Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28942.t1 | AEE89672.1 | 99.1 | 558 | 5 | 0 | 1 | 558 | 1 | 558 | 0.00E+00 | 1110.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28942.t1 | Q93ZY2 | 70.3 | 566 | 142 | 12 | 1 | 558 | 1 | 548 | 1.6e-209 | 730.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28942.t1 | F6LPV0 | 99.1 | 558 | 5 | 0 | 1 | 558 | 1 | 558 | 0.0e+00 | 1110.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050432 | MS.gene28942 | 0.822026 | 2.95E-53 | -1.69E-46 |
| MS.gene050767 | MS.gene28942 | 0.826122 | 3.23E-54 | -1.69E-46 |
| MS.gene050770 | MS.gene28942 | 0.825573 | 4.36E-54 | -1.69E-46 |
| MS.gene051255 | MS.gene28942 | 0.800621 | 1.32E-48 | -1.69E-46 |
| MS.gene052287 | MS.gene28942 | 0.917173 | 7.33E-86 | -1.69E-46 |
| MS.gene054376 | MS.gene28942 | 0.82377 | 1.16E-53 | -1.69E-46 |
| MS.gene054802 | MS.gene28942 | 0.808053 | 3.74E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene28942 | 0.80941 | 1.92E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene28942 | 0.809857 | 1.54E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene28942 | 0.80994 | 1.48E-50 | -1.69E-46 |
| MS.gene055390 | MS.gene28942 | 0.801203 | 1.01E-48 | -1.69E-46 |
| MS.gene056931 | MS.gene28942 | 0.822953 | 1.80E-53 | -1.69E-46 |
| MS.gene056933 | MS.gene28942 | 0.820532 | 6.52E-53 | -1.69E-46 |
| MS.gene056935 | MS.gene28942 | 0.819687 | 1.02E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene28942 | 0.805585 | 1.24E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene28942 | 0.825128 | 5.55E-54 | -1.69E-46 |
| MS.gene060356 | MS.gene28942 | 0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene060559 | MS.gene28942 | 0.805526 | 1.28E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28942.t1 | MTR_4g075640 | 98.925 | 558 | 6 | 0 | 1 | 558 | 1 | 558 | 0.0 | 1144 |
| MS.gene28942.t1 | MTR_7g065220 | 60.890 | 427 | 156 | 6 | 85 | 506 | 182 | 602 | 4.96e-176 | 512 |
| MS.gene28942.t1 | MTR_3g069590 | 57.991 | 438 | 169 | 5 | 82 | 513 | 95 | 523 | 4.40e-175 | 508 |
| MS.gene28942.t1 | MTR_5g081410 | 57.895 | 418 | 165 | 4 | 89 | 503 | 84 | 493 | 1.67e-167 | 488 |
| MS.gene28942.t1 | MTR_4g019770 | 62.264 | 371 | 134 | 2 | 85 | 453 | 94 | 460 | 1.03e-159 | 466 |
| MS.gene28942.t1 | MTR_3g069590 | 62.130 | 338 | 124 | 2 | 82 | 416 | 95 | 431 | 2.44e-149 | 436 |
| MS.gene28942.t1 | MTR_8g030850 | 54.145 | 386 | 156 | 6 | 82 | 452 | 90 | 469 | 8.08e-138 | 408 |
| MS.gene28942.t1 | MTR_2g101830 | 50.754 | 398 | 178 | 6 | 68 | 464 | 68 | 448 | 3.42e-133 | 398 |
| MS.gene28942.t1 | MTR_6g087700 | 50.886 | 395 | 174 | 6 | 86 | 479 | 95 | 470 | 6.59e-132 | 395 |
| MS.gene28942.t1 | MTR_7g077690 | 49.176 | 425 | 154 | 5 | 83 | 451 | 109 | 527 | 8.37e-127 | 382 |
| MS.gene28942.t1 | MTR_5g025960 | 47.107 | 363 | 184 | 3 | 86 | 448 | 117 | 471 | 2.41e-111 | 343 |
| MS.gene28942.t1 | MTR_4g013165 | 51.757 | 313 | 132 | 5 | 138 | 449 | 1 | 295 | 2.82e-108 | 330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28942.t1 | AT4G38430 | 70.123 | 569 | 138 | 13 | 1 | 558 | 1 | 548 | 0.0 | 742 |
| MS.gene28942.t1 | AT5G05940 | 57.143 | 448 | 179 | 6 | 81 | 518 | 96 | 540 | 4.76e-178 | 516 |
| MS.gene28942.t1 | AT5G02010 | 60.621 | 419 | 152 | 6 | 80 | 496 | 63 | 470 | 1.63e-177 | 512 |
| MS.gene28942.t1 | AT5G05940 | 61.290 | 341 | 126 | 2 | 81 | 416 | 96 | 435 | 2.58e-150 | 441 |
| MS.gene28942.t1 | AT3G55660 | 52.740 | 438 | 180 | 8 | 84 | 502 | 104 | 533 | 3.83e-148 | 438 |
| MS.gene28942.t1 | AT4G00460 | 55.764 | 373 | 152 | 6 | 87 | 452 | 104 | 470 | 4.27e-140 | 414 |
| MS.gene28942.t1 | AT4G00460 | 55.764 | 373 | 152 | 6 | 87 | 452 | 104 | 470 | 4.27e-140 | 414 |
| MS.gene28942.t1 | AT1G01700 | 54.301 | 372 | 159 | 5 | 87 | 452 | 116 | 482 | 2.39e-132 | 395 |
| MS.gene28942.t1 | AT4G13240 | 51.832 | 382 | 165 | 6 | 80 | 459 | 67 | 431 | 2.16e-130 | 391 |
| MS.gene28942.t1 | AT1G52240 | 55.096 | 363 | 140 | 6 | 88 | 448 | 105 | 446 | 6.48e-129 | 388 |
| MS.gene28942.t1 | AT3G24620 | 53.168 | 363 | 152 | 5 | 87 | 448 | 85 | 430 | 9.63e-129 | 387 |
| MS.gene28942.t1 | AT1G79860 | 52.329 | 365 | 155 | 7 | 85 | 448 | 90 | 436 | 1.65e-128 | 386 |
| MS.gene28942.t1 | AT3G55660 | 55.425 | 341 | 137 | 5 | 84 | 416 | 104 | 437 | 1.75e-128 | 383 |
| MS.gene28942.t1 | AT1G01700 | 50.249 | 402 | 159 | 6 | 87 | 452 | 116 | 512 | 6.98e-126 | 379 |
| MS.gene28942.t1 | AT5G19560 | 51.220 | 369 | 164 | 7 | 86 | 453 | 43 | 396 | 1.47e-120 | 365 |
| MS.gene28942.t1 | AT5G19560 | 51.220 | 369 | 164 | 7 | 86 | 453 | 43 | 396 | 1.47e-120 | 365 |
| MS.gene28942.t1 | AT2G45890 | 48.404 | 376 | 175 | 7 | 87 | 452 | 93 | 459 | 3.75e-120 | 362 |
| MS.gene28942.t1 | AT5G19560 | 51.220 | 369 | 164 | 7 | 86 | 453 | 62 | 415 | 5.21e-120 | 364 |
| MS.gene28942.t1 | AT4G00460 | 52.083 | 336 | 148 | 6 | 124 | 452 | 8 | 337 | 9.10e-116 | 347 |
| MS.gene28942.t1 | AT3G16130 | 49.176 | 364 | 169 | 5 | 86 | 448 | 89 | 437 | 4.70e-115 | 352 |
