Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29008.t1 | AAB42144.1 | 89.5 | 306 | 32 | 0 | 1 | 306 | 1351 | 1656 | 4.00E-155 | 557.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29008.t1 | F4I1L3 | 61.8 | 306 | 117 | 0 | 1 | 306 | 1450 | 1755 | 1.8e-111 | 404.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29008.t1 | A0A392MBC2 | 89.5 | 306 | 32 | 0 | 1 | 306 | 45 | 350 | 5.9e-156 | 560.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene29008 | 0.805786 | 1.13E-49 | -1.69E-46 |
| MS.gene051575 | MS.gene29008 | 0.802052 | 6.74E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene29008 | 0.805381 | 1.37E-49 | -1.69E-46 |
| MS.gene05531 | MS.gene29008 | 0.808114 | 3.63E-50 | -1.69E-46 |
| MS.gene055952 | MS.gene29008 | 0.815029 | 1.14E-51 | -1.69E-46 |
| MS.gene058515 | MS.gene29008 | 0.81618 | 6.32E-52 | -1.69E-46 |
| MS.gene059276 | MS.gene29008 | 0.801533 | 8.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29008.t1 | MTR_3g073860 | 88.889 | 306 | 34 | 0 | 1 | 306 | 1350 | 1655 | 0.0 | 575 |
| MS.gene29008.t1 | MTR_3g073820 | 90.643 | 171 | 16 | 0 | 1 | 171 | 1313 | 1483 | 2.55e-101 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29008.t1 | AT1G36180 | 61.765 | 306 | 117 | 0 | 1 | 306 | 1450 | 1755 | 3.83e-131 | 415 |
| MS.gene29008.t1 | AT1G36160 | 61.765 | 306 | 117 | 0 | 1 | 306 | 1349 | 1654 | 1.16e-129 | 411 |
| MS.gene29008.t1 | AT1G36160 | 61.765 | 306 | 117 | 0 | 1 | 306 | 1349 | 1654 | 1.16e-129 | 411 |
Find 98 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTCAAGGCCGGTTCTTT+TGG | 0.243130 | 3.2:-66576865 | MS.gene29008:CDS |
| GTTGCTGCTAAGTAAATTAA+AGG | 0.269817 | 3.2:+66576784 | None:intergenic |
| AGTCACAATTACTTGGAATT+AGG | 0.275259 | 3.2:+66577813 | None:intergenic |
| GTCCTTCCAGACGGGAATTC+AGG | 0.305442 | 3.2:+66576913 | None:intergenic |
| ATTTACTTAGCAGCAACTTC+TGG | 0.349966 | 3.2:-66576778 | MS.gene29008:CDS |
| AACAACAGTTGAGGCAATCT+TGG | 0.362349 | 3.2:-66577679 | MS.gene29008:CDS |
| CCTCCTCGGCCACACTTAAA+CGG | 0.367122 | 3.2:+66576752 | None:intergenic |
| GAATGAAAACTATCAACCTT+TGG | 0.397666 | 3.2:-66577287 | MS.gene29008:CDS |
| AATGAAAACTATCAACCTTT+GGG | 0.410806 | 3.2:-66577286 | MS.gene29008:CDS |
| GCCAAAAGAACCGGCCTTGA+AGG | 0.413854 | 3.2:+66576864 | None:intergenic |
| ATTGAGTCCAGGAGGACGTT+TGG | 0.423583 | 3.2:+66576975 | None:intergenic |
| CTCCTCGGCCACACTTAAAC+GGG | 0.428590 | 3.2:+66576753 | None:intergenic |
| TGAGGCAATCTTGGAAGATC+TGG | 0.434123 | 3.2:-66577670 | MS.gene29008:CDS |
| GGTGTAAGAATGCACAAATT+AGG | 0.435684 | 3.2:-66577624 | MS.gene29008:CDS |
| CCCGTCTGGAAGGACAATAT+TGG | 0.436965 | 3.2:-66576905 | MS.gene29008:CDS |
| CACGTAAGAGTGAAAGAAAA+AGG | 0.438141 | 3.2:+66576506 | None:intergenic |
