Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29297.t1 | KAB1202362.1 | 63.2 | 687 | 154 | 4 | 16 | 627 | 15 | 677 | 1.30E-230 | 809.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29297.t1 | Q3EBC2 | 56.6 | 316 | 131 | 3 | 317 | 627 | 82 | 396 | 1.0e-92 | 342.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29297.t1 | A0A1R3GWE7 | 61.6 | 604 | 163 | 5 | 10 | 609 | 10 | 548 | 3.0e-194 | 688.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049356 | MS.gene29297 | 0.809272 | 2.05E-50 | -1.69E-46 |
MS.gene049369 | MS.gene29297 | 0.810619 | 1.05E-50 | -1.69E-46 |
MS.gene053103 | MS.gene29297 | 0.805442 | 1.33E-49 | -1.69E-46 |
MS.gene053449 | MS.gene29297 | 0.831997 | 1.22E-55 | -1.69E-46 |
MS.gene053912 | MS.gene29297 | 0.839865 | 1.23E-57 | -1.69E-46 |
MS.gene053916 | MS.gene29297 | 0.818569 | 1.83E-52 | -1.69E-46 |
MS.gene05505 | MS.gene29297 | 0.811242 | 7.72E-51 | -1.69E-46 |
MS.gene056511 | MS.gene29297 | 0.817039 | 4.05E-52 | -1.69E-46 |
MS.gene056719 | MS.gene29297 | 0.816363 | 5.75E-52 | -1.69E-46 |
MS.gene057199 | MS.gene29297 | 0.800022 | 1.75E-48 | -1.69E-46 |
MS.gene05735 | MS.gene29297 | 0.800474 | 1.42E-48 | -1.69E-46 |
MS.gene058459 | MS.gene29297 | 0.801925 | 7.15E-49 | -1.69E-46 |
MS.gene058928 | MS.gene29297 | 0.817808 | 2.72E-52 | -1.69E-46 |
MS.gene059674 | MS.gene29297 | 0.805904 | 1.07E-49 | -1.69E-46 |
MS.gene059807 | MS.gene29297 | 0.828826 | 7.24E-55 | -1.69E-46 |
MS.gene060818 | MS.gene29297 | 0.82508 | 5.70E-54 | -1.69E-46 |
MS.gene061041 | MS.gene29297 | 0.812694 | 3.73E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29297.t1 | MTR_7g114080 | 98.077 | 312 | 6 | 0 | 317 | 628 | 82 | 393 | 0.0 | 647 |
MS.gene29297.t1 | MTR_7g114070 | 97.799 | 318 | 6 | 1 | 1 | 317 | 7 | 324 | 0.0 | 628 |
MS.gene29297.t1 | MTR_7g114080 | 95.192 | 312 | 6 | 1 | 317 | 628 | 82 | 384 | 0.0 | 621 |
MS.gene29297.t1 | MTR_7g114080 | 99.095 | 221 | 2 | 0 | 317 | 537 | 82 | 302 | 4.03e-160 | 462 |
MS.gene29297.t1 | MTR_7g114070 | 97.817 | 229 | 4 | 1 | 1 | 228 | 7 | 235 | 4.53e-157 | 451 |
MS.gene29297.t1 | MTR_7g114070 | 97.817 | 229 | 4 | 1 | 1 | 228 | 7 | 235 | 7.63e-157 | 451 |
MS.gene29297.t1 | MTR_7g114070 | 93.776 | 241 | 14 | 1 | 1 | 240 | 7 | 247 | 1.11e-155 | 451 |
MS.gene29297.t1 | MTR_7g114080 | 99.438 | 178 | 1 | 0 | 317 | 494 | 82 | 259 | 3.17e-126 | 375 |
MS.gene29297.t1 | MTR_7g088350 | 34.694 | 147 | 70 | 3 | 395 | 541 | 163 | 283 | 2.12e-21 | 98.2 |
MS.gene29297.t1 | MTR_6g033315 | 34.014 | 147 | 77 | 2 | 395 | 541 | 150 | 276 | 9.51e-21 | 95.9 |
MS.gene29297.t1 | MTR_3g098840 | 27.692 | 195 | 114 | 3 | 395 | 589 | 151 | 318 | 4.42e-20 | 93.6 |
MS.gene29297.t1 | MTR_6g038020 | 29.767 | 215 | 103 | 5 | 353 | 541 | 71 | 263 | 8.45e-20 | 92.8 |
MS.gene29297.t1 | MTR_6g038020 | 29.767 | 215 | 103 | 5 | 353 | 541 | 74 | 266 | 1.00e-19 | 92.4 |