| MS.gene28942.t1 | AT1G01700 | 50.286 | 350 | 156 | 6 | 87 | 423 | 116 | 460 | 5.29e-109 | 334 |
| MS.gene28942.t1 | AT5G19560 | 49.398 | 332 | 152 | 7 | 86 | 416 | 62 | 378 | 2.85e-102 | 313 |
| MS.gene28942.t1 | AT1G31650 | 41.644 | 365 | 200 | 5 | 87 | 448 | 108 | 462 | 2.60e-96 | 304 |
| MS.gene28942.t1 | AT1G31650 | 41.644 | 365 | 200 | 5 | 87 | 448 | 136 | 490 | 1.29e-95 | 303 |
| MS.gene28942.t1 | AT4G00460 | 58.333 | 216 | 87 | 2 | 87 | 299 | 104 | 319 | 3.63e-82 | 260 |
| MS.gene28942.t1 | AT5G19560 | 49.097 | 277 | 125 | 7 | 178 | 453 | 5 | 266 | 1.50e-80 | 257 |
| MS.gene28942.t1 | AT1G01700 | 56.944 | 216 | 90 | 2 | 87 | 299 | 116 | 331 | 1.15e-78 | 252 |
| MS.gene28942.t1 | AT1G01700 | 56.944 | 216 | 90 | 2 | 87 | 299 | 116 | 331 | 1.15e-78 | 252 |
Find 158 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTGGCCATTATGTTAA+AGG | 0.205615 | 4.4:-34613313 | None:intergenic |
| TCTAGAACTCAGTCTCTTTC+TGG | 0.210377 | 4.4:-34613675 | None:intergenic |
| GATTGTGTTGGGTGATTCTA+AGG | 0.220759 | 4.4:+34611863 | MS.gene28942:CDS |
| CCATGGCAGCCTTAAGTATC+TGG | 0.261590 | 4.4:-34612016 | None:intergenic |
| CGACTGTGTTTGGTGAATTA+TGG | 0.265683 | 4.4:+34611583 | MS.gene28942:CDS |
| CGAAGCCAACTTTCCGGCCT+TGG | 0.278677 | 4.4:-34613586 | None:intergenic |
| AGCTTGAAACGCCGATTTCC+TGG | 0.282493 | 4.4:+34612724 | MS.gene28942:CDS |
| ATCAGTCGAAGCCAACTTTC+CGG | 0.286787 | 4.4:-34613592 | None:intergenic |
| TTGTTCAGCAGGGGAGGTTT+TGG | 0.291008 | 4.4:+34613393 | MS.gene28942:CDS |
| TAGTTCTGTTCTTGCTGAAA+TGG | 0.305090 | 4.4:+34612046 | MS.gene28942:CDS |
| GGGGAAAGCCAGACGGTCTT+GGG | 0.310784 | 4.4:+34612624 | MS.gene28942:CDS |
| CCTTCTGTGCAACAATTTCC+AGG | 0.323902 | 4.4:+34611699 | MS.gene28942:CDS |
| AACCCATTTGGTGGAAGCTT+TGG | 0.329873 | 4.4:-34611945 | None:intergenic |
| CGGGGAAAGCCAGACGGTCT+TGG | 0.332922 | 4.4:+34612623 | MS.gene28942:CDS |
| GAGCTTAGCCTTTAACATAA+TGG | 0.342778 | 4.4:+34613305 | MS.gene28942:CDS |
| CGCCGCTCATTTCAACTTGC+CGG | 0.344030 | 4.4:+34610972 | MS.gene28942:CDS |
| TCTAAGGATTGTGATGATTA+TGG | 0.346046 | 4.4:+34611879 | MS.gene28942:CDS |
| GATATGTCTGGTGGTGGAAA+AGG | 0.352459 | 4.4:+34611245 | MS.gene28942:CDS |
| TACCTTATTATACTGTATCT+TGG | 0.354569 | 4.4:-34612773 | None:intergenic |
| GGCCAAGATACAGTATAATA+AGG | 0.358263 | 4.4:+34612771 | MS.gene28942:CDS |
| TGGGAAAGATGTTGCTGTTT+GGG | 0.363508 | 4.4:+34611026 | MS.gene28942:CDS |
| AGCAATGTGGCGTAGGGAAA+TGG | 0.382299 | 4.4:+34611635 | MS.gene28942:CDS |
| TCTCCAAAGCTTCCACCAAA+TGG | 0.384270 | 4.4:+34611942 | MS.gene28942:CDS |
| ATATGTCTGGTGGTGGAAAA+GGG | 0.392050 | 4.4:+34611246 | MS.gene28942:CDS |
| CTCAGCGCAAGAAGAAATTC+TGG | 0.399210 | 4.4:+34613645 | MS.gene28942:CDS |
| TGTTCCTCCTCTCCTGTTAG+TGG | 0.400070 | 4.4:+34613504 | MS.gene28942:CDS |
| CTATTCTTGAAAGTTATTCC+AGG | 0.402654 | 4.4:+34613274 | MS.gene28942:CDS |
| TCCTCAAACAGCGCTAGATA+TGG | 0.409212 | 4.4:+34612750 | MS.gene28942:CDS |
| CTGCAAGGACTCCCACTAAC+AGG | 0.411730 | 4.4:-34613516 | None:intergenic |
| GTGGGAAAGATGTTGCTGTT+TGG | 0.414429 | 4.4:+34611025 | MS.gene28942:CDS |
| ATAAAGGACATCATCGATTC+TGG | 0.415180 | 4.4:-34613328 | None:intergenic |
| CTTTCCACCCCAAGACCGTC+TGG | 0.421418 | 4.4:-34612632 | None:intergenic |
| GACGGCGCAGGCTATGCTTC+CGG | 0.425048 | 4.4:+34610996 | MS.gene28942:CDS |
| CAGATTCTATCTTGTTCAGC+AGG | 0.433813 | 4.4:+34613382 | MS.gene28942:CDS |
| TTATAGTATCGTCTACATAA+AGG | 0.435898 | 4.4:-34613344 | None:intergenic |
| CCTGCATTGAAGAAGCTTGA+CGG | 0.436172 | 4.4:+34611780 | MS.gene28942:CDS |
| TTTGAGGAAGCCCAGGAAAT+CGG | 0.442800 | 4.4:-34612735 | None:intergenic |
| AGCTGAGCTGGAAGCTCCTT+CGG | 0.443051 | 4.4:-34610929 | None:intergenic |
| CTCCAAAGCTTCCACCAAAT+GGG | 0.444467 | 4.4:+34611943 | MS.gene28942:CDS |
| AGCATAGCCTGCGCCGTCGC+CGG | 0.445981 | 4.4:-34610991 | None:intergenic |
| TTGGGATCACAAACGTGACT+TGG | 0.452605 | 4.4:+34611044 | MS.gene28942:CDS |
| ATGGGTTGTGTGAGGATGAT+AGG | 0.453326 | 4.4:+34611961 | MS.gene28942:CDS |
| TCATCCTCACACAACCCATT+TGG | 0.456886 | 4.4:-34611957 | None:intergenic |
| TGCAGAAGTTGAAATGATGA+AGG | 0.459359 | 4.4:+34611193 | MS.gene28942:intron |
| AGAATGGTAAAGCTTGTCTT+GGG | 0.459633 | 4.4:+34612440 | MS.gene28942:intron |
| GTAGCAAAAGGAGAGGCATA+TGG | 0.460266 | 4.4:-34613471 | None:intergenic |
| GAACCACTTTCTTGTCCAAC+GGG | 0.461497 | 4.4:+34612684 | MS.gene28942:CDS |
| GTAATTGCAGCGACTGTGTT+TGG | 0.462379 | 4.4:+34611573 | MS.gene28942:intron |
| TGAATGTCTTCTTGACTGCC+TGG | 0.463418 | 4.4:+34612504 | MS.gene28942:CDS |
| CTGTTAGGCAAGAAGAGAAA+TGG | 0.465548 | 4.4:+34611910 | MS.gene28942:CDS |
| TCATTTCAACTTGCCGGCGA+CGG | 0.465724 | 4.4:+34610978 | MS.gene28942:CDS |
| CAACTTGCCGGCGACGGCGC+AGG | 0.470587 | 4.4:+34610984 | MS.gene28942:CDS |
| CAGAATGGTAAAGCTTGTCT+TGG | 0.471373 | 4.4:+34612439 | MS.gene28942:intron |
| CAGGCTATGCTTCCGGTCAT+CGG | 0.475533 | 4.4:+34611003 | MS.gene28942:CDS |
| GAAAGTTCTAGCAGCTTCTA+CGG | 0.475680 | 4.4:+34610892 | MS.gene28942:CDS |
