Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28747.t1 | XP_013457265.1 | 98.9 | 609 | 6 | 1 | 1 | 608 | 16 | 624 | 0.00E+00 | 1171.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28747.t1 | Q9SL48 | 76.5 | 604 | 134 | 4 | 1 | 600 | 16 | 615 | 1.1e-267 | 923.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28747.t1 | G7ZYG6 | 98.9 | 609 | 6 | 1 | 1 | 608 | 16 | 624 | 0.0e+00 | 1171.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051234 | MS.gene28747 | 0.819294 | 1.25E-52 | -1.69E-46 |
MS.gene051343 | MS.gene28747 | 0.82066 | 6.10E-53 | -1.69E-46 |
MS.gene051642 | MS.gene28747 | 0.810665 | 1.03E-50 | -1.69E-46 |
MS.gene052609 | MS.gene28747 | 0.806472 | 8.09E-50 | -1.69E-46 |
MS.gene053143 | MS.gene28747 | 0.84819 | 7.18E-60 | -1.69E-46 |
MS.gene054585 | MS.gene28747 | 0.822501 | 2.29E-53 | -1.69E-46 |
MS.gene061006 | MS.gene28747 | 0.811168 | 8.01E-51 | -1.69E-46 |
MS.gene061100 | MS.gene28747 | 0.803908 | 2.79E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene28747 | MS.gene072972 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28747.t1 | MTR_4g094405 | 99.015 | 609 | 5 | 1 | 1 | 608 | 16 | 624 | 0.0 | 1249 |
MS.gene28747.t1 | MTR_3g090170 | 23.792 | 559 | 350 | 21 | 23 | 560 | 22 | 525 | 4.06e-22 | 100 |
MS.gene28747.t1 | MTR_4g023610 | 23.733 | 434 | 284 | 15 | 18 | 428 | 40 | 449 | 9.54e-22 | 100 |
MS.gene28747.t1 | MTR_3g090170 | 25.059 | 423 | 266 | 14 | 23 | 427 | 22 | 411 | 1.68e-19 | 92.0 |
MS.gene28747.t1 | MTR_4g102120 | 22.901 | 393 | 267 | 11 | 12 | 385 | 35 | 410 | 4.13e-18 | 88.6 |
MS.gene28747.t1 | MTR_8g052140 | 92.308 | 39 | 3 | 0 | 33 | 71 | 35 | 73 | 1.30e-17 | 78.2 |
MS.gene28747.t1 | MTR_5g011790 | 21.327 | 422 | 295 | 13 | 12 | 414 | 35 | 438 | 3.04e-16 | 82.4 |
MS.gene28747.t1 | MTR_5g011790 | 21.327 | 422 | 295 | 13 | 12 | 414 | 35 | 438 | 4.10e-16 | 82.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28747.t1 | AT2G17980 | 77.152 | 604 | 130 | 4 | 1 | 600 | 16 | 615 | 0.0 | 974 |
MS.gene28747.t1 | AT4G31740 | 64.948 | 194 | 44 | 2 | 406 | 599 | 1 | 170 | 2.75e-76 | 240 |
MS.gene28747.t1 | AT4G36100 | 65.185 | 135 | 40 | 3 | 371 | 504 | 107 | 235 | 1.03e-44 | 159 |
MS.gene28747.t1 | AT4G12120 | 24.318 | 403 | 258 | 14 | 21 | 399 | 42 | 421 | 4.61e-21 | 98.2 |
MS.gene28747.t1 | AT1G12360 | 21.483 | 391 | 274 | 9 | 12 | 385 | 33 | 407 | 1.43e-19 | 93.2 |
MS.gene28747.t1 | AT1G77140 | 21.635 | 587 | 388 | 20 | 23 | 590 | 22 | 555 | 4.91e-19 | 91.3 |
MS.gene28747.t1 | AT1G02010 | 22.274 | 431 | 296 | 15 | 13 | 428 | 4 | 410 | 6.74e-19 | 91.3 |
MS.gene28747.t1 | AT1G02010 | 22.274 | 431 | 296 | 15 | 13 | 428 | 36 | 442 | 8.22e-19 | 90.9 |
MS.gene28747.t1 | AT1G02010 | 22.274 | 431 | 296 | 15 | 13 | 428 | 36 | 442 | 8.90e-19 | 90.9 |
MS.gene28747.t1 | AT1G02010 | 22.274 | 431 | 296 | 15 | 13 | 428 | 36 | 442 | 9.49e-19 | 90.9 |
Find 150 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACAATTGCTTCCTTAAA+TGG | 0.132005 | 4.3:-19750169 | None:intergenic |
GTTGTTGTTGTTCCTGTTAT+TGG | 0.201825 | 4.3:-19748570 | None:intergenic |
CCATTTAAAAGGTCCATTTA+AGG | 0.245268 | 4.3:+19750156 | MS.gene28747:CDS |
GAGAATGACATGATGGTTAG+AGG | 0.262303 | 4.3:+19749692 | MS.gene28747:CDS |
TGGATAGTGCTGATTCGTTT+TGG | 0.273156 | 4.3:+19749384 | MS.gene28747:CDS |
CCTCCCAAGCATATTATATA+TGG | 0.307162 | 4.3:+19750256 | MS.gene28747:CDS |
ATGCTTGAAGATCTTGCTTC+GGG | 0.309638 | 4.3:+19748864 | MS.gene28747:CDS |
GCAAGTGGCAACCATTTAAA+AGG | 0.326987 | 4.3:+19750145 | MS.gene28747:CDS |
TTGGTGTTGTTCCGGTCATT+AGG | 0.336373 | 4.3:+19749087 | MS.gene28747:CDS |