MS.gene29297.t1 | MTR_1g112830 | 39.167 | 120 | 66 | 2 | 355 | 471 | 418 | 533 | 2.03e-19 | 92.8 |
MS.gene29297.t1 | MTR_4g116160 | 32.292 | 192 | 111 | 4 | 272 | 445 | 236 | 426 | 3.27e-19 | 91.7 |
MS.gene29297.t1 | MTR_4g116160 | 30.964 | 197 | 107 | 6 | 272 | 445 | 63 | 253 | 3.27e-19 | 91.3 |
MS.gene29297.t1 | MTR_4g116160 | 30.964 | 197 | 107 | 6 | 272 | 445 | 236 | 426 | 4.27e-19 | 92.0 |
MS.gene29297.t1 | MTR_1g098390 | 33.333 | 147 | 79 | 2 | 395 | 541 | 136 | 263 | 7.99e-19 | 89.7 |
MS.gene29297.t1 | MTR_4g092760 | 32.704 | 159 | 94 | 3 | 299 | 444 | 165 | 323 | 2.26e-18 | 88.6 |
MS.gene29297.t1 | MTR_4g092760 | 33.125 | 160 | 93 | 4 | 299 | 444 | 253 | 412 | 4.64e-18 | 88.2 |
MS.gene29297.t1 | MTR_2g066060 | 29.213 | 267 | 175 | 6 | 53 | 317 | 123 | 377 | 1.76e-17 | 85.5 |
MS.gene29297.t1 | MTR_7g083480 | 33.103 | 145 | 77 | 2 | 397 | 541 | 152 | 276 | 2.14e-17 | 85.5 |
MS.gene29297.t1 | MTR_7g088360 | 31.757 | 148 | 75 | 2 | 395 | 541 | 162 | 284 | 2.27e-16 | 82.0 |
MS.gene29297.t1 | MTR_4g021795 | 28.571 | 175 | 100 | 4 | 301 | 458 | 3 | 169 | 2.34e-16 | 80.5 |
MS.gene29297.t1 | MTR_1g094610 | 35.659 | 129 | 73 | 5 | 355 | 475 | 55 | 181 | 4.52e-16 | 79.3 |
MS.gene29297.t1 | MTR_5g023230 | 38.554 | 83 | 43 | 2 | 397 | 479 | 170 | 244 | 1.29e-13 | 71.6 |
MS.gene29297.t1 | MTR_5g023230 | 31.429 | 140 | 69 | 3 | 397 | 536 | 150 | 262 | 3.65e-13 | 71.2 |
MS.gene29297.t1 | MTR_5g023230 | 31.429 | 140 | 69 | 3 | 397 | 536 | 170 | 282 | 4.75e-13 | 71.2 |
MS.gene29297.t1 | MTR_5g042870 | 59.091 | 44 | 18 | 0 | 397 | 440 | 181 | 224 | 1.49e-12 | 70.9 |
MS.gene29297.t1 | MTR_4g082560 | 50.000 | 54 | 27 | 0 | 397 | 450 | 181 | 234 | 1.58e-12 | 70.9 |
MS.gene29297.t1 | MTR_1g085980 | 29.412 | 204 | 113 | 8 | 362 | 553 | 114 | 298 | 2.23e-12 | 70.1 |
MS.gene29297.t1 | MTR_7g118050 | 33.333 | 93 | 46 | 2 | 362 | 438 | 76 | 168 | 2.83e-12 | 67.0 |
MS.gene29297.t1 | MTR_7g118050 | 33.333 | 93 | 46 | 2 | 362 | 438 | 76 | 168 | 4.19e-12 | 67.8 |
MS.gene29297.t1 | MTR_4g023760 | 25.758 | 264 | 137 | 10 | 313 | 550 | 22 | 252 | 1.11e-11 | 66.6 |
MS.gene29297.t1 | MTR_4g074600 | 30.233 | 129 | 81 | 3 | 397 | 518 | 76 | 202 | 3.44e-11 | 64.7 |
MS.gene29297.t1 | MTR_4g074600 | 31.008 | 129 | 80 | 3 | 397 | 518 | 172 | 298 | 7.59e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29297.t1 | AT5G27290 | 76.610 | 295 | 68 | 1 | 24 | 317 | 31 | 325 | 1.60e-163 | 471 |
MS.gene29297.t1 | AT3G04970 | 63.051 | 295 | 100 | 3 | 326 | 614 | 4 | 295 | 1.84e-135 | 399 |
MS.gene29297.t1 | AT3G04970 | 62.171 | 304 | 106 | 3 | 317 | 614 | 82 | 382 | 3.11e-135 | 401 |
MS.gene29297.t1 | AT5G27290 | 75.862 | 232 | 55 | 1 | 24 | 254 | 31 | 262 | 3.06e-125 | 370 |
MS.gene29297.t1 | AT3G04970 | 75.000 | 220 | 55 | 0 | 317 | 536 | 82 | 301 | 5.38e-124 | 369 |