| TTGTGTGGGAAGTCAAGCTT+TGG | 0.438654 | 3.2:-66577596 | MS.gene29008:CDS |
| TTCAAATGACGTGACCTTCA+AGG | 0.442848 | 3.2:-66576878 | MS.gene29008:CDS |
| AGACAGTGGGTGTCGGGCGG+TGG | 0.443854 | 3.2:+66576472 | None:intergenic |
| TACAGTTCAGTCACTGTAAA+GGG | 0.445478 | 3.2:-66577331 | MS.gene29008:CDS |
| GTGATCGGAATCTGAGTTGC+AGG | 0.450253 | 3.2:+66576318 | None:intergenic |
| GTTCCTGCCAAACGTCCTCC+TGG | 0.451169 | 3.2:-66576982 | MS.gene29008:CDS |
| ATGATGTTGGCATGGTATCC+TGG | 0.465736 | 3.2:-66576954 | MS.gene29008:CDS |
| TTCTCCTGGGCCAAAAGAAC+CGG | 0.467436 | 3.2:+66576855 | None:intergenic |
| TGAGAGAGACAGTGGGTGTC+GGG | 0.468984 | 3.2:+66576466 | None:intergenic |
| CTAAAGTACATATCTTCTCC+TGG | 0.475735 | 3.2:+66576841 | None:intergenic |
| GGCGTTTGTCAGTCGGTGAT+CGG | 0.480281 | 3.2:+66576303 | None:intergenic |
| TTTGCTTGCGGATGATATAG+AGG | 0.480941 | 3.2:+66577853 | None:intergenic |
| GGAAAGAAGGACAAACTTGT+TGG | 0.488054 | 3.2:+66576355 | None:intergenic |
| TAGGTCCCTAATGGGAGTAA+TGG | 0.488799 | 3.2:-66577934 | None:intergenic |
| AGTCCAGGAGGACGTTTGGC+AGG | 0.492839 | 3.2:+66576979 | None:intergenic |
| CTACAGTTCAGTCACTGTAA+AGG | 0.497271 | 3.2:-66577332 | MS.gene29008:CDS |
| AAGTTCGGGCGTTTGTCAGT+CGG | 0.499620 | 3.2:+66576296 | None:intergenic |
| TGGCATGGTATCCTGGTTGA+TGG | 0.501443 | 3.2:-66576947 | MS.gene29008:CDS |
| GTGAGAGAGACAGTGGGTGT+CGG | 0.504845 | 3.2:+66576465 | None:intergenic |
| AATGGGAGTAATGGAGGAGT+TGG | 0.508460 | 3.2:-66577925 | MS.gene29008:CDS |
| CGTTTGAAGAAGCGGAAAGA+AGG | 0.512440 | 3.2:+66576342 | None:intergenic |
| AGGAAAATTAACATCGAAGC+TGG | 0.513533 | 3.2:-66577711 | MS.gene29008:CDS |
| ACAGCATGTGGACAAGCAAA+TGG | 0.518240 | 3.2:-66577570 | MS.gene29008:CDS |
| TGCCCGTTTAAGTGTGGCCG+AGG | 0.520482 | 3.2:-66576755 | MS.gene29008:CDS |
| GTGGACAAGCAAATGGTGCT+TGG | 0.525095 | 3.2:-66577563 | MS.gene29008:CDS |
| TTGCAGGTCGTTTGAAGAAG+CGG | 0.528753 | 3.2:+66576334 | None:intergenic |
| CGGGAAATCCATTCCTCTGT+CGG | 0.530916 | 3.2:-66577645 | MS.gene29008:CDS |
| CCAATATTGTCCTTCCAGAC+GGG | 0.539886 | 3.2:+66576905 | None:intergenic |
| TGTACGCCTGAATTCCCGTC+TGG | 0.541303 | 3.2:-66576919 | MS.gene29008:CDS |
| ACCAATATTGTCCTTCCAGA+CGG | 0.545136 | 3.2:+66576904 | None:intergenic |
| AATTCAAATAGCCAAAGATA+AGG | 0.554373 | 3.2:-66577067 | MS.gene29008:CDS |
| CGCCTGAATTCCCGTCTGGA+AGG | 0.554705 | 3.2:-66576915 | MS.gene29008:CDS |
| GTCATTGTAAACAATGTGAC+TGG | 0.558517 | 3.2:-66577537 | MS.gene29008:CDS |
| GTTAAAGCTTGTTTCAGAGT+CGG | 0.559060 | 3.2:-66576730 | MS.gene29008:intron |
| CCTCCTGGACTCAATGATGT+TGG | 0.561779 | 3.2:-66576967 | MS.gene29008:CDS |
| TTCTTACACCGACAGAGGAA+TGG | 0.562208 | 3.2:+66577637 | None:intergenic |
| ACTGTAAAGGGTCCGCTGCA+TGG | 0.564305 | 3.2:-66577319 | MS.gene29008:CDS |
