AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28747


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28747.t1 MTR_4g094405 99.015 609 5 1 1 608 16 624 0.0 1249
MS.gene28747.t1 MTR_3g090170 23.792 559 350 21 23 560 22 525 4.06e-22 100
MS.gene28747.t1 MTR_4g023610 23.733 434 284 15 18 428 40 449 9.54e-22 100
MS.gene28747.t1 MTR_3g090170 25.059 423 266 14 23 427 22 411 1.68e-19 92.0
MS.gene28747.t1 MTR_4g102120 22.901 393 267 11 12 385 35 410 4.13e-18 88.6
MS.gene28747.t1 MTR_8g052140 92.308 39 3 0 33 71 35 73 1.30e-17 78.2
MS.gene28747.t1 MTR_5g011790 21.327 422 295 13 12 414 35 438 3.04e-16 82.4
MS.gene28747.t1 MTR_5g011790 21.327 422 295 13 12 414 35 438 4.10e-16 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28747.t1 AT2G17980 77.152 604 130 4 1 600 16 615 0.0 974
MS.gene28747.t1 AT4G31740 64.948 194 44 2 406 599 1 170 2.75e-76 240
MS.gene28747.t1 AT4G36100 65.185 135 40 3 371 504 107 235 1.03e-44 159
MS.gene28747.t1 AT4G12120 24.318 403 258 14 21 399 42 421 4.61e-21 98.2
MS.gene28747.t1 AT1G12360 21.483 391 274 9 12 385 33 407 1.43e-19 93.2
MS.gene28747.t1 AT1G77140 21.635 587 388 20 23 590 22 555 4.91e-19 91.3
MS.gene28747.t1 AT1G02010 22.274 431 296 15 13 428 4 410 6.74e-19 91.3
MS.gene28747.t1 AT1G02010 22.274 431 296 15 13 428 36 442 8.22e-19 90.9
MS.gene28747.t1 AT1G02010 22.274 431 296 15 13 428 36 442 8.90e-19 90.9
MS.gene28747.t1 AT1G02010 22.274 431 296 15 13 428 36 442 9.49e-19 90.9

Find 150 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACAATTGCTTCCTTAAA+TGG 0.132005 4.3:-19750169 None:intergenic
GTTGTTGTTGTTCCTGTTAT+TGG 0.201825 4.3:-19748570 None:intergenic
CCATTTAAAAGGTCCATTTA+AGG 0.245268 4.3:+19750156 MS.gene28747:CDS
GAGAATGACATGATGGTTAG+AGG 0.262303 4.3:+19749692 MS.gene28747:CDS
TGGATAGTGCTGATTCGTTT+TGG 0.273156 4.3:+19749384 MS.gene28747:CDS
CCTCCCAAGCATATTATATA+TGG 0.307162 4.3:+19750256 MS.gene28747:CDS
ATGCTTGAAGATCTTGCTTC+GGG 0.309638 4.3:+19748864 MS.gene28747:CDS
GCAAGTGGCAACCATTTAAA+AGG 0.326987 4.3:+19750145 MS.gene28747:CDS
TTGGTGTTGTTCCGGTCATT+AGG 0.336373 4.3:+19749087 MS.gene28747:CDS
TTGCGATTCAGCATGACTTT+AGG 0.340194 4.3:+19749273 MS.gene28747:CDS
GTAGAGCAGCTTACGTTGTT+GGG 0.345957 4.3:+19750310 MS.gene28747:CDS
TTGGGGAAGAAGATGGGTTT+GGG 0.355383 4.3:+19750328 MS.gene28747:CDS
TACATATCTGTCTCAGGATT+TGG 0.363551 4.3:-19750082 None:intergenic
CGTTGAACATTGGATTGAAT+TGG 0.365758 4.3:-19748768 None:intergenic
AATAATTTGTTTACTGAAGG+TGG 0.367485 4.3:+19749185 MS.gene28747:CDS
GATCCCCGTGCTCCTAAGTC+TGG 0.372753 4.3:+19750115 MS.gene28747:CDS
GATGCTTGAAGATCTTGCTT+CGG 0.373839 4.3:+19748863 MS.gene28747:CDS
ATTGTTGAGAGGATTGTTAA+TGG 0.385177 4.3:+19749041 MS.gene28747:CDS
GGCGACGCTTGGTGTTGTTC+CGG 0.385704 4.3:+19749079 MS.gene28747:CDS
TTCCTGTTATTGGTTGGTTT+AGG 0.389171 4.3:-19748560 None:intergenic
AACCTAAACCAACCAATAAC+AGG 0.402200 4.3:+19748558 MS.gene28747:CDS
TAGGTGTCCGCGTGGTGGGC+CGG 0.402954 4.3:+19749106 MS.gene28747:CDS
GACAGAATTTGTCGTAGATA+AGG 0.409373 4.3:-19748623 None:intergenic
GTTGGGGAAGAAGATGGGTT+TGG 0.412638 4.3:+19750327 MS.gene28747:CDS
AACATTGCTACTGTGTTGTT+GGG 0.414573 4.3:+19749629 MS.gene28747:CDS
GACTGGGCCGAGAAGCTCTA+TGG 0.415523 4.3:+19749959 MS.gene28747:CDS
TAACATTGCTACTGTGTTGT+TGG 0.421174 4.3:+19749628 MS.gene28747:CDS
TGCTTCGGGGACCATAGCTT+CGG 0.422216 4.3:+19748878 MS.gene28747:CDS