MS.gene29297.t1 | AT1G54680 | 31.596 | 307 | 153 | 4 | 20 | 317 | 9 | 267 | 4.89e-40 | 148 |
MS.gene29297.t1 | AT1G54680 | 31.310 | 313 | 152 | 4 | 20 | 317 | 9 | 273 | 1.83e-39 | 147 |
MS.gene29297.t1 | AT1G54680 | 31.773 | 299 | 141 | 4 | 34 | 317 | 12 | 262 | 5.29e-39 | 145 |
MS.gene29297.t1 | AT1G54680 | 41.447 | 152 | 79 | 2 | 175 | 317 | 51 | 201 | 2.77e-34 | 130 |
MS.gene29297.t1 | AT5G50020 | 28.897 | 263 | 134 | 6 | 353 | 591 | 72 | 305 | 7.09e-22 | 99.0 |
MS.gene29297.t1 | AT5G50020 | 28.897 | 263 | 134 | 6 | 353 | 591 | 102 | 335 | 8.63e-22 | 99.0 |
MS.gene29297.t1 | AT5G41060 | 29.703 | 202 | 102 | 4 | 359 | 540 | 24 | 205 | 8.73e-21 | 94.7 |
MS.gene29297.t1 | AT5G41060 | 29.703 | 202 | 102 | 4 | 359 | 540 | 24 | 205 | 8.73e-21 | 94.7 |
MS.gene29297.t1 | AT3G26935 | 30.244 | 205 | 101 | 4 | 359 | 541 | 91 | 275 | 1.39e-20 | 95.5 |
MS.gene29297.t1 | AT5G41060 | 29.703 | 202 | 102 | 4 | 359 | 540 | 91 | 272 | 1.90e-20 | 94.7 |
MS.gene29297.t1 | AT5G41060 | 29.703 | 202 | 102 | 4 | 359 | 540 | 76 | 257 | 2.12e-20 | 94.4 |
MS.gene29297.t1 | AT2G14255 | 42.857 | 98 | 46 | 2 | 358 | 445 | 316 | 413 | 5.11e-20 | 94.4 |
MS.gene29297.t1 | AT4G24630 | 34.694 | 147 | 76 | 2 | 395 | 541 | 136 | 262 | 1.18e-19 | 92.0 |
MS.gene29297.t1 | AT1G56180 | 30.233 | 215 | 136 | 5 | 110 | 321 | 175 | 378 | 2.86e-19 | 90.9 |
MS.gene29297.t1 | AT3G48760 | 30.180 | 222 | 108 | 5 | 347 | 541 | 83 | 284 | 3.73e-19 | 91.3 |
MS.gene29297.t1 | AT3G56930 | 34.014 | 147 | 77 | 2 | 395 | 541 | 146 | 272 | 1.60e-18 | 89.4 |
MS.gene29297.t1 | AT5G50020 | 27.547 | 265 | 132 | 7 | 353 | 593 | 72 | 300 | 1.29e-17 | 85.9 |
MS.gene29297.t1 | AT3G56920 | 34.694 | 147 | 72 | 3 | 395 | 541 | 142 | 264 | 2.06e-17 | 84.3 |
MS.gene29297.t1 | AT5G05070 | 31.757 | 148 | 75 | 2 | 395 | 541 | 171 | 293 | 2.34e-17 | 85.1 |
MS.gene29297.t1 | AT2G40990 | 33.333 | 147 | 75 | 3 | 395 | 541 | 160 | 283 | 8.29e-17 | 83.6 |
MS.gene29297.t1 | AT5G20350 | 30.233 | 172 | 104 | 4 | 280 | 436 | 242 | 412 | 9.00e-16 | 81.3 |
MS.gene29297.t1 | AT3G09320 | 34.028 | 144 | 69 | 4 | 395 | 536 | 97 | 216 | 4.70e-14 | 73.6 |
MS.gene29297.t1 | AT1G69420 | 50.000 | 68 | 32 | 2 | 397 | 462 | 165 | 232 | 4.76e-14 | 75.9 |
MS.gene29297.t1 | AT1G69420 | 50.000 | 68 | 32 | 2 | 397 | 462 | 165 | 232 | 4.76e-14 | 75.9 |
MS.gene29297.t1 | AT5G04270 | 33.333 | 90 | 60 | 0 | 369 | 458 | 66 | 155 | 3.46e-13 | 70.9 |
MS.gene29297.t1 | AT4G00840 | 38.824 | 85 | 43 | 3 | 362 | 438 | 71 | 154 | 4.33e-13 | 69.3 |
MS.gene29297.t1 | AT4G00840 | 34.247 | 146 | 72 | 7 | 313 | 438 | 13 | 154 | 1.04e-12 | 69.7 |
MS.gene29297.t1 | AT3G51390 | 40.984 | 61 | 36 | 0 | 397 | 457 | 159 | 219 | 1.24e-11 | 67.0 |
MS.gene29297.t1 | AT3G51390 | 40.984 | 61 | 36 | 0 | 397 | 457 | 164 | 224 | 1.24e-11 | 67.0 |
MS.gene29297.t1 | AT4G01730 | 27.778 | 180 | 101 | 7 | 362 | 527 | 116 | 280 | 1.56e-11 | 67.4 |
