Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28860.t1 | RHN68704.1 | 91.6 | 261 | 22 | 0 | 1 | 261 | 1 | 261 | 1.40E-125 | 459.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28860.t1 | F4HVJ3 | 32.1 | 265 | 160 | 6 | 1 | 247 | 1 | 263 | 2.1e-29 | 131.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28860.t1 | A0A396IWE4 | 91.6 | 261 | 22 | 0 | 1 | 261 | 1 | 261 | 1.0e-125 | 459.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050213 | MS.gene28860 | 0.803588 | 3.24E-49 | -1.69E-46 |
| MS.gene050361 | MS.gene28860 | 0.804763 | 1.85E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene28860 | 0.823207 | 1.57E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene28860 | 0.807098 | 5.97E-50 | -1.69E-46 |
| MS.gene051209 | MS.gene28860 | 0.805915 | 1.06E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene28860 | 0.825578 | 4.34E-54 | -1.69E-46 |
| MS.gene053620 | MS.gene28860 | 0.802282 | 6.04E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene28860 | 0.830196 | 3.37E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene28860 | 0.803779 | 2.96E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28860.t1 | MTR_3g076570 | 95.161 | 248 | 12 | 0 | 1 | 248 | 1 | 248 | 8.97e-165 | 464 |
| MS.gene28860.t1 | MTR_3g076570 | 95.161 | 248 | 12 | 0 | 1 | 248 | 1 | 248 | 8.42e-164 | 465 |
| MS.gene28860.t1 | MTR_3g076570 | 95.161 | 248 | 12 | 0 | 1 | 248 | 1 | 248 | 6.29e-163 | 465 |
| MS.gene28860.t1 | MTR_4g090465 | 42.520 | 127 | 41 | 4 | 123 | 248 | 7 | 102 | 5.89e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28860.t1 | AT1G67960 | 34.944 | 269 | 149 | 10 | 1 | 248 | 1 | 264 | 3.31e-35 | 133 |
Find 70 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCGATCGGGATCGGATT+TGG | 0.255028 | 3.1:+62873647 | None:intergenic |
| AAATTCAGAATCAGATGTTT+AGG | 0.274497 | 3.1:-62871995 | MS.gene28860:CDS |
| GTCTCCTGTAGCATATTTCT+TGG | 0.308653 | 3.1:-62872255 | MS.gene28860:CDS |
| TGTGGATTGGAAGCGAATTA+TGG | 0.309961 | 3.1:-62873187 | MS.gene28860:CDS |
| CGTTACATACTATTCCGTTT+TGG | 0.343900 | 3.1:+62873541 | None:intergenic |
| GTATGTAACGGTAACGGTTT+CGG | 0.348543 | 3.1:-62873528 | MS.gene28860:CDS |
| AATTCAGAATCAGATGTTTA+GGG | 0.377659 | 3.1:-62871994 | MS.gene28860:CDS |
| TTCTGAGGATTTAGTTGCTT+CGG | 0.384382 | 3.1:-62873343 | MS.gene28860:CDS |
| CCGGTGTGGATCAACGGAAT+TGG | 0.385009 | 3.1:+62873581 | None:intergenic |