| GTTGATAGAGGGATTGTGTT+GGG | 0.477945 | 4.4:+34611852 | MS.gene28942:CDS |
| ATTATGGTAGACCTTCTGTT+AGG | 0.480466 | 4.4:+34611895 | MS.gene28942:CDS |
| TGTTGAATTGAGAAGGGGCT+GGG | 0.481257 | 4.4:-34613444 | None:intergenic |
| CCGTCAAGCTTCTTCAATGC+AGG | 0.482835 | 4.4:-34611780 | None:intergenic |
| TGAAAGTTATTCCAGGGTGA+TGG | 0.483592 | 4.4:+34613281 | MS.gene28942:CDS |
| GTTCCTCCTCTCCTGTTAGT+GGG | 0.489622 | 4.4:+34613505 | MS.gene28942:CDS |
| GTGCAACAATTTCCAGGTGG+TGG | 0.490405 | 4.4:+34611705 | MS.gene28942:CDS |
| TGGCGAGAGATTAGCTGAGC+TGG | 0.492120 | 4.4:-34610941 | None:intergenic |
| GCCATATCTAGCGCTGTTTG+AGG | 0.492418 | 4.4:-34612751 | None:intergenic |
| AGATTCCAAGGCCGGAAAGT+TGG | 0.493306 | 4.4:+34613581 | MS.gene28942:CDS |
| GTTTGGTGAATTATGGAGGT+TGG | 0.496317 | 4.4:+34611590 | MS.gene28942:CDS |
| CCTGGAAATTGTTGCACAGA+AGG | 0.500430 | 4.4:-34611699 | None:intergenic |
| CAGAATTTCTTCTTGCGCTG+AGG | 0.503230 | 4.4:-34613644 | None:intergenic |
| TTGAGGCTGCTATACATGTA+TGG | 0.504433 | 4.4:+34612569 | MS.gene28942:CDS |
| TAGCAAAAGGAGAGGCATAT+GGG | 0.505390 | 4.4:-34613470 | None:intergenic |
| GTGTTGAATTGAGAAGGGGC+TGG | 0.507650 | 4.4:-34613445 | None:intergenic |
| GCTTGAAACGCCGATTTCCT+GGG | 0.512807 | 4.4:+34612725 | MS.gene28942:CDS |
| TTCTCTTCTTGCCTAACAGA+AGG | 0.513322 | 4.4:-34611906 | None:intergenic |
| CGGAATGCTGCTAAGTATGT+TGG | 0.515803 | 4.4:+34611800 | MS.gene28942:CDS |
| GGAGAGGATATGTCTGGTGG+TGG | 0.518827 | 4.4:+34611239 | MS.gene28942:CDS |
| CGACTGATTATGAGAAGGTA+TGG | 0.520176 | 4.4:+34613607 | MS.gene28942:CDS |
| CAGAACGAAGGAGTAGCAAA+AGG | 0.523441 | 4.4:-34613483 | None:intergenic |
| TTGTACAAACCAGATACTTA+AGG | 0.526700 | 4.4:+34612007 | MS.gene28942:CDS |
| TCCTCACACAACCCATTTGG+TGG | 0.531504 | 4.4:-34611954 | None:intergenic |
| AACGCCATCACGAATCTCTC+CGG | 0.532591 | 4.4:+34611293 | MS.gene28942:CDS |
| GCAGTAGTGTCTCTGCCCGT+TGG | 0.535109 | 4.4:-34612699 | None:intergenic |
| TATGTCTGGTGGTGGAAAAG+GGG | 0.535150 | 4.4:+34611247 | MS.gene28942:CDS |
| TGCTGCTAAGTATGTTGGAT+GGG | 0.536146 | 4.4:+34611805 | MS.gene28942:CDS |
| ACATCTTTCCCACCGATGAC+CGG | 0.539491 | 4.4:-34611015 | None:intergenic |
| AAACGTGACTTGGATTTGAC+CGG | 0.539763 | 4.4:+34611054 | MS.gene28942:CDS |
| ATATACCGGTACATAACTGC+TGG | 0.541260 | 4.4:+34612469 | MS.gene28942:CDS |
| GGGGTGTGTTGAATTGAGAA+GGG | 0.542741 | 4.4:-34613450 | None:intergenic |
| GAGTGCTGACATCAGCGAAT+CGG | 0.550570 | 4.4:+34610870 | MS.gene28942:CDS |
| AAGGGTAAAGATTCCAAGGC+CGG | 0.550775 | 4.4:+34613573 | MS.gene28942:CDS |
| TATTCTTGAAAGTTATTCCA+GGG | 0.551588 | 4.4:+34613275 | MS.gene28942:CDS |
| AAGGATTCAACATAAGCAGC+AGG | 0.553157 | 4.4:-34612074 | None:intergenic |
| ACTTCATAAGTTCCACCACC+TGG | 0.555405 | 4.4:-34611717 | None:intergenic |
| GCTATGCTTCCGGTCATCGG+TGG | 0.557617 | 4.4:+34611006 | MS.gene28942:CDS |
| AAATGAGCGGCGAGCTGACG+TGG | 0.558695 | 4.4:-34610961 | None:intergenic |
| CCAGATACTTAAGGCTGCCA+TGG | 0.558712 | 4.4:+34612016 | MS.gene28942:CDS |
| TCTATCTTGTTCAGCAGGGG+AGG | 0.559447 | 4.4:+34613387 | MS.gene28942:CDS |
| AAGCATTATTACCCTTGGCA+AGG | 0.564336 | 4.4:-34612093 | None:intergenic |
| TGGTGGAACTTATGAAGTAA+TGG | 0.566731 | 4.4:+34611722 | MS.gene28942:CDS |
| AGCGCTGTTTGAGGAAGCCC+AGG | 0.567802 | 4.4:-34612742 | None:intergenic |
| TGGGGTGTGTTGAATTGAGA+AGG | 0.569446 | 4.4:-34613451 | None:intergenic |
| CTCCTTCGGCGTCGAAACGT+CGG | 0.574174 | 4.4:-34610915 | None:intergenic |
| AACAGAACTATTAATCGCCA+TGG | 0.575102 | 4.4:-34612033 | None:intergenic |
| GTCTTGGGGATATAATATAC+CGG | 0.575804 | 4.4:+34612455 | MS.gene28942:CDS |
| AAAGCCAGACGGTCTTGGGG+TGG | 0.577009 | 4.4:+34612628 | MS.gene28942:CDS |
| AGAACCACTTTCTTGTCCAA+CGG | 0.580288 | 4.4:+34612683 | MS.gene28942:CDS |
| TGTGTCCTGCGTGGACTGCA+AGG | 0.582733 | 4.4:-34613531 | None:intergenic |
| TGTTGATAGAGGGATTGTGT+TGG | 0.583213 | 4.4:+34611851 | MS.gene28942:CDS |
| CTGTGTTTGGTGAATTATGG+AGG | 0.584849 | 4.4:+34611586 | MS.gene28942:CDS |
| CTGCCCGTTGGACAAGAAAG+TGG | 0.585462 | 4.4:-34612687 | None:intergenic |
| AGATATAGCTAATAGAATTG+AGG | 0.588400 | 4.4:+34612552 | MS.gene28942:CDS |
| TTTGGTGGAAGCTTTGGAGA+AGG | 0.594961 | 4.4:-34611939 | None:intergenic |
| TATTAGCTATATCTTGTGTG+TGG | 0.596055 | 4.4:-34612543 | None:intergenic |
| GCAGGACACATGATGTAAAG+AGG | 0.599723 | 4.4:+34613544 | MS.gene28942:CDS |
| CAGACGGTCTTGGGGTGGAA+AGG | 0.600589 | 4.4:+34612633 | MS.gene28942:CDS |
| CTTATGTTGAATCCTTGCCA+AGG | 0.600693 | 4.4:+34612081 | MS.gene28942:CDS |
| AGATTCTATCTTGTTCAGCA+GGG | 0.601015 | 4.4:+34613383 | MS.gene28942:CDS |
| GAGTGATTCAATAGTCGAGT+TGG | 0.601610 | 4.4:+34611674 | MS.gene28942:CDS |
| GGGAAAGCCAGACGGTCTTG+GGG | 0.602570 | 4.4:+34612625 | MS.gene28942:CDS |
| GGCCGACGTTTCGACGCCGA+AGG | 0.603179 | 4.4:+34610913 | MS.gene28942:CDS |
| CTATGCTTCCGGTCATCGGT+GGG | 0.603684 | 4.4:+34611007 | MS.gene28942:CDS |
| TTAGGAGAGGATATGTCTGG+TGG | 0.604883 | 4.4:+34611236 | MS.gene28942:CDS |