CGTGCTCCTAAGTCTGGTTC+AGG 0.428583 4.3:+19750121 MS.gene28747:CDS
GCGTGGTGGGCCGGCTGAGA+TGG 0.429236 4.3:+19749115 MS.gene28747:CDS
TTGAATAGGTTGAGTGTTCA+AGG 0.432954 4.3:+19749332 MS.gene28747:CDS
CGTTGGTTCATGATGTGCTT+GGG 0.434927 4.3:+19749303 MS.gene28747:CDS
AAACCGAAGCTTATCCATCT+TGG 0.435098 4.3:-19749762 None:intergenic
ATTTGGTCTCCCTTCAATCA+AGG 0.437182 4.3:-19750065 None:intergenic
CCGCGTTGGATCAAAGGATC+AGG 0.441656 4.3:+19749144 MS.gene28747:CDS
CTGTTGAAGCCTTGATTGAA+GGG 0.444683 4.3:+19750056 MS.gene28747:CDS
TGACTGTCCATAGAGCTTCT+CGG 0.445565 4.3:-19749966 None:intergenic
TTTGATGGGACGGATTTGAT+TGG 0.447772 4.3:+19749527 MS.gene28747:CDS
TGTAGAGCAGCTTACGTTGT+TGG 0.448636 4.3:+19750309 MS.gene28747:CDS
ACTGTTGAAGCCTTGATTGA+AGG 0.449353 4.3:+19750055 MS.gene28747:CDS
TTGAGTGTTCAAGGGGAGAA+AGG 0.451443 4.3:+19749341 MS.gene28747:CDS
TACGTTGTTGGGGAAGAAGA+TGG 0.452960 4.3:+19750321 MS.gene28747:CDS
AGATCTTTGACATGAATTAA+CGG 0.456244 4.3:-19748660 None:intergenic
TGTTAGTTCGTTTCAGAGGC+CGG 0.458725 4.3:+19749214 MS.gene28747:CDS
TGCTTGGGTTGAAGTTGAAT+AGG 0.461236 4.3:+19749318 MS.gene28747:CDS
AAGAATAATTTGTTTACTGA+AGG 0.466422 4.3:+19749182 MS.gene28747:CDS
GCAGAAGTAATATTGTTGAC+TGG 0.470359 4.3:+19749942 MS.gene28747:CDS
ATAATTTGTTTACTGAAGGT+GGG 0.472080 4.3:+19749186 MS.gene28747:CDS
TCAATCTCCACCGCAACCTC+AGG 0.475104 4.3:-19749431 None:intergenic
TGCGATGATTCGTTGAACAT+TGG 0.478197 4.3:-19748778 None:intergenic
TCATTAGGTGTCCGCGTGGT+GGG 0.478480 4.3:+19749102 MS.gene28747:CDS
AATCACGGTGCGGAGTTTGA+TGG 0.479706 4.3:+19749512 MS.gene28747:CDS
CGTTCCATATATAATATGCT+TGG 0.482424 4.3:-19750260 None:intergenic
CAACAATCTCCTCAATTTCA+CGG 0.487353 4.3:-19749025 None:intergenic
TTCAGCATGACTTTAGGTAT+AGG 0.487647 4.3:+19749279 MS.gene28747:CDS
AACTTCTCGGTGTGCTGAGA+GGG 0.491058 4.3:+19749732 MS.gene28747:CDS
GAACCAAGATGGATAAGCTT+CGG 0.493462 4.3:+19749759 MS.gene28747:CDS
CCGTTGGTTCATGATGTGCT+TGG 0.493871 4.3:+19749302 MS.gene28747:CDS
AAGTCATGCTGAATCGCAAC+CGG 0.494196 4.3:-19749269 None:intergenic
GTTCCATATATAATATGCTT+GGG 0.496796 4.3:-19750259 None:intergenic
AATCTTAATGATCCGTCTGC+TGG 0.498721 4.3:+19748999 MS.gene28747:CDS
TGCTTCCTCTCAGTCAGCTC+AGG 0.499034 4.3:-19749587 None:intergenic
AAGATGGGTTTGGGTAATGC+TGG 0.500440 4.3:+19750337 MS.gene28747:CDS
ACGGCGGGAACATCGTGAAC+GGG 0.500575 4.3:-19748732 None:intergenic
TAAGAGTCTGAATGTTTCGT+TGG 0.502406 4.3:+19749901 MS.gene28747:CDS
GTTGGAGTTTCCTGAGGTTG+CGG 0.502834 4.3:+19749421 MS.gene28747:CDS
GCGAGGTACATATCTGTCTC+AGG 0.503900 4.3:-19750088 None:intergenic
TGGCTACCGCGTTGGATCAA+AGG 0.505080 4.3:+19749138 MS.gene28747:CDS
ATCACGGTGCGGAGTTTGAT+GGG 0.508088 4.3:+19749513 MS.gene28747:CDS
CTCGGTGTGCTGAGAGGGAA+GGG 0.508637 4.3:+19749737 MS.gene28747:CDS
ATTGAAAGGAGTGAACTTCT+CGG 0.509013 4.3:+19749719 MS.gene28747:CDS
AATTGGTTGAACGAAATAAA+CGG 0.509297 4.3:-19748751 None:intergenic
TCCACAGCCTCCACTTCAGT+CGG 0.509720 4.3:-19749821 None:intergenic
CTTGCTCCTGAACCAGACTT+AGG 0.509749 4.3:-19750127 None:intergenic
CAGAAGTAATATTGTTGACT+GGG 0.512458 4.3:+19749943 MS.gene28747:CDS
GTGTTCAAGGGGAGAAAGGT+GGG 0.520944 4.3:+19749345 MS.gene28747:CDS
TTCGATTCAGCGAATTTCAA+AGG 0.521180 4.3:+19748902 MS.gene28747:CDS
TCCGACTGAAGTGGAGGCTG+TGG 0.522299 4.3:+19749820 MS.gene28747:CDS
TTGGGTTGCAAATGGTGGGT+TGG 0.524353 4.3:+19749403 MS.gene28747:CDS
