514897 | MS.gene28704:intron | 30.0% | |
| ! | AATTGTCATGTATATTGGCT+GGG | + | chr4.2:33517140-33517159 | MS.gene28704:intron | 30.0% |
| ! | ATCCTTTTGACATTTGAACT+AGG | + | chr4.2:33515805-33515824 | MS.gene28704:intron | 30.0% |
| ! | ATTTTGTAGTCATGCAACAT+TGG | + | chr4.2:33515361-33515380 | MS.gene28704:intron | 30.0% |
| ! | CATTACCTATTTAAAGCCTT+TGG | - | chr4.2:33515416-33515435 | None:intergenic | 30.0% |
| ! | CTCATTTTCATTACTTATCC+AGG | - | chr4.2:33515004-33515023 | None:intergenic | 30.0% |
| ! | GGTGTTAATTTGATCTTGTT+TGG | + | chr4.2:33514863-33514882 | MS.gene28704:intron | 30.0% |
| ! | TTTTGTAGTCATGCAACATT+GGG | + | chr4.2:33515362-33515381 | MS.gene28704:intron | 30.0% |
| !! | AACACTATTATGGTTGCTTT+TGG | + | chr4.2:33515721-33515740 | MS.gene28704:intron | 30.0% |
| !! | TATAAGATGAGGATAATGGA+GGG | - | chr4.2:33517256-33517275 | None:intergenic | 30.0% |
| !! | TCAATTTTGACAACAACCTT+AGG | - | chr4.2:33515538-33515557 | None:intergenic | 30.0% |
| !! | TTGGGCTTTAAACAATGATT+GGG | + | chr4.2:33516105-33516124 | MS.gene28704:intron | 30.0% |
| !! | TTTGGGCTTTAAACAATGAT+TGG | + | chr4.2:33516104-33516123 | MS.gene28704:intron | 30.0% |
| !!! | CACAGTTTTAGACAATACAA+AGG | - | chr4.2:33517353-33517372 | None:intergenic | 30.0% |
| !!! | TAGATATTTTGGTAATCTGC+CGG | + | chr4.2:33516565-33516584 | MS.gene28704:intron | 30.0% |
| !!! | TCAAGTTGGTCTTTGATTTT+GGG | - | chr4.2:33514642-33514661 | None:intergenic | 30.0% |
| AACATTGGGTCTCTACAAAA+AGG | + | chr4.2:33515376-33515395 | MS.gene28704:CDS | 35.0% | |
| AAGGCAGTAAAATAACACAC+AGG | - | chr4.2:33517076-33517095 | None:intergenic | 35.0% | |
| ACATATTTGAGCTTACCTAC+AGG | - | chr4.2:33515100-33515119 | None:intergenic | 35.0% | |
| ACTCATATCACAATTGATGC+TGG | + | chr4.2:33516954-33516973 | MS.gene28704:CDS | 35.0% | |
| ATACTGTCAGAACCTCTAAT+AGG | + | chr4.2:33516659-33516678 | MS.gene28704:intron | 35.0% | |
| CAAAATCAAAGACCAACTTG+AGG | + | chr4.2:33514641-33514660 | MS.gene28704:CDS | 35.0% | |
| CAATGCAAGACATGAAACTT+AGG | + | chr4.2:33515922-33515941 | MS.gene28704:intron | 35.0% | |
| CTTTAAACAATGATTGGGCA+GGG | + | chr4.2:33516110-33516129 | MS.gene28704:intron | 35.0% | |
| GCATCAATTGTGATATGAGT+AGG | - | chr4.2:33516954-33516973 | None:intergenic | 35.0% | |
| GCTATATGCAATGAAAAGCA+AGG | + | chr4.2:33516335-33516354 | MS.gene28704:intron | 35.0% | |
| GTTTCTTCTAGATTCCAGAA+CGG | + | chr4.2:33517529-33517548 | MS.gene28704:intron | 35.0% | |
| TATTTGTTTGGGAGAGCTTA+TGG | - | chr4.2:33515062-33515081 | None:intergenic | 35.0% | |
| TGAAAGTGAAGAAGATATGC+TGG | + | chr4.2:33515555-33515574 | MS.gene28704:CDS | 35.0% | |