| GGTGCTCAGATGATAAATCC+AGG | 0.607693 | 4.4:-34612522 | None:intergenic |
| ATGCTGCTAAGTATGTTGGA+TGG | 0.608493 | 4.4:+34611804 | MS.gene28942:CDS |
| TGGCAAGGGTAAAGATTCCA+AGG | 0.610500 | 4.4:+34613569 | MS.gene28942:CDS |
| AGAAATGGGAAGTGTTTCGT+CGG | 0.610958 | 4.4:+34610813 | None:intergenic |
| GGCTAAGCTCTCCATCACCC+TGG | 0.611779 | 4.4:-34613292 | None:intergenic |
| GGCTTCGACTGATTATGAGA+AGG | 0.612301 | 4.4:+34613602 | MS.gene28942:CDS |
| TTATGTTGAATCCTTGCCAA+GGG | 0.615016 | 4.4:+34612082 | MS.gene28942:CDS |
| GATTCTATCTTGTTCAGCAG+GGG | 0.618909 | 4.4:+34613384 | MS.gene28942:CDS |
| ACACATGATGTAAAGAGGAA+TGG | 0.620963 | 4.4:+34613549 | MS.gene28942:CDS |
| TGATGTAAAGAGGAATGGCA+AGG | 0.621154 | 4.4:+34613554 | MS.gene28942:CDS |
| ACTGACCAGCAGTTATGTAC+CGG | 0.623263 | 4.4:-34612474 | None:intergenic |
| CGCAAGAAGAAATTCTGGCG+AGG | 0.629857 | 4.4:+34613650 | MS.gene28942:CDS |
| TCTTCTCACCATCAGCAACA+AGG | 0.630373 | 4.4:-34612663 | None:intergenic |
| GTAAAGAGCCTTGTTGCTGA+TGG | 0.632308 | 4.4:+34612655 | MS.gene28942:CDS |
| GGGTGTGTTGAATTGAGAAG+GGG | 0.632385 | 4.4:-34613449 | None:intergenic |
| AGCAAAAGGAGAGGCATATG+GGG | 0.632893 | 4.4:-34613469 | None:intergenic |
| GATGTAAAGAGGAATGGCAA+GGG | 0.633745 | 4.4:+34613555 | MS.gene28942:CDS |
| GATTCGCTGATGTCAGCACT+CGG | 0.634852 | 4.4:-34610868 | None:intergenic |
| GGAGTCCTTGCAGTCCACGC+AGG | 0.635954 | 4.4:+34613526 | MS.gene28942:CDS |
| CGCCGGCAAGTTGAAATGAG+CGG | 0.644525 | 4.4:-34610974 | None:intergenic |
| TGTGTGAGGATGATAGGAAA+AGG | 0.644810 | 4.4:+34611967 | MS.gene28942:CDS |
| ACTCCCACTAACAGGAGAGG+AGG | 0.651034 | 4.4:-34613508 | None:intergenic |
| CGAAGGAGTAGCAAAAGGAG+AGG | 0.653019 | 4.4:-34613478 | None:intergenic |
| TTAGGCAAGAAGAGAAATGG+TGG | 0.655462 | 4.4:+34611913 | MS.gene28942:CDS |
| TTTACATCATGTGTCCTGCG+TGG | 0.655545 | 4.4:-34613540 | None:intergenic |
| TGTGGCGTAGGGAAATGGAA+TGG | 0.660140 | 4.4:+34611640 | MS.gene28942:CDS |
| GGAGAGGAGGAACAGAACGA+AGG | 0.664755 | 4.4:-34613495 | None:intergenic |
| GAGAAGGTATGGTCATACGC+AGG | 0.673120 | 4.4:+34613618 | MS.gene28942:CDS |
| GAATGGTAAAGCTTGTCTTG+GGG | 0.676070 | 4.4:+34612441 | MS.gene28942:intron |
| AGGACTCCCACTAACAGGAG+AGG | 0.681765 | 4.4:-34613511 | None:intergenic |
| TCCACCAAATGGGTTGTGTG+AGG | 0.688832 | 4.4:+34611953 | MS.gene28942:CDS |
| CTAACCGGAGAGATTCGTGA+TGG | 0.691477 | 4.4:-34611297 | None:intergenic |
| TCTGTGCAACAATTTCCAGG+TGG | 0.694742 | 4.4:+34611702 | MS.gene28942:CDS |
| GAAGATGTTTCAGAGCGATG+TGG | 0.696488 | 4.4:+34610835 | MS.gene28942:CDS |
| TTGATGTACAAATCAGAGCG+AGG | 0.697670 | 4.4:-34611753 | None:intergenic |
| CTTATGAAGTAATGGCAACG+CGG | 0.715804 | 4.4:+34611730 | MS.gene28942:CDS |
| AGGCTGCTATACATGTATGG+AGG | 0.750304 | 4.4:+34612572 | MS.gene28942:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAGAAACTTAAAAAAT+CGG | + | chr4.4:34612603-34612622 | MS.gene28942:CDS | 15.0% |
| !! | TATAAGAAACTTAAAAAATC+GGG | + | chr4.4:34612604-34612623 | MS.gene28942:CDS | 15.0% |
| !!! | AATTTTTTTCCTTCTAAAAT+TGG | + | chr4.4:34612380-34612399 | MS.gene28942:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGCTG+AGG | + | chr4.4:34613042-34613061 | MS.gene28942:intron | 15.0% |
| !! | AAAACTTTAATAAGCTGAAA+TGG | + | chr4.4:34612320-34612339 | MS.gene28942:intron | 20.0% |
| !! | AATCAAAGAATAAACTCATT+TGG | + | chr4.4:34613219-34613238 | MS.gene28942:intron | 20.0% |
| !! | ACAATGATCAATCATTATTA+CGG | - | chr4.4:34613122-34613141 | None:intergenic | 20.0% |
| !! | ATAAGAAACTTAAAAAATCG+GGG | + | chr4.4:34612605-34612624 | MS.gene28942:CDS | 20.0% |
| !! | TTCAAAAATGGTTTAGTATT+TGG | + | chr4.4:34612345-34612364 | MS.gene28942:intron | 20.0% |
| !!! | TGTAATTTTTGCATATTATG+TGG | + | chr4.4:34612262-34612281 | MS.gene28942:intron | 20.0% |
| !!! | TTATTAAAGTTTTTGAACCA+TGG | - | chr4.4:34612313-34612332 | None:intergenic | 20.0% |
| ! | AAAATTCTCTCACAAAATAC+AGG | - | chr4.4:34613025-34613044 | None:intergenic | 25.0% |
| ! | AACGAGTAATTCTATGTAAT+CGG | + | chr4.4:34611404-34611423 | MS.gene28942:intron | 25.0% |
| ! | AGATATAGCTAATAGAATTG+AGG | + | chr4.4:34612552-34612571 | MS.gene28942:CDS | 25.0% |
| ! | ATGATTATATCGTGTTACAA+TGG | + | chr4.4:34612187-34612206 | MS.gene28942:intron | 25.0% |
| ! | GAAAATACTGTTCATATGTT+AGG | - | chr4.4:34613086-34613105 | None:intergenic | 25.0% |
| ! | TACCTTATTATACTGTATCT+TGG | - | chr4.4:34612776-34612795 | None:intergenic | 25.0% |
| ! | TAGCAAAAAAACAAACTAAC+CGG | - | chr4.4:34611315-34611334 | None:intergenic | 25.0% |
| ! | TATTCTTGAAAGTTATTCCA+GGG | + | chr4.4:34613275-34613294 | MS.gene28942:CDS | 25.0% |
| ! | TTATAGTATCGTCTACATAA+AGG | - | chr4.4:34613347-34613366 | None:intergenic | 25.0% |
| ! | TTTAGCAAAAGATATAATCC+TGG | + | chr4.4:34612964-34612983 | MS.gene28942:intron | 25.0% |
| !! | AGTTTTCATCCAATTTTAGA+AGG | - | chr4.4:34612392-34612411 | None:intergenic | 25.0% |
| !! | GAAAACTTAAAATGCCTTTT+TGG | + | chr4.4:34612405-34612424 | MS.gene28942:intron | 25.0% |