TTGCGATTCAGCATGACTTT+AGG | 0.340194 | 4.3:+19749273 | MS.gene28747:CDS |
GTAGAGCAGCTTACGTTGTT+GGG | 0.345957 | 4.3:+19750310 | MS.gene28747:CDS |
TTGGGGAAGAAGATGGGTTT+GGG | 0.355383 | 4.3:+19750328 | MS.gene28747:CDS |
TACATATCTGTCTCAGGATT+TGG | 0.363551 | 4.3:-19750082 | None:intergenic |
CGTTGAACATTGGATTGAAT+TGG | 0.365758 | 4.3:-19748768 | None:intergenic |
AATAATTTGTTTACTGAAGG+TGG | 0.367485 | 4.3:+19749185 | MS.gene28747:CDS |
GATCCCCGTGCTCCTAAGTC+TGG | 0.372753 | 4.3:+19750115 | MS.gene28747:CDS |
GATGCTTGAAGATCTTGCTT+CGG | 0.373839 | 4.3:+19748863 | MS.gene28747:CDS |
ATTGTTGAGAGGATTGTTAA+TGG | 0.385177 | 4.3:+19749041 | MS.gene28747:CDS |
GGCGACGCTTGGTGTTGTTC+CGG | 0.385704 | 4.3:+19749079 | MS.gene28747:CDS |
TTCCTGTTATTGGTTGGTTT+AGG | 0.389171 | 4.3:-19748560 | None:intergenic |
AACCTAAACCAACCAATAAC+AGG | 0.402200 | 4.3:+19748558 | MS.gene28747:CDS |
TAGGTGTCCGCGTGGTGGGC+CGG | 0.402954 | 4.3:+19749106 | MS.gene28747:CDS |
GACAGAATTTGTCGTAGATA+AGG | 0.409373 | 4.3:-19748623 | None:intergenic |
GTTGGGGAAGAAGATGGGTT+TGG | 0.412638 | 4.3:+19750327 | MS.gene28747:CDS |
AACATTGCTACTGTGTTGTT+GGG | 0.414573 | 4.3:+19749629 | MS.gene28747:CDS |
GACTGGGCCGAGAAGCTCTA+TGG | 0.415523 | 4.3:+19749959 | MS.gene28747:CDS |
TAACATTGCTACTGTGTTGT+TGG | 0.421174 | 4.3:+19749628 | MS.gene28747:CDS |
TGCTTCGGGGACCATAGCTT+CGG | 0.422216 | 4.3:+19748878 | MS.gene28747:CDS |
CGTGCTCCTAAGTCTGGTTC+AGG | 0.428583 | 4.3:+19750121 | MS.gene28747:CDS |
GCGTGGTGGGCCGGCTGAGA+TGG | 0.429236 | 4.3:+19749115 | MS.gene28747:CDS |
TTGAATAGGTTGAGTGTTCA+AGG | 0.432954 | 4.3:+19749332 | MS.gene28747:CDS |
CGTTGGTTCATGATGTGCTT+GGG | 0.434927 | 4.3:+19749303 | MS.gene28747:CDS |
AAACCGAAGCTTATCCATCT+TGG | 0.435098 | 4.3:-19749762 | None:intergenic |
ATTTGGTCTCCCTTCAATCA+AGG | 0.437182 | 4.3:-19750065 | None:intergenic |
CCGCGTTGGATCAAAGGATC+AGG | 0.441656 | 4.3:+19749144 | MS.gene28747:CDS |
CTGTTGAAGCCTTGATTGAA+GGG | 0.444683 | 4.3:+19750056 | MS.gene28747:CDS |
TGACTGTCCATAGAGCTTCT+CGG | 0.445565 | 4.3:-19749966 | None:intergenic |
TTTGATGGGACGGATTTGAT+TGG | 0.447772 | 4.3:+19749527 | MS.gene28747:CDS |
TGTAGAGCAGCTTACGTTGT+TGG | 0.448636 | 4.3:+19750309 | MS.gene28747:CDS |
ACTGTTGAAGCCTTGATTGA+AGG | 0.449353 | 4.3:+19750055 | MS.gene28747:CDS |
TTGAGTGTTCAAGGGGAGAA+AGG | 0.451443 | 4.3:+19749341 | MS.gene28747:CDS |
TACGTTGTTGGGGAAGAAGA+TGG | 0.452960 | 4.3:+19750321 | MS.gene28747:CDS |
AGATCTTTGACATGAATTAA+CGG | 0.456244 | 4.3:-19748660 | None:intergenic |
TGTTAGTTCGTTTCAGAGGC+CGG | 0.458725 | 4.3:+19749214 | MS.gene28747:CDS |
TGCTTGGGTTGAAGTTGAAT+AGG | 0.461236 | 4.3:+19749318 | MS.gene28747:CDS |
AAGAATAATTTGTTTACTGA+AGG | 0.466422 | 4.3:+19749182 | MS.gene28747:CDS |
GCAGAAGTAATATTGTTGAC+TGG | 0.470359 | 4.3:+19749942 | MS.gene28747:CDS |
ATAATTTGTTTACTGAAGGT+GGG | 0.472080 | 4.3:+19749186 | MS.gene28747:CDS |
TCAATCTCCACCGCAACCTC+AGG | 0.475104 | 4.3:-19749431 | None:intergenic |
TGCGATGATTCGTTGAACAT+TGG | 0.478197 | 4.3:-19748778 | None:intergenic |
TCATTAGGTGTCCGCGTGGT+GGG | 0.478480 | 4.3:+19749102 | MS.gene28747:CDS |
AATCACGGTGCGGAGTTTGA+TGG | 0.479706 | 4.3:+19749512 | MS.gene28747:CDS |
CGTTCCATATATAATATGCT+TGG | 0.482424 | 4.3:-19750260 | None:intergenic |
CAACAATCTCCTCAATTTCA+CGG | 0.487353 | 4.3:-19749025 | None:intergenic |
TTCAGCATGACTTTAGGTAT+AGG | 0.487647 | 4.3:+19749279 | MS.gene28747:CDS |
AACTTCTCGGTGTGCTGAGA+GGG | 0.491058 | 4.3:+19749732 | MS.gene28747:CDS |
GAACCAAGATGGATAAGCTT+CGG | 0.493462 | 4.3:+19749759 | MS.gene28747:CDS |
CCGTTGGTTCATGATGTGCT+TGG | 0.493871 | 4.3:+19749302 | MS.gene28747:CDS |