| TGCAGGTATGTAATCTTTGT+TGG | + | chr4.2:33514842-33514861 | MS.gene28704:intron | 35.0% | |
| TGCCTAGTTCAAATGTCAAA+AGG | - | chr4.2:33515810-33515829 | None:intergenic | 35.0% | |
| TGTTGTTCTATAAGCTATCC+TGG | + | chr4.2:33514983-33515002 | MS.gene28704:intron | 35.0% | |
| TTAACATGATGTTCATGTGC+AGG | + | chr4.2:33517657-33517676 | MS.gene28704:intron | 35.0% | |
| ! | ACAAGAACAGTTCGTCTTTT+AGG | - | chr4.2:33516395-33516414 | None:intergenic | 35.0% |
| ! | CAAGAACAGTTCGTCTTTTA+GGG | - | chr4.2:33516394-33516413 | None:intergenic | 35.0% |
| ! | GTATAAGATGAGGATAATGG+AGG | - | chr4.2:33517257-33517276 | None:intergenic | 35.0% |
| ! | TTTTCTTCAGAAAGCAAGCA+TGG | - | chr4.2:33517313-33517332 | None:intergenic | 35.0% |
| !! | ATACTGTCTTTTGCTGTGTT+AGG | + | chr4.2:33516905-33516924 | MS.gene28704:intron | 35.0% |
| !! | GTTTTTCAATGTCAATGTGC+AGG | + | chr4.2:33515494-33515513 | MS.gene28704:intron | 35.0% |
| !! | TATTTAAAGCCTTTGGAGCT+CGG | - | chr4.2:33515409-33515428 | None:intergenic | 35.0% |
| !! | TCTTTTGCTGTGTTAGGAAA+GGG | + | chr4.2:33516911-33516930 | MS.gene28704:intron | 35.0% |
| !!! | ACTATTATGGTTGCTTTTGG+TGG | + | chr4.2:33515724-33515743 | MS.gene28704:intron | 35.0% |
| !!! | AGATATTTTGGTAATCTGCC+GGG | + | chr4.2:33516566-33516585 | MS.gene28704:intron | 35.0% |
| !!! | CTATTATGGTTGCTTTTGGT+GGG | + | chr4.2:33515725-33515744 | MS.gene28704:intron | 35.0% |
| !!! | CTCAAGTTGGTCTTTGATTT+TGG | - | chr4.2:33514643-33514662 | None:intergenic | 35.0% |
| AATGAAAAGCAAGGGAGAGT+AGG | + | chr4.2:33516344-33516363 | MS.gene28704:intron | 40.0% | |
| CATTAGGATTATGTCTAGGC+TGG | + | chr4.2:33516242-33516261 | MS.gene28704:intron | 40.0% | |
| GATTGCTCCAAGTGAGTATT+TGG | + | chr4.2:33516986-33517005 | MS.gene28704:intron | 40.0% | |
| GGTAGTTCCAAATACTCACT+TGG | - | chr4.2:33516996-33517015 | None:intergenic | 40.0% | |
| GTGGCTGATTAATCATTGTG+AGG | + | chr4.2:33516051-33516070 | MS.gene28704:intron | 40.0% | |
| TAGCCTAGTGATTTACATCC+CGG | - | chr4.2:33516587-33516606 | None:intergenic | 40.0% | |
| TGCTTAGATTGCGACATTCT+AGG | + | chr4.2:33515180-33515199 | MS.gene28704:intron | 40.0% | |
| TGTAAAGGAACTCTTGTGGA+AGG | + | chr4.2:33516527-33516546 | MS.gene28704:intron | 40.0% | |
| TGTCAGAACCTCTAATAGGT+TGG | + | chr4.2:33516663-33516682 | MS.gene28704:intron | 40.0% | |
| TTCAATGTCAATGTGCAGGT+GGG | + | chr4.2:33515498-33515517 | MS.gene28704:intron | 40.0% | |
| TTCAGAAAGCAAGCATGGAT+AGG | - | chr4.2:33517308-33517327 | None:intergenic | 40.0% | |