| AAAAGATATAATCCTGGCAA+CGG | + | chr4.4:34612970-34612989 | MS.gene28942:intron | 30.0% | |
| AACATAAAGCCACAATTGTA+CGG | - | chr4.4:34611111-34611130 | None:intergenic | 30.0% | |
| ACATCTTCAATCAACATTGT+CGG | + | chr4.4:34611464-34611483 | MS.gene28942:intron | 30.0% | |
| CTATTCTTGAAAGTTATTCC+AGG | + | chr4.4:34613274-34613293 | MS.gene28942:CDS | 30.0% | |
| GAAGTGATATGCAGTATATT+AGG | + | chr4.4:34612889-34612908 | MS.gene28942:intron | 30.0% | |
| GAATTGATGTCTGTCTAATA+TGG | - | chr4.4:34612214-34612233 | None:intergenic | 30.0% | |
| GCTGAAATGGAATTCAAAAA+TGG | + | chr4.4:34612333-34612352 | MS.gene28942:intron | 30.0% | |
| TAATGCTTTGCTTTGCATAT+AGG | + | chr4.4:34612108-34612127 | MS.gene28942:intron | 30.0% | |
| TAGGAAATAAACTGTGTTCA+TGG | + | chr4.4:34612127-34612146 | MS.gene28942:intron | 30.0% | |
| TATTAGCTATATCTTGTGTG+TGG | - | chr4.4:34612546-34612565 | None:intergenic | 30.0% | |
| TCTAAGGATTGTGATGATTA+TGG | + | chr4.4:34611879-34611898 | MS.gene28942:CDS | 30.0% | |
| TCTATTCTGTATAGTTACAG+AGG | + | chr4.4:34613170-34613189 | MS.gene28942:intron | 30.0% | |
| TCTGTATGATAAGTTTGTGT+AGG | + | chr4.4:34613145-34613164 | MS.gene28942:intron | 30.0% | |
| TTGTACAAACCAGATACTTA+AGG | + | chr4.4:34612007-34612026 | MS.gene28942:CDS | 30.0% | |
| ! | ACTGTGTTCATGGTTAATTT+TGG | + | chr4.4:34612137-34612156 | MS.gene28942:intron | 30.0% |
| ! | ATTTTCTCGCTCTTAAAGTT+TGG | + | chr4.4:34612797-34612816 | MS.gene28942:intron | 30.0% |
| ! | CTGTGTTCATGGTTAATTTT+GGG | + | chr4.4:34612138-34612157 | MS.gene28942:intron | 30.0% |
| !! | AGTTTTGGTATGTTGATAGA+GGG | + | chr4.4:34611841-34611860 | MS.gene28942:CDS | 30.0% |
| AACAGAACTATTAATCGCCA+TGG | - | chr4.4:34612036-34612055 | None:intergenic | 35.0% | |
| ACACATGATGTAAAGAGGAA+TGG | + | chr4.4:34613549-34613568 | MS.gene28942:CDS | 35.0% | |
| AGAATGGTAAAGCTTGTCTT+GGG | + | chr4.4:34612440-34612459 | MS.gene28942:intron | 35.0% | |
| AGATTCTATCTTGTTCAGCA+GGG | + | chr4.4:34613383-34613402 | MS.gene28942:CDS | 35.0% | |
| ATGCAGTATATTAGGTGCAT+CGG | + | chr4.4:34612897-34612916 | MS.gene28942:intron | 35.0% | |
| ATTATGGTAGACCTTCTGTT+AGG | + | chr4.4:34611895-34611914 | MS.gene28942:CDS | 35.0% | |
| GAAACTGTGAAGTGTGTTAA+CGG | + | chr4.4:34611157-34611176 | MS.gene28942:intron | 35.0% | |
| GATTCTGGCCATTATGTTAA+AGG | - | chr4.4:34613316-34613335 | None:intergenic | 35.0% | |
| GGCCAAGATACAGTATAATA+AGG | + | chr4.4:34612771-34612790 | MS.gene28942:CDS | 35.0% | |
| GTCTTGGGGATATAATATAC+CGG | + | chr4.4:34612455-34612474 | MS.gene28942:CDS | 35.0% | |
| GTGTTAGTAACTATGAAGCA+CGG | + | chr4.4:34611340-34611359 | MS.gene28942:intron | 35.0% | |
| TCTGTATAGTTACAGAGGTT+AGG | + | chr4.4:34613175-34613194 | MS.gene28942:intron | 35.0% | |
| TGCAGAAGTTGAAATGATGA+AGG | + | chr4.4:34611193-34611212 | MS.gene28942:intron | 35.0% | |
| TGGTGGAACTTATGAAGTAA+TGG | + | chr4.4:34611722-34611741 | MS.gene28942:CDS | 35.0% | |
| TTATGTTGAATCCTTGCCAA+GGG | + | chr4.4:34612082-34612101 | MS.gene28942:CDS | 35.0% | |
| TTCTATGTAATCGGATGTGT+CGG | + | chr4.4:34611413-34611432 | MS.gene28942:intron | 35.0% | |
| ! | AAGCAAAGCATTATTACCCT+TGG | - | chr4.4:34612101-34612120 | None:intergenic | 35.0% |
| ! | CTGCATTGGTAAAACCAAAA+AGG | - | chr4.4:34612422-34612441 | None:intergenic | 35.0% |
| ! | GAGCTTAGCCTTTAACATAA+TGG | + | chr4.4:34613305-34613324 | MS.gene28942:CDS | 35.0% |
| ! | TAGTTCTGTTCTTGCTGAAA+TGG | + | chr4.4:34612046-34612065 | MS.gene28942:CDS | 35.0% |
| !! | ATAAAGGACATCATCGATTC+TGG | - | chr4.4:34613331-34613350 | None:intergenic | 35.0% |
| !! | CAGTTTTGGTATGTTGATAG+AGG | + | chr4.4:34611840-34611859 | MS.gene28942:CDS | 35.0% |
| !! | GCTGAAATCAGTTTTATCCA+TGG | + | chr4.4:34612293-34612312 | MS.gene28942:intron | 35.0% |
| !! | GGTTTTGTGATACACAGTTT+TGG | + | chr4.4:34611826-34611845 | MS.gene28942:CDS | 35.0% |
| !! | GTTCATGGTTAATTTTGGGT+TGG | + | chr4.4:34612142-34612161 | MS.gene28942:intron | 35.0% |
| !!! | TTGGTTTTACCAATGCAGAA+TGG | + | chr4.4:34612424-34612443 | MS.gene28942:intron | 35.0% |
| AAGCATTATTACCCTTGGCA+AGG | - | chr4.4:34612096-34612115 | None:intergenic | 40.0% | |
| AAGGATTCAACATAAGCAGC+AGG | - | chr4.4:34612077-34612096 | None:intergenic | 40.0% | |
| AGAAAAAAGCAATGTGGCGT+AGG | + | chr4.4:34611628-34611647 | MS.gene28942:CDS | 40.0% | |
| AGAACCACTTTCTTGTCCAA+CGG | + | chr4.4:34612683-34612702 | MS.gene28942:CDS | 40.0% | |
| ATAAAGCCACAATTGTACGG+AGG | - | chr4.4:34611108-34611127 | None:intergenic | 40.0% | |
| ATATACCGGTACATAACTGC+TGG | + | chr4.4:34612469-34612488 | MS.gene28942:CDS | 40.0% | |
| ATGCTGCTAAGTATGTTGGA+TGG | + | chr4.4:34611804-34611823 | MS.gene28942:CDS | 40.0% | |
| CAAGCTTTACCATTCTGCAT+TGG | - | chr4.4:34612436-34612455 | None:intergenic | 40.0% | |
| CACCACAGAAAAAAGCAATG+TGG | + | chr4.4:34611622-34611641 | MS.gene28942:CDS | 40.0% | |
| CAGAATGGTAAAGCTTGTCT+TGG | + | chr4.4:34612439-34612458 | MS.gene28942:intron | 40.0% | |