AAGTCATGCTGAATCGCAAC+CGG | 0.494196 | 4.3:-19749269 | None:intergenic |
GTTCCATATATAATATGCTT+GGG | 0.496796 | 4.3:-19750259 | None:intergenic |
AATCTTAATGATCCGTCTGC+TGG | 0.498721 | 4.3:+19748999 | MS.gene28747:CDS |
TGCTTCCTCTCAGTCAGCTC+AGG | 0.499034 | 4.3:-19749587 | None:intergenic |
AAGATGGGTTTGGGTAATGC+TGG | 0.500440 | 4.3:+19750337 | MS.gene28747:CDS |
ACGGCGGGAACATCGTGAAC+GGG | 0.500575 | 4.3:-19748732 | None:intergenic |
TAAGAGTCTGAATGTTTCGT+TGG | 0.502406 | 4.3:+19749901 | MS.gene28747:CDS |
GTTGGAGTTTCCTGAGGTTG+CGG | 0.502834 | 4.3:+19749421 | MS.gene28747:CDS |
GCGAGGTACATATCTGTCTC+AGG | 0.503900 | 4.3:-19750088 | None:intergenic |
TGGCTACCGCGTTGGATCAA+AGG | 0.505080 | 4.3:+19749138 | MS.gene28747:CDS |
ATCACGGTGCGGAGTTTGAT+GGG | 0.508088 | 4.3:+19749513 | MS.gene28747:CDS |
CTCGGTGTGCTGAGAGGGAA+GGG | 0.508637 | 4.3:+19749737 | MS.gene28747:CDS |
ATTGAAAGGAGTGAACTTCT+CGG | 0.509013 | 4.3:+19749719 | MS.gene28747:CDS |
AATTGGTTGAACGAAATAAA+CGG | 0.509297 | 4.3:-19748751 | None:intergenic |
TCCACAGCCTCCACTTCAGT+CGG | 0.509720 | 4.3:-19749821 | None:intergenic |
CTTGCTCCTGAACCAGACTT+AGG | 0.509749 | 4.3:-19750127 | None:intergenic |
CAGAAGTAATATTGTTGACT+GGG | 0.512458 | 4.3:+19749943 | MS.gene28747:CDS |
GTGTTCAAGGGGAGAAAGGT+GGG | 0.520944 | 4.3:+19749345 | MS.gene28747:CDS |
TTCGATTCAGCGAATTTCAA+AGG | 0.521180 | 4.3:+19748902 | MS.gene28747:CDS |
TCCGACTGAAGTGGAGGCTG+TGG | 0.522299 | 4.3:+19749820 | MS.gene28747:CDS |
TTGGGTTGCAAATGGTGGGT+TGG | 0.524353 | 4.3:+19749403 | MS.gene28747:CDS |
AGTGTTCAAGGGGAGAAAGG+TGG | 0.524971 | 4.3:+19749344 | MS.gene28747:CDS |
TTGTTGTTCCTGTTATTGGT+TGG | 0.526111 | 4.3:-19748566 | None:intergenic |
GTCATTAGGTGTCCGCGTGG+TGG | 0.527587 | 4.3:+19749101 | MS.gene28747:CDS |
ACGTTGTTGGGGAAGAAGAT+GGG | 0.529725 | 4.3:+19750322 | MS.gene28747:CDS |
CATCATGTATCTGATTTCAT+CGG | 0.529783 | 4.3:+19749787 | MS.gene28747:CDS |
TGAATAGGTTGAGTGTTCAA+GGG | 0.531169 | 4.3:+19749333 | MS.gene28747:CDS |
CACATCTGAACTACTGAGGT+GGG | 0.531717 | 4.3:-19750366 | None:intergenic |
GAGAGGGAAGGGAACCAAGA+TGG | 0.533226 | 4.3:+19749748 | MS.gene28747:CDS |
TGGTTAGAGGGAGTATTGAA+AGG | 0.535987 | 4.3:+19749705 | MS.gene28747:CDS |
TAGTGACAGACAGCTAGCTT+TGG | 0.538193 | 4.3:+19750027 | MS.gene28747:CDS |
TGACTTTAGGTATAGGCCGT+TGG | 0.538298 | 4.3:+19749286 | MS.gene28747:CDS |
TCTTGAGTTTGTTACACTTG+AGG | 0.539068 | 4.3:+19748938 | MS.gene28747:CDS |
TGGGATGAGATCTTATGAGT+TGG | 0.539391 | 4.3:+19749364 | MS.gene28747:CDS |
GCTTGATTCATATGCTAAGA+AGG | 0.541789 | 4.3:+19749670 | MS.gene28747:CDS |
AGAATGACATGATGGTTAGA+GGG | 0.546127 | 4.3:+19749693 | MS.gene28747:CDS |
CGATGAAATCAGATACATGA+TGG | 0.547327 | 4.3:-19749786 | None:intergenic |
TGTGTTGTTGGGTGAGATCA+AGG | 0.549244 | 4.3:+19749640 | MS.gene28747:CDS |
TGAACCAGACTTAGGAGCAC+GGG | 0.551638 | 4.3:-19750119 | None:intergenic |
CTGAATCGAATCCGAAGCTA+TGG | 0.553466 | 4.3:-19748889 | None:intergenic |
CGGTGCGGAGTTTGATGGGA+CGG | 0.555506 | 4.3:+19749517 | MS.gene28747:CDS |
AACTATTAATCCGACTGAAG+TGG | 0.560642 | 4.3:+19749811 | MS.gene28747:CDS |
TCTCGGTGTGCTGAGAGGGA+AGG | 0.564630 | 4.3:+19749736 | MS.gene28747:CDS |
GCGGTAGCCACCATCTCAGC+CGG | 0.573670 | 4.3:-19749125 | None:intergenic |
GATGAGGTCAATAAGAGGAC+TGG | 0.574212 | 4.3:+19749485 | MS.gene28747:CDS |
GAATAGGTTGAGTGTTCAAG+GGG | 0.576422 | 4.3:+19749334 | MS.gene28747:CDS |
TGCTGGTGACCGTGAAATTG+AGG | 0.576895 | 4.3:+19749016 | MS.gene28747:CDS |
AACGGCGGGAACATCGTGAA+CGG | 0.577620 | 4.3:-19748733 | None:intergenic |
GTTTGCGATCTTTGTCAATG+AGG | 0.578315 | 4.3:-19748710 | None:intergenic |