| TTTCAATGTCAATGTGCAGG+TGG | + | chr4.2:33515497-33515516 | MS.gene28704:intron | 40.0% | |
| ! | ATGTCATTGGTTGAGCTTGT+TGG | + | chr4.2:33515433-33515452 | MS.gene28704:intron | 40.0% |
| ! | CTTGCTTTGGGTTACTTCAT+TGG | + | chr4.2:33514510-33514529 | MS.gene28704:CDS | 40.0% |
| ! | GCTTTAAACAATGATTGGGC+AGG | + | chr4.2:33516109-33516128 | MS.gene28704:intron | 40.0% |
| ! | GTCATGGTTGAGTGCAATTT+TGG | + | chr4.2:33514473-33514492 | MS.gene28704:CDS | 40.0% |
| !! | CATACTTGCTTGCTGTACAT+TGG | + | chr4.2:33515666-33515685 | MS.gene28704:intron | 40.0% |
| !! | GAGCTCCAAAGGCTTTAAAT+AGG | + | chr4.2:33515408-33515427 | MS.gene28704:CDS | 40.0% |
| !! | GTCTTTTGCTGTGTTAGGAA+AGG | + | chr4.2:33516910-33516929 | MS.gene28704:intron | 40.0% |
| !! | TGGATAGGCATTTTCAAGCA+TGG | - | chr4.2:33517293-33517312 | None:intergenic | 40.0% |
| !! | TGGTTGAGTGCAATTTTGGT+TGG | + | chr4.2:33514477-33514496 | MS.gene28704:CDS | 40.0% |
| AAACAATGATTGGGCAGGGA+GGG | + | chr4.2:33516114-33516133 | MS.gene28704:intron | 45.0% | |
| ACCTCATCTACCACTTCAAC+AGG | - | chr4.2:33517684-33517703 | None:intergenic | 45.0% | |
| ACCTGTTGAAGTGGTAGATG+AGG | + | chr4.2:33517680-33517699 | MS.gene28704:CDS | 45.0% | |
| ACTAGAGAAGTTCAGCAACC+AGG | + | chr4.2:33515763-33515782 | MS.gene28704:intron | 45.0% | |
| CAAGCTGTTCAACCTCAAGT+TGG | - | chr4.2:33514656-33514675 | None:intergenic | 45.0% | |
| GAAAGATTGCAGCTCAATGC+AGG | + | chr4.2:33514825-33514844 | MS.gene28704:CDS | 45.0% | |
| GAAGTGGTAGATGAGGTAAC+AGG | + | chr4.2:33517687-33517706 | MS.gene28704:CDS | 45.0% | |
| TAAACAATGATTGGGCAGGG+AGG | + | chr4.2:33516113-33516132 | MS.gene28704:intron | 45.0% | |
| TCGTAAGTGCTTATGCCTGT+AGG | + | chr4.2:33515082-33515101 | MS.gene28704:intron | 45.0% | |
| TCTAGATTCCAGAACGGTGA+TGG | + | chr4.2:33517535-33517554 | MS.gene28704:intron | 45.0% | |
| TGCAGTGTTAGTGAGCATAG+AGG | - | chr4.2:33515993-33516012 | None:intergenic | 45.0% | |
| ! | AGAACGGTGATGGCAATTCT+CGG | + | chr4.2:33517545-33517564 | MS.gene28704:CDS | 45.0% |
| !! | GAACAGTTCGTCTTTTAGGG+TGG | - | chr4.2:33516391-33516410 | None:intergenic | 45.0% |
| !! | GGTGCTGGTTATCTTGCTTT+GGG | + | chr4.2:33514498-33514517 | MS.gene28704:CDS | 45.0% |
| !! | TGGTGCTGGTTATCTTGCTT+TGG | + | chr4.2:33514497-33514516 | MS.gene28704:CDS | 45.0% |
| !!! | AGTGCAATTTTGGTTGGTGC+TGG | + | chr4.2:33514483-33514502 | MS.gene28704:CDS | 45.0% |
| !!! | AAATAAAATTTAAGATAAAA+TGG | - | chr4.2:33516842-33516861 | None:intergenic | 5.0% |
| AACAATGATTGGGCAGGGAG+GGG | + | chr4.2:33516115-33516134 | MS.gene28704:intron | 50.0% | |