AGTGTTCAAGGGGAGAAAGG+TGG 0.524971 4.3:+19749344 MS.gene28747:CDS
TTGTTGTTCCTGTTATTGGT+TGG 0.526111 4.3:-19748566 None:intergenic
GTCATTAGGTGTCCGCGTGG+TGG 0.527587 4.3:+19749101 MS.gene28747:CDS
ACGTTGTTGGGGAAGAAGAT+GGG 0.529725 4.3:+19750322 MS.gene28747:CDS
CATCATGTATCTGATTTCAT+CGG 0.529783 4.3:+19749787 MS.gene28747:CDS
TGAATAGGTTGAGTGTTCAA+GGG 0.531169 4.3:+19749333 MS.gene28747:CDS
CACATCTGAACTACTGAGGT+GGG 0.531717 4.3:-19750366 None:intergenic
GAGAGGGAAGGGAACCAAGA+TGG 0.533226 4.3:+19749748 MS.gene28747:CDS
TGGTTAGAGGGAGTATTGAA+AGG 0.535987 4.3:+19749705 MS.gene28747:CDS
TAGTGACAGACAGCTAGCTT+TGG 0.538193 4.3:+19750027 MS.gene28747:CDS
TGACTTTAGGTATAGGCCGT+TGG 0.538298 4.3:+19749286 MS.gene28747:CDS
TCTTGAGTTTGTTACACTTG+AGG 0.539068 4.3:+19748938 MS.gene28747:CDS
TGGGATGAGATCTTATGAGT+TGG 0.539391 4.3:+19749364 MS.gene28747:CDS
GCTTGATTCATATGCTAAGA+AGG 0.541789 4.3:+19749670 MS.gene28747:CDS
AGAATGACATGATGGTTAGA+GGG 0.546127 4.3:+19749693 MS.gene28747:CDS
CGATGAAATCAGATACATGA+TGG 0.547327 4.3:-19749786 None:intergenic
TGTGTTGTTGGGTGAGATCA+AGG 0.549244 4.3:+19749640 MS.gene28747:CDS
TGAACCAGACTTAGGAGCAC+GGG 0.551638 4.3:-19750119 None:intergenic
CTGAATCGAATCCGAAGCTA+TGG 0.553466 4.3:-19748889 None:intergenic
CGGTGCGGAGTTTGATGGGA+CGG 0.555506 4.3:+19749517 MS.gene28747:CDS
AACTATTAATCCGACTGAAG+TGG 0.560642 4.3:+19749811 MS.gene28747:CDS
TCTCGGTGTGCTGAGAGGGA+AGG 0.564630 4.3:+19749736 MS.gene28747:CDS
GCGGTAGCCACCATCTCAGC+CGG 0.573670 4.3:-19749125 None:intergenic
GATGAGGTCAATAAGAGGAC+TGG 0.574212 4.3:+19749485 MS.gene28747:CDS
GAATAGGTTGAGTGTTCAAG+GGG 0.576422 4.3:+19749334 MS.gene28747:CDS
TGCTGGTGACCGTGAAATTG+AGG 0.576895 4.3:+19749016 MS.gene28747:CDS
AACGGCGGGAACATCGTGAA+CGG 0.577620 4.3:-19748733 None:intergenic
GTTTGCGATCTTTGTCAATG+AGG 0.578315 4.3:-19748710 None:intergenic
AAGAGGACTGGAGGGAATCA+CGG 0.579431 4.3:+19749497 MS.gene28747:CDS
TGGTGGGCCGGCTGAGATGG+TGG 0.580027 4.3:+19749118 MS.gene28747:CDS
ATGTTGATGAGGTCAATAAG+AGG 0.580113 4.3:+19749480 MS.gene28747:CDS
CGCGTTGGATCAAAGGATCA+GGG 0.580476 4.3:+19749145 MS.gene28747:CDS
CCACGCGGACACCTAATGAC+CGG 0.582575 4.3:-19749098 None:intergenic
TGAGATGGTGGCTACCGCGT+TGG 0.586343 4.3:+19749130 MS.gene28747:CDS
TCACATCTGAACTACTGAGG+TGG 0.588791 4.3:-19750367 None:intergenic
GAAGCAAGATCTTCAAGCAT+CGG 0.589526 4.3:-19748861 None:intergenic
TCGATGTTGAGAAATTGAGA+TGG 0.590144 4.3:-19748830 None:intergenic
GAGGTCAATAAGAGGACTGG+AGG 0.591483 4.3:+19749488 MS.gene28747:CDS
TAGAGCAGCTTACGTTGTTG+GGG 0.594589 4.3:+19750311 MS.gene28747:CDS
AGATCTTCAAGCATCGGACG+AGG 0.598135 4.3:-19748855 None:intergenic
TCAATAAGTGCAGTGACTGC+TGG 0.598945 4.3:+19749986 MS.gene28747:CDS
GGTTGAACGAAATAAACGGC+GGG 0.599421 4.3:-19748747 None:intergenic
TAAGAAGGAGAATGACATGA+TGG 0.614444 4.3:+19749685 MS.gene28747:CDS
TGGTGGGTTGGAGTTTCCTG+AGG 0.614604 4.3:+19749415 MS.gene28747:CDS
GGAGTTTCCTGAGGTTGCGG+TGG 0.617381 4.3:+19749424 MS.gene28747:CDS
TGCTTGAAGATCTTGCTTCG+GGG 0.618864 4.3:+19748865 MS.gene28747:CDS
AAATTGAGGAGATTGTTGAG+AGG 0.621276 4.3:+19749030 MS.gene28747:CDS
AAGTCTGGTTCAGGAGCAAG+TGG 0.621847 4.3:+19750130 MS.gene28747:CDS
TATTAATCCGACTGAAGTGG+AGG 0.623131 4.3:+19749814 MS.gene28747:CDS
GTATAAGAATGATGTTGATG+AGG 0.625258 4.3:+19749469 MS.gene28747:CDS
CCATATATAATATGCTTGGG+AGG 0.626100 4.3:-19750256 None:intergenic