AAGAGGACTGGAGGGAATCA+CGG | 0.579431 | 4.3:+19749497 | MS.gene28747:CDS |
TGGTGGGCCGGCTGAGATGG+TGG | 0.580027 | 4.3:+19749118 | MS.gene28747:CDS |
ATGTTGATGAGGTCAATAAG+AGG | 0.580113 | 4.3:+19749480 | MS.gene28747:CDS |
CGCGTTGGATCAAAGGATCA+GGG | 0.580476 | 4.3:+19749145 | MS.gene28747:CDS |
CCACGCGGACACCTAATGAC+CGG | 0.582575 | 4.3:-19749098 | None:intergenic |
TGAGATGGTGGCTACCGCGT+TGG | 0.586343 | 4.3:+19749130 | MS.gene28747:CDS |
TCACATCTGAACTACTGAGG+TGG | 0.588791 | 4.3:-19750367 | None:intergenic |
GAAGCAAGATCTTCAAGCAT+CGG | 0.589526 | 4.3:-19748861 | None:intergenic |
TCGATGTTGAGAAATTGAGA+TGG | 0.590144 | 4.3:-19748830 | None:intergenic |
GAGGTCAATAAGAGGACTGG+AGG | 0.591483 | 4.3:+19749488 | MS.gene28747:CDS |
TAGAGCAGCTTACGTTGTTG+GGG | 0.594589 | 4.3:+19750311 | MS.gene28747:CDS |
AGATCTTCAAGCATCGGACG+AGG | 0.598135 | 4.3:-19748855 | None:intergenic |
TCAATAAGTGCAGTGACTGC+TGG | 0.598945 | 4.3:+19749986 | MS.gene28747:CDS |
GGTTGAACGAAATAAACGGC+GGG | 0.599421 | 4.3:-19748747 | None:intergenic |
TAAGAAGGAGAATGACATGA+TGG | 0.614444 | 4.3:+19749685 | MS.gene28747:CDS |
TGGTGGGTTGGAGTTTCCTG+AGG | 0.614604 | 4.3:+19749415 | MS.gene28747:CDS |
GGAGTTTCCTGAGGTTGCGG+TGG | 0.617381 | 4.3:+19749424 | MS.gene28747:CDS |
TGCTTGAAGATCTTGCTTCG+GGG | 0.618864 | 4.3:+19748865 | MS.gene28747:CDS |
AAATTGAGGAGATTGTTGAG+AGG | 0.621276 | 4.3:+19749030 | MS.gene28747:CDS |
AAGTCTGGTTCAGGAGCAAG+TGG | 0.621847 | 4.3:+19750130 | MS.gene28747:CDS |
TATTAATCCGACTGAAGTGG+AGG | 0.623131 | 4.3:+19749814 | MS.gene28747:CDS |
GTATAAGAATGATGTTGATG+AGG | 0.625258 | 4.3:+19749469 | MS.gene28747:CDS |
CCATATATAATATGCTTGGG+AGG | 0.626100 | 4.3:-19750256 | None:intergenic |
GTCAAAGATCTTCGTAAACA+CGG | 0.631895 | 4.3:+19748672 | MS.gene28747:CDS |
CTGAACCAGACTTAGGAGCA+CGG | 0.640321 | 4.3:-19750120 | None:intergenic |
ATTTCACGGTCACCAGCAGA+CGG | 0.640573 | 4.3:-19749011 | None:intergenic |
AGGTCAATAAGAGGACTGGA+GGG | 0.644829 | 4.3:+19749489 | MS.gene28747:CDS |
CCAAGCACATCATGAACCAA+CGG | 0.646610 | 4.3:-19749302 | None:intergenic |
CACGAAGCATTTGATGAATG+CGG | 0.648032 | 4.3:+19749553 | MS.gene28747:CDS |
ACATCTGAACTACTGAGGTG+GGG | 0.648073 | 4.3:-19750365 | None:intergenic |
GAACTTCTCGGTGTGCTGAG+AGG | 0.648753 | 4.3:+19749731 | MS.gene28747:CDS |
ACAGACAGCTAGCTTTGGCG+AGG | 0.674437 | 4.3:+19750032 | MS.gene28747:CDS |
CGTTACCTGAGCTGACTGAG+AGG | 0.681656 | 4.3:+19749582 | MS.gene28747:CDS |
CATTCACATCTGAACTACTG+AGG | 0.684802 | 4.3:-19750370 | None:intergenic |
ATCTCAGCCGGCCCACCACG+CGG | 0.700567 | 4.3:-19749113 | None:intergenic |
GACTGGAGGGAATCACGGTG+CGG | 0.708144 | 4.3:+19749502 | MS.gene28747:CDS |
GAGCACGGGGATCAAAAGCG+AGG | 0.710613 | 4.3:-19750105 | None:intergenic |
AACAGCGCTGAGAGAGTGTG+AGG | 0.717344 | 4.3:+19749844 | MS.gene28747:CDS |
CCTGATCCTTTGATCCAACG+CGG | 0.725049 | 4.3:-19749144 | None:intergenic |
GAACCAGACTTAGGAGCACG+GGG | 0.729204 | 4.3:-19750118 | None:intergenic |
CCGGTCATTAGGTGTCCGCG+TGG | 0.739505 | 4.3:+19749098 | MS.gene28747:CDS |
TGTTGGGTGAGATCAAGGAG+AGG | 0.746514 | 4.3:+19749645 | MS.gene28747:CDS |
TGGTTGAACGAAATAAACGG+CGG | 0.753853 | 4.3:-19748748 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGAATAATTTGTTTACTGA+AGG | + | chr4.3:19749182-19749201 | MS.gene28747:CDS | 20.0% |
! | AAAACAATTGCTTCCTTAAA+TGG | - | chr4.3:19750172-19750191 | None:intergenic | 25.0% |
! | AATTGGTTGAACGAAATAAA+CGG | - | chr4.3:19748754-19748773 | None:intergenic | 25.0% |
! | AGATCTTTGACATGAATTAA+CGG | - | chr4.3:19748663-19748682 | None:intergenic | 25.0% |
! | GTTCCATATATAATATGCTT+GGG | - | chr4.3:19750262-19750281 | None:intergenic | 25.0% |