| GGACGTTTGGCAGGAACAAG+AGG | 0.567974 | 3.2:+66576988 | None:intergenic |
| TTCTGGTGCCCGTTTAAGTG+TGG | 0.572790 | 3.2:-66576761 | MS.gene29008:CDS |
| ACATGGTCAATTCAACAGAC+AGG | 0.574706 | 3.2:-66577090 | MS.gene29008:CDS |
| GACGGCGGTGAGAGAGACAG+TGG | 0.575556 | 3.2:+66576458 | None:intergenic |
| CCGTTTAAGTGTGGCCGAGG+AGG | 0.578205 | 3.2:-66576752 | MS.gene29008:CDS |
| ACAAGCAAATGGTGCTTGGA+GGG | 0.578902 | 3.2:-66577559 | MS.gene29008:CDS |
| ATGCCAACATCATTGAGTCC+AGG | 0.582110 | 3.2:+66576964 | None:intergenic |
| AAGGACAAACTTGTTGGTGG+TGG | 0.582739 | 3.2:+66576361 | None:intergenic |
| CAATCTTGGAAGATCTGGCA+CGG | 0.584902 | 3.2:-66577665 | MS.gene29008:CDS |
| TTTAGGTCAATAACTCCCAA+AGG | 0.585916 | 3.2:+66577271 | None:intergenic |
| AAGAATGAGAAAGCAATGGT+AGG | 0.586182 | 3.2:+66576405 | None:intergenic |
| TAAAGTACATATCTTCTCCT+GGG | 0.587318 | 3.2:+66576842 | None:intergenic |
| GGGAAAATCATAGCAGTATG+TGG | 0.591011 | 3.2:+66577222 | None:intergenic |
| AATGACGTGACCTTCAAGGC+CGG | 0.597622 | 3.2:-66576874 | MS.gene29008:CDS |
| ATGGTAGGTGAAAGCTTAGA+CGG | 0.597893 | 3.2:+66576420 | None:intergenic |
| GTGGTCAGATATTAGCTGAT+CGG | 0.598793 | 3.2:+66576380 | None:intergenic |
| TTCAGAGAAAGAAGGTATCG+AGG | 0.600284 | 3.2:-66577016 | MS.gene29008:CDS |
| GGTGAAAGCTTAGACGGCGG+TGG | 0.600686 | 3.2:+66576426 | None:intergenic |
| TGGACTCAATGATGTTGGCA+TGG | 0.602326 | 3.2:-66576962 | MS.gene29008:CDS |
| GACGTTTGGCAGGAACAAGA+GGG | 0.603685 | 3.2:+66576989 | None:intergenic |
| GACAAGCAAATGGTGCTTGG+AGG | 0.604617 | 3.2:-66577560 | MS.gene29008:CDS |
| AATTCAGATATATCGAGAGA+TGG | 0.608587 | 3.2:-66577380 | MS.gene29008:intron |
| GAAACAAGCTTTAACCTCCT+CGG | 0.609487 | 3.2:+66576738 | None:intergenic |
| GTCCCTAATGGGAGTAATGG+AGG | 0.609491 | 3.2:-66577931 | None:intergenic |
| TCAGAGAAAGAAGGTATCGA+GGG | 0.609629 | 3.2:-66577015 | MS.gene29008:CDS |
| AATCTTGGAAGATCTGGCAC+GGG | 0.614557 | 3.2:-66577664 | MS.gene29008:CDS |
| CGTACACATTTCCATCAACC+AGG | 0.619128 | 3.2:+66576936 | None:intergenic |
| AAGCTTTGGATTACAGCATG+TGG | 0.619397 | 3.2:-66577582 | MS.gene29008:CDS |
| GAGAGACAGTGGGTGTCGGG+CGG | 0.633221 | 3.2:+66576469 | None:intergenic |
| TCAGATATATCGAGAGATGG+AGG | 0.635169 | 3.2:-66577377 | MS.gene29008:intron |
| AAGAAGGACAAACTTGTTGG+TGG | 0.637118 | 3.2:+66576358 | None:intergenic |
| GTAGGTGAAAGCTTAGACGG+CGG | 0.638964 | 3.2:+66576423 | None:intergenic |
| AAACATCCTTAGAAAAGACA+TGG | 0.642868 | 3.2:-66577107 | MS.gene29008:CDS |
| CGGCGGTGGTTGTAGAGAGA+CGG | 0.646870 | 3.2:+66576440 | None:intergenic |
| GTGCATTCTTACACCGACAG+AGG | 0.649945 | 3.2:+66577632 | None:intergenic |
| ACGGCGGTGAGAGAGACAGT+GGG | 0.655897 | 3.2:+66576459 | None:intergenic |
| GGAGAAGAATGAGAAAGCAA+TGG | 0.658916 | 3.2:+66576401 | None:intergenic |