MS.gene29297.t1 | AT4G15080 | 28.743 | 167 | 93 | 6 | 397 | 558 | 176 | 321 | 5.82e-11 | 66.2 |
MS.gene29297.t1 | AT4G15080 | 28.743 | 167 | 93 | 6 | 397 | 558 | 176 | 321 | 5.82e-11 | 66.2 |
MS.gene29297.t1 | AT3G60800 | 25.926 | 270 | 145 | 9 | 313 | 554 | 22 | 264 | 9.59e-11 | 63.9 |
Find 148 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGAATTGAAAATTCATTT+TGG | 0.153553 | 7.2:-3333589 | MS.gene29297:CDS |
AAGGTTTCTTGCACAATATT+TGG | 0.154742 | 7.2:-3332622 | MS.gene29297:CDS |
CGTAACTTTGCAGTTTATTA+TGG | 0.166654 | 7.2:-3333608 | MS.gene29297:intron |
TATTATCATGTAGTGGTTAT+TGG | 0.181847 | 7.2:-3333459 | MS.gene29297:intron |
AAGAATAATGTTTACAATAA+AGG | 0.202965 | 7.2:-3332641 | MS.gene29297:CDS |
AGGATATACACTTTCTAGTT+TGG | 0.265974 | 7.2:-3340164 | MS.gene29297:CDS |
GTTGCTGCTTGGAATGTCTT+TGG | 0.278212 | 7.2:-3341823 | MS.gene29297:CDS |
GCTTGCCGTGGCCATGTCTC+TGG | 0.290443 | 7.2:-3339305 | MS.gene29297:CDS |
ATTATCATGTAGTGGTTATT+GGG | 0.299459 | 7.2:-3333458 | MS.gene29297:intron |
TTGACCAGCTTTACTGATCC+TGG | 0.302736 | 7.2:-3335925 | MS.gene29297:CDS |
CTAGAAAGTGTATATCCTTT+AGG | 0.318332 | 7.2:+3340169 | None:intergenic |
AAAGTTGTCTATATTCTAAC+AGG | 0.323299 | 7.2:-3333708 | MS.gene29297:intron |
GTTTCTGTGGACTCTGGATT+TGG | 0.325214 | 7.2:-3341758 | MS.gene29297:intron |
TTGGACGAATTGAAGCTAAA+TGG | 0.341057 | 7.2:-3341934 | MS.gene29297:CDS |
ATCCTCACCCTTGCAAGTTT+AGG | 0.343038 | 7.2:+3342278 | None:intergenic |
TGCACCGAGTATCTTATATA+TGG | 0.347416 | 7.2:-3339562 | MS.gene29297:CDS |
TATGTAAAAGATTTGTTGTT+GGG | 0.350037 | 7.2:+3341795 | None:intergenic |
AGGTTTCTTGCACAATATTT+GGG | 0.355157 | 7.2:-3332621 | MS.gene29297:CDS |
AGCTGCTCTTGCACTTGTTA+AGG | 0.362242 | 7.2:-3342174 | MS.gene29297:CDS |
AAGAAGAATCTGAGTGTTGT+AGG | 0.368816 | 7.2:+3333433 | None:intergenic |
TCAGTCAGAAATACCACAAC+AGG | 0.372976 | 7.2:-3340336 | MS.gene29297:CDS |
CCCAACGGGCTTCAGTGTTT+CGG | 0.378346 | 7.2:-3342137 | MS.gene29297:CDS |
TAAATAGTATCCAGGGATAT+AGG | 0.387946 | 7.2:+3336097 | None:intergenic |
CATTTCCTTCTATGTATGTA+TGG | 0.394359 | 7.2:-3333777 | MS.gene29297:CDS |
TCAAGCTGGTACAGCCTTTG+TGG | 0.396174 | 7.2:-3340110 | MS.gene29297:CDS |
TACTGATCCTGGGACAATAA+AGG | 0.405997 | 7.2:-3335914 | MS.gene29297:CDS |
TGGTGGAGGTCTTGGTAGCT+TGG | 0.407245 | 7.2:-3340383 | MS.gene29297:CDS |
AGATTCTTTGCTCAACGGAC+TGG | 0.409538 | 7.2:-3339419 | MS.gene29297:CDS |
GAGAAACACTCGATATTTCA+TGG | 0.410575 | 7.2:-3335528 | MS.gene29297:CDS |
GCGATTGTTGGGATGCTGTT+AGG | 0.412018 | 7.2:-3333398 | MS.gene29297:CDS |
CATGTAGTCTTGCCACTTGA+AGG | 0.417053 | 7.2:+3332814 | None:intergenic |
ATTGCTGTTTCTGTGGACTC+TGG | 0.428658 | 7.2:-3341764 | MS.gene29297:CDS |
TTCTCAGCCTTTATTGTCCC+AGG | 0.429320 | 7.2:+3335907 | None:intergenic |
GTGTTTCGGCGCGGCTAGAC+AGG | 0.430642 | 7.2:-3342123 | MS.gene29297:intron |