!!! | AATAATTTGTTTACTGAAGG+TGG | + | chr4.3:19749185-19749204 | MS.gene28747:CDS | 25.0% |
!!! | ATAATTTGTTTACTGAAGGT+GGG | + | chr4.3:19749186-19749205 | MS.gene28747:CDS | 25.0% |
!!! | TAATGGTTTGTTTTGTGTTT+TGG | + | chr4.3:19749058-19749077 | MS.gene28747:CDS | 25.0% |
!!! | TGAGGATAATTTGTTTTCAT+TGG | + | chr4.3:19748956-19748975 | MS.gene28747:CDS | 25.0% |
ATTGTTGAGAGGATTGTTAA+TGG | + | chr4.3:19749041-19749060 | MS.gene28747:CDS | 30.0% | |
CATCATGTATCTGATTTCAT+CGG | + | chr4.3:19749787-19749806 | MS.gene28747:CDS | 30.0% | |
CCATTTAAAAGGTCCATTTA+AGG | + | chr4.3:19750156-19750175 | MS.gene28747:CDS | 30.0% | |
CGTTCCATATATAATATGCT+TGG | - | chr4.3:19750263-19750282 | None:intergenic | 30.0% | |
CTATCAAAAACACACAAAAC+CGG | - | chr4.3:19749236-19749255 | None:intergenic | 30.0% | |
GTATAAGAATGATGTTGATG+AGG | + | chr4.3:19749469-19749488 | MS.gene28747:CDS | 30.0% | |
! | ATTTTGTTAGTTCGTTTCAG+AGG | + | chr4.3:19749210-19749229 | MS.gene28747:CDS | 30.0% |
! | CAGAAGTAATATTGTTGACT+GGG | + | chr4.3:19749943-19749962 | MS.gene28747:CDS | 30.0% |
! | CCTTAAATGGACCTTTTAAA+TGG | - | chr4.3:19750159-19750178 | None:intergenic | 30.0% |
! | GAAGCAATTGTTTTCATGAT+TGG | + | chr4.3:19750178-19750197 | MS.gene28747:CDS | 30.0% |
AAATTGAGGAGATTGTTGAG+AGG | + | chr4.3:19749030-19749049 | MS.gene28747:CDS | 35.0% | |
AACCTAAACCAACCAATAAC+AGG | + | chr4.3:19748558-19748577 | MS.gene28747:CDS | 35.0% | |
AACTATTAATCCGACTGAAG+TGG | + | chr4.3:19749811-19749830 | MS.gene28747:CDS | 35.0% | |
AGAATGACATGATGGTTAGA+GGG | + | chr4.3:19749693-19749712 | MS.gene28747:CDS | 35.0% | |
ATTGAAAGGAGTGAACTTCT+CGG | + | chr4.3:19749719-19749738 | MS.gene28747:CDS | 35.0% | |
CAACAATCTCCTCAATTTCA+CGG | - | chr4.3:19749028-19749047 | None:intergenic | 35.0% | |
CCATATATAATATGCTTGGG+AGG | - | chr4.3:19750259-19750278 | None:intergenic | 35.0% | |
CCTCCCAAGCATATTATATA+TGG | + | chr4.3:19750256-19750275 | MS.gene28747:CDS | 35.0% | |
CGATGAAATCAGATACATGA+TGG | - | chr4.3:19749789-19749808 | None:intergenic | 35.0% | |
CGTTGAACATTGGATTGAAT+TGG | - | chr4.3:19748771-19748790 | None:intergenic | 35.0% | |
GACAGAATTTGTCGTAGATA+AGG | - | chr4.3:19748626-19748645 | None:intergenic | 35.0% | |
GCAGAAGTAATATTGTTGAC+TGG | + | chr4.3:19749942-19749961 | MS.gene28747:CDS | 35.0% | |
GCTTGATTCATATGCTAAGA+AGG | + | chr4.3:19749670-19749689 | MS.gene28747:CDS | 35.0% | |
GTCAAAGATCTTCGTAAACA+CGG | + | chr4.3:19748672-19748691 | MS.gene28747:CDS | 35.0% | |
TAACATTGCTACTGTGTTGT+TGG | + | chr4.3:19749628-19749647 | MS.gene28747:CDS | 35.0% | |
TAAGAAGGAGAATGACATGA+TGG | + | chr4.3:19749685-19749704 | MS.gene28747:CDS | 35.0% | |
TAAGAGTCTGAATGTTTCGT+TGG | + | chr4.3:19749901-19749920 | MS.gene28747:CDS | 35.0% | |
TACATATCTGTCTCAGGATT+TGG | - | chr4.3:19750085-19750104 | None:intergenic | 35.0% | |
TCGATGTTGAGAAATTGAGA+TGG | - | chr4.3:19748833-19748852 | None:intergenic | 35.0% | |
TTCAGCATGACTTTAGGTAT+AGG | + | chr4.3:19749279-19749298 | MS.gene28747:CDS | 35.0% | |
TTCGATTCAGCGAATTTCAA+AGG | + | chr4.3:19748902-19748921 | MS.gene28747:CDS | 35.0% | |
! | AACATTGCTACTGTGTTGTT+GGG | + | chr4.3:19749629-19749648 | MS.gene28747:CDS | 35.0% |
! | ATGTTGATGAGGTCAATAAG+AGG | + | chr4.3:19749480-19749499 | MS.gene28747:CDS | 35.0% |
! | ATTGTTTTCATGATTGGTGG+TGG | + | chr4.3:19750184-19750203 | MS.gene28747:CDS | 35.0% |
! | GCAATTGTTTTCATGATTGG+TGG | + | chr4.3:19750181-19750200 | MS.gene28747:CDS | 35.0% |
! | GTTGTTGTTGTTCCTGTTAT+TGG | - | chr4.3:19748573-19748592 | None:intergenic | 35.0% |
! | TGAATAGGTTGAGTGTTCAA+GGG | + | chr4.3:19749333-19749352 | MS.gene28747:CDS | 35.0% |