| GTAGACCACGTTATGAGTGG+TGG | 0.663734 | 3.2:+66577351 | None:intergenic |
| TTCACTGGTACACCATGCAG+CGG | 0.668255 | 3.2:+66577307 | None:intergenic |
| TCAAGAAGAAACAACAGTTG+AGG | 0.683344 | 3.2:-66577688 | MS.gene29008:CDS |
| GGATGCCACCACTCATAACG+TGG | 0.705517 | 3.2:-66577356 | MS.gene29008:CDS |
| ACGTTTGGCAGGAACAAGAG+GGG | 0.722740 | 3.2:+66576990 | None:intergenic |
| CCAACATCATTGAGTCCAGG+AGG | 0.729473 | 3.2:+66576967 | None:intergenic |
| ACTGTAGACCACGTTATGAG+TGG | 0.733966 | 3.2:+66577348 | None:intergenic |
| CGGTGGTTGTAGAGAGACGG+CGG | 0.744170 | 3.2:+66576443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATAATTAAATAAAA+AGG | + | chr3.2:66577576-66577595 | None:intergenic | 0.0% |
| !! | AAAATAATTAAATAAAAAGG+AGG | + | chr3.2:66577573-66577592 | None:intergenic | 10.0% |
| !! | AAATAATTAAATAAAAAGGA+GGG | + | chr3.2:66577572-66577591 | None:intergenic | 10.0% |
| !! | ATAAATACCGTATAAATATA+CGG | + | chr3.2:66577681-66577700 | None:intergenic | 15.0% |
| !! | ATAAACTCCATTAATATAGA+AGG | + | chr3.2:66576801-66576820 | None:intergenic | 20.0% |
| !! | TCAATAAATATCACTTACAA+GGG | + | chr3.2:66577037-66577056 | None:intergenic | 20.0% |
| !! | TTCAATAAATATCACTTACA+AGG | + | chr3.2:66577038-66577057 | None:intergenic | 20.0% |
| !!! | ATTTATTGAATTTAGTTCAG+TGG | - | chr3.2:66577048-66577067 | MS.gene29008:CDS | 20.0% |
| ! | AAAAGGAAAAAAGAAGAAGA+AGG | + | chr3.2:66577715-66577734 | None:intergenic | 25.0% |
| ! | AATGAAAACTATCAACCTTT+GGG | - | chr3.2:66576949-66576968 | MS.gene29008:CDS | 25.0% |
| ! | AATTCAAATAGCCAAAGATA+AGG | - | chr3.2:66577168-66577187 | MS.gene29008:intron | 25.0% |
| ! | ACTTTCACCTTCTATATTAA+TGG | - | chr3.2:66576791-66576810 | MS.gene29008:CDS | 25.0% |
| ! | ATGATAAGTCAAGTCAAAAT+AGG | - | chr3.2:66577071-66577090 | MS.gene29008:CDS | 25.0% |
| ! | CAATAAATATCACTTACAAG+GGG | + | chr3.2:66577036-66577055 | None:intergenic | 25.0% |
| ! | TTATATTCTTAAAAGTCTCG+AGG | - | chr3.2:66576748-66576767 | MS.gene29008:CDS | 25.0% |
| AAACATCCTTAGAAAAGACA+TGG | - | chr3.2:66577128-66577147 | MS.gene29008:intron | 30.0% | |
| AATATAGAAGGTGAAAGTTG+TGG | + | chr3.2:66576789-66576808 | None:intergenic | 30.0% | |
| AATTCAGATATATCGAGAGA+TGG | - | chr3.2:66576855-66576874 | MS.gene29008:CDS | 30.0% | |
| AGTCACAATTACTTGGAATT+AGG | + | chr3.2:66576425-66576444 | None:intergenic | 30.0% | |
| CTGTTCACCGTATATTTATA+CGG | - | chr3.2:66577671-66577690 | MS.gene29008:CDS | 30.0% | |
| GAATGAAAACTATCAACCTT+TGG | - | chr3.2:66576948-66576967 | MS.gene29008:CDS | 30.0% | |
| GTAGTAAAGAAGATTTCATC+TGG | - | chr3.2:66576476-66576495 | MS.gene29008:CDS | 30.0% | |
| GTTGCTGCTAAGTAAATTAA+AGG | + | chr3.2:66577454-66577473 | None:intergenic | 30.0% | |
