AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058459


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058459.t1 MTR_1g013450 95.268 317 14 1 1 317 1 316 0.0 628
MS.gene058459.t1 MTR_3g105710 55.077 325 103 8 1 317 1 290 1.04e-102 303
MS.gene058459.t1 MTR_4g128930 45.810 358 146 7 4 316 20 374 1.17e-93 283
MS.gene058459.t1 MTR_7g018170 62.500 88 33 0 4 91 24 111 7.07e-35 130
MS.gene058459.t1 MTR_7g018170 66.216 74 17 1 251 316 322 395 1.19e-23 100
MS.gene058459.t1 MTR_1g023260 46.392 97 42 1 6 92 5 101 1.79e-22 95.1
MS.gene058459.t1 MTR_1g023260 46.392 97 42 1 6 92 5 101 3.05e-22 92.4
MS.gene058459.t1 MTR_5g069480 37.692 130 76 2 5 131 4 131 5.37e-21 92.8
MS.gene058459.t1 MTR_5g069480 37.692 130 76 2 5 131 4 131 6.24e-21 91.3
MS.gene058459.t1 MTR_5g021580 44.565 92 41 2 5 88 4 93 4.74e-19 83.6
MS.gene058459.t1 MTR_5g021580 44.211 95 43 2 5 91 4 96 5.18e-19 83.6
MS.gene058459.t1 MTR_4g071200 43.299 97 45 1 6 92 5 101 7.66e-19 84.0
MS.gene058459.t1 MTR_2g073370 41.667 96 47 1 6 92 5 100 4.84e-18 83.2
MS.gene058459.t1 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.28e-18 81.6
MS.gene058459.t1 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.82e-18 81.6
MS.gene058459.t1 MTR_3g082630 37.500 104 64 1 5 108 4 106 7.36e-18 84.0
MS.gene058459.t1 MTR_3g117320 41.237 97 47 1 6 92 5 101 2.26e-17 80.1
MS.gene058459.t1 MTR_7g108150 39.326 89 53 1 6 94 20 107 9.21e-17 80.5
MS.gene058459.t1 MTR_7g108150 35.659 129 69 4 172 297 252 369 7.87e-12 65.9
MS.gene058459.t1 MTR_3g113070 37.864 103 53 1 6 97 5 107 2.86e-16 77.0
MS.gene058459.t1 MTR_2g099010 40.217 92 46 1 6 88 5 96 8.92e-16 75.9
MS.gene058459.t1 MTR_2g099010 40.217 92 46 1 6 88 5 96 9.69e-16 75.9
MS.gene058459.t1 MTR_7g083540 38.710 93 52 1 6 98 5 92 2.26e-14 73.6
MS.gene058459.t1 MTR_3g034680 60.000 45 18 0 50 94 11 55 7.56e-14 67.0
MS.gene058459.t1 MTR_2g088900 29.245 212 117 8 5 206 100 288 3.40e-13 70.5
MS.gene058459.t1 MTR_5g072780 49.275 69 32 1 233 298 148 216 8.63e-13 67.0
MS.gene058459.t1 MTR_1g109350 36.486 74 47 0 4 77 3 76 1.87e-12 67.4
MS.gene058459.t1 MTR_1g110870 46.341 82 37 2 222 301 351 427 1.51e-11 65.1
MS.gene058459.t1 MTR_8g104190 68.182 44 14 0 256 299 358 401 2.24e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058459.t1 AT5G24930 53.714 350 105 14 1 302 1 341 1.53e-96 290
MS.gene058459.t1 AT2G24790 53.074 309 104 11 2 304 4 277 8.97e-95 283
MS.gene058459.t1 AT3G02380 42.899 338 163 7 4 316 14 346 2.48e-82 253
MS.gene058459.t1 AT5G57660 43.103 348 154 10 2 316 18 354 3.01e-73 230