TCCAATGTATAAAGCCTTTG+AGG | 0.434942 | 7.2:+3341952 | None:intergenic |
AGCTTCTTCGCAGCTGCTGT+TGG | 0.443853 | 7.2:-3335964 | MS.gene29297:CDS |
GATTCTTTGCTCAACGGACT+GGG | 0.445879 | 7.2:-3339418 | MS.gene29297:CDS |
TGGTGTCATGCAGGTTAACT+CGG | 0.450519 | 7.2:-3339758 | MS.gene29297:intron |
TCTTCCTTTGCCTATATCCC+TGG | 0.452747 | 7.2:-3336107 | MS.gene29297:CDS |
CCGAAACACTGAAGCCCGTT+GGG | 0.454050 | 7.2:+3342137 | None:intergenic |
ATGCTGTTAGGCGGATTCTT+CGG | 0.458907 | 7.2:-3333386 | MS.gene29297:CDS |
CTTCAAGTGGCAAGACTACA+TGG | 0.460027 | 7.2:-3332813 | MS.gene29297:CDS |
TTTAGCTCCCCATGTTGTAC+AGG | 0.468240 | 7.2:-3333564 | MS.gene29297:intron |
TTAATTATGCAGCATGAAGC+TGG | 0.468510 | 7.2:-3340226 | MS.gene29297:intron |
TAGTTTGGATGGTCTGATGA+AGG | 0.468887 | 7.2:-3340149 | MS.gene29297:CDS |
AATCGTTGTCAAGCAACAAA+TGG | 0.469650 | 7.2:-3332709 | MS.gene29297:CDS |
TCTCCTGTGGATACAACTCT+TGG | 0.469950 | 7.2:-3341889 | MS.gene29297:CDS |
TTGTTGGAGGGGTTGCTGCT+TGG | 0.473306 | 7.2:-3341834 | MS.gene29297:CDS |
AGCTTGGTTGTTGATACAAT+TGG | 0.475036 | 7.2:-3340367 | MS.gene29297:CDS |
TTGATTGCTGCTATTGTTGG+AGG | 0.477423 | 7.2:-3341847 | MS.gene29297:CDS |
TTGTTGATTGCTGCTATTGT+TGG | 0.478556 | 7.2:-3341850 | MS.gene29297:CDS |
ACTTGCAGAATAATTGCATA+GGG | 0.478657 | 7.2:-3335553 | MS.gene29297:intron |
ATTTACAAGGCAAACCCAAC+GGG | 0.479735 | 7.2:-3342151 | MS.gene29297:CDS |
TATACACTTTCTAGTTTGGA+TGG | 0.483671 | 7.2:-3340160 | MS.gene29297:CDS |
CTGTTCCATACATACATAGA+AGG | 0.484200 | 7.2:+3333772 | None:intergenic |
ATATGTAAAAGATTTGTTGT+TGG | 0.485032 | 7.2:+3341794 | None:intergenic |
GTAGACAAGGAGCTAACAAA+AGG | 0.485325 | 7.2:-3342206 | MS.gene29297:CDS |
TGTAGAAAGTACCTCATTAG+TGG | 0.485997 | 7.2:+3333331 | None:intergenic |
GTTGCACTTAAATAGTATCC+AGG | 0.487943 | 7.2:+3336089 | None:intergenic |
CTTTGGGATTGCTGTTTCTG+TGG | 0.491836 | 7.2:-3341771 | MS.gene29297:CDS |
GTAGGTCTCCCATCATCCCT+CGG | 0.494450 | 7.2:-3342305 | MS.gene29297:CDS |
CATTAGTGGTAGTGTTACTA+AGG | 0.495405 | 7.2:+3333345 | None:intergenic |
TCCTCAAAGGCTTTATACAT+TGG | 0.495811 | 7.2:-3341953 | MS.gene29297:CDS |
ATGTATGGAACAGTTCTCAT+AGG | 0.496520 | 7.2:-3333762 | MS.gene29297:CDS |
TTAGGTTGCCCGAGGGATGA+TGG | 0.499093 | 7.2:+3342296 | None:intergenic |
TTATTTCGCCTCTCTCTACA+AGG | 0.503049 | 7.2:-3332595 | MS.gene29297:CDS |
CTGGTTGGAATACTTCCTAA+AGG | 0.508155 | 7.2:-3340184 | MS.gene29297:CDS |
TGCGTCGGCATGAAGCGGCT+CGG | 0.517038 | 7.2:-3339333 | MS.gene29297:CDS |
TTTCATGTATAGCCTTGGCC+GGG | 0.517216 | 7.2:-3339588 | MS.gene29297:CDS |
TGACCAGCTTTACTGATCCT+GGG | 0.517218 | 7.2:-3335924 | MS.gene29297:CDS |
CTGCAATGCTTTGATCTAGC+AGG | 0.517826 | 7.2:+3335724 | None:intergenic |
CTCATAGGATTAATTCTCGC+AGG | 0.519022 | 7.2:-3333747 | MS.gene29297:CDS |
TTGTCTGCTGCTAGAAACCT+TGG | 0.520128 | 7.2:+3342244 | None:intergenic |