| TAAAGTACATATCTTCTCCT+GGG | + | chr3.2:66577396-66577415 | None:intergenic | 30.0% | |
| ! | AATTGACCATGTCTTTTCTA+AGG | + | chr3.2:66577137-66577156 | None:intergenic | 30.0% |
| ! | CTCAAATTTTCAGAGAAAGA+AGG | - | chr3.2:66577211-66577230 | MS.gene29008:intron | 30.0% |
| !! | ACAAATTAGGTGTTTTTGTG+TGG | - | chr3.2:66576624-66576643 | MS.gene29008:intron | 30.0% |
| !! | CAAATTAGGTGTTTTTGTGT+GGG | - | chr3.2:66576625-66576644 | MS.gene29008:intron | 30.0% |
| !! | TTATGAGAAATGCTTTTTGC+AGG | - | chr3.2:66577099-66577118 | MS.gene29008:CDS | 30.0% |
| !!! | ATTTGAGCTCTGTTACTTTT+AGG | + | chr3.2:66577198-66577217 | None:intergenic | 30.0% |
| !!! | TTCATCTGGTTCTTACATTT+TGG | - | chr3.2:66576490-66576509 | MS.gene29008:CDS | 30.0% |
| AAGAATGAGAAAGCAATGGT+AGG | + | chr3.2:66577833-66577852 | None:intergenic | 35.0% | |
| AGGAAAATTAACATCGAAGC+TGG | - | chr3.2:66576524-66576543 | MS.gene29008:CDS | 35.0% | |
| ATTTACTTAGCAGCAACTTC+TGG | - | chr3.2:66577457-66577476 | MS.gene29008:intron | 35.0% | |
| ATTTCGCAGTCACAATTACT+TGG | + | chr3.2:66576432-66576451 | None:intergenic | 35.0% | |
| CACGTAAGAGTGAAAGAAAA+AGG | + | chr3.2:66577732-66577751 | None:intergenic | 35.0% | |
| CTAAAGTACATATCTTCTCC+TGG | + | chr3.2:66577397-66577416 | None:intergenic | 35.0% | |
| GGTGTAAGAATGCACAAATT+AGG | - | chr3.2:66576611-66576630 | MS.gene29008:intron | 35.0% | |
| GTCATTGTAAACAATGTGAC+TGG | - | chr3.2:66576698-66576717 | MS.gene29008:intron | 35.0% | |
| TACAGTTCAGTCACTGTAAA+GGG | - | chr3.2:66576904-66576923 | MS.gene29008:CDS | 35.0% | |
| TCAAGAAGAAACAACAGTTG+AGG | - | chr3.2:66576547-66576566 | MS.gene29008:intron | 35.0% | |
| TTTAGGTCAATAACTCCCAA+AGG | + | chr3.2:66576967-66576986 | None:intergenic | 35.0% | |
| ! | ACATTTTGGATGTTGATACC+AGG | - | chr3.2:66576504-66576523 | MS.gene29008:CDS | 35.0% |
| ! | AGCTTCGATGTTAATTTTCC+TGG | + | chr3.2:66576525-66576544 | None:intergenic | 35.0% |
| ! | GTTAAAGCTTGTTTCAGAGT+CGG | - | chr3.2:66577505-66577524 | MS.gene29008:intron | 35.0% |
| !! | TTTTAGGAGGTCCTTATCTT+TGG | + | chr3.2:66577182-66577201 | None:intergenic | 35.0% |
| !!! | GATCATCTACTTTTTGCTTG+CGG | + | chr3.2:66576397-66576416 | None:intergenic | 35.0% |
| !!! | GGTTGATAGTTTTCATTCAC+TGG | + | chr3.2:66576946-66576965 | None:intergenic | 35.0% |
| AACAACAGTTGAGGCAATCT+TGG | - | chr3.2:66576556-66576575 | MS.gene29008:intron | 40.0% | |
| ACATGGTCAATTCAACAGAC+AGG | - | chr3.2:66577145-66577164 | MS.gene29008:intron | 40.0% | |
| ACCAATATTGTCCTTCCAGA+CGG | + | chr3.2:66577334-66577353 | None:intergenic | 40.0% | |
| ATGGTAGGTGAAAGCTTAGA+CGG | + | chr3.2:66577818-66577837 | None:intergenic | 40.0% | |
| CGTTACAAAAACCATGCTCA+GGG | + | chr3.2:66577549-66577568 | None:intergenic | 40.0% | |
| CTACAGTTCAGTCACTGTAA+AGG | - | chr3.2:66576903-66576922 | MS.gene29008:CDS | 40.0% | |