| CAGATTCTATCTTGTTCAGC+AGG | + | chr4.4:34613382-34613401 | MS.gene28942:CDS | 40.0% | |
| CGACTGATTATGAGAAGGTA+TGG | + | chr4.4:34613607-34613626 | MS.gene28942:CDS | 40.0% | |
| CTCACAAAATACAGGCGTAA+GGG | - | chr4.4:34613017-34613036 | None:intergenic | 40.0% | |
| CTGTTAGGCAAGAAGAGAAA+TGG | + | chr4.4:34611910-34611929 | MS.gene28942:CDS | 40.0% | |
| CTTATGAAGTAATGGCAACG+CGG | + | chr4.4:34611730-34611749 | MS.gene28942:CDS | 40.0% | |
| CTTATGTTGAATCCTTGCCA+AGG | + | chr4.4:34612081-34612100 | MS.gene28942:CDS | 40.0% | |
| GAAAAAAGCAATGTGGCGTA+GGG | + | chr4.4:34611629-34611648 | MS.gene28942:CDS | 40.0% | |
| GAATGGTAAAGCTTGTCTTG+GGG | + | chr4.4:34612441-34612460 | MS.gene28942:intron | 40.0% | |
| GAGTGATTCAATAGTCGAGT+TGG | + | chr4.4:34611674-34611693 | MS.gene28942:CDS | 40.0% | |
| GATGTAAAGAGGAATGGCAA+GGG | + | chr4.4:34613555-34613574 | MS.gene28942:CDS | 40.0% | |
| GATTCTATCTTGTTCAGCAG+GGG | + | chr4.4:34613384-34613403 | MS.gene28942:CDS | 40.0% | |
| GATTGTGTTGGGTGATTCTA+AGG | + | chr4.4:34611863-34611882 | MS.gene28942:CDS | 40.0% | |
| TAGTTACAGAGGTTAGGCAT+CGG | + | chr4.4:34613181-34613200 | MS.gene28942:intron | 40.0% | |
| TATATTAGGTGCATCGGATC+TGG | + | chr4.4:34612903-34612922 | MS.gene28942:intron | 40.0% | |
| TATTCTCCTCCGTACAATTG+TGG | + | chr4.4:34611099-34611118 | MS.gene28942:intron | 40.0% | |
| TCTCACAAAATACAGGCGTA+AGG | - | chr4.4:34613018-34613037 | None:intergenic | 40.0% | |
| TGAAAGTTATTCCAGGGTGA+TGG | + | chr4.4:34613281-34613300 | MS.gene28942:CDS | 40.0% | |
| TGATGTAAAGAGGAATGGCA+AGG | + | chr4.4:34613554-34613573 | MS.gene28942:CDS | 40.0% | |
| TGCTGCTAAGTATGTTGGAT+GGG | + | chr4.4:34611805-34611824 | MS.gene28942:CDS | 40.0% | |
| TGTGTGAGGATGATAGGAAA+AGG | + | chr4.4:34611967-34611986 | MS.gene28942:CDS | 40.0% | |
| TTAGGCAAGAAGAGAAATGG+TGG | + | chr4.4:34611913-34611932 | MS.gene28942:CDS | 40.0% | |
| TTCTCTTCTTGCCTAACAGA+AGG | - | chr4.4:34611909-34611928 | None:intergenic | 40.0% | |
| TTGAGGCTGCTATACATGTA+TGG | + | chr4.4:34612569-34612588 | MS.gene28942:CDS | 40.0% | |
| TTGATGTACAAATCAGAGCG+AGG | - | chr4.4:34611756-34611775 | None:intergenic | 40.0% | |
| ! | AAACGTGACTTGGATTTGAC+CGG | + | chr4.4:34611054-34611073 | MS.gene28942:CDS | 40.0% |
| ! | CGACTGTGTTTGGTGAATTA+TGG | + | chr4.4:34611583-34611602 | MS.gene28942:CDS | 40.0% |
| ! | CTGTGTTTGGTGAATTATGG+AGG | + | chr4.4:34611586-34611605 | MS.gene28942:CDS | 40.0% |
| ! | GAAAGTTCTAGCAGCTTCTA+CGG | + | chr4.4:34610892-34610911 | MS.gene28942:CDS | 40.0% |
| ! | GTTGATAGAGGGATTGTGTT+GGG | + | chr4.4:34611852-34611871 | MS.gene28942:CDS | 40.0% |
| ! | GTTTGGTGAATTATGGAGGT+TGG | + | chr4.4:34611590-34611609 | MS.gene28942:CDS | 40.0% |
| ! | TAGCAAAAGGAGAGGCATAT+GGG | - | chr4.4:34613473-34613492 | None:intergenic | 40.0% |
| ! | TGGAACATTGTTTTCCTTGC+AGG | + | chr4.4:34613239-34613258 | MS.gene28942:intron | 40.0% |
| ! | TGTTGATAGAGGGATTGTGT+TGG | + | chr4.4:34611851-34611870 | MS.gene28942:CDS | 40.0% |
| ! | TGTTTTCCTTGCAGGATGTA+GGG | + | chr4.4:34613247-34613266 | MS.gene28942:intron | 40.0% |
| ! | TTGTTTTCCTTGCAGGATGT+AGG | + | chr4.4:34613246-34613265 | MS.gene28942:intron | 40.0% |
| !! | ATATGTCTGGTGGTGGAAAA+GGG | + | chr4.4:34611246-34611265 | MS.gene28942:CDS | 40.0% |
| !! | CTTTTAGGAGAGGATATGTC+TGG | + | chr4.4:34611233-34611252 | MS.gene28942:CDS | 40.0% |
| !! | GGAGTCATTCGCTTTTGAAT+AGG | - | chr4.4:34613426-34613445 | None:intergenic | 40.0% |
| !! | TGGGAAAGATGTTGCTGTTT+GGG | + | chr4.4:34611026-34611045 | MS.gene28942:CDS | 40.0% |
| !!! | CGTTTTGCGAAGTTGCTTTT+AGG | + | chr4.4:34611218-34611237 | MS.gene28942:CDS | 40.0% |
| AAAAATCGGGGAAAGCCAGA+CGG | + | chr4.4:34612617-34612636 | MS.gene28942:CDS | 45.0% | |
| AAGGGTAAAGATTCCAAGGC+CGG | + | chr4.4:34613573-34613592 | MS.gene28942:CDS | 45.0% | |
| ACTGACCAGCAGTTATGTAC+CGG | - | chr4.4:34612477-34612496 | None:intergenic | 45.0% | |
| ACTTCATAAGTTCCACCACC+TGG | - | chr4.4:34611720-34611739 | None:intergenic | 45.0% | |
| AGGCTGCTATACATGTATGG+AGG | + | chr4.4:34612572-34612591 | MS.gene28942:CDS | 45.0% | |
| AGTTACAGAGGTTAGGCATC+GGG | + | chr4.4:34613182-34613201 | MS.gene28942:intron | 45.0% | |
| ATCAGTCGAAGCCAACTTTC+CGG | - | chr4.4:34613595-34613614 | None:intergenic | 45.0% | |
| CAGAACGAAGGAGTAGCAAA+AGG | - | chr4.4:34613486-34613505 | None:intergenic | 45.0% | |
| CAGAATTTCTTCTTGCGCTG+AGG | - | chr4.4:34613647-34613666 | None:intergenic | 45.0% | |
| CCTGCATTGAAGAAGCTTGA+CGG | + | chr4.4:34611780-34611799 | MS.gene28942:CDS | 45.0% | |
| CCTGGAAATTGTTGCACAGA+AGG | - | chr4.4:34611702-34611721 | None:intergenic | 45.0% | |
| CCTTCTGTGCAACAATTTCC+AGG | + | chr4.4:34611699-34611718 | MS.gene28942:CDS | 45.0% | |
| CGGAATGCTGCTAAGTATGT+TGG | + | chr4.4:34611800-34611819 | MS.gene28942:CDS | 45.0% | |
| CTCAGCGCAAGAAGAAATTC+TGG | + | chr4.4:34613645-34613664 | MS.gene28942:CDS | 45.0% | |
| CTCCAAAGCTTCCACCAAAT+GGG | + | chr4.4:34611943-34611962 | MS.gene28942:CDS | 45.0% | |