MS.gene058459.t1 AT5G15850 40.230 348 166 9 6 316 12 354 3.85e-70 222
MS.gene058459.t1 AT5G15840 39.335 361 161 13 6 316 20 372 7.11e-70 222
MS.gene058459.t1 AT2G24790 50.237 211 75 7 2 208 4 188 1.08e-57 186
MS.gene058459.t1 AT5G15840 35.000 240 114 9 6 211 20 251 1.20e-34 127
MS.gene058459.t1 AT2G21320 44.211 95 43 2 5 91 4 96 5.02e-19 83.2
MS.gene058459.t1 AT4G38960 43.158 95 44 2 5 91 4 96 1.04e-18 82.8
MS.gene058459.t1 AT4G38960 43.158 95 44 2 5 91 4 96 1.04e-18 82.8
MS.gene058459.t1 AT1G78600 42.708 96 46 1 6 92 5 100 1.81e-18 84.3
MS.gene058459.t1 AT1G78600 42.708 96 46 1 6 92 5 100 2.35e-18 84.3
MS.gene058459.t1 AT1G75540 40.404 99 47 1 6 92 5 103 1.18e-17 82.8
MS.gene058459.t1 AT2G47890 40.659 91 52 1 4 94 11 99 1.58e-17 82.0
MS.gene058459.t1 AT2G47890 40.659 91 52 1 4 94 11 99 1.70e-17 82.0
MS.gene058459.t1 AT2G47890 56.000 50 22 0 251 300 282 331 6.13e-11 62.8
MS.gene058459.t1 AT2G47890 40.659 91 52 1 4 94 11 99 2.57e-17 80.1
MS.gene058459.t1 AT2G33500 40.449 89 53 0 6 94 12 100 4.54e-17 81.6
MS.gene058459.t1 AT2G33500 50.794 63 30 1 239 300 339 401 5.60e-11 63.5
MS.gene058459.t1 AT2G33500 40.449 89 53 0 6 94 12 100 4.60e-17 81.6
MS.gene058459.t1 AT2G33500 50.794 63 30 1 239 300 338 400 5.80e-11 63.5
MS.gene058459.t1 AT1G06040 43.478 92 43 1 6 88 5 96 1.12e-16 78.6
MS.gene058459.t1 AT1G06040 43.478 92 43 1 6 88 5 96 2.01e-16 76.3
MS.gene058459.t1 AT1G28050 40.449 89 53 0 6 94 9 97 2.07e-16 79.7
MS.gene058459.t1 AT5G48250 42.667 75 43 0 5 79 4 78 2.37e-16 79.3
MS.gene058459.t1 AT2G31380 29.798 198 80 6 6 144 5 202 1.14e-15 75.5
MS.gene058459.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.33e-15 76.3
MS.gene058459.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.33e-15 76.3
MS.gene058459.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.33e-15 76.3
MS.gene058459.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.33e-15 76.3
MS.gene058459.t1 AT4G15250 40.476 84 50 0 6 89 5 88 3.24e-15 75.5
MS.gene058459.t1 AT4G39070 38.776 98 50 1 5 92 4 101 2.43e-14 72.0
MS.gene058459.t1 AT1G68190 36.264 91 56 1 4 94 12 100 7.80e-14 71.6
MS.gene058459.t1 AT1G68190 36.264 91 56 1 4 94 12 100 7.80e-14 71.6
MS.gene058459.t1 AT1G68190 38.961 77 47 0 4 80 41 117 8.47e-14 71.6
MS.gene058459.t1 AT1G49130 53.968 63 29 0 237 299 259 321 1.22e-13 70.9
MS.gene058459.t1 AT1G49130 53.968 63 29 0 237 299 252 314 1.38e-13 70.9
MS.gene058459.t1 AT4G10240 36.275 102 46 2 6 92 5 102 2.08e-13 67.4
MS.gene058459.t1 AT1G73870 70.213 47 14 0 255 301 344 390 2.16e-13 70.5