| GGATCGGCGATTTAGTTTCC+CGG | 0.402794 | 3.1:+62873562 | None:intergenic |
| CTTCCAATCCACAGATTCAA+TGG | 0.402990 | 3.1:+62873197 | None:intergenic |
| AGTGTGGAAGGGTTTAATTT+CGG | 0.421271 | 3.1:-62873399 | MS.gene28860:CDS |
| TTACGAAGCACAACTACTCT+TGG | 0.447253 | 3.1:-62872209 | MS.gene28860:CDS |
| TTGGCCATGGCGTTGAGAAC+CGG | 0.448903 | 3.1:-62873744 | None:intergenic |
| CTTGCCATGGAGATGCGAAT+TGG | 0.452927 | 3.1:-62872144 | MS.gene28860:intron |
| TTCGTGATGACGATAGTATT+GGG | 0.474125 | 3.1:-62873317 | MS.gene28860:CDS |
| ATTCGTGATGACGATAGTAT+TGG | 0.493972 | 3.1:-62873318 | MS.gene28860:CDS |
| GAGAGATTCTTGTTCTTCGA+TGG | 0.494047 | 3.1:+62873680 | None:intergenic |
| GATTCTTGTTCTTCGATGGA+AGG | 0.498283 | 3.1:+62873684 | None:intergenic |
| ACGTTTCCGACGAGTGTTCG+TGG | 0.500909 | 3.1:-62873423 | MS.gene28860:CDS |
| ACTAAATCGCCGATCCAAAA+CGG | 0.504003 | 3.1:-62873555 | MS.gene28860:CDS |
| TAGTATTGGGAAGGAGAAGG+AGG | 0.505858 | 3.1:-62873304 | MS.gene28860:CDS |
| TCCTGTAGCATATTTCTTGG+AGG | 0.510865 | 3.1:-62872252 | MS.gene28860:CDS |
| AAAACGACGCGGAAAGGGAA+AGG | 0.511749 | 3.1:-62873242 | MS.gene28860:CDS |
| AAACCATTGAATCTGTGGAT+TGG | 0.516934 | 3.1:-62873200 | MS.gene28860:CDS |
| AGTGTTCGTGGTAGTGTGGA+AGG | 0.517506 | 3.1:-62873411 | MS.gene28860:CDS |
| GATCGGATTTGGAACGGTGA+AGG | 0.521080 | 3.1:+62873658 | None:intergenic |
| TCCTCCAAGAAATATGCTAC+AGG | 0.521950 | 3.1:+62872251 | None:intergenic |
| GGTTTAATTTCGGTGAATTG+AGG | 0.525062 | 3.1:-62873389 | MS.gene28860:CDS |
| TGGATCAACGGAATTGGCGA+GGG | 0.530632 | 3.1:+62873587 | None:intergenic |
| CGATAGTATTGGGAAGGAGA+AGG | 0.538629 | 3.1:-62873307 | MS.gene28860:CDS |
| GACGAGTGTTCGTGGTAGTG+TGG | 0.541992 | 3.1:-62873415 | MS.gene28860:CDS |
| AGTTTCCCGGTGTGGATCAA+CGG | 0.542243 | 3.1:+62873575 | None:intergenic |
| CACAACGCTTCCACCTGTAC+CGG | 0.543795 | 3.1:+62873479 | None:intergenic |
| GCGATGAGATACTCCGGTAC+AGG | 0.548526 | 3.1:-62873492 | MS.gene28860:CDS |
| GGCGATTTAGTTTCCCGGTG+TGG | 0.549778 | 3.1:+62873567 | None:intergenic |
| ATTTCGGTGAATTGAGGCAG+AGG | 0.561643 | 3.1:-62873383 | MS.gene28860:CDS |
| TAACACAAAACTCTCCTTCG+AGG | 0.562269 | 3.1:-62873721 | MS.gene28860:CDS |
| GTTAGCTGTTATGCACTAAG+TGG | 0.567718 | 3.1:+62871947 | None:intergenic |
| GTGGATCAACGGAATTGGCG+AGG | 0.570494 | 3.1:+62873586 | None:intergenic |
| AGCGGAAACCATTGAATCTG+TGG | 0.572429 | 3.1:-62873205 | MS.gene28860:CDS |