GTCAAAGATCTTCGTAAACA+CGG 0.631895 4.3:+19748672 MS.gene28747:CDS
CTGAACCAGACTTAGGAGCA+CGG 0.640321 4.3:-19750120 None:intergenic
ATTTCACGGTCACCAGCAGA+CGG 0.640573 4.3:-19749011 None:intergenic
AGGTCAATAAGAGGACTGGA+GGG 0.644829 4.3:+19749489 MS.gene28747:CDS
CCAAGCACATCATGAACCAA+CGG 0.646610 4.3:-19749302 None:intergenic
CACGAAGCATTTGATGAATG+CGG 0.648032 4.3:+19749553 MS.gene28747:CDS
ACATCTGAACTACTGAGGTG+GGG 0.648073 4.3:-19750365 None:intergenic
GAACTTCTCGGTGTGCTGAG+AGG 0.648753 4.3:+19749731 MS.gene28747:CDS
ACAGACAGCTAGCTTTGGCG+AGG 0.674437 4.3:+19750032 MS.gene28747:CDS
CGTTACCTGAGCTGACTGAG+AGG 0.681656 4.3:+19749582 MS.gene28747:CDS
CATTCACATCTGAACTACTG+AGG 0.684802 4.3:-19750370 None:intergenic
ATCTCAGCCGGCCCACCACG+CGG 0.700567 4.3:-19749113 None:intergenic
GACTGGAGGGAATCACGGTG+CGG 0.708144 4.3:+19749502 MS.gene28747:CDS
GAGCACGGGGATCAAAAGCG+AGG 0.710613 4.3:-19750105 None:intergenic
AACAGCGCTGAGAGAGTGTG+AGG 0.717344 4.3:+19749844 MS.gene28747:CDS
CCTGATCCTTTGATCCAACG+CGG 0.725049 4.3:-19749144 None:intergenic
GAACCAGACTTAGGAGCACG+GGG 0.729204 4.3:-19750118 None:intergenic
CCGGTCATTAGGTGTCCGCG+TGG 0.739505 4.3:+19749098 MS.gene28747:CDS
TGTTGGGTGAGATCAAGGAG+AGG 0.746514 4.3:+19749645 MS.gene28747:CDS
TGGTTGAACGAAATAAACGG+CGG 0.753853 4.3:-19748748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATAATTTGTTTACTGA+AGG + chr4.3:19749182-19749201 MS.gene28747:CDS 20.0%
! AAAACAATTGCTTCCTTAAA+TGG - chr4.3:19750172-19750191 None:intergenic 25.0%
! AATTGGTTGAACGAAATAAA+CGG - chr4.3:19748754-19748773 None:intergenic 25.0%
! AGATCTTTGACATGAATTAA+CGG - chr4.3:19748663-19748682 None:intergenic 25.0%
! GTTCCATATATAATATGCTT+GGG - chr4.3:19750262-19750281 None:intergenic 25.0%
!!! AATAATTTGTTTACTGAAGG+TGG + chr4.3:19749185-19749204 MS.gene28747:CDS 25.0%
!!! ATAATTTGTTTACTGAAGGT+GGG + chr4.3:19749186-19749205 MS.gene28747:CDS 25.0%
!!! TAATGGTTTGTTTTGTGTTT+TGG + chr4.3:19749058-19749077 MS.gene28747:CDS 25.0%
!!! TGAGGATAATTTGTTTTCAT+TGG + chr4.3:19748956-19748975 MS.gene28747:CDS 25.0%
ATTGTTGAGAGGATTGTTAA+TGG + chr4.3:19749041-19749060 MS.gene28747:CDS 30.0%
CATCATGTATCTGATTTCAT+CGG + chr4.3:19749787-19749806 MS.gene28747:CDS 30.0%
CCATTTAAAAGGTCCATTTA+AGG + chr4.3:19750156-19750175 MS.gene28747:CDS 30.0%
CGTTCCATATATAATATGCT+TGG - chr4.3:19750263-19750282 None:intergenic 30.0%
CTATCAAAAACACACAAAAC+CGG - chr4.3:19749236-19749255 None:intergenic 30.0%
GTATAAGAATGATGTTGATG+AGG + chr4.3:19749469-19749488 MS.gene28747:CDS 30.0%
! ATTTTGTTAGTTCGTTTCAG+AGG + chr4.3:19749210-19749229 MS.gene28747:CDS 30.0%
! CAGAAGTAATATTGTTGACT+GGG + chr4.3:19749943-19749962 MS.gene28747:CDS 30.0%
! CCTTAAATGGACCTTTTAAA+TGG - chr4.3:19750159-19750178 None:intergenic 30.0%
! GAAGCAATTGTTTTCATGAT+TGG + chr4.3:19750178-19750197 MS.gene28747:CDS 30.0%
AAATTGAGGAGATTGTTGAG+AGG + chr4.3:19749030-19749049 MS.gene28747:CDS 35.0%
AACCTAAACCAACCAATAAC+AGG + chr4.3:19748558-19748577 MS.gene28747:CDS 35.0%
AACTATTAATCCGACTGAAG+TGG + chr4.3:19749811-19749830 MS.gene28747:CDS 35.0%
AGAATGACATGATGGTTAGA+GGG + chr4.3:19749693-19749712 MS.gene28747:CDS 35.0%
ATTGAAAGGAGTGAACTTCT+CGG + chr4.3:19749719-19749738 MS.gene28747:CDS 35.0%
CAACAATCTCCTCAATTTCA+CGG - chr4.3:19749028-19749047 None:intergenic 35.0%
CCATATATAATATGCTTGGG+AGG - chr4.3:19750259-19750278 None:intergenic 35.0%