! | TTGAATAGGTTGAGTGTTCA+AGG | + | chr4.3:19749332-19749351 | MS.gene28747:CDS | 35.0% |
! | TTGTTGTTCCTGTTATTGGT+TGG | - | chr4.3:19748569-19748588 | None:intergenic | 35.0% |
!! | CGGTTTTGTGTGTTTTTGAT+AGG | + | chr4.3:19749234-19749253 | MS.gene28747:CDS | 35.0% |
!! | TCTTGAGTTTGTTACACTTG+AGG | + | chr4.3:19748938-19748957 | MS.gene28747:CDS | 35.0% |
!! | TTCCTGTTATTGGTTGGTTT+AGG | - | chr4.3:19748563-19748582 | None:intergenic | 35.0% |
AAACCGAAGCTTATCCATCT+TGG | - | chr4.3:19749765-19749784 | None:intergenic | 40.0% | |
AATCTTAATGATCCGTCTGC+TGG | + | chr4.3:19748999-19749018 | MS.gene28747:CDS | 40.0% | |
ACTGTTGAAGCCTTGATTGA+AGG | + | chr4.3:19750055-19750074 | MS.gene28747:CDS | 40.0% | |
ATGCTTGAAGATCTTGCTTC+GGG | + | chr4.3:19748864-19748883 | MS.gene28747:CDS | 40.0% | |
ATTTGGTCTCCCTTCAATCA+AGG | - | chr4.3:19750068-19750087 | None:intergenic | 40.0% | |
CTGTTGAAGCCTTGATTGAA+GGG | + | chr4.3:19750056-19750075 | MS.gene28747:CDS | 40.0% | |
GAACCAAGATGGATAAGCTT+CGG | + | chr4.3:19749759-19749778 | MS.gene28747:CDS | 40.0% | |
GAAGCAAGATCTTCAAGCAT+CGG | - | chr4.3:19748864-19748883 | None:intergenic | 40.0% | |
GAGAATGACATGATGGTTAG+AGG | + | chr4.3:19749692-19749711 | MS.gene28747:CDS | 40.0% | |
GATGCTTGAAGATCTTGCTT+CGG | + | chr4.3:19748863-19748882 | MS.gene28747:CDS | 40.0% | |
GCAAGTGGCAACCATTTAAA+AGG | + | chr4.3:19750145-19750164 | MS.gene28747:CDS | 40.0% | |
GTTTGCGATCTTTGTCAATG+AGG | - | chr4.3:19748713-19748732 | None:intergenic | 40.0% | |
TATTAATCCGACTGAAGTGG+AGG | + | chr4.3:19749814-19749833 | MS.gene28747:CDS | 40.0% | |
TGCGATGATTCGTTGAACAT+TGG | - | chr4.3:19748781-19748800 | None:intergenic | 40.0% | |
TGGGATGAGATCTTATGAGT+TGG | + | chr4.3:19749364-19749383 | MS.gene28747:CDS | 40.0% | |
TGGTTGAACGAAATAAACGG+CGG | - | chr4.3:19748751-19748770 | None:intergenic | 40.0% | |
TTGCGATTCAGCATGACTTT+AGG | + | chr4.3:19749273-19749292 | MS.gene28747:CDS | 40.0% | |
! | CACGAAGCATTTGATGAATG+CGG | + | chr4.3:19749553-19749572 | MS.gene28747:CDS | 40.0% |
! | GAATAGGTTGAGTGTTCAAG+GGG | + | chr4.3:19749334-19749353 | MS.gene28747:CDS | 40.0% |
! | TGATAGGAATTTTGAGCTGC+CGG | + | chr4.3:19749250-19749269 | MS.gene28747:CDS | 40.0% |
! | TTTGATGGGACGGATTTGAT+TGG | + | chr4.3:19749527-19749546 | MS.gene28747:CDS | 40.0% |
!! | GACAGAACTTTTGACTGGAA+TGG | + | chr4.3:19750282-19750301 | MS.gene28747:CDS | 40.0% |
!! | TGCTTGGGTTGAAGTTGAAT+AGG | + | chr4.3:19749318-19749337 | MS.gene28747:CDS | 40.0% |
!! | TGGTTAGAGGGAGTATTGAA+AGG | + | chr4.3:19749705-19749724 | MS.gene28747:CDS | 40.0% |
!!! | GATTCGTTTTGGGTTGCAAA+TGG | + | chr4.3:19749395-19749414 | MS.gene28747:CDS | 40.0% |
!!! | GGATAGTGCTGATTCGTTTT+GGG | + | chr4.3:19749385-19749404 | MS.gene28747:CDS | 40.0% |
!!! | TGGATAGTGCTGATTCGTTT+TGG | + | chr4.3:19749384-19749403 | MS.gene28747:CDS | 40.0% |
AAGTCATGCTGAATCGCAAC+CGG | - | chr4.3:19749272-19749291 | None:intergenic | 45.0% | |
ACGTTGTTGGGGAAGAAGAT+GGG | + | chr4.3:19750322-19750341 | MS.gene28747:CDS | 45.0% | |
AGGTCAATAAGAGGACTGGA+GGG | + | chr4.3:19749489-19749508 | MS.gene28747:CDS | 45.0% | |
CCAAGCACATCATGAACCAA+CGG | - | chr4.3:19749305-19749324 | None:intergenic | 45.0% | |
CTGAATCGAATCCGAAGCTA+TGG | - | chr4.3:19748892-19748911 | None:intergenic | 45.0% | |
GATGAGGTCAATAAGAGGAC+TGG | + | chr4.3:19749485-19749504 | MS.gene28747:CDS | 45.0% | |
GGTTGAACGAAATAAACGGC+GGG | - | chr4.3:19748750-19748769 | None:intergenic | 45.0% | |
GTAGAGCAGCTTACGTTGTT+GGG | + | chr4.3:19750310-19750329 | MS.gene28747:CDS | 45.0% | |