| ATACTATCTTCCGCTTGCCA+TGG | 0.573260 | 3.1:-62872157 | MS.gene28860:CDS |
| GTGTTCGTGGTAGTGTGGAA+GGG | 0.577205 | 3.1:-62873410 | MS.gene28860:CDS |
| CAATTCCGTTGATCCACACC+GGG | 0.582170 | 3.1:-62873580 | MS.gene28860:CDS |
| ATGAGATACTCCGGTACAGG+TGG | 0.592321 | 3.1:-62873489 | MS.gene28860:CDS |
| ACACTACCACGAACACTCGT+CGG | 0.594091 | 3.1:+62873417 | None:intergenic |
| TTATTGTGGAGGAAAAGTAC+AGG | 0.599448 | 3.1:+62872025 | None:intergenic |
| GCTGTTATGCACTAAGTGGA+CGG | 0.603546 | 3.1:+62871951 | None:intergenic |
| TGTACCAATTCGCATCTCCA+TGG | 0.606951 | 3.1:+62872140 | None:intergenic |
| AGGTGGAAGCGTTGTGTGTG+AGG | 0.607721 | 3.1:-62873472 | MS.gene28860:CDS |
| TGATGACGATAGTATTGGGA+AGG | 0.614925 | 3.1:-62873313 | MS.gene28860:CDS |
| TTCTTGGAGGAAATGTACAA+TGG | 0.615099 | 3.1:-62872239 | MS.gene28860:CDS |
| GATCGGGATCGGATTTGGAA+CGG | 0.615474 | 3.1:+62873652 | None:intergenic |
| TGTCAATGGTGGAAGTTCTG+AGG | 0.623868 | 3.1:-62873358 | MS.gene28860:CDS |
| TGTCAAGCAAATGAGTCCGA+TGG | 0.625222 | 3.1:-62873277 | MS.gene28860:CDS |
| CAAAACGGAATAGTATGTAA+CGG | 0.625662 | 3.1:-62873540 | MS.gene28860:CDS |
| CCAATTCCGTTGATCCACAC+CGG | 0.626836 | 3.1:-62873581 | MS.gene28860:CDS |
| ATTCAGAATCAGATGTTTAG+GGG | 0.628309 | 3.1:-62871993 | MS.gene28860:CDS |
| AGTGCGGCGGAGAACCTCGA+AGG | 0.628359 | 3.1:+62873707 | None:intergenic |
| ATTCGCATCTCCATGGCAAG+CGG | 0.642539 | 3.1:+62872147 | None:intergenic |
| AGGCAGAGGAATGTCAATGG+TGG | 0.646831 | 3.1:-62873369 | MS.gene28860:CDS |
| GTTACCGGTTCTCAACGCCA+TGG | 0.647526 | 3.1:+62873740 | None:intergenic |
| GTTCTTCGATGGAAGGAGTG+CGG | 0.649697 | 3.1:+62873691 | None:intergenic |
| AAGGAGTGTTCTTACGAAAG+CGG | 0.658478 | 3.1:-62873223 | MS.gene28860:CDS |
| TTGAGGCAGAGGAATGTCAA+TGG | 0.658798 | 3.1:-62873372 | MS.gene28860:CDS |
| CTTGATGCGATGAGATACTC+CGG | 0.658840 | 3.1:-62873498 | MS.gene28860:CDS |
| GGAATAGTATGTAACGGTAA+CGG | 0.664566 | 3.1:-62873534 | MS.gene28860:CDS |
| GGATCAACGGAATTGGCGAG+GGG | 0.687856 | 3.1:+62873588 | None:intergenic |
| CTTCGATGGAAGGAGTGCGG+CGG | 0.693126 | 3.1:+62873694 | None:intergenic |
| GGAAACGTAGAACAGACACT+CGG | 0.762491 | 3.1:+62873438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAAAATGATTTC+AGG | - | chr3.1:62873600-62873619 | MS.gene28860:CDS | 10.0% |
| !!! | ATTTCTTTTTCTCAAATAAA+AGG | - | chr3.1:62873575-62873594 | MS.gene28860:CDS | 15.0% |