AGGCAGATTCTCAAGTTAGA+TGG | 0.520302 | 7.2:-3339381 | MS.gene29297:CDS |
AACCTAAACTTGCAAGGGTG+AGG | 0.520694 | 7.2:-3342280 | MS.gene29297:CDS |
GAGAAAGTTAAAAGAAGCGC+AGG | 0.522389 | 7.2:-3332783 | MS.gene29297:CDS |
GGTGTCATGCAGGTTAACTC+GGG | 0.525542 | 7.2:-3339757 | MS.gene29297:intron |
ATCTTAGGAGCATACTCAGT+TGG | 0.526715 | 7.2:+3332544 | None:intergenic |
CTTGCCGTGGCCATGTCTCT+GGG | 0.529052 | 7.2:-3339304 | MS.gene29297:CDS |
TGATTGCTGCTATTGTTGGA+GGG | 0.533663 | 7.2:-3341846 | MS.gene29297:CDS |
ACTGGGCTTCACACAGAAGA+AGG | 0.533968 | 7.2:-3339401 | MS.gene29297:CDS |
TAGGTTGCCCGAGGGATGAT+GGG | 0.534094 | 7.2:+3342297 | None:intergenic |
TAGACAAGGAGCTAACAAAA+GGG | 0.534186 | 7.2:-3342205 | MS.gene29297:CDS |
GATTGCTGCTATTGTTGGAG+GGG | 0.542235 | 7.2:-3341845 | MS.gene29297:CDS |
GCACTTGTTAAGGATTTACA+AGG | 0.547995 | 7.2:-3342164 | MS.gene29297:CDS |
CATGGTGTCTGTGTGGGCGT+AGG | 0.550618 | 7.2:-3342323 | MS.gene29297:CDS |
TAGGTCTCCCATCATCCCTC+GGG | 0.551003 | 7.2:-3342304 | MS.gene29297:CDS |
TAGAAACCTTGGTTGAGCAT+TGG | 0.557145 | 7.2:+3342255 | None:intergenic |
ATAGGCAAAGGAAGAGTTGA+CGG | 0.558591 | 7.2:+3336115 | None:intergenic |
TAGTTAGATTCTTTGCTCAA+CGG | 0.559584 | 7.2:-3339424 | MS.gene29297:CDS |
CTGATGCATGGTGTCTGTGT+GGG | 0.560006 | 7.2:-3342329 | MS.gene29297:CDS |
GCCGAAACACTGAAGCCCGT+TGG | 0.562867 | 7.2:+3342136 | None:intergenic |
TGTCCCAGGATCAGTAAAGC+TGG | 0.563242 | 7.2:+3335921 | None:intergenic |
TACTTGCAGAATAATTGCAT+AGG | 0.565761 | 7.2:-3335554 | MS.gene29297:intron |
TCGGGCAACCTAAACTTGCA+AGG | 0.567337 | 7.2:-3342286 | MS.gene29297:CDS |
CTGTATTGCAGACCTTCAAG+TGG | 0.570061 | 7.2:-3332826 | MS.gene29297:intron |
TACTAAGGCAAAGCTTTGCA+TGG | 0.571822 | 7.2:+3333360 | None:intergenic |
AGGTTTGGATGACATAAGAA+AGG | 0.577567 | 7.2:-3339527 | MS.gene29297:intron |
AAAACCTCACCTGTACAACA+TGG | 0.578089 | 7.2:+3333555 | None:intergenic |
TTTGGATGGTCTGATGAAGG+AGG | 0.579418 | 7.2:-3340146 | MS.gene29297:CDS |
CTCGGGGAAGGTATCAGCTA+CGG | 0.581377 | 7.2:-3339740 | MS.gene29297:intron |
CTCGGTGCATACCCCGGCCA+AGG | 0.582253 | 7.2:+3339576 | None:intergenic |
TTGGATGGTCTGATGAAGGA+GGG | 0.582343 | 7.2:-3340145 | MS.gene29297:CDS |
TTACTATGCAGGTTCCTCAA+AGG | 0.584607 | 7.2:-3341966 | MS.gene29297:intron |
GGCTCGGTCTAAGCTTGCCG+TGG | 0.586220 | 7.2:-3339317 | MS.gene29297:CDS |
GGTTCTCTCAATATTCAAGC+TGG | 0.589212 | 7.2:-3340124 | MS.gene29297:CDS |
CACAGGAGATAGAAGAGACA+TGG | 0.591418 | 7.2:+3341903 | None:intergenic |
AAGATACTCGGTGCATACCC+CGG | 0.592613 | 7.2:+3339570 | None:intergenic |
TGACCATCACTGTGGATGGA+TGG | 0.596777 | 7.2:-3335674 | MS.gene29297:intron |
CGGGCAACCTAAACTTGCAA+GGG | 0.599823 | 7.2:-3342285 | MS.gene29297:CDS |
TAGTAACACTACCACTAATG+AGG | 0.600625 | 7.2:-3333342 | MS.gene29297:intron |
GAGCCGCTTCATGCCGACGC+AGG | 0.600999 | 7.2:+3339335 | None:intergenic |