MS.gene058459.t1 AT3G21880 36.364 88 46 1 6 83 9 96 6.68e-13 68.9
MS.gene058459.t1 AT3G21880 36.364 88 46 1 6 83 9 96 6.68e-13 68.9
MS.gene058459.t1 AT3G21880 36.364 88 46 1 6 83 5 92 7.27e-13 68.9
MS.gene058459.t1 AT1G68520 64.583 48 17 0 256 303 357 404 5.29e-12 66.6
MS.gene058459.t1 AT5G14370 66.667 45 15 0 256 300 294 338 1.08e-11 65.1
MS.gene058459.t1 AT1G25440 69.767 43 13 0 256 298 361 403 2.93e-11 64.3

Find 87 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGAGATCAGGGAATTT+AGG 0.162993 1.4:-7282898 None:intergenic
AGCAGCTGCGTCGGCTTTGC+AGG 0.207136 1.4:-7282683 None:intergenic
GCGAACCTTCCTTTAATTCT+AGG 0.237184 1.4:-7283473 None:intergenic
GAAACTCGACCTAGAATTAA+AGG 0.252531 1.4:+7283464 MS.gene058459:CDS
ATTTAGGGTTTGAAGGAGTT+TGG 0.272290 1.4:-7282882 None:intergenic
AATTGAGATCAGGGAATTTA+GGG 0.282604 1.4:-7282897 None:intergenic
GTGACGAAATCGTCAATTTC+GGG 0.319268 1.4:-7282937 None:intergenic
TGTTGCTTTGGATGACTTGC+AGG 0.340517 1.4:-7282527 None:intergenic
AAGAAGCAGAAGCTGCTTCC+TGG 0.355450 1.4:+7282854 MS.gene058459:CDS
TCAGGGAATTTAGGGTTTGA+AGG 0.367060 1.4:-7282889 None:intergenic
AGTGACGAAATCGTCAATTT+CGG 0.368521 1.4:-7282938 None:intergenic
GACGCCATCTGCGGTGGTGC+CGG 0.374473 1.4:-7282998 None:intergenic
CACCGCAGATGGCGTCGTTC+CGG 0.376246 1.4:+7283005 MS.gene058459:CDS
GTGGCGGGAGGCGAGTTTGT+TGG 0.388480 1.4:-7282611 None:intergenic
GTTGTTGTTGTGGTGGTGGA+AGG 0.394821 1.4:-7282782 None:intergenic
GAGAGAAAAGAAAGAATAGA+AGG 0.401420 1.4:+7283399 MS.gene058459:CDS
GAGTGTGACGCGGTGGTGGC+GGG 0.403622 1.4:-7282626 None:intergenic
TAGTGAGAGTAATTGAGATC+AGG 0.412297 1.4:-7282907 None:intergenic
ACGGCAGAATAGTGTTGCTT+TGG 0.415438 1.4:-7282539 None:intergenic
CAGAGAAGAATGATTGTTGT+TGG 0.418301 1.4:-7282807 None:intergenic
AGCTTCTGCTTCTTCGTTGG+TGG 0.421356 1.4:-7282845 None:intergenic
GGCTGTTGTTGTTGTGGTGG+TGG 0.426525 1.4:-7282786 None:intergenic
CCGTCTCTGTCGCCGTCGTT+TGG 0.426542 1.4:-7283313 None:intergenic
ACGCCATCTGCGGTGGTGCC+GGG 0.428709 1.4:-7282997 None:intergenic
AGAGTGTGACGCGGTGGTGG+CGG 0.429623 1.4:-7282627 None:intergenic
AACTTCATACATAGTTCAAC+AGG 0.431616 1.4:-7283555 None:intergenic
AGTGAGAGTAATTGAGATCA+GGG 0.433298 1.4:-7282906 None:intergenic
TCCGTCATCACGTTTCCGTC+TGG 0.440194 1.4:-7283272 None:intergenic
CGTTCGTGGCGGCGAGCTAG+TGG 0.441707 1.4:-7282745 None:intergenic
ATCGGAACCGCCACCGTCAT+CGG 0.447848 1.4:-7283338 None:intergenic
CCGGAGCTTGTTCACAGACT+TGG 0.464846 1.4:-7282651 None:intergenic
TTAGGTATCTTCGCCGTCGA+TGG 0.464857 1.4:+7283235 MS.gene058459:intron