| !!! | TGAATTTATTTTGATTATTG+TGG | + | chr3.1:62873685-62873704 | None:intergenic | 15.0% |
| !! | GTAAATCAATACTAGTAAAA+TGG | - | chr3.1:62873273-62873292 | MS.gene28860:CDS | 20.0% |
| !! | TATTTGTGTTATATCATCTA+TGG | - | chr3.1:62873626-62873645 | MS.gene28860:CDS | 20.0% |
| !!! | ATTTATTTTGATTATTGTGG+AGG | + | chr3.1:62873682-62873701 | None:intergenic | 20.0% |
| ! | AAATTCAGAATCAGATGTTT+AGG | - | chr3.1:62873698-62873717 | MS.gene28860:CDS | 25.0% |
| ! | AATTCAGAATCAGATGTTTA+GGG | - | chr3.1:62873699-62873718 | MS.gene28860:CDS | 25.0% |
| ! | CAGTTTGATCACATATTTAT+AGG | + | chr3.1:62872790-62872809 | None:intergenic | 25.0% |
| ! | TGGAAAATAATTAGCATACA+CGG | + | chr3.1:62872904-62872923 | None:intergenic | 25.0% |
| !! | CATATTTTCTTAGATTGCAT+AGG | - | chr3.1:62873052-62873071 | MS.gene28860:intron | 25.0% |
| !! | TAATTTTGTCATACCATAGT+TGG | + | chr3.1:62873087-62873106 | None:intergenic | 25.0% |
| !! | TCAAACTGTTATTTGCAATT+TGG | - | chr3.1:62872802-62872821 | MS.gene28860:intron | 25.0% |
| !!! | TTAAACAAGTATTGAACCAT+TGG | + | chr3.1:62872939-62872958 | None:intergenic | 25.0% |
| !!! | TTTTGGCTTAATTACATTTG+TGG | - | chr3.1:62873380-62873399 | MS.gene28860:CDS | 25.0% |
| ACAGGAAACTAAAAGATAAG+AGG | + | chr3.1:62873653-62873672 | None:intergenic | 30.0% | |
| AGAATTGAGTACTCACAATT+AGG | + | chr3.1:62872540-62872559 | None:intergenic | 30.0% | |
| ATTCAGAATCAGATGTTTAG+GGG | - | chr3.1:62873700-62873719 | MS.gene28860:CDS | 30.0% | |
| CAAAACGGAATAGTATGTAA+CGG | - | chr3.1:62872153-62872172 | MS.gene28860:CDS | 30.0% | |
| CACCAATCACATTAGATATA+GGG | + | chr3.1:62873161-62873180 | None:intergenic | 30.0% | |
| GGTATGACAAAATTACACAA+AGG | - | chr3.1:62873092-62873111 | MS.gene28860:intron | 30.0% | |
| ! | AACTGTTATTTGCAATTTGG+AGG | - | chr3.1:62872805-62872824 | MS.gene28860:intron | 30.0% |
| ! | TCAAATTTTTACCAGTGTCT+AGG | + | chr3.1:62872632-62872651 | None:intergenic | 30.0% |
| !!! | TGCAAGTTTGGTTTTACTTT+TGG | - | chr3.1:62872984-62873003 | MS.gene28860:intron | 30.0% |
| AAACCATTGAATCTGTGGAT+TGG | - | chr3.1:62872493-62872512 | MS.gene28860:intron | 35.0% | |
| ATGAAATTGGCAGTTATGAC+AGG | - | chr3.1:62873189-62873208 | MS.gene28860:CDS | 35.0% | |
| CCACCAATCACATTAGATAT+AGG | + | chr3.1:62873162-62873181 | None:intergenic | 35.0% | |
| CCTATATCTAATGTGATTGG+TGG | - | chr3.1:62873159-62873178 | MS.gene28860:intron | 35.0% | |
| GGAATAGTATGTAACGGTAA+CGG | - | chr3.1:62872159-62872178 | MS.gene28860:CDS | 35.0% | |