AGTGGCAAGACTACATGGAC+TGG | 0.601667 | 7.2:-3332808 | MS.gene29297:CDS |
TGCAAGTTTAGGTTGCCCGA+GGG | 0.604363 | 7.2:+3342289 | None:intergenic |
GATTTGACCATCACTGTGGA+TGG | 0.605648 | 7.2:-3335678 | MS.gene29297:CDS |
TTGCACTTAAATAGTATCCA+GGG | 0.606733 | 7.2:+3336090 | None:intergenic |
TGACTTGAGCAACCCTGTTG+TGG | 0.608572 | 7.2:+3340323 | None:intergenic |
ACTCCTGCGTCGGCATGAAG+CGG | 0.614282 | 7.2:-3339338 | MS.gene29297:CDS |
GAACCAAGAGTTGTATCCAC+AGG | 0.614813 | 7.2:+3341886 | None:intergenic |
TAACCATCCATCCACAGTGA+TGG | 0.615375 | 7.2:+3335671 | None:intergenic |
GCGCTAAAACAAAGTATCAG+TGG | 0.615716 | 7.2:-3332749 | MS.gene29297:CDS |
ACACAGTCTTACTCCTGCGT+CGG | 0.616405 | 7.2:-3339348 | MS.gene29297:CDS |
GTATCCAGGGATATAGGCAA+AGG | 0.616666 | 7.2:+3336103 | None:intergenic |
GATTTACAAGGCAAACCCAA+CGG | 0.620582 | 7.2:-3342152 | MS.gene29297:CDS |
CATGTCTCTTCTATCTCCTG+TGG | 0.624063 | 7.2:-3341902 | MS.gene29297:CDS |
TTCATGTATAGCCTTGGCCG+GGG | 0.624932 | 7.2:-3339587 | MS.gene29297:CDS |
TTTCTTGCACAATATTTGGG+AGG | 0.625047 | 7.2:-3332618 | MS.gene29297:CDS |
ACAACTATCACATCCTCCAA+AGG | 0.625747 | 7.2:+3332665 | None:intergenic |
TTGCAAGTTTAGGTTGCCCG+AGG | 0.626994 | 7.2:+3342288 | None:intergenic |
AAACCTCACCTGTACAACAT+GGG | 0.629986 | 7.2:+3333556 | None:intergenic |
TACAGAACTTCCCAGAGACA+TGG | 0.630261 | 7.2:+3339294 | None:intergenic |
TCTGATGCATGGTGTCTGTG+TGG | 0.635410 | 7.2:-3342330 | None:intergenic |
AACCTCACCTGTACAACATG+GGG | 0.636619 | 7.2:+3333557 | None:intergenic |
AAATCCATATATAAGATACT+CGG | 0.638034 | 7.2:+3339558 | None:intergenic |
CTTGCAGAATAATTGCATAG+GGG | 0.645521 | 7.2:-3335552 | MS.gene29297:intron |
ATTGCTTGAAAGTGTAGACA+AGG | 0.647018 | 7.2:-3342219 | MS.gene29297:CDS |
AAGGACTGCCTTGTAGAGAG+AGG | 0.652736 | 7.2:+3332587 | None:intergenic |
GTGTCATGCAGGTTAACTCG+GGG | 0.656072 | 7.2:-3339756 | MS.gene29297:intron |
CATGCAGGTTAACTCGGGGA+AGG | 0.658485 | 7.2:-3339752 | MS.gene29297:intron |
ATTGTTGGGATGCTGTTAGG+CGG | 0.658661 | 7.2:-3333395 | MS.gene29297:CDS |
GAGAAACTCAAAATCCACAA+AGG | 0.662893 | 7.2:+3340096 | None:intergenic |
CGGGCTTCAGTGTTTCGGCG+CGG | 0.680129 | 7.2:-3342132 | MS.gene29297:CDS |
CAGTCAGAAATACCACAACA+GGG | 0.684532 | 7.2:-3340335 | MS.gene29297:CDS |
ATTGGTTTGAGTCTGATGCA+TGG | 0.684860 | 7.2:-3342341 | None:intergenic |
GAGGATCCAATGCTCAACCA+AGG | 0.692642 | 7.2:-3342261 | MS.gene29297:CDS |
ACTTCCCAGAGACATGGCCA+CGG | 0.694284 | 7.2:+3339300 | None:intergenic |
AGACAAGGAGCTAACAAAAG+GGG | 0.696044 | 7.2:-3342204 | MS.gene29297:CDS |
GCACGATTTGACCATCACTG+TGG | 0.771092 | 7.2:-3335682 | MS.gene29297:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 3332559 | 3342348 | 3332559 | ID=MS.gene29297 |
chr7.2 | mRNA | 3332559 | 3342348 | 3332559 | ID=MS.gene29297.t1;Parent=MS.gene29297 |