TGGTGGTGGAAGGTGGTGAG+AGG 0.469506 1.4:-7282772 None:intergenic
TCTCTTTCCACCGCCGTCAT+CGG 0.470887 1.4:-7283356 None:intergenic
AGCAGCTTCTGCTTCTTCGT+TGG 0.474181 1.4:-7282848 None:intergenic
GCTTTGCAGGTGACGTGAGC+CGG 0.474575 1.4:-7282670 None:intergenic
GGCGGTTCCGATGACGGCGG+TGG 0.476197 1.4:+7283349 MS.gene058459:CDS
GACGGTGGCGGTTCCGATGA+CGG 0.482863 1.4:+7283343 MS.gene058459:CDS
GACGATTTCGTCACTGTCAA+CGG 0.491915 1.4:+7282946 MS.gene058459:CDS
TTAATTGCAGAGGATGAATA+CGG 0.494889 1.4:+7283521 MS.gene058459:CDS
TGAAGGAGTTTGGAGAAGCC+AGG 0.505414 1.4:-7282872 None:intergenic
GGCAGAGTGTGACGCGGTGG+TGG 0.506125 1.4:-7282630 None:intergenic
GTAGTGTTCGTGTTCGTGTT+CGG 0.509358 1.4:-7283052 None:intergenic
GTTGTTGTGGTGGTGGAAGG+TGG 0.511007 1.4:-7282779 None:intergenic
TGGTGAGAGGGACACGTTCG+TGG 0.516914 1.4:-7282759 None:intergenic
GTTGGCTGTTGTTGTTGTGG+TGG 0.517079 1.4:-7282789 None:intergenic
GGTATCTTCGCCGTCGATGG+AGG 0.526645 1.4:+7283238 MS.gene058459:intron
CCAAGTCTGTGAACAAGCTC+CGG 0.534270 1.4:+7282651 MS.gene058459:CDS
AAATATGAATTTAATTGCAG+AGG 0.534945 1.4:+7283511 MS.gene058459:CDS
TTCGTGTTCGTGTTCGGTGG+TGG 0.536195 1.4:-7283046 None:intergenic
AGTCCCGGCACCACCGCAGA+TGG 0.542153 1.4:+7282994 MS.gene058459:CDS
CGGCGGTGGAAAGAGAAGCT+AGG 0.543681 1.4:+7283363 MS.gene058459:CDS
GTTCGTGGCGGCGAGCTAGT+GGG 0.545982 1.4:-7282744 None:intergenic
GTTGTTGGCTGTTGTTGTTG+TGG 0.546859 1.4:-7282792 None:intergenic
GGTGGTGGAAGGTGGTGAGA+GGG 0.548296 1.4:-7282771 None:intergenic
AGGCGAGTTTGTTGGCAGCA+TGG 0.549459 1.4:-7282603 None:intergenic
AGAGTGGATGTCATGATCAC+AGG 0.550527 1.4:-7282716 None:intergenic
TCTTCGCCGTCGATGGAGGT+TGG 0.551535 1.4:+7283242 MS.gene058459:CDS
ACGCCGGAGCAAAACAGTCC+CGG 0.553478 1.4:+7282979 MS.gene058459:CDS
CGGAACGACGCCATCTGCGG+TGG 0.553872 1.4:-7283004 None:intergenic
GGCGGTGGAAAGAGAAGCTA+GGG 0.558883 1.4:+7283364 MS.gene058459:CDS
GACGGCGCCGATGACGGTGG+CGG 0.560155 1.4:+7283331 MS.gene058459:CDS
ACCAGACGGAAACGTGATGA+CGG 0.572547 1.4:+7283271 MS.gene058459:CDS
TGATTGAAATTGTAAGTGAA+AGG 0.578430 1.4:-7283108 None:intergenic
TGTGACGCGGTGGTGGCGGG+AGG 0.581988 1.4:-7282623 None:intergenic
TTTGTTGGCAGCATGGATGT+TGG 0.587996 1.4:-7282596 None:intergenic
CACCGGAACGACGCCATCTG+CGG 0.589463 1.4:-7283007 None:intergenic
GACAGAGACGGCGCCGATGA+CGG 0.593724 1.4:+7283325 MS.gene058459:CDS
CCAAACGACGGCGACAGAGA+CGG 0.604022 1.4:+7283313 MS.gene058459:CDS
TGGAATCACATGTGAGACAA+AGG 0.606070 1.4:-7282576 None:intergenic
GATACATAGAGCAGCTGCGT+CGG 0.618915 1.4:-7282692 None:intergenic