| GAACCACTTTCTTGTCCAAC+GGG | + | chr4.4:34612684-34612703 | MS.gene28942:CDS | 45.0% | |
| GAAGATGTTTCAGAGCGATG+TGG | + | chr4.4:34610835-34610854 | MS.gene28942:CDS | 45.0% | |
| GCAGGACACATGATGTAAAG+AGG | + | chr4.4:34613544-34613563 | MS.gene28942:CDS | 45.0% | |
| GGCTTCGACTGATTATGAGA+AGG | + | chr4.4:34613602-34613621 | MS.gene28942:CDS | 45.0% | |
| GGGGTGTGTTGAATTGAGAA+GGG | - | chr4.4:34613453-34613472 | None:intergenic | 45.0% | |
| GGGTGTGTTGAATTGAGAAG+GGG | - | chr4.4:34613452-34613471 | None:intergenic | 45.0% | |
| GGTGCTCAGATGATAAATCC+AGG | - | chr4.4:34612525-34612544 | None:intergenic | 45.0% | |
| GTAATTGCAGCGACTGTGTT+TGG | + | chr4.4:34611573-34611592 | MS.gene28942:intron | 45.0% | |
| TCATCCTCACACAACCCATT+TGG | - | chr4.4:34611960-34611979 | None:intergenic | 45.0% | |
| TCCTCAAACAGCGCTAGATA+TGG | + | chr4.4:34612750-34612769 | MS.gene28942:CDS | 45.0% | |
| TCTCCAAAGCTTCCACCAAA+TGG | + | chr4.4:34611942-34611961 | MS.gene28942:CDS | 45.0% | |
| TCTGTGCAACAATTTCCAGG+TGG | + | chr4.4:34611702-34611721 | MS.gene28942:CDS | 45.0% | |
| TCTTCTCACCATCAGCAACA+AGG | - | chr4.4:34612666-34612685 | None:intergenic | 45.0% | |
| TGAATGTCTTCTTGACTGCC+TGG | + | chr4.4:34612504-34612523 | MS.gene28942:CDS | 45.0% | |
| TGGCAAGGGTAAAGATTCCA+AGG | + | chr4.4:34613569-34613588 | MS.gene28942:CDS | 45.0% | |
| TGGGGTGTGTTGAATTGAGA+AGG | - | chr4.4:34613454-34613473 | None:intergenic | 45.0% | |
| TGTTGAATTGAGAAGGGGCT+GGG | - | chr4.4:34613447-34613466 | None:intergenic | 45.0% | |
| TTAGGAGAGGATATGTCTGG+TGG | + | chr4.4:34611236-34611255 | MS.gene28942:CDS | 45.0% | |
| TTGGGATCACAAACGTGACT+TGG | + | chr4.4:34611044-34611063 | MS.gene28942:CDS | 45.0% | |
| TTGTTCTATGTACCGTTGCC+AGG | - | chr4.4:34612985-34613004 | None:intergenic | 45.0% | |
| TTTACATCATGTGTCCTGCG+TGG | - | chr4.4:34613543-34613562 | None:intergenic | 45.0% | |
| TTTGAGGAAGCCCAGGAAAT+CGG | - | chr4.4:34612738-34612757 | None:intergenic | 45.0% | |
| ! | AACCCATTTGGTGGAAGCTT+TGG | - | chr4.4:34611948-34611967 | None:intergenic | 45.0% |
| ! | AGCAAAAGGAGAGGCATATG+GGG | - | chr4.4:34613472-34613491 | None:intergenic | 45.0% |
| ! | ATGGGTTGTGTGAGGATGAT+AGG | + | chr4.4:34611961-34611980 | MS.gene28942:CDS | 45.0% |
| ! | GTAGCAAAAGGAGAGGCATA+TGG | - | chr4.4:34613474-34613493 | None:intergenic | 45.0% |
| ! | GTGGGAAAGATGTTGCTGTT+TGG | + | chr4.4:34611025-34611044 | MS.gene28942:CDS | 45.0% |
| !! | CAACATTGTCGGTGCTTTTG+AGG | + | chr4.4:34611475-34611494 | MS.gene28942:intron | 45.0% |
| !! | GATATGTCTGGTGGTGGAAA+AGG | + | chr4.4:34611245-34611264 | MS.gene28942:CDS | 45.0% |
| !! | GTAAAGAGCCTTGTTGCTGA+TGG | + | chr4.4:34612655-34612674 | MS.gene28942:CDS | 45.0% |
| !! | TATGTCTGGTGGTGGAAAAG+GGG | + | chr4.4:34611247-34611266 | MS.gene28942:CDS | 45.0% |
| !! | TTTGGTGGAAGCTTTGGAGA+AGG | - | chr4.4:34611942-34611961 | None:intergenic | 45.0% |
| !!! | CGCCACATTGCTTTTTTCTG+TGG | - | chr4.4:34611627-34611646 | None:intergenic | 45.0% |
| !!! | GCTTTTTTCTGTGGTGCTAG+TGG | - | chr4.4:34611618-34611637 | None:intergenic | 45.0% |
| !!! | TGCGAAGTTGCTTTTAGGAG+AGG | + | chr4.4:34611223-34611242 | MS.gene28942:CDS | 45.0% |
| AACGCCATCACGAATCTCTC+CGG | + | chr4.4:34611293-34611312 | MS.gene28942:CDS | 50.0% | |
| ACATCTTTCCCACCGATGAC+CGG | - | chr4.4:34611018-34611037 | None:intergenic | 50.0% | |
| AGATTCCAAGGCCGGAAAGT+TGG | + | chr4.4:34613581-34613600 | MS.gene28942:CDS | 50.0% | |
| AGCAATGTGGCGTAGGGAAA+TGG | + | chr4.4:34611635-34611654 | MS.gene28942:CDS | 50.0% | |
| CCAGATACTTAAGGCTGCCA+TGG | + | chr4.4:34612016-34612035 | MS.gene28942:CDS | 50.0% | |
| CCATGGCAGCCTTAAGTATC+TGG | - | chr4.4:34612019-34612038 | None:intergenic | 50.0% | |
| CCGTCAAGCTTCTTCAATGC+AGG | - | chr4.4:34611783-34611802 | None:intergenic | 50.0% | |
| CGAAGGAGTAGCAAAAGGAG+AGG | - | chr4.4:34613481-34613500 | None:intergenic | 50.0% | |
| CGCAAGAAGAAATTCTGGCG+AGG | + | chr4.4:34613650-34613669 | MS.gene28942:CDS | 50.0% | |
| CTAACCGGAGAGATTCGTGA+TGG | - | chr4.4:34611300-34611319 | None:intergenic | 50.0% | |
| GATTCGCTGATGTCAGCACT+CGG | - | chr4.4:34610871-34610890 | None:intergenic | 50.0% | |
| GCCATATCTAGCGCTGTTTG+AGG | - | chr4.4:34612754-34612773 | None:intergenic | 50.0% | |
| GTGCAACAATTTCCAGGTGG+TGG | + | chr4.4:34611705-34611724 | MS.gene28942:CDS | 50.0% | |
| GTGTTGAATTGAGAAGGGGC+TGG | - | chr4.4:34613448-34613467 | None:intergenic | 50.0% | |
| GTTCCTCCTCTCCTGTTAGT+GGG | + | chr4.4:34613505-34613524 | MS.gene28942:CDS | 50.0% | |
| TCATTTCAACTTGCCGGCGA+CGG | + | chr4.4:34610978-34610997 | MS.gene28942:CDS | 50.0% | |
| TCCTCACACAACCCATTTGG+TGG | - | chr4.4:34611957-34611976 | None:intergenic | 50.0% | |
| TCTATCTTGTTCAGCAGGGG+AGG | + | chr4.4:34613387-34613406 | MS.gene28942:CDS | 50.0% | |
| TGAATGAGCGAGCACTCTAC+CGG | - | chr4.4:34611076-34611095 | None:intergenic | 50.0% | |
| TGTGGCGTAGGGAAATGGAA+TGG | + | chr4.4:34611640-34611659 | MS.gene28942:CDS | 50.0% | |