CCTCCCAAGCATATTATATA+TGG + chr4.3:19750256-19750275 MS.gene28747:CDS 35.0%
CGATGAAATCAGATACATGA+TGG - chr4.3:19749789-19749808 None:intergenic 35.0%
CGTTGAACATTGGATTGAAT+TGG - chr4.3:19748771-19748790 None:intergenic 35.0%
GACAGAATTTGTCGTAGATA+AGG - chr4.3:19748626-19748645 None:intergenic 35.0%
GCAGAAGTAATATTGTTGAC+TGG + chr4.3:19749942-19749961 MS.gene28747:CDS 35.0%
GCTTGATTCATATGCTAAGA+AGG + chr4.3:19749670-19749689 MS.gene28747:CDS 35.0%
GTCAAAGATCTTCGTAAACA+CGG + chr4.3:19748672-19748691 MS.gene28747:CDS 35.0%
TAACATTGCTACTGTGTTGT+TGG + chr4.3:19749628-19749647 MS.gene28747:CDS 35.0%
TAAGAAGGAGAATGACATGA+TGG + chr4.3:19749685-19749704 MS.gene28747:CDS 35.0%
TAAGAGTCTGAATGTTTCGT+TGG + chr4.3:19749901-19749920 MS.gene28747:CDS 35.0%
TACATATCTGTCTCAGGATT+TGG - chr4.3:19750085-19750104 None:intergenic 35.0%
TCGATGTTGAGAAATTGAGA+TGG - chr4.3:19748833-19748852 None:intergenic 35.0%
TTCAGCATGACTTTAGGTAT+AGG + chr4.3:19749279-19749298 MS.gene28747:CDS 35.0%
TTCGATTCAGCGAATTTCAA+AGG + chr4.3:19748902-19748921 MS.gene28747:CDS 35.0%
! AACATTGCTACTGTGTTGTT+GGG + chr4.3:19749629-19749648 MS.gene28747:CDS 35.0%
! ATGTTGATGAGGTCAATAAG+AGG + chr4.3:19749480-19749499 MS.gene28747:CDS 35.0%
! ATTGTTTTCATGATTGGTGG+TGG + chr4.3:19750184-19750203 MS.gene28747:CDS 35.0%
! GCAATTGTTTTCATGATTGG+TGG + chr4.3:19750181-19750200 MS.gene28747:CDS 35.0%
! GTTGTTGTTGTTCCTGTTAT+TGG - chr4.3:19748573-19748592 None:intergenic 35.0%
! TGAATAGGTTGAGTGTTCAA+GGG + chr4.3:19749333-19749352 MS.gene28747:CDS 35.0%
! TTGAATAGGTTGAGTGTTCA+AGG + chr4.3:19749332-19749351 MS.gene28747:CDS 35.0%
! TTGTTGTTCCTGTTATTGGT+TGG - chr4.3:19748569-19748588 None:intergenic 35.0%
!! CGGTTTTGTGTGTTTTTGAT+AGG + chr4.3:19749234-19749253 MS.gene28747:CDS 35.0%
!! TCTTGAGTTTGTTACACTTG+AGG + chr4.3:19748938-19748957 MS.gene28747:CDS 35.0%
!! TTCCTGTTATTGGTTGGTTT+AGG - chr4.3:19748563-19748582 None:intergenic 35.0%
AAACCGAAGCTTATCCATCT+TGG - chr4.3:19749765-19749784 None:intergenic 40.0%
AATCTTAATGATCCGTCTGC+TGG + chr4.3:19748999-19749018 MS.gene28747:CDS 40.0%
ACTGTTGAAGCCTTGATTGA+AGG + chr4.3:19750055-19750074 MS.gene28747:CDS 40.0%
ATGCTTGAAGATCTTGCTTC+GGG + chr4.3:19748864-19748883 MS.gene28747:CDS 40.0%
ATTTGGTCTCCCTTCAATCA+AGG - chr4.3:19750068-19750087 None:intergenic 40.0%
CTGTTGAAGCCTTGATTGAA+GGG + chr4.3:19750056-19750075 MS.gene28747:CDS 40.0%
GAACCAAGATGGATAAGCTT+CGG + chr4.3:19749759-19749778 MS.gene28747:CDS 40.0%
GAAGCAAGATCTTCAAGCAT+CGG - chr4.3:19748864-19748883 None:intergenic 40.0%
GAGAATGACATGATGGTTAG+AGG + chr4.3:19749692-19749711 MS.gene28747:CDS 40.0%
GATGCTTGAAGATCTTGCTT+CGG + chr4.3:19748863-19748882 MS.gene28747:CDS 40.0%
GCAAGTGGCAACCATTTAAA+AGG + chr4.3:19750145-19750164 MS.gene28747:CDS 40.0%
GTTTGCGATCTTTGTCAATG+AGG - chr4.3:19748713-19748732 None:intergenic 40.0%
TATTAATCCGACTGAAGTGG+AGG + chr4.3:19749814-19749833 MS.gene28747:CDS 40.0%
TGCGATGATTCGTTGAACAT+TGG - chr4.3:19748781-19748800 None:intergenic 40.0%
TGGGATGAGATCTTATGAGT+TGG + chr4.3:19749364-19749383 MS.gene28747:CDS 40.0%
TGGTTGAACGAAATAAACGG+CGG - chr4.3:19748751-19748770 None:intergenic 40.0%
TTGCGATTCAGCATGACTTT+AGG + chr4.3:19749273-19749292 MS.gene28747:CDS 40.0%
! CACGAAGCATTTGATGAATG+CGG + chr4.3:19749553-19749572 MS.gene28747:CDS 40.0%
! GAATAGGTTGAGTGTTCAAG+GGG + chr4.3:19749334-19749353 MS.gene28747:CDS 40.0%