| GGAAAGAAGGACAAACTTGT+TGG | + | chr3.2:66577883-66577902 | None:intergenic | 40.0% | |
| GGAGAAGAATGAGAAAGCAA+TGG | + | chr3.2:66577837-66577856 | None:intergenic | 40.0% | |
| GGGAAAATCATAGCAGTATG+TGG | + | chr3.2:66577016-66577035 | None:intergenic | 40.0% | |
| GTGGTCAGATATTAGCTGAT+CGG | + | chr3.2:66577858-66577877 | None:intergenic | 40.0% | |
| TCAGATATATCGAGAGATGG+AGG | - | chr3.2:66576858-66576877 | MS.gene29008:CDS | 40.0% | |
| TTCAAATGACGTGACCTTCA+AGG | - | chr3.2:66577357-66577376 | MS.gene29008:CDS | 40.0% | |
| TTTGCTTGCGGATGATATAG+AGG | + | chr3.2:66576385-66576404 | None:intergenic | 40.0% | |
| ! | GAAACAAGCTTTAACCTCCT+CGG | + | chr3.2:66577500-66577519 | None:intergenic | 40.0% |
| ! | TTCTTGCTGCAAGACGTTTT+AGG | + | chr3.2:66576984-66577003 | None:intergenic | 40.0% |
| !! | AAGAAGGACAAACTTGTTGG+TGG | + | chr3.2:66577880-66577899 | None:intergenic | 40.0% |
| !! | AAGCTTTGGATTACAGCATG+TGG | - | chr3.2:66576653-66576672 | MS.gene29008:intron | 40.0% |
| !! | TCAGAGAAAGAAGGTATCGA+GGG | - | chr3.2:66577220-66577239 | MS.gene29008:CDS | 40.0% |
| !! | TTCAGAGAAAGAAGGTATCG+AGG | - | chr3.2:66577219-66577238 | MS.gene29008:CDS | 40.0% |
| !!! | TGAGCTCTGTTACTTTTAGG+AGG | + | chr3.2:66577195-66577214 | None:intergenic | 40.0% |
| AATCTTGGAAGATCTGGCAC+GGG | - | chr3.2:66576571-66576590 | MS.gene29008:intron | 45.0% | |
| ACAAGCAAATGGTGCTTGGA+GGG | - | chr3.2:66576676-66576695 | MS.gene29008:intron | 45.0% | |
| ACAGCATGTGGACAAGCAAA+TGG | - | chr3.2:66576665-66576684 | MS.gene29008:intron | 45.0% | |
| ACTGTAGACCACGTTATGAG+TGG | + | chr3.2:66576890-66576909 | None:intergenic | 45.0% | |
| AGAAGGTGAAAGTTGTGGCA+TGG | + | chr3.2:66576784-66576803 | None:intergenic | 45.0% | |
| ATGATGTTGGCATGGTATCC+TGG | - | chr3.2:66577281-66577300 | MS.gene29008:CDS | 45.0% | |
| ATGCCAACATCATTGAGTCC+AGG | + | chr3.2:66577274-66577293 | None:intergenic | 45.0% | |
| CAATCTTGGAAGATCTGGCA+CGG | - | chr3.2:66576570-66576589 | MS.gene29008:intron | 45.0% | |
| CCAATATTGTCCTTCCAGAC+GGG | + | chr3.2:66577333-66577352 | None:intergenic | 45.0% | |
| CGTACACATTTCCATCAACC+AGG | + | chr3.2:66577302-66577321 | None:intergenic | 45.0% | |
| CGTTTGAAGAAGCGGAAAGA+AGG | + | chr3.2:66577896-66577915 | None:intergenic | 45.0% | |
| GCGTTACAAAAACCATGCTC+AGG | + | chr3.2:66577550-66577569 | None:intergenic | 45.0% | |
| TGAGGCAATCTTGGAAGATC+TGG | - | chr3.2:66576565-66576584 | MS.gene29008:intron | 45.0% | |
| TGGACTCAATGATGTTGGCA+TGG | - | chr3.2:66577273-66577292 | MS.gene29008:CDS | 45.0% | |
| TTCTTACACCGACAGAGGAA+TGG | + | chr3.2:66576601-66576620 | None:intergenic | 45.0% | |
| TTGCAGGTCGTTTGAAGAAG+CGG | + | chr3.2:66577904-66577923 | None:intergenic | 45.0% | |