| TGTTCCTCCTCTCCTGTTAG+TGG | + | chr4.4:34613504-34613523 | MS.gene28942:CDS | 50.0% | |
| ! | GAGAAGGTATGGTCATACGC+AGG | + | chr4.4:34613618-34613637 | MS.gene28942:CDS | 50.0% |
| ! | TTGTTCAGCAGGGGAGGTTT+TGG | + | chr4.4:34613393-34613412 | MS.gene28942:CDS | 50.0% |
| !! | AGCTTGAAACGCCGATTTCC+TGG | + | chr4.4:34612724-34612743 | MS.gene28942:CDS | 50.0% |
| !! | GAGTGCTGACATCAGCGAAT+CGG | + | chr4.4:34610870-34610889 | MS.gene28942:CDS | 50.0% |
| !! | GCTTGAAACGCCGATTTCCT+GGG | + | chr4.4:34612725-34612744 | MS.gene28942:CDS | 50.0% |
| !! | TCCACCAAATGGGTTGTGTG+AGG | + | chr4.4:34611953-34611972 | MS.gene28942:CDS | 50.0% |
| ACTCCCACTAACAGGAGAGG+AGG | - | chr4.4:34613511-34613530 | None:intergenic | 55.0% | |
| AGACTGCCCTACATCCTGCA+AGG | - | chr4.4:34613256-34613275 | None:intergenic | 55.0% | |
| AGCTGAGCTGGAAGCTCCTT+CGG | - | chr4.4:34610932-34610951 | None:intergenic | 55.0% | |
| AGGACTCCCACTAACAGGAG+AGG | - | chr4.4:34613514-34613533 | None:intergenic | 55.0% | |
| CAGGCTATGCTTCCGGTCAT+CGG | + | chr4.4:34611003-34611022 | MS.gene28942:CDS | 55.0% | |
| CGCCGCTCATTTCAACTTGC+CGG | + | chr4.4:34610972-34610991 | MS.gene28942:CDS | 55.0% | |
| CTATGCTTCCGGTCATCGGT+GGG | + | chr4.4:34611007-34611026 | MS.gene28942:CDS | 55.0% | |
| CTGCAAGGACTCCCACTAAC+AGG | - | chr4.4:34613519-34613538 | None:intergenic | 55.0% | |
| CTGCCCGTTGGACAAGAAAG+TGG | - | chr4.4:34612690-34612709 | None:intergenic | 55.0% | |
| GGAGAGGAGGAACAGAACGA+AGG | - | chr4.4:34613498-34613517 | None:intergenic | 55.0% | |
| GGAGAGGATATGTCTGGTGG+TGG | + | chr4.4:34611239-34611258 | MS.gene28942:CDS | 55.0% | |
| ! | CGCCGGCAAGTTGAAATGAG+CGG | - | chr4.4:34610977-34610996 | None:intergenic | 55.0% |
| ! | TGGCGAGAGATTAGCTGAGC+TGG | - | chr4.4:34610944-34610963 | None:intergenic | 55.0% |
| !! | AGAGGTTAGGCATCGGGAGA+AGG | + | chr4.4:34613188-34613207 | MS.gene28942:intron | 55.0% |
| !! | GAGGTTAGGCATCGGGAGAA+GGG | + | chr4.4:34613189-34613208 | MS.gene28942:intron | 55.0% |
| !! | TTCAGCAGGGGAGGTTTTGG+TGG | + | chr4.4:34613396-34613415 | MS.gene28942:CDS | 55.0% |
| AAAGCCAGACGGTCTTGGGG+TGG | + | chr4.4:34612628-34612647 | MS.gene28942:CDS | 60.0% | |
| AAATGAGCGGCGAGCTGACG+TGG | - | chr4.4:34610964-34610983 | None:intergenic | 60.0% | |
| AGCGCTGTTTGAGGAAGCCC+AGG | - | chr4.4:34612745-34612764 | None:intergenic | 60.0% | |
| CAGACGGTCTTGGGGTGGAA+AGG | + | chr4.4:34612633-34612652 | MS.gene28942:CDS | 60.0% | |
| CGAAGCCAACTTTCCGGCCT+TGG | - | chr4.4:34613589-34613608 | None:intergenic | 60.0% | |
| CTTTCCACCCCAAGACCGTC+TGG | - | chr4.4:34612635-34612654 | None:intergenic | 60.0% | |
| GCAGTAGTGTCTCTGCCCGT+TGG | - | chr4.4:34612702-34612721 | None:intergenic | 60.0% | |
| GCTATGCTTCCGGTCATCGG+TGG | + | chr4.4:34611006-34611025 | MS.gene28942:CDS | 60.0% | |
| GGCTAAGCTCTCCATCACCC+TGG | - | chr4.4:34613295-34613314 | None:intergenic | 60.0% | |
| GGGAAAGCCAGACGGTCTTG+GGG | + | chr4.4:34612625-34612644 | MS.gene28942:CDS | 60.0% | |
| GGGGAAAGCCAGACGGTCTT+GGG | + | chr4.4:34612624-34612643 | MS.gene28942:CDS | 60.0% | |
| ! | CTCCTTCGGCGTCGAAACGT+CGG | - | chr4.4:34610918-34610937 | None:intergenic | 60.0% |
| ! | TGTGTCCTGCGTGGACTGCA+AGG | - | chr4.4:34613534-34613553 | None:intergenic | 60.0% |
| CGGGGAAAGCCAGACGGTCT+TGG | + | chr4.4:34612623-34612642 | MS.gene28942:CDS | 65.0% | |
| GACGGCGCAGGCTATGCTTC+CGG | + | chr4.4:34610996-34611015 | MS.gene28942:CDS | 65.0% | |
| GGAGTCCTTGCAGTCCACGC+AGG | + | chr4.4:34613526-34613545 | MS.gene28942:CDS | 65.0% | |
| AGCATAGCCTGCGCCGTCGC+CGG | - | chr4.4:34610994-34611013 | None:intergenic | 70.0% | |
| GGCCGACGTTTCGACGCCGA+AGG | + | chr4.4:34610913-34610932 | MS.gene28942:CDS | 70.0% | |
| CAACTTGCCGGCGACGGCGC+AGG | + | chr4.4:34610984-34611003 | MS.gene28942:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34610817 | 34613689 | 34610817 | ID=MS.gene28942 |
| chr4.4 | mRNA | 34610817 | 34613689 | 34610817 | ID=MS.gene28942.t1;Parent=MS.gene28942 |
| chr4.4 | exon | 34610817 | 34611075 | 34610817 | ID=MS.gene28942.t1.exon1;Parent=MS.gene28942.t1 |
| chr4.4 | CDS | 34610817 | 34611075 | 34610817 | ID=cds.MS.gene28942.t1;Parent=MS.gene28942.t1 |
| chr4.4 | exon | 34611198 | 34611314 | 34611198 | ID=MS.gene28942.t1.exon2;Parent=MS.gene28942.t1 |
| chr4.4 | CDS | 34611198 | 34611314 | 34611198 | ID=cds.MS.gene28942.t1;Parent=MS.gene28942.t1 |
| chr4.4 | exon | 34611583 | 34612103 | 34611583 | ID=MS.gene28942.t1.exon3;Parent=MS.gene28942.t1 |
| chr4.4 | CDS | 34611583 | 34612103 | 34611583 | ID=cds.MS.gene28942.t1;Parent=MS.gene28942.t1 |
| chr4.4 | exon | 34612442 | 34612792 | 34612442 | ID=MS.gene28942.t1.exon4;Parent=MS.gene28942.t1 |
| chr4.4 | CDS | 34612442 | 34612792 | 34612442 | ID=cds.MS.gene28942.t1;Parent=MS.gene28942.t1 |
| chr4.4 | exon | 34613261 | 34613689 | 34613261 | ID=MS.gene28942.t1.exon5;Parent=MS.gene28942.t1 |
| chr4.4 | CDS | 34613261 | 34613689 | 34613261 | ID=cds.MS.gene28942.t1;Parent=MS.gene28942.t1 |
| Gene Sequence |
| Protein sequence |