! TGATAGGAATTTTGAGCTGC+CGG + chr4.3:19749250-19749269 MS.gene28747:CDS 40.0%
! TTTGATGGGACGGATTTGAT+TGG + chr4.3:19749527-19749546 MS.gene28747:CDS 40.0%
!! GACAGAACTTTTGACTGGAA+TGG + chr4.3:19750282-19750301 MS.gene28747:CDS 40.0%
!! TGCTTGGGTTGAAGTTGAAT+AGG + chr4.3:19749318-19749337 MS.gene28747:CDS 40.0%
!! TGGTTAGAGGGAGTATTGAA+AGG + chr4.3:19749705-19749724 MS.gene28747:CDS 40.0%
!!! GATTCGTTTTGGGTTGCAAA+TGG + chr4.3:19749395-19749414 MS.gene28747:CDS 40.0%
!!! GGATAGTGCTGATTCGTTTT+GGG + chr4.3:19749385-19749404 MS.gene28747:CDS 40.0%
!!! TGGATAGTGCTGATTCGTTT+TGG + chr4.3:19749384-19749403 MS.gene28747:CDS 40.0%
AAGTCATGCTGAATCGCAAC+CGG - chr4.3:19749272-19749291 None:intergenic 45.0%
ACGTTGTTGGGGAAGAAGAT+GGG + chr4.3:19750322-19750341 MS.gene28747:CDS 45.0%
AGGTCAATAAGAGGACTGGA+GGG + chr4.3:19749489-19749508 MS.gene28747:CDS 45.0%
CCAAGCACATCATGAACCAA+CGG - chr4.3:19749305-19749324 None:intergenic 45.0%
CTGAATCGAATCCGAAGCTA+TGG - chr4.3:19748892-19748911 None:intergenic 45.0%
GATGAGGTCAATAAGAGGAC+TGG + chr4.3:19749485-19749504 MS.gene28747:CDS 45.0%
GGTTGAACGAAATAAACGGC+GGG - chr4.3:19748750-19748769 None:intergenic 45.0%
GTAGAGCAGCTTACGTTGTT+GGG + chr4.3:19750310-19750329 MS.gene28747:CDS 45.0%
TACGTTGTTGGGGAAGAAGA+TGG + chr4.3:19750321-19750340 MS.gene28747:CDS 45.0%
TAGAGCAGCTTACGTTGTTG+GGG + chr4.3:19750311-19750330 MS.gene28747:CDS 45.0%
TCAATAAGTGCAGTGACTGC+TGG + chr4.3:19749986-19750005 MS.gene28747:CDS 45.0%
TGACTGTCCATAGAGCTTCT+CGG - chr4.3:19749969-19749988 None:intergenic 45.0%
TGACTTTAGGTATAGGCCGT+TGG + chr4.3:19749286-19749305 MS.gene28747:CDS 45.0%
TGCTTGAAGATCTTGCTTCG+GGG + chr4.3:19748865-19748884 MS.gene28747:CDS 45.0%
TGTAGAGCAGCTTACGTTGT+TGG + chr4.3:19750309-19750328 MS.gene28747:CDS 45.0%
TGTTAGTTCGTTTCAGAGGC+CGG + chr4.3:19749214-19749233 MS.gene28747:CDS 45.0%
TTGAGTGTTCAAGGGGAGAA+AGG + chr4.3:19749341-19749360 MS.gene28747:CDS 45.0%
! AAGATGGGTTTGGGTAATGC+TGG + chr4.3:19750337-19750356 MS.gene28747:CDS 45.0%
! GGAACGACAGAACTTTTGAC+TGG + chr4.3:19750277-19750296 MS.gene28747:CDS 45.0%
! TAGTGACAGACAGCTAGCTT+TGG + chr4.3:19750027-19750046 MS.gene28747:CDS 45.0%
! TGTGTTGTTGGGTGAGATCA+AGG + chr4.3:19749640-19749659 MS.gene28747:CDS 45.0%
! TTGGGGAAGAAGATGGGTTT+GGG + chr4.3:19750328-19750347 MS.gene28747:CDS 45.0%
!! CGTTGGTTCATGATGTGCTT+GGG + chr4.3:19749303-19749322 MS.gene28747:CDS 45.0%
!! TTGGTGTTGTTCCGGTCATT+AGG + chr4.3:19749087-19749106 MS.gene28747:CDS 45.0%
!!! CGTTTTGGGTTGCAAATGGT+GGG + chr4.3:19749399-19749418 MS.gene28747:CDS 45.0%
!!! TCGTTTTGGGTTGCAAATGG+TGG + chr4.3:19749398-19749417 MS.gene28747:CDS 45.0%
!!! TTTTGTGTTTTGGCGACGCT+TGG + chr4.3:19749068-19749087 MS.gene28747:CDS 45.0%
AAGAGGACTGGAGGGAATCA+CGG + chr4.3:19749497-19749516 MS.gene28747:CDS 50.0%
AATCACGGTGCGGAGTTTGA+TGG + chr4.3:19749512-19749531 MS.gene28747:CDS 50.0%
AGTGTTCAAGGGGAGAAAGG+TGG + chr4.3:19749344-19749363 MS.gene28747:CDS 50.0%
ATCACGGTGCGGAGTTTGAT+GGG + chr4.3:19749513-19749532 MS.gene28747:CDS 50.0%
ATTTCACGGTCACCAGCAGA+CGG - chr4.3:19749014-19749033 None:intergenic 50.0%
CCTGATCCTTTGATCCAACG+CGG - chr4.3:19749147-19749166 None:intergenic 50.0%
CGCGTTGGATCAAAGGATCA+GGG + chr4.3:19749145-19749164 MS.gene28747:CDS 50.0%
CTGAACCAGACTTAGGAGCA+CGG - chr4.3:19750123-19750142 None:intergenic 50.0%
CTTGCTCCTGAACCAGACTT+AGG - chr4.3:19750130-19750149 None:intergenic 50.0%