| GTCCCTATATCTAATGTGAT+TGG | - | chr3.1:62873156-62873175 | MS.gene28860:intron | 35.0% | |
| GTCTCTGTGATTTCTTTATG+CGG | - | chr3.1:62873295-62873314 | MS.gene28860:CDS | 35.0% | |
| TCACATTAGATATAGGGACA+TGG | + | chr3.1:62873155-62873174 | None:intergenic | 35.0% | |
| TGAAATTGGCAGTTATGACA+GGG | - | chr3.1:62873190-62873209 | MS.gene28860:CDS | 35.0% | |
| TGGTGGTATGACAATGAAAT+TGG | - | chr3.1:62873176-62873195 | MS.gene28860:CDS | 35.0% | |
| TGTGATGAATTATGAAGCAC+TGG | - | chr3.1:62872601-62872620 | MS.gene28860:intron | 35.0% | |
| TGTGTCTGACATTGATATGT+CGG | - | chr3.1:62872689-62872708 | MS.gene28860:intron | 35.0% | |
| TTAACTTCAGAAACAGCCAA+TGG | - | chr3.1:62872865-62872884 | MS.gene28860:intron | 35.0% | |
| TTCTTGGAGGAAATGTACAA+TGG | - | chr3.1:62873454-62873473 | MS.gene28860:CDS | 35.0% | |
| TTGATTCATAAATGAGCTGC+TGG | + | chr3.1:62873248-62873267 | None:intergenic | 35.0% | |
| TTTCTTAGATTGCATAGGCT+TGG | - | chr3.1:62873057-62873076 | MS.gene28860:intron | 35.0% | |
| ! | ACACCTTCTATCAGAAGTAT+CGG | - | chr3.1:62872721-62872740 | MS.gene28860:intron | 35.0% |
| ! | AGTGTGGAAGGGTTTAATTT+CGG | - | chr3.1:62872294-62872313 | MS.gene28860:intron | 35.0% |
| ! | ATTCGTGATGACGATAGTAT+TGG | - | chr3.1:62872375-62872394 | MS.gene28860:intron | 35.0% |
| ! | CGGAAAAGTTTTTGAACCAT+TGG | + | chr3.1:62872884-62872903 | None:intergenic | 35.0% |
| ! | CGTTACATACTATTCCGTTT+TGG | + | chr3.1:62872155-62872174 | None:intergenic | 35.0% |
| ! | GGTTTAATTTCGGTGAATTG+AGG | - | chr3.1:62872304-62872323 | MS.gene28860:intron | 35.0% |
| ! | TTATTGTGGAGGAAAAGTAC+AGG | + | chr3.1:62873671-62873690 | None:intergenic | 35.0% |
| ! | TTCGTGATGACGATAGTATT+GGG | - | chr3.1:62872376-62872395 | MS.gene28860:intron | 35.0% |
| ! | TTCTGAGGATTTAGTTGCTT+CGG | - | chr3.1:62872350-62872369 | MS.gene28860:intron | 35.0% |
| !! | ATGTTTACGCTTTTTGCGAT+CGG | + | chr3.1:62872061-62872080 | None:intergenic | 35.0% |
| !! | CATACTATTCCGTTTTGGAT+CGG | + | chr3.1:62872150-62872169 | None:intergenic | 35.0% |
| !! | CTCATGTTGTTTGTGCTTTT+TGG | - | chr3.1:62873363-62873382 | MS.gene28860:CDS | 35.0% |
| !! | TTTTTGATCGGTTTCTCCAT+CGG | + | chr3.1:62872435-62872454 | None:intergenic | 35.0% |
| ACTAAATCGCCGATCCAAAA+CGG | - | chr3.1:62872138-62872157 | MS.gene28860:intron | 40.0% | |
| CAACCGATACTTCTGATAGA+AGG | + | chr3.1:62872727-62872746 | None:intergenic | 40.0% | |