chr7.2 | exon | 3342124 | 3342348 | 3342124 | ID=MS.gene29297.t1.exon1;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3342124 | 3342348 | 3342124 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3341759 | 3341977 | 3341759 | ID=MS.gene29297.t1.exon2;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3341759 | 3341977 | 3341759 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3340327 | 3340413 | 3340327 | ID=MS.gene29297.t1.exon3;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3340327 | 3340413 | 3340327 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3340090 | 3340236 | 3340090 | ID=MS.gene29297.t1.exon4;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3340090 | 3340236 | 3340090 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3339741 | 3339767 | 3339741 | ID=MS.gene29297.t1.exon5;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3339741 | 3339767 | 3339741 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3339528 | 3339623 | 3339528 | ID=MS.gene29297.t1.exon6;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3339528 | 3339623 | 3339528 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3339297 | 3339443 | 3339297 | ID=MS.gene29297.t1.exon7;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3339297 | 3339443 | 3339297 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3336083 | 3336177 | 3336083 | ID=MS.gene29297.t1.exon8;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3336083 | 3336177 | 3336083 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3335826 | 3335993 | 3335826 | ID=MS.gene29297.t1.exon9;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3335826 | 3335993 | 3335826 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3335675 | 3335747 | 3335675 | ID=MS.gene29297.t1.exon10;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3335675 | 3335747 | 3335675 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3335515 | 3335567 | 3335515 | ID=MS.gene29297.t1.exon11;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3335515 | 3335567 | 3335515 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3333709 | 3333800 | 3333709 | ID=MS.gene29297.t1.exon12;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3333709 | 3333800 | 3333709 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3333565 | 3333617 | 3333565 | ID=MS.gene29297.t1.exon13;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3333565 | 3333617 | 3333565 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3333343 | 3333468 | 3333343 | ID=MS.gene29297.t1.exon14;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3333343 | 3333468 | 3333343 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
chr7.2 | exon | 3332559 | 3332837 | 3332559 | ID=MS.gene29297.t1.exon15;Parent=MS.gene29297.t1 |
chr7.2 | CDS | 3332559 | 3332837 | 3332559 | ID=cds.MS.gene29297.t1;Parent=MS.gene29297.t1 |
Gene Sequence |
Protein sequence |