GAGGTCAATAAGAGGACTGG+AGG + chr4.3:19749488-19749507 MS.gene28747:CDS 50.0%
GCGAGGTACATATCTGTCTC+AGG - chr4.3:19750091-19750110 None:intergenic 50.0%
GTGTTCAAGGGGAGAAAGGT+GGG + chr4.3:19749345-19749364 MS.gene28747:CDS 50.0%
GTTGGAGTTTCCTGAGGTTG+CGG + chr4.3:19749421-19749440 MS.gene28747:CDS 50.0%
TGCTGGTGACCGTGAAATTG+AGG + chr4.3:19749016-19749035 MS.gene28747:CDS 50.0%
TGTTGGGTGAGATCAAGGAG+AGG + chr4.3:19749645-19749664 MS.gene28747:CDS 50.0%
! AACTTCTCGGTGTGCTGAGA+GGG + chr4.3:19749732-19749751 MS.gene28747:CDS 50.0%
! AAGTCTGGTTCAGGAGCAAG+TGG + chr4.3:19750130-19750149 MS.gene28747:CDS 50.0%
! GTTGGGGAAGAAGATGGGTT+TGG + chr4.3:19750327-19750346 MS.gene28747:CDS 50.0%
! TGAACCAGACTTAGGAGCAC+GGG - chr4.3:19750122-19750141 None:intergenic 50.0%
!! AGATCTTCAAGCATCGGACG+AGG - chr4.3:19748858-19748877 None:intergenic 50.0%
!! CCGTTGGTTCATGATGTGCT+TGG + chr4.3:19749302-19749321 MS.gene28747:CDS 50.0%
!! TTGGGTTGCAAATGGTGGGT+TGG + chr4.3:19749403-19749422 MS.gene28747:CDS 50.0%
AACGGCGGGAACATCGTGAA+CGG - chr4.3:19748736-19748755 None:intergenic 55.0%
CCGCGTTGGATCAAAGGATC+AGG + chr4.3:19749144-19749163 MS.gene28747:CDS 55.0%
CGTTACCTGAGCTGACTGAG+AGG + chr4.3:19749582-19749601 MS.gene28747:CDS 55.0%
GAGAGGGAAGGGAACCAAGA+TGG + chr4.3:19749748-19749767 MS.gene28747:CDS 55.0%
TCAATCTCCACCGCAACCTC+AGG - chr4.3:19749434-19749453 None:intergenic 55.0%
TCATTAGGTGTCCGCGTGGT+GGG + chr4.3:19749102-19749121 MS.gene28747:CDS 55.0%
TCCACAGCCTCCACTTCAGT+CGG - chr4.3:19749824-19749843 None:intergenic 55.0%
TGCTTCCTCTCAGTCAGCTC+AGG - chr4.3:19749590-19749609 None:intergenic 55.0%
TGCTTCGGGGACCATAGCTT+CGG + chr4.3:19748878-19748897 MS.gene28747:CDS 55.0%
TGGCTACCGCGTTGGATCAA+AGG + chr4.3:19749138-19749157 MS.gene28747:CDS 55.0%
! AACAGCGCTGAGAGAGTGTG+AGG + chr4.3:19749844-19749863 MS.gene28747:CDS 55.0%
! CGTGCTCCTAAGTCTGGTTC+AGG + chr4.3:19750121-19750140 MS.gene28747:CDS 55.0%
! GAACCAGACTTAGGAGCACG+GGG - chr4.3:19750121-19750140 None:intergenic 55.0%
! GAACTTCTCGGTGTGCTGAG+AGG + chr4.3:19749731-19749750 MS.gene28747:CDS 55.0%
!! ACAGACAGCTAGCTTTGGCG+AGG + chr4.3:19750032-19750051 MS.gene28747:CDS 55.0%
!! TGGTGGGTTGGAGTTTCCTG+AGG + chr4.3:19749415-19749434 MS.gene28747:CDS 55.0%
ACGGCGGGAACATCGTGAAC+GGG - chr4.3:19748735-19748754 None:intergenic 60.0%
CCACGCGGACACCTAATGAC+CGG - chr4.3:19749101-19749120 None:intergenic 60.0%
CGGTGCGGAGTTTGATGGGA+CGG + chr4.3:19749517-19749536 MS.gene28747:CDS 60.0%
GACTGGAGGGAATCACGGTG+CGG + chr4.3:19749502-19749521 MS.gene28747:CDS 60.0%
GACTGGGCCGAGAAGCTCTA+TGG + chr4.3:19749959-19749978 MS.gene28747:CDS 60.0%
GAGCACGGGGATCAAAAGCG+AGG - chr4.3:19750108-19750127 None:intergenic 60.0%
GATCCCCGTGCTCCTAAGTC+TGG + chr4.3:19750115-19750134 MS.gene28747:CDS 60.0%
GGAGTTTCCTGAGGTTGCGG+TGG + chr4.3:19749424-19749443 MS.gene28747:CDS 60.0%
GTCATTAGGTGTCCGCGTGG+TGG + chr4.3:19749101-19749120 MS.gene28747:CDS 60.0%
TCCGACTGAAGTGGAGGCTG+TGG + chr4.3:19749820-19749839 MS.gene28747:CDS 60.0%
! CTCGGTGTGCTGAGAGGGAA+GGG + chr4.3:19749737-19749756 MS.gene28747:CDS 60.0%
! TCTCGGTGTGCTGAGAGGGA+AGG + chr4.3:19749736-19749755 MS.gene28747:CDS 60.0%
! TGAGATGGTGGCTACCGCGT+TGG + chr4.3:19749130-19749149 MS.gene28747:CDS 60.0%
!! GGCGACGCTTGGTGTTGTTC+CGG + chr4.3:19749079-19749098 MS.gene28747:CDS 60.0%