| CTTCCAATCCACAGATTCAA+TGG | + | chr3.1:62872499-62872518 | None:intergenic | 40.0% | |
| GAGAGATTCTTGTTCTTCGA+TGG | + | chr3.1:62872016-62872035 | None:intergenic | 40.0% | |
| GATTCTTGTTCTTCGATGGA+AGG | + | chr3.1:62872012-62872031 | None:intergenic | 40.0% | |
| GTCTCCTGTAGCATATTTCT+TGG | - | chr3.1:62873438-62873457 | MS.gene28860:CDS | 40.0% | |
| TAACACAAAACTCTCCTTCG+AGG | - | chr3.1:62871972-62871991 | MS.gene28860:CDS | 40.0% | |
| TCCTCCAAGAAATATGCTAC+AGG | + | chr3.1:62873445-62873464 | None:intergenic | 40.0% | |
| TCCTGTAGCATATTTCTTGG+AGG | - | chr3.1:62873441-62873460 | MS.gene28860:CDS | 40.0% | |
| TCTGTTGTAGTGTGCAAGTT+TGG | - | chr3.1:62872972-62872991 | MS.gene28860:intron | 40.0% | |
| TGTCCACGAAAACGAAAGTT+TGG | - | chr3.1:62873123-62873142 | MS.gene28860:intron | 40.0% | |
| TTACGAAGCACAACTACTCT+TGG | - | chr3.1:62873484-62873503 | MS.gene28860:CDS | 40.0% | |
| ! | CAACCAAACTTTCGTTTTCG+TGG | + | chr3.1:62873129-62873148 | None:intergenic | 40.0% |
| ! | GTATGTAACGGTAACGGTTT+CGG | - | chr3.1:62872165-62872184 | MS.gene28860:CDS | 40.0% |
| ! | TAGGCTTGGTAATCCAACTA+TGG | - | chr3.1:62873071-62873090 | MS.gene28860:intron | 40.0% |
| ! | TATCGGTTGCTACAGAAGTA+AGG | - | chr3.1:62872738-62872757 | MS.gene28860:intron | 40.0% |
| ! | TCGTTTTCGTGGACATTATG+AGG | + | chr3.1:62873118-62873137 | None:intergenic | 40.0% |
| ! | TGATGACGATAGTATTGGGA+AGG | - | chr3.1:62872380-62872399 | MS.gene28860:intron | 40.0% |
| !! | AAGGAGTGTTCTTACGAAAG+CGG | - | chr3.1:62872470-62872489 | MS.gene28860:intron | 40.0% |
| !! | GAAGGAGAGTTTTGTGTTAC+CGG | + | chr3.1:62871971-62871990 | None:intergenic | 40.0% |
| !! | TGTGGATTGGAAGCGAATTA+TGG | - | chr3.1:62872506-62872525 | MS.gene28860:intron | 40.0% |
| !! | TGTTTACGCTTTTTGCGATC+GGG | + | chr3.1:62872060-62872079 | None:intergenic | 40.0% |
| AGCGGAAACCATTGAATCTG+TGG | - | chr3.1:62872488-62872507 | MS.gene28860:intron | 45.0% | |
| ATACTATCTTCCGCTTGCCA+TGG | - | chr3.1:62873536-62873555 | MS.gene28860:CDS | 45.0% | |
| ATTTCGGTGAATTGAGGCAG+AGG | - | chr3.1:62872310-62872329 | MS.gene28860:intron | 45.0% | |
| CTTGATGCGATGAGATACTC+CGG | - | chr3.1:62872195-62872214 | MS.gene28860:CDS | 45.0% | |
| GAAACCGATCAAAAACGACG+CGG | - | chr3.1:62872440-62872459 | MS.gene28860:intron | 45.0% | |
| GACATTGATATGTCGGACAG+TGG | - | chr3.1:62872696-62872715 | MS.gene28860:intron | 45.0% | |