| TTGTGTGGGAAGTCAAGCTT+TGG | - | chr3.2:66576639-66576658 | MS.gene29008:intron | 45.0% | |
| ! | AAGCTTGTTTCAGAGTCGGT+TGG | - | chr3.2:66577509-66577528 | MS.gene29008:intron | 45.0% |
| !! | AAGGACAAACTTGTTGGTGG+TGG | + | chr3.2:66577877-66577896 | None:intergenic | 45.0% |
| AATGACGTGACCTTCAAGGC+CGG | - | chr3.2:66577361-66577380 | MS.gene29008:CDS | 50.0% | |
| ACGTTTGGCAGGAACAAGAG+GGG | + | chr3.2:66577248-66577267 | None:intergenic | 50.0% | |
| AGGTGAAAGTTGTGGCATGG+AGG | + | chr3.2:66576781-66576800 | None:intergenic | 50.0% | |
| ATTGAGTCCAGGAGGACGTT+TGG | + | chr3.2:66577263-66577282 | None:intergenic | 50.0% | |
| CCAACATCATTGAGTCCAGG+AGG | + | chr3.2:66577271-66577290 | None:intergenic | 50.0% | |
| CCCGTCTGGAAGGACAATAT+TGG | - | chr3.2:66577330-66577349 | MS.gene29008:CDS | 50.0% | |
| CCTCCTGGACTCAATGATGT+TGG | - | chr3.2:66577268-66577287 | MS.gene29008:CDS | 50.0% | |
| CGGGAAATCCATTCCTCTGT+CGG | - | chr3.2:66576590-66576609 | MS.gene29008:intron | 50.0% | |
| GACAAGCAAATGGTGCTTGG+AGG | - | chr3.2:66576675-66576694 | MS.gene29008:intron | 50.0% | |
| GACGTTTGGCAGGAACAAGA+GGG | + | chr3.2:66577249-66577268 | None:intergenic | 50.0% | |
| GAGGAATCTAACCCTGAGCA+TGG | - | chr3.2:66577535-66577554 | MS.gene29008:CDS | 50.0% | |
| GTAGACCACGTTATGAGTGG+TGG | + | chr3.2:66576887-66576906 | None:intergenic | 50.0% | |
| GTAGGTGAAAGCTTAGACGG+CGG | + | chr3.2:66577815-66577834 | None:intergenic | 50.0% | |
| GTGATCGGAATCTGAGTTGC+AGG | + | chr3.2:66577920-66577939 | None:intergenic | 50.0% | |
| GTGCATTCTTACACCGACAG+AGG | + | chr3.2:66576606-66576625 | None:intergenic | 50.0% | |
| GTGGACAAGCAAATGGTGCT+TGG | - | chr3.2:66576672-66576691 | MS.gene29008:intron | 50.0% | |
| TGGCATGGTATCCTGGTTGA+TGG | - | chr3.2:66577288-66577307 | MS.gene29008:CDS | 50.0% | |
| TTCACTGGTACACCATGCAG+CGG | + | chr3.2:66576931-66576950 | None:intergenic | 50.0% | |
| TTCTCCTGGGCCAAAAGAAC+CGG | + | chr3.2:66577383-66577402 | None:intergenic | 50.0% | |
| TTCTGGTGCCCGTTTAAGTG+TGG | - | chr3.2:66577474-66577493 | MS.gene29008:intron | 50.0% | |
| !! | ACCTTCAAGGCCGGTTCTTT+TGG | - | chr3.2:66577370-66577389 | MS.gene29008:CDS | 50.0% |
| !! | TTTCAGAGTCGGTTGGTCTG+AGG | - | chr3.2:66577516-66577535 | MS.gene29008:intron | 50.0% |
| ACTGTAAAGGGTCCGCTGCA+TGG | - | chr3.2:66576916-66576935 | MS.gene29008:CDS | 55.0% | |
| CCTCCTCGGCCACACTTAAA+CGG | + | chr3.2:66577486-66577505 | None:intergenic | 55.0% | |
| CTCCTCGGCCACACTTAAAC+GGG | + | chr3.2:66577485-66577504 | None:intergenic | 55.0% | |
| GCCAAAAGAACCGGCCTTGA+AGG | + | chr3.2:66577374-66577393 | None:intergenic | 55.0% | |
| GGACGTTTGGCAGGAACAAG+AGG | + | chr3.2:66577250-66577269 | None:intergenic | 55.0% | |
| GGATGCCACCACTCATAACG+TGG | - | chr3.2:66576879-66576898 | MS.gene29008:CDS | 55.0% | |