CCGGTCATTAGGTGTCCGCG+TGG + chr4.3:19749098-19749117 MS.gene28747:CDS 65.0%
GCGGTAGCCACCATCTCAGC+CGG - chr4.3:19749128-19749147 None:intergenic 65.0%
ATCTCAGCCGGCCCACCACG+CGG - chr4.3:19749116-19749135 None:intergenic 70.0%
! TGGTGGGCCGGCTGAGATGG+TGG + chr4.3:19749118-19749137 MS.gene28747:CDS 70.0%
!! TAGGTGTCCGCGTGGTGGGC+CGG + chr4.3:19749106-19749125 MS.gene28747:CDS 70.0%
!! GCGTGGTGGGCCGGCTGAGA+TGG + chr4.3:19749115-19749134 MS.gene28747:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 19748552 19750378 19748552 ID=MS.gene28747
chr4.3 mRNA 19748552 19750378 19748552 ID=MS.gene28747.t1;Parent=MS.gene28747
chr4.3 exon 19748552 19750378 19748552 ID=MS.gene28747.t1.exon1;Parent=MS.gene28747.t1
chr4.3 CDS 19748552 19750378 19748552 ID=cds.MS.gene28747.t1;Parent=MS.gene28747.t1
Gene Sequence

>MS.gene28747

ATGTTAAACCTAAACCAACCAATAACAGGAACAACAACAACAACAACAACGAATGAAGAAGCATACAAGATCCTTATCTACGACAAATTCTGTCAAAACATTCTCTCACCGTTAATTCATGTCAAAGATCTTCGTAAACACGGTGTCACTCTCTATTTCCTCATTGACAAAGATCGCAAACCCGTTCACGATGTTCCCGCCGTTTATTTCGTTCAACCAATTCAATCCAATGTTCAACGAATCATCGCAGATGCTTCACGATCGTTGTATCAATCATTCCATCTCAATTTCTCAACATCGATTCCTCGTCCGATGCTTGAAGATCTTGCTTCGGGGACCATAGCTTCGGATTCGATTCAGCGAATTTCAAAGGTTCATGATCAGTATCTTGAGTTTGTTACACTTGAGGATAATTTGTTTTCATTGGCTCAGAAATCTTGCTTTTTGAATCTTAATGATCCGTCTGCTGGTGACCGTGAAATTGAGGAGATTGTTGAGAGGATTGTTAATGGTTTGTTTTGTGTTTTGGCGACGCTTGGTGTTGTTCCGGTCATTAGGTGTCCGCGTGGTGGGCCGGCTGAGATGGTGGCTACCGCGTTGGATCAAAGGATCAGGGATCATTTGTTGTCAAAGAATAATTTGTTTACTGAAGGTGGGAATTTTGTTAGTTCGTTTCAGAGGCCGGTTTTGTGTGTTTTTGATAGGAATTTTGAGCTGCCGGTTGCGATTCAGCATGACTTTAGGTATAGGCCGTTGGTTCATGATGTGCTTGGGTTGAAGTTGAATAGGTTGAGTGTTCAAGGGGAGAAAGGTGGGATGAGATCTTATGAGTTGGATAGTGCTGATTCGTTTTGGGTTGCAAATGGTGGGTTGGAGTTTCCTGAGGTTGCGGTGGAGATTGAGACTCAGCTGAATAAGTATAAGAATGATGTTGATGAGGTCAATAAGAGGACTGGAGGGAATCACGGTGCGGAGTTTGATGGGACGGATTTGATTGGTAACACGAAGCATTTGATGAATGCGGTGAACTCGTTACCTGAGCTGACTGAGAGGAAGCAAGTGATTGATAAGCATACTAACATTGCTACTGTGTTGTTGGGTGAGATCAAGGAGAGGTCGCTTGATTCATATGCTAAGAAGGAGAATGACATGATGGTTAGAGGGAGTATTGAAAGGAGTGAACTTCTCGGTGTGCTGAGAGGGAAGGGAACCAAGATGGATAAGCTTCGGTTTGCCATCATGTATCTGATTTCATCGGAAACTATTAATCCGACTGAAGTGGAGGCTGTGGAAACAGCGCTGAGAGAGTGTGAGGTTGATACTGCTGCTTTTCAGTATGTGAAAAAGATTAAGAGTCTGAATGTTTCGTTGGCTAATGCAAATTCTGCTAGCAGAAGTAATATTGTTGACTGGGCCGAGAAGCTCTATGGACAGTCAATAAGTGCAGTGACTGCTGGTGTCAAAAATCTGTTATCTAGTGACAGACAGCTAGCTTTGGCGAGGACTGTTGAAGCCTTGATTGAAGGGAGACCAAATCCTGAGACAGATATGTACCTCGCTTTTGATCCCCGTGCTCCTAAGTCTGGTTCAGGAGCAAGTGGCAACCATTTAAAAGGTCCATTTAAGGAAGCAATTGTTTTCATGATTGGTGGTGGTAATTATGTTGAATATTGTAGTCTGCAAGAGCTTGCTCAAAATCAGCAGCCTCCCAAGCATATTATATATGGAACGACAGAACTTTTGACTGGAATGGACTTTGTAGAGCAGCTTACGTTGTTGGGGAAGAAGATGGGTTTGGGTAATGCTGGTTCTGCCCCACCTCAGTAG

Protein sequence

>MS.gene28747.t1

MLNLNQPITGTTTTTTTNEEAYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPIQSNVQRIIADASRSLYQSFHLNFSTSIPRPMLEDLASGTIASDSIQRISKVHDQYLEFVTLEDNLFSLAQKSCFLNLNDPSAGDREIEEIVERIVNGLFCVLATLGVVPVIRCPRGGPAEMVATALDQRIRDHLLSKNNLFTEGGNFVSSFQRPVLCVFDRNFELPVAIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMRSYELDSADSFWVANGGLEFPEVAVEIETQLNKYKNDVDEVNKRTGGNHGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGSIERSELLGVLRGKGTKMDKLRFAIMYLISSETINPTEVEAVETALRECEVDTAAFQYVKKIKSLNVSLANANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSSDRQLALARTVEALIEGRPNPETDMYLAFDPRAPKSGSGASGNHLKGPFKEAIVFMIGGGNYVEYCSLQELAQNQQPPKHIIYGTTELLTGMDFVEQLTLLGKKMGLGNAGSAPPQ