| GATCAAAAACGACGCGGAAA+GGG | - | chr3.1:62872446-62872465 | MS.gene28860:intron | 45.0% | |
| GATGCATGCAAAGCAGAGTA+AGG | + | chr3.1:62872563-62872582 | None:intergenic | 45.0% | |
| GGAAACGTAGAACAGACACT+CGG | + | chr3.1:62872258-62872277 | None:intergenic | 45.0% | |
| TCCAAATACCATGCAGCCAA+TGG | - | chr3.1:62872920-62872939 | MS.gene28860:intron | 45.0% | |
| TGTACCAATTCGCATCTCCA+TGG | + | chr3.1:62873556-62873575 | None:intergenic | 45.0% | |
| TGTCAAGCAAATGAGTCCGA+TGG | - | chr3.1:62872416-62872435 | MS.gene28860:intron | 45.0% | |
| TTGAGGCAGAGGAATGTCAA+TGG | - | chr3.1:62872321-62872340 | MS.gene28860:intron | 45.0% | |
| ! | ACCATTGGCTGCATGGTATT+TGG | + | chr3.1:62872924-62872943 | None:intergenic | 45.0% |
| ! | CGATAGTATTGGGAAGGAGA+AGG | - | chr3.1:62872386-62872405 | MS.gene28860:intron | 45.0% |
| ! | GTATTGAACCATTGGCTGCA+TGG | + | chr3.1:62872931-62872950 | None:intergenic | 45.0% |
| ! | TAGTATTGGGAAGGAGAAGG+AGG | - | chr3.1:62872389-62872408 | MS.gene28860:intron | 45.0% |
| ! | TGTCAATGGTGGAAGTTCTG+AGG | - | chr3.1:62872335-62872354 | MS.gene28860:intron | 45.0% |
| !!! | CTTTCCGCGTCGTTTTTGAT+CGG | + | chr3.1:62872447-62872466 | None:intergenic | 45.0% |
| AAAACGACGCGGAAAGGGAA+AGG | - | chr3.1:62872451-62872470 | MS.gene28860:intron | 50.0% | |
| ACACTACCACGAACACTCGT+CGG | + | chr3.1:62872279-62872298 | None:intergenic | 50.0% | |
| AGGCAGAGGAATGTCAATGG+TGG | - | chr3.1:62872324-62872343 | MS.gene28860:intron | 50.0% | |
| AGTTTCCCGGTGTGGATCAA+CGG | + | chr3.1:62872121-62872140 | None:intergenic | 50.0% | |
| ATGAGATACTCCGGTACAGG+TGG | - | chr3.1:62872204-62872223 | MS.gene28860:CDS | 50.0% | |
| ATTCGCATCTCCATGGCAAG+CGG | + | chr3.1:62873549-62873568 | None:intergenic | 50.0% | |
| CAATTCCGTTGATCCACACC+GGG | - | chr3.1:62872113-62872132 | MS.gene28860:intron | 50.0% | |
| CCAATTCCGTTGATCCACAC+CGG | - | chr3.1:62872112-62872131 | MS.gene28860:intron | 50.0% | |
| CGATCAAAAACGACGCGGAA+AGG | - | chr3.1:62872445-62872464 | MS.gene28860:intron | 50.0% | |
| CTTGCCATGGAGATGCGAAT+TGG | - | chr3.1:62873549-62873568 | MS.gene28860:CDS | 50.0% | |
| GATCGGGATCGGATTTGGAA+CGG | + | chr3.1:62872044-62872063 | None:intergenic | 50.0% | |
| GTTCTTCGATGGAAGGAGTG+CGG | + | chr3.1:62872005-62872024 | None:intergenic | 50.0% | |
| TGGATCAACGGAATTGGCGA+GGG | + | chr3.1:62872109-62872128 | None:intergenic | 50.0% | |