TACGTTGTTGGGGAAGAAGA+TGG | + | chr4.3:19750321-19750340 | MS.gene28747:CDS | 45.0% | |
TAGAGCAGCTTACGTTGTTG+GGG | + | chr4.3:19750311-19750330 | MS.gene28747:CDS | 45.0% | |
TCAATAAGTGCAGTGACTGC+TGG | + | chr4.3:19749986-19750005 | MS.gene28747:CDS | 45.0% | |
TGACTGTCCATAGAGCTTCT+CGG | - | chr4.3:19749969-19749988 | None:intergenic | 45.0% | |
TGACTTTAGGTATAGGCCGT+TGG | + | chr4.3:19749286-19749305 | MS.gene28747:CDS | 45.0% | |
TGCTTGAAGATCTTGCTTCG+GGG | + | chr4.3:19748865-19748884 | MS.gene28747:CDS | 45.0% | |
TGTAGAGCAGCTTACGTTGT+TGG | + | chr4.3:19750309-19750328 | MS.gene28747:CDS | 45.0% | |
TGTTAGTTCGTTTCAGAGGC+CGG | + | chr4.3:19749214-19749233 | MS.gene28747:CDS | 45.0% | |
TTGAGTGTTCAAGGGGAGAA+AGG | + | chr4.3:19749341-19749360 | MS.gene28747:CDS | 45.0% | |
! | AAGATGGGTTTGGGTAATGC+TGG | + | chr4.3:19750337-19750356 | MS.gene28747:CDS | 45.0% |
! | GGAACGACAGAACTTTTGAC+TGG | + | chr4.3:19750277-19750296 | MS.gene28747:CDS | 45.0% |
! | TAGTGACAGACAGCTAGCTT+TGG | + | chr4.3:19750027-19750046 | MS.gene28747:CDS | 45.0% |
! | TGTGTTGTTGGGTGAGATCA+AGG | + | chr4.3:19749640-19749659 | MS.gene28747:CDS | 45.0% |
! | TTGGGGAAGAAGATGGGTTT+GGG | + | chr4.3:19750328-19750347 | MS.gene28747:CDS | 45.0% |
!! | CGTTGGTTCATGATGTGCTT+GGG | + | chr4.3:19749303-19749322 | MS.gene28747:CDS | 45.0% |
!! | TTGGTGTTGTTCCGGTCATT+AGG | + | chr4.3:19749087-19749106 | MS.gene28747:CDS | 45.0% |
!!! | CGTTTTGGGTTGCAAATGGT+GGG | + | chr4.3:19749399-19749418 | MS.gene28747:CDS | 45.0% |
!!! | TCGTTTTGGGTTGCAAATGG+TGG | + | chr4.3:19749398-19749417 | MS.gene28747:CDS | 45.0% |
!!! | TTTTGTGTTTTGGCGACGCT+TGG | + | chr4.3:19749068-19749087 | MS.gene28747:CDS | 45.0% |
AAGAGGACTGGAGGGAATCA+CGG | + | chr4.3:19749497-19749516 | MS.gene28747:CDS | 50.0% | |
AATCACGGTGCGGAGTTTGA+TGG | + | chr4.3:19749512-19749531 | MS.gene28747:CDS | 50.0% | |
AGTGTTCAAGGGGAGAAAGG+TGG | + | chr4.3:19749344-19749363 | MS.gene28747:CDS | 50.0% | |
ATCACGGTGCGGAGTTTGAT+GGG | + | chr4.3:19749513-19749532 | MS.gene28747:CDS | 50.0% | |
ATTTCACGGTCACCAGCAGA+CGG | - | chr4.3:19749014-19749033 | None:intergenic | 50.0% | |
CCTGATCCTTTGATCCAACG+CGG | - | chr4.3:19749147-19749166 | None:intergenic | 50.0% | |
CGCGTTGGATCAAAGGATCA+GGG | + | chr4.3:19749145-19749164 | MS.gene28747:CDS | 50.0% | |
CTGAACCAGACTTAGGAGCA+CGG | - | chr4.3:19750123-19750142 | None:intergenic | 50.0% | |
CTTGCTCCTGAACCAGACTT+AGG | - | chr4.3:19750130-19750149 | None:intergenic | 50.0% | |
GAGGTCAATAAGAGGACTGG+AGG | + | chr4.3:19749488-19749507 | MS.gene28747:CDS | 50.0% | |
GCGAGGTACATATCTGTCTC+AGG | - | chr4.3:19750091-19750110 | None:intergenic | 50.0% | |
GTGTTCAAGGGGAGAAAGGT+GGG | + | chr4.3:19749345-19749364 | MS.gene28747:CDS | 50.0% | |
GTTGGAGTTTCCTGAGGTTG+CGG | + | chr4.3:19749421-19749440 | MS.gene28747:CDS | 50.0% | |
TGCTGGTGACCGTGAAATTG+AGG | + | chr4.3:19749016-19749035 | MS.gene28747:CDS | 50.0% | |
TGTTGGGTGAGATCAAGGAG+AGG | + | chr4.3:19749645-19749664 | MS.gene28747:CDS | 50.0% | |
! | AACTTCTCGGTGTGCTGAGA+GGG | + | chr4.3:19749732-19749751 | MS.gene28747:CDS | 50.0% |
! | AAGTCTGGTTCAGGAGCAAG+TGG | + | chr4.3:19750130-19750149 | MS.gene28747:CDS | 50.0% |
! | GTTGGGGAAGAAGATGGGTT+TGG | + | chr4.3:19750327-19750346 | MS.gene28747:CDS | 50.0% |
! | TGAACCAGACTTAGGAGCAC+GGG | - | chr4.3:19750122-19750141 | None:intergenic | 50.0% |
!! | AGATCTTCAAGCATCGGACG+AGG | - | chr4.3:19748858-19748877 | None:intergenic | 50.0% |
!! | CCGTTGGTTCATGATGTGCT+TGG | + | chr4.3:19749302-19749321 | MS.gene28747:CDS | 50.0% |
!! | TTGGGTTGCAAATGGTGGGT+TGG | + | chr4.3:19749403-19749422 | MS.gene28747:CDS | 50.0% |