CTCGACCTAGAATTAAAGGA+AGG 0.631588 1.4:+7283468 MS.gene058459:CDS
AAAGGAAAGCTGAATCAGAA+CGG 0.631900 1.4:-7282558 None:intergenic
ACAACTCCAACCTCCATCGA+CGG 0.637687 1.4:-7283248 None:intergenic
GTGTTCGTGTTCGTGTTCGG+TGG 0.637730 1.4:-7283049 None:intergenic
GAGCTAGTGGGTTAGCAGAG+TGG 0.641063 1.4:-7282732 None:intergenic
TCATACATAGTTCAACAGGA+AGG 0.676360 1.4:-7283551 None:intergenic
AGAGACGGCGCCGATGACGG+TGG 0.685333 1.4:+7283328 MS.gene058459:CDS
GAGGTTGGAGTTGTACCAGA+CGG 0.695762 1.4:+7283257 MS.gene058459:CDS
TGAGAGGGACACGTTCGTGG+CGG 0.705181 1.4:-7282756 None:intergenic
CAACGGTAAAACAGACACGC+CGG 0.705434 1.4:+7282963 MS.gene058459:CDS
CTTGGCAGAGTGTGACGCGG+TGG 0.706255 1.4:-7282633 None:intergenic
AGACTTGGCAGAGTGTGACG+CGG 0.706454 1.4:-7282636 None:intergenic
TGACGAAATCGTCAATTTCG+GGG 0.717237 1.4:-7282936 None:intergenic
GTACTGCGGTTACCAAACGA+CGG 0.762753 1.4:+7283301 MS.gene058459:CDS
GGTGGCGGTTCCGATGACGG+CGG 0.772550 1.4:+7283346 MS.gene058459:CDS
ATGACGGAGATATCGTACTG+CGG 0.812252 1.4:+7283287 MS.gene058459:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTAATTTTTTTGAATTT+TGG - chr1.4:7283153-7283172 None:intergenic 15.0%
!! AAATATGAATTTAATTGCAG+AGG + chr1.4:7283511-7283530 MS.gene058459:CDS 20.0%
!!! ATTTCTTTTTTGTGTTGTTT+AGG + chr1.4:7283217-7283236 MS.gene058459:intron 20.0%
! TGATTGAAATTGTAAGTGAA+AGG - chr1.4:7283111-7283130 None:intergenic 25.0%
AATTGAGATCAGGGAATTTA+GGG - chr1.4:7282900-7282919 None:intergenic 30.0%
ATTCAGAGTTCAAATTGAAG+AGG - chr1.4:7283191-7283210 None:intergenic 30.0%
GAGAGAAAAGAAAGAATAGA+AGG + chr1.4:7283399-7283418 MS.gene058459:CDS 30.0%
TAATTGAGATCAGGGAATTT+AGG - chr1.4:7282901-7282920 None:intergenic 30.0%
TTAATTGCAGAGGATGAATA+CGG + chr1.4:7283521-7283540 MS.gene058459:CDS 30.0%
! TTTTGGATTTCTCGTTCTTA+CGG - chr1.4:7283136-7283155 None:intergenic 30.0%
AAAGGAAAGCTGAATCAGAA+CGG - chr1.4:7282561-7282580 None:intergenic 35.0%
AGTGACGAAATCGTCAATTT+CGG - chr1.4:7282941-7282960 None:intergenic 35.0%
AGTGAGAGTAATTGAGATCA+GGG - chr1.4:7282909-7282928 None:intergenic 35.0%
CAGAGAAGAATGATTGTTGT+TGG - chr1.4:7282810-7282829 None:intergenic 35.0%
GAAACTCGACCTAGAATTAA+AGG + chr1.4:7283464-7283483 MS.gene058459:CDS 35.0%
TAGTGAGAGTAATTGAGATC+AGG - chr1.4:7282910-7282929 None:intergenic 35.0%
! AAAGAGAAGCTAGGGTTTTA+AGG + chr1.4:7283372-7283391 MS.gene058459:CDS 35.0%
! ATTTAGGGTTTGAAGGAGTT+TGG - chr1.4:7282885-7282904 None:intergenic 35.0%
!!! GTAAGTGAAAGGTTTTGAGT+TGG - chr1.4:7283100-7283119 None:intergenic 35.0%