| GTCCTTCCAGACGGGAATTC+AGG | + | chr3.2:66577325-66577344 | None:intergenic | 55.0% | |
| GTGAGAGAGACAGTGGGTGT+CGG | + | chr3.2:66577773-66577792 | None:intergenic | 55.0% | |
| TGAGAGAGACAGTGGGTGTC+GGG | + | chr3.2:66577772-66577791 | None:intergenic | 55.0% | |
| TGTACGCCTGAATTCCCGTC+TGG | - | chr3.2:66577316-66577335 | MS.gene29008:CDS | 55.0% | |
| ACGGCGGTGAGAGAGACAGT+GGG | + | chr3.2:66577779-66577798 | None:intergenic | 60.0% | |
| AGTCCAGGAGGACGTTTGGC+AGG | + | chr3.2:66577259-66577278 | None:intergenic | 60.0% | |
| CCGTTTAAGTGTGGCCGAGG+AGG | - | chr3.2:66577483-66577502 | MS.gene29008:intron | 60.0% | |
| CGCCTGAATTCCCGTCTGGA+AGG | - | chr3.2:66577320-66577339 | MS.gene29008:CDS | 60.0% | |
| CGGCGGTGGTTGTAGAGAGA+CGG | + | chr3.2:66577798-66577817 | None:intergenic | 60.0% | |
| CGGTGGTTGTAGAGAGACGG+CGG | + | chr3.2:66577795-66577814 | None:intergenic | 60.0% | |
| GGTGAAAGCTTAGACGGCGG+TGG | + | chr3.2:66577812-66577831 | None:intergenic | 60.0% | |
| GTTCCTGCCAAACGTCCTCC+TGG | - | chr3.2:66577253-66577272 | MS.gene29008:CDS | 60.0% | |
| TGCCCGTTTAAGTGTGGCCG+AGG | - | chr3.2:66577480-66577499 | MS.gene29008:intron | 60.0% | |
| !! | AAGGCCGGTTCTTTTGGCCC+AGG | - | chr3.2:66577376-66577395 | MS.gene29008:CDS | 60.0% |
| GACGGCGGTGAGAGAGACAG+TGG | + | chr3.2:66577780-66577799 | None:intergenic | 65.0% | |
| !! | GAGAGACAGTGGGTGTCGGG+CGG | + | chr3.2:66577769-66577788 | None:intergenic | 65.0% |
| !! | AGACAGTGGGTGTCGGGCGG+TGG | + | chr3.2:66577766-66577785 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 66576311 | 66577946 | 66576311 | ID=MS.gene29008 |
| chr3.2 | mRNA | 66576311 | 66577946 | 66576311 | ID=MS.gene29008.t1;Parent=MS.gene29008 |
| chr3.2 | exon | 66577825 | 66577946 | 66577825 | ID=MS.gene29008.t1.exon1;Parent=MS.gene29008.t1 |
| chr3.2 | CDS | 66577825 | 66577946 | 66577825 | ID=cds.MS.gene29008.t1;Parent=MS.gene29008.t1 |
| chr3.2 | exon | 66577518 | 66577731 | 66577518 | ID=MS.gene29008.t1.exon2;Parent=MS.gene29008.t1 |
| chr3.2 | CDS | 66577518 | 66577731 | 66577518 | ID=cds.MS.gene29008.t1;Parent=MS.gene29008.t1 |
| chr3.2 | exon | 66577219 | 66577395 | 66577219 | ID=MS.gene29008.t1.exon3;Parent=MS.gene29008.t1 |
| chr3.2 | CDS | 66577219 | 66577395 | 66577219 | ID=cds.MS.gene29008.t1;Parent=MS.gene29008.t1 |
| chr3.2 | exon | 66576731 | 66577136 | 66576731 | ID=MS.gene29008.t1.exon4;Parent=MS.gene29008.t1 |
| chr3.2 | CDS | 66576731 | 66577136 | 66576731 | ID=cds.MS.gene29008.t1;Parent=MS.gene29008.t1 |
| chr3.2 | exon | 66576311 | 66576549 | 66576311 | ID=MS.gene29008.t1.exon5;Parent=MS.gene29008.t1 |
| chr3.2 | CDS | 66576311 | 66576549 | 66576311 | ID=cds.MS.gene29008.t1;Parent=MS.gene29008.t1 |
| Gene Sequence |
| Protein sequence |