| TTTGCGATCGGGATCGGATT+TGG | + | chr3.1:62872049-62872068 | None:intergenic | 50.0% | |
| ! | AGTGTTCGTGGTAGTGTGGA+AGG | - | chr3.1:62872282-62872301 | MS.gene28860:intron | 50.0% |
| ! | GATCGGATTTGGAACGGTGA+AGG | + | chr3.1:62872038-62872057 | None:intergenic | 50.0% |
| ! | GGATCGGCGATTTAGTTTCC+CGG | + | chr3.1:62872134-62872153 | None:intergenic | 50.0% |
| ! | GTGTTCGTGGTAGTGTGGAA+GGG | - | chr3.1:62872283-62872302 | MS.gene28860:intron | 50.0% |
| !! | ACGCTTTTTGCGATCGGGAT+CGG | + | chr3.1:62872055-62872074 | None:intergenic | 50.0% |
| ACGTTTCCGACGAGTGTTCG+TGG | - | chr3.1:62872270-62872289 | MS.gene28860:CDS | 55.0% | |
| CACAACGCTTCCACCTGTAC+CGG | + | chr3.1:62872217-62872236 | None:intergenic | 55.0% | |
| CCGGTGTGGATCAACGGAAT+TGG | + | chr3.1:62872115-62872134 | None:intergenic | 55.0% | |
| GCGATGAGATACTCCGGTAC+AGG | - | chr3.1:62872201-62872220 | MS.gene28860:CDS | 55.0% | |
| GGATCAACGGAATTGGCGAG+GGG | + | chr3.1:62872108-62872127 | None:intergenic | 55.0% | |
| GTGGATCAACGGAATTGGCG+AGG | + | chr3.1:62872110-62872129 | None:intergenic | 55.0% | |
| ! | GACGAGTGTTCGTGGTAGTG+TGG | - | chr3.1:62872278-62872297 | MS.gene28860:intron | 55.0% |
| ! | GGCGATTTAGTTTCCCGGTG+TGG | + | chr3.1:62872129-62872148 | None:intergenic | 55.0% |
| !! | AGGTGGAAGCGTTGTGTGTG+AGG | - | chr3.1:62872221-62872240 | MS.gene28860:CDS | 55.0% |
| CACTGGCGACACCTAGACAC+TGG | - | chr3.1:62872618-62872637 | MS.gene28860:intron | 60.0% | |
| ! | CTTCGATGGAAGGAGTGCGG+CGG | + | chr3.1:62872002-62872021 | None:intergenic | 60.0% |
| AGTGCGGCGGAGAACCTCGA+AGG | + | chr3.1:62871989-62872008 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62871955 | 62873760 | 62871955 | ID=MS.gene28860 |
| chr3.1 | mRNA | 62871955 | 62873760 | 62871955 | ID=MS.gene28860.t1;Parent=MS.gene28860 |
| chr3.1 | exon | 62873172 | 62873760 | 62873172 | ID=MS.gene28860.t1.exon1;Parent=MS.gene28860.t1 |
| chr3.1 | CDS | 62873172 | 62873760 | 62873172 | ID=cds.MS.gene28860.t1;Parent=MS.gene28860.t1 |
| chr3.1 | exon | 62872145 | 62872296 | 62872145 | ID=MS.gene28860.t1.exon2;Parent=MS.gene28860.t1 |
| chr3.1 | CDS | 62872145 | 62872296 | 62872145 | ID=cds.MS.gene28860.t1;Parent=MS.gene28860.t1 |
| chr3.1 | exon | 62871955 | 62872050 | 62871955 | ID=MS.gene28860.t1.exon3;Parent=MS.gene28860.t1 |
| chr3.1 | CDS | 62871955 | 62872050 | 62871955 | ID=cds.MS.gene28860.t1;Parent=MS.gene28860.t1 |
| Gene Sequence |
| Protein sequence |