CTCGACCTAGAATTAAAGGA+AGG + chr1.4:7283468-7283487 MS.gene058459:CDS 40.0%
GCGAACCTTCCTTTAATTCT+AGG - chr1.4:7283476-7283495 None:intergenic 40.0%
GTGACGAAATCGTCAATTTC+GGG - chr1.4:7282940-7282959 None:intergenic 40.0%
TGACGAAATCGTCAATTTCG+GGG - chr1.4:7282939-7282958 None:intergenic 40.0%
TGGAATCACATGTGAGACAA+AGG - chr1.4:7282579-7282598 None:intergenic 40.0%
! TCAGGGAATTTAGGGTTTGA+AGG - chr1.4:7282892-7282911 None:intergenic 40.0%
AGAGTGGATGTCATGATCAC+AGG - chr1.4:7282719-7282738 None:intergenic 45.0%
GACGATTTCGTCACTGTCAA+CGG + chr1.4:7282946-7282965 MS.gene058459:CDS 45.0%
GTAGTGTTCGTGTTCGTGTT+CGG - chr1.4:7283055-7283074 None:intergenic 45.0%
TTTGTTGGCAGCATGGATGT+TGG - chr1.4:7282599-7282618 None:intergenic 45.0%
! ATGACGGAGATATCGTACTG+CGG + chr1.4:7283287-7283306 MS.gene058459:CDS 45.0%
! GTTGTTGGCTGTTGTTGTTG+TGG - chr1.4:7282795-7282814 None:intergenic 45.0%
!! ACGGCAGAATAGTGTTGCTT+TGG - chr1.4:7282542-7282561 None:intergenic 45.0%
!! TGTTGCTTTGGATGACTTGC+AGG - chr1.4:7282530-7282549 None:intergenic 45.0%
AAGAAGCAGAAGCTGCTTCC+TGG + chr1.4:7282854-7282873 MS.gene058459:CDS 50.0%
ACAACTCCAACCTCCATCGA+CGG - chr1.4:7283251-7283270 None:intergenic 50.0%
ACCAGACGGAAACGTGATGA+CGG + chr1.4:7283271-7283290 MS.gene058459:CDS 50.0%
AGCAGCTTCTGCTTCTTCGT+TGG - chr1.4:7282851-7282870 None:intergenic 50.0%
AGCTTCTGCTTCTTCGTTGG+TGG - chr1.4:7282848-7282867 None:intergenic 50.0%
CAACGGTAAAACAGACACGC+CGG + chr1.4:7282963-7282982 MS.gene058459:CDS 50.0%
CCAAGTCTGTGAACAAGCTC+CGG + chr1.4:7282651-7282670 MS.gene058459:CDS 50.0%
GAGGTTGGAGTTGTACCAGA+CGG + chr1.4:7283257-7283276 MS.gene058459:CDS 50.0%
GATACATAGAGCAGCTGCGT+CGG - chr1.4:7282695-7282714 None:intergenic 50.0%
GTACTGCGGTTACCAAACGA+CGG + chr1.4:7283301-7283320 MS.gene058459:CDS 50.0%
TGAAGGAGTTTGGAGAAGCC+AGG - chr1.4:7282875-7282894 None:intergenic 50.0%
TTAGGTATCTTCGCCGTCGA+TGG + chr1.4:7283235-7283254 MS.gene058459:intron 50.0%
! GTTGGCTGTTGTTGTTGTGG+TGG - chr1.4:7282792-7282811 None:intergenic 50.0%
!! GTTGTTGTTGTGGTGGTGGA+AGG - chr1.4:7282785-7282804 None:intergenic 50.0%
!!! GTTTTGCTCTGAGACTGCAC+CGG - chr1.4:7283027-7283046 None:intergenic 50.0%
AGACTTGGCAGAGTGTGACG+CGG - chr1.4:7282639-7282658 None:intergenic 55.0%
GGCGGTGGAAAGAGAAGCTA+GGG + chr1.4:7283364-7283383 MS.gene058459:CDS 55.0%
GTGTTCGTGTTCGTGTTCGG+TGG - chr1.4:7283052-7283071 None:intergenic 55.0%
TCCGTCATCACGTTTCCGTC+TGG - chr1.4:7283275-7283294 None:intergenic 55.0%
TCTCTTTCCACCGCCGTCAT+CGG - chr1.4:7283359-7283378 None:intergenic 55.0%