| AGATCCCTCATTCGCGTGAA+GGG | + | chr4.2:33515250-33515269 | MS.gene28704:intron | 50.0% | |
| ATGTGCAGGACCTGTTGAAG+TGG | + | chr4.2:33517671-33517690 | MS.gene28704:intron | 50.0% | |
| CTGCCGGGATGTAAATCACT+AGG | + | chr4.2:33516581-33516600 | MS.gene28704:intron | 50.0% | |
| GAGAATTGCCATCACCGTTC+TGG | - | chr4.2:33517546-33517565 | None:intergenic | 50.0% | |
| GGTTCTTTACCGAGCTCCAA+AGG | + | chr4.2:33515397-33515416 | MS.gene28704:CDS | 50.0% | |
| GTGGTAGATGAGGTAACAGG+TGG | + | chr4.2:33517690-33517709 | MS.gene28704:CDS | 50.0% | |
| TTCACCCTTCACGCGAATGA+GGG | - | chr4.2:33515257-33515276 | None:intergenic | 50.0% | |
| GAGATCCCTCATTCGCGTGA+AGG | + | chr4.2:33515249-33515268 | MS.gene28704:intron | 55.0% | |
| GGAGATGTCTGCACAGCCTA+AGG | + | chr4.2:33515519-33515538 | MS.gene28704:CDS | 55.0% | |
| GTTCACCCTTCACGCGAATG+AGG | - | chr4.2:33515258-33515277 | None:intergenic | 55.0% | |
| GATTGGGCAGGGAGGGGAAG+TGG | + | chr4.2:33516121-33516140 | MS.gene28704:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 33514465 | 33517728 | 33514465 | ID=MS.gene28704 |
| chr4.2 | mRNA | 33514465 | 33517728 | 33514465 | ID=MS.gene28704.t1;Parent=MS.gene28704 |
| chr4.2 | exon | 33514465 | 33514701 | 33514465 | ID=MS.gene28704.t1.exon1;Parent=MS.gene28704.t1 |
| chr4.2 | CDS | 33514465 | 33514701 | 33514465 | ID=cds.MS.gene28704.t1;Parent=MS.gene28704.t1 |
| chr4.2 | exon | 33514788 | 33514846 | 33514788 | ID=MS.gene28704.t1.exon2;Parent=MS.gene28704.t1 |
| chr4.2 | CDS | 33514788 | 33514846 | 33514788 | ID=cds.MS.gene28704.t1;Parent=MS.gene28704.t1 |
| chr4.2 | exon | 33515370 | 33515429 | 33515370 | ID=MS.gene28704.t1.exon3;Parent=MS.gene28704.t1 |
| chr4.2 | CDS | 33515370 | 33515429 | 33515370 | ID=cds.MS.gene28704.t1;Parent=MS.gene28704.t1 |
| chr4.2 | exon | 33515516 | 33515585 | 33515516 | ID=MS.gene28704.t1.exon4;Parent=MS.gene28704.t1 |
| chr4.2 | CDS | 33515516 | 33515585 | 33515516 | ID=cds.MS.gene28704.t1;Parent=MS.gene28704.t1 |
| chr4.2 | exon | 33516927 | 33516996 | 33516927 | ID=MS.gene28704.t1.exon5;Parent=MS.gene28704.t1 |
| chr4.2 | CDS | 33516927 | 33516996 | 33516927 | ID=cds.MS.gene28704.t1;Parent=MS.gene28704.t1 |
| chr4.2 | exon | 33517540 | 33517566 | 33517540 | ID=MS.gene28704.t1.exon6;Parent=MS.gene28704.t1 |
| chr4.2 | CDS | 33517540 | 33517566 | 33517540 | ID=cds.MS.gene28704.t1;Parent=MS.gene28704.t1 |
| chr4.2 | exon | 33517679 | 33517728 | 33517679 | ID=MS.gene28704.t1.exon7;Parent=MS.gene28704.t1 |
| chr4.2 | CDS | 33517679 | 33517728 | 33517679 | ID=cds.MS.gene28704.t1;Parent=MS.gene28704.t1 |
| Gene Sequence |
| Protein sequence |