AACGGCGGGAACATCGTGAA+CGG | - | chr4.3:19748736-19748755 | None:intergenic | 55.0% | |
CCGCGTTGGATCAAAGGATC+AGG | + | chr4.3:19749144-19749163 | MS.gene28747:CDS | 55.0% | |
CGTTACCTGAGCTGACTGAG+AGG | + | chr4.3:19749582-19749601 | MS.gene28747:CDS | 55.0% | |
GAGAGGGAAGGGAACCAAGA+TGG | + | chr4.3:19749748-19749767 | MS.gene28747:CDS | 55.0% | |
TCAATCTCCACCGCAACCTC+AGG | - | chr4.3:19749434-19749453 | None:intergenic | 55.0% | |
TCATTAGGTGTCCGCGTGGT+GGG | + | chr4.3:19749102-19749121 | MS.gene28747:CDS | 55.0% | |
TCCACAGCCTCCACTTCAGT+CGG | - | chr4.3:19749824-19749843 | None:intergenic | 55.0% | |
TGCTTCCTCTCAGTCAGCTC+AGG | - | chr4.3:19749590-19749609 | None:intergenic | 55.0% | |
TGCTTCGGGGACCATAGCTT+CGG | + | chr4.3:19748878-19748897 | MS.gene28747:CDS | 55.0% | |
TGGCTACCGCGTTGGATCAA+AGG | + | chr4.3:19749138-19749157 | MS.gene28747:CDS | 55.0% | |
! | AACAGCGCTGAGAGAGTGTG+AGG | + | chr4.3:19749844-19749863 | MS.gene28747:CDS | 55.0% |
! | CGTGCTCCTAAGTCTGGTTC+AGG | + | chr4.3:19750121-19750140 | MS.gene28747:CDS | 55.0% |
! | GAACCAGACTTAGGAGCACG+GGG | - | chr4.3:19750121-19750140 | None:intergenic | 55.0% |
! | GAACTTCTCGGTGTGCTGAG+AGG | + | chr4.3:19749731-19749750 | MS.gene28747:CDS | 55.0% |
!! | ACAGACAGCTAGCTTTGGCG+AGG | + | chr4.3:19750032-19750051 | MS.gene28747:CDS | 55.0% |
!! | TGGTGGGTTGGAGTTTCCTG+AGG | + | chr4.3:19749415-19749434 | MS.gene28747:CDS | 55.0% |
ACGGCGGGAACATCGTGAAC+GGG | - | chr4.3:19748735-19748754 | None:intergenic | 60.0% | |
CCACGCGGACACCTAATGAC+CGG | - | chr4.3:19749101-19749120 | None:intergenic | 60.0% | |
CGGTGCGGAGTTTGATGGGA+CGG | + | chr4.3:19749517-19749536 | MS.gene28747:CDS | 60.0% | |
GACTGGAGGGAATCACGGTG+CGG | + | chr4.3:19749502-19749521 | MS.gene28747:CDS | 60.0% | |
GACTGGGCCGAGAAGCTCTA+TGG | + | chr4.3:19749959-19749978 | MS.gene28747:CDS | 60.0% | |
GAGCACGGGGATCAAAAGCG+AGG | - | chr4.3:19750108-19750127 | None:intergenic | 60.0% | |
GATCCCCGTGCTCCTAAGTC+TGG | + | chr4.3:19750115-19750134 | MS.gene28747:CDS | 60.0% | |
GGAGTTTCCTGAGGTTGCGG+TGG | + | chr4.3:19749424-19749443 | MS.gene28747:CDS | 60.0% | |
GTCATTAGGTGTCCGCGTGG+TGG | + | chr4.3:19749101-19749120 | MS.gene28747:CDS | 60.0% | |
TCCGACTGAAGTGGAGGCTG+TGG | + | chr4.3:19749820-19749839 | MS.gene28747:CDS | 60.0% | |
! | CTCGGTGTGCTGAGAGGGAA+GGG | + | chr4.3:19749737-19749756 | MS.gene28747:CDS | 60.0% |
! | TCTCGGTGTGCTGAGAGGGA+AGG | + | chr4.3:19749736-19749755 | MS.gene28747:CDS | 60.0% |
! | TGAGATGGTGGCTACCGCGT+TGG | + | chr4.3:19749130-19749149 | MS.gene28747:CDS | 60.0% |
!! | GGCGACGCTTGGTGTTGTTC+CGG | + | chr4.3:19749079-19749098 | MS.gene28747:CDS | 60.0% |
CCGGTCATTAGGTGTCCGCG+TGG | + | chr4.3:19749098-19749117 | MS.gene28747:CDS | 65.0% | |
GCGGTAGCCACCATCTCAGC+CGG | - | chr4.3:19749128-19749147 | None:intergenic | 65.0% | |
ATCTCAGCCGGCCCACCACG+CGG | - | chr4.3:19749116-19749135 | None:intergenic | 70.0% | |
! | TGGTGGGCCGGCTGAGATGG+TGG | + | chr4.3:19749118-19749137 | MS.gene28747:CDS | 70.0% |
!! | TAGGTGTCCGCGTGGTGGGC+CGG | + | chr4.3:19749106-19749125 | MS.gene28747:CDS | 70.0% |
!! | GCGTGGTGGGCCGGCTGAGA+TGG | + | chr4.3:19749115-19749134 | MS.gene28747:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 19748552 | 19750378 | 19748552 | ID=MS.gene28747 |
chr4.3 | mRNA | 19748552 | 19750378 | 19748552 | ID=MS.gene28747.t1;Parent=MS.gene28747 |
chr4.3 | exon | 19748552 | 19750378 | 19748552 | ID=MS.gene28747.t1.exon1;Parent=MS.gene28747.t1 |
chr4.3 | CDS | 19748552 | 19750378 | 19748552 | ID=cds.MS.gene28747.t1;Parent=MS.gene28747.t1 |
Gene Sequence |
Protein sequence |