! CCGGAGCTTGTTCACAGACT+TGG - chr1.4:7282654-7282673 None:intergenic 55.0%
! GGCTGTTGTTGTTGTGGTGG+TGG - chr1.4:7282789-7282808 None:intergenic 55.0%
! TTCGTGTTCGTGTTCGGTGG+TGG - chr1.4:7283049-7283068 None:intergenic 55.0%
!! AGGCGAGTTTGTTGGCAGCA+TGG - chr1.4:7282606-7282625 None:intergenic 55.0%
!! GAGCTAGTGGGTTAGCAGAG+TGG - chr1.4:7282735-7282754 None:intergenic 55.0%
!! GTTGTTGTGGTGGTGGAAGG+TGG - chr1.4:7282782-7282801 None:intergenic 55.0%
ACGCCGGAGCAAAACAGTCC+CGG + chr1.4:7282979-7282998 MS.gene058459:CDS 60.0%
ATCGGAACCGCCACCGTCAT+CGG - chr1.4:7283341-7283360 None:intergenic 60.0%
CCAAACGACGGCGACAGAGA+CGG + chr1.4:7283313-7283332 MS.gene058459:CDS 60.0%
CGGCGGTGGAAAGAGAAGCT+AGG + chr1.4:7283363-7283382 MS.gene058459:CDS 60.0%
GCTTTGCAGGTGACGTGAGC+CGG - chr1.4:7282673-7282692 None:intergenic 60.0%
GGTATCTTCGCCGTCGATGG+AGG + chr1.4:7283238-7283257 MS.gene058459:intron 60.0%
TCTTCGCCGTCGATGGAGGT+TGG + chr1.4:7283242-7283261 MS.gene058459:CDS 60.0%
TGAGAGGGACACGTTCGTGG+CGG - chr1.4:7282759-7282778 None:intergenic 60.0%
TGGTGAGAGGGACACGTTCG+TGG - chr1.4:7282762-7282781 None:intergenic 60.0%
! GTGCCGGGACTGTTTTGCTC+CGG - chr1.4:7282985-7283004 None:intergenic 60.0%
!! GGTGGTGGAAGGTGGTGAGA+GGG - chr1.4:7282774-7282793 None:intergenic 60.0%
!! TGGTGGTGGAAGGTGGTGAG+AGG - chr1.4:7282775-7282794 None:intergenic 60.0%
CACCGCAGATGGCGTCGTTC+CGG + chr1.4:7283005-7283024 MS.gene058459:CDS 65.0%
CACCGGAACGACGCCATCTG+CGG - chr1.4:7283010-7283029 None:intergenic 65.0%
CCGTCTCTGTCGCCGTCGTT+TGG - chr1.4:7283316-7283335 None:intergenic 65.0%
CTTGGCAGAGTGTGACGCGG+TGG - chr1.4:7282636-7282655 None:intergenic 65.0%
GTTCGTGGCGGCGAGCTAGT+GGG - chr1.4:7282747-7282766 None:intergenic 65.0%
! AGAGTGTGACGCGGTGGTGG+CGG - chr1.4:7282630-7282649 None:intergenic 65.0%
! GACGGTGGCGGTTCCGATGA+CGG + chr1.4:7283343-7283362 MS.gene058459:CDS 65.0%
! GTGGCGGGAGGCGAGTTTGT+TGG - chr1.4:7282614-7282633 None:intergenic 65.0%
!! AGCAGCTGCGTCGGCTTTGC+AGG - chr1.4:7282686-7282705 None:intergenic 65.0%
!! GACAGAGACGGCGCCGATGA+CGG + chr1.4:7283325-7283344 MS.gene058459:CDS 65.0%
ACGCCATCTGCGGTGGTGCC+GGG - chr1.4:7283000-7283019 None:intergenic 70.0%
AGTCCCGGCACCACCGCAGA+TGG + chr1.4:7282994-7283013 MS.gene058459:CDS 70.0%
CGGAACGACGCCATCTGCGG+TGG - chr1.4:7283007-7283026 None:intergenic 70.0%
CGTTCGTGGCGGCGAGCTAG+TGG - chr1.4:7282748-7282767 None:intergenic 70.0%
GACGCCATCTGCGGTGGTGC+CGG - chr1.4:7283001-7283020 None:intergenic 70.0%
GGCAGAGTGTGACGCGGTGG+TGG - chr1.4:7282633-7282652 None:intergenic 70.0%
! GAGTGTGACGCGGTGGTGGC+GGG - chr1.4:7282629-7282648 None:intergenic 70.0%
! GGTGGCGGTTCCGATGACGG+CGG + chr1.4:7283346-7283365 MS.gene058459:CDS 70.0%
!! AGAGACGGCGCCGATGACGG+TGG + chr1.4:7283328-7283347 MS.gene058459:CDS 70.0%
! GGCGGTTCCGATGACGGCGG+TGG + chr1.4:7283349-7283368 MS.gene058459:CDS 75.0%
!! GACGGCGCCGATGACGGTGG+CGG + chr1.4:7283331-7283350 MS.gene058459:CDS 75.0%
!! TGTGACGCGGTGGTGGCGGG+AGG - chr1.4:7282626-7282645 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 7282505 7283562 7282505 ID=MS.gene058459
chr1.4 mRNA 7282505 7283562 7282505 ID=MS.gene058459.t1;Parent=MS.gene058459
chr1.4 exon 7282505 7283134 7282505 ID=MS.gene058459.t1.exon1;Parent=MS.gene058459.t1
chr1.4 CDS 7282505 7283134 7282505 ID=cds.MS.gene058459.t1;Parent=MS.gene058459.t1
chr1.4 exon 7283239 7283562 7283239 ID=MS.gene058459.t1.exon2;Parent=MS.gene058459.t1
chr1.4 CDS 7283239 7283562 7283239 ID=cds.MS.gene058459.t1;Parent=MS.gene058459.t1
Gene Sequence

>MS.gene058459

ATGGCTACTAAGCTATGTGATTCCTGCAAGTCATCCAAAGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTTTGTCTCACATGTGATTCCAACATCCATGCTGCCAACAAACTCGCCTCCCGCCACCACCGCGTCACACTCTGCCAAGTCTGTGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGCTCTATGTATCTCCTGTGATCATGACATCCACTCTGCTAACCCACTAGCTCGCCGCCACGAACGTGTCCCTCTCACCACCTTCCACCACCACAACAACAACAGCCAACAACAATCATTCTTCTCTGAAAATGATCACGATGCCACCAACGAAGAAGCAGAAGCTGCTTCCTGGCTTCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATTGACGATTTCGTCACTGTCAACGGTAAAACAGACACGCCGGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCTCAGAGCAAAACCACCACCGAACACGAACACGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTTCAATCACACCGTAAGAACGAGAAATCCAAAATTCAAAAAAATTACGATGAATCGTGAAATTTACCTCTTCAATTTGAACTCTGAATGTTCTTATTTCTTTTTTGTGTTGTTTAGGTATCTTCGCCGTCGATGGAGGTTGGAGTTGTACCAGACGGAAACGTGATGACGGAGATATCGTACTGCGGTTACCAAACGACGGCGACAGAGACGGCGCCGATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTTAAGGTACAGAGAGAAAAGAAAGAATAGAAGGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCTTATGCAGAAACTCGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCAGATTTAAATATGAATTTAATTGCAGAGGATGAATACGGCGTCGTTCCTTCCTGTTGA

Protein sequence

>MS.gene058459.t1

MATKLCDSCKSSKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAALCISCDHDIHSANPLARRHERVPLTTFHHHNNNSQQQSFFSENDHDATNEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVNGKTDTPEQNSPGTTADGVVPVQSQSKTTTEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMEVGVVPDGNVMTEISYCGYQTTATETAPMTVAVPMTAVEREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC