Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29520.t1 | XP_003616475.1 | 100 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 3.20E-194 | 687.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29520.t1 | O22287 | 91.1 | 361 | 32 | 0 | 1 | 361 | 1 | 361 | 1.4e-179 | 630.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29520.t1 | G7KGV6 | 100.0 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 2.3e-194 | 687.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051433 | MS.gene29520 | 0.819606 | 1.06E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29520 | MS.gene07262 | PPI |
| MS.gene20783 | MS.gene29520 | PPI |
| MS.gene29520 | MS.gene20834 | PPI |
| MS.gene70588 | MS.gene29520 | PPI |
| MS.gene022258 | MS.gene29520 | PPI |
| MS.gene25915 | MS.gene29520 | PPI |
| MS.gene074391 | MS.gene29520 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29520.t1 | MTR_5g080770 | 100.000 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 0.0 | 734 |
| MS.gene29520.t1 | MTR_3g069070 | 93.075 | 361 | 25 | 0 | 1 | 361 | 1 | 361 | 0.0 | 684 |
| MS.gene29520.t1 | MTR_3g069070 | 92.384 | 302 | 23 | 0 | 60 | 361 | 1 | 302 | 0.0 | 572 |
| MS.gene29520.t1 | MTR_4g133690 | 77.562 | 361 | 24 | 3 | 1 | 361 | 1 | 304 | 0.0 | 537 |
| MS.gene29520.t1 | MTR_3g078570 | 32.000 | 400 | 224 | 7 | 3 | 354 | 10 | 409 | 6.02e-63 | 206 |
| MS.gene29520.t1 | MTR_6g008840 | 32.432 | 407 | 226 | 8 | 3 | 361 | 9 | 414 | 4.62e-61 | 202 |
| MS.gene29520.t1 | MTR_3g078570 | 31.755 | 359 | 206 | 6 | 3 | 322 | 10 | 368 | 8.87e-57 | 189 |
| MS.gene29520.t1 | MTR_4g071670 | 31.034 | 232 | 108 | 6 | 168 | 361 | 3 | 220 | 6.65e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29520.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene29520.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene29520.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene29520.t1 | AT3G55590 | 85.165 | 364 | 51 | 1 | 1 | 361 | 1 | 364 | 0.0 | 636 |
| MS.gene29520.t1 | AT4G30570 | 76.292 | 329 | 77 | 1 | 21 | 348 | 1 | 329 | 0.0 | 515 |
| MS.gene29520.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 3 | 361 | 11 | 415 | 2.10e-62 | 205 |
| MS.gene29520.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 3 | 361 | 11 | 415 | 2.10e-62 | 205 |
| MS.gene29520.t1 | AT2G04650 | 31.552 | 393 | 228 | 7 | 3 | 354 | 8 | 400 | 1.78e-61 | 202 |
| MS.gene29520.t1 | AT2G04650 | 31.169 | 385 | 226 | 6 | 9 | 354 | 4 | 388 | 4.88e-61 | 201 |
| MS.gene29520.t1 | AT1G74910 | 30.685 | 365 | 215 | 6 | 3 | 329 | 11 | 375 | 6.87e-57 | 190 |
Find 111 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGGTCCTTCCTGGTTTC+TGG | 0.049637 | 5.2:+68651656 | MS.gene29520:CDS |
| GAGACATCCCTCGCCAATTT+TGG | 0.195747 | 5.2:-68651809 | None:intergenic |
| CCTATTGAATCCCTCTGTTT+TGG | 0.205302 | 5.2:+68651558 | MS.gene29520:CDS |
| TACCTCTGGTTGGTAATTAA+TGG | 0.211786 | 5.2:-68650966 | None:intergenic |
| CACAATGAAGGCATTGATTC+TGG | 0.231325 | 5.2:+68650532 | None:intergenic |
| GCTTACCTTTGTTACCATTA+TGG | 0.253775 | 5.2:-68651329 | None:intergenic |
| TGCATTTCCAGTAGTATTAT+TGG | 0.270402 | 5.2:+68651934 | MS.gene29520:CDS |
| GTTGATGAGCCATCAAAATA+TGG | 0.294988 | 5.2:+68651442 | MS.gene29520:CDS |
| GCATTTCCAGTAGTATTATT+GGG | 0.340951 | 5.2:+68651935 | MS.gene29520:CDS |
| GTGGACGAAACAGCCAAAAT+TGG | 0.347283 | 5.2:+68651796 | MS.gene29520:CDS |
| GCATTGTTGAGTCTGGTGTT+AGG | 0.363709 | 5.2:+68651863 | MS.gene29520:CDS |
| CACTGGCTTGAGGCTTTACC+TGG | 0.369547 | 5.2:+68651708 | MS.gene29520:CDS |
| AAAATATGGGGTGGTTGTTA+TGG | 0.370396 | 5.2:+68651456 | MS.gene29520:CDS |
| GCAAAATCAACAAGAGGCTT+AGG | 0.374674 | 5.2:-68650599 | None:intergenic |
| CTATATGCAATGGTCCTTCC+TGG | 0.379450 | 5.2:+68651649 | MS.gene29520:CDS |
| GGCATTCCACTGTCGGGCAA+TGG | 0.380847 | 5.2:+68651959 | MS.gene29520:CDS |
| CTTCCCCTCCATGGGATTTG+TGG | 0.384607 | 5.2:-68651303 | None:intergenic |
| TGCAAGCATGTTTCTTGATC+CGG | 0.388859 | 5.2:-68651915 | None:intergenic |
| TGAAGGCATTGATTCTGGTT+GGG | 0.402317 | 5.2:+68650537 | MS.gene29520:CDS |
| AATTCAATCATTTCTTTAAG+TGG | 0.409592 | 5.2:-68651280 | None:intergenic |
| ATTTCAGATAGAGGCTCTTA+AGG | 0.411528 | 5.2:+68650916 | MS.gene29520:intron |
| GCATTCCACTGTCGGGCAAT+GGG | 0.416812 | 5.2:+68651960 | MS.gene29520:CDS |
| ATTTGTCTTAATCTCCTTGT+GGG | 0.419610 | 5.2:-68652064 | None:intergenic |
| TCGCAAGAAACTGAACCATT+AGG | 0.421123 | 5.2:+68651163 | MS.gene29520:CDS |
| GCCGGTGGCTCTAACATTGT+GGG | 0.431030 | 5.2:+68651763 | MS.gene29520:CDS |
| CCTGATGTCGCTATCGGTCC+TGG | 0.434526 | 5.2:+68651838 | MS.gene29520:CDS |
| CCTGGCTGCATTGTTGAGTC+TGG | 0.437150 | 5.2:+68651856 | MS.gene29520:CDS |
| CTTTACCTGATGCAGAATCA+TGG | 0.441184 | 5.2:-68650630 | None:intergenic |
| CAAACCCATGATTCTGCATC+AGG | 0.445402 | 5.2:+68650625 | MS.gene29520:CDS |
| ATGCCACCCAATAATACTAC+TGG | 0.456491 | 5.2:-68651941 | None:intergenic |
| GAAGGCATTGATTCTGGTTG+GGG | 0.475018 | 5.2:+68650538 | MS.gene29520:CDS |
| ATTGGCGAGGGATGTCTCAT+TGG | 0.477910 | 5.2:+68651814 | MS.gene29520:CDS |
| GTTGTTATGGAGGAGACAAC+AGG | 0.478358 | 5.2:+68651469 | MS.gene29520:CDS |
| GTTGGTAACAAAATCAATGC+TGG | 0.478891 | 5.2:+68651529 | MS.gene29520:CDS |
| CCAAAACAGAGGGATTCAAT+AGG | 0.480924 | 5.2:-68651558 | None:intergenic |
| GAAGAAGTCTTCTTCGAAGT+TGG | 0.483283 | 5.2:+68651741 | MS.gene29520:CDS |
| GGTTATGTTGAATTTCTTGA+AGG | 0.483467 | 5.2:+68651105 | MS.gene29520:intron |
| ATATGGGGTGGTTGTTATGG+AGG | 0.483471 | 5.2:+68651459 | MS.gene29520:CDS |
| GCACAGTAATGCGAGGAGTC+CGG | 0.487294 | 5.2:+68651896 | MS.gene29520:CDS |
| TTGATGAGCCATCAAAATAT+GGG | 0.488066 | 5.2:+68651443 | MS.gene29520:CDS |
| TTGTTACCAACAAACAACTT+TGG | 0.493157 | 5.2:-68651517 | None:intergenic |
| ATTGGGTGGCATTCCACTGT+CGG | 0.494027 | 5.2:+68651952 | MS.gene29520:CDS |
| ATGAAGGCATTGATTCTGGT+TGG | 0.494195 | 5.2:+68650536 | MS.gene29520:CDS |
| TTATGGAAGCTTCCCCTCCA+TGG | 0.496188 | 5.2:-68651312 | None:intergenic |
| TGGAGGGGAAGCTTCCATAA+TGG | 0.497290 | 5.2:+68651315 | MS.gene29520:CDS |
| TTGGGTGGCATTCCACTGTC+GGG | 0.498250 | 5.2:+68651953 | MS.gene29520:CDS |
| GTGGAGAATATGACTATCCT+TGG | 0.500881 | 5.2:+68651988 | MS.gene29520:CDS |
| TGGAGTCACTGAAGTGGTAC+TGG | 0.502053 | 5.2:+68650943 | MS.gene29520:CDS |
| GGTCCTTCCTGGTTTCTGGA+TGG | 0.503601 | 5.2:+68651660 | MS.gene29520:CDS |
| TTAGGGACACTGAGTGTCAA+TGG | 0.504104 | 5.2:-68650581 | None:intergenic |
| AGACCTCACATGACAATCTC+TGG | 0.504323 | 5.2:-68652096 | None:intergenic |
| TTTACCTGATGCAGAATCAT+GGG | 0.506591 | 5.2:-68650629 | None:intergenic |
| GGCCGGTGGCTCTAACATTG+TGG | 0.507298 | 5.2:+68651762 | MS.gene29520:CDS |
| TATGGAAGCTTCCCCTCCAT+GGG | 0.509917 | 5.2:-68651311 | None:intergenic |
| CAAAATCAACAAGAGGCTTA+GGG | 0.510775 | 5.2:-68650598 | None:intergenic |
| CCAGGACCGATAGCGACATC+AGG | 0.513487 | 5.2:-68651838 | None:intergenic |
| ATAGAGGCTCTTAAGGCGAC+TGG | 0.515685 | 5.2:+68650923 | MS.gene29520:CDS |
| TGTCGGGCAATGGGCTCGAG+TGG | 0.517470 | 5.2:+68651969 | MS.gene29520:CDS |
| CCCCACAATGTTAGAGCCAC+CGG | 0.519548 | 5.2:-68651764 | None:intergenic |
| ATTCAATCATTTCTTTAAGT+GGG | 0.523853 | 5.2:-68651279 | None:intergenic |
| ATTGGACCTGATGTCGCTAT+CGG | 0.527457 | 5.2:+68651832 | MS.gene29520:CDS |
| CAACCGAGGGACTATATCAC+TGG | 0.534394 | 5.2:+68651691 | MS.gene29520:CDS |
| TATTTGTCTTAATCTCCTTG+TGG | 0.538459 | 5.2:-68652065 | None:intergenic |
| AAGTCTTCTTCGAAGTTGGC+CGG | 0.541250 | 5.2:+68651745 | MS.gene29520:CDS |
| TGATCCTCCTTACCTCTGGT+TGG | 0.553108 | 5.2:-68650976 | None:intergenic |
| CCTGGTTTCTGGATGGACAT+CGG | 0.557795 | 5.2:+68651667 | MS.gene29520:CDS |
| ACTGAACCATTAGGAACTGC+AGG | 0.559054 | 5.2:+68651172 | MS.gene29520:CDS |
| TCGAGCCCATTGCCCGACAG+TGG | 0.567442 | 5.2:-68651965 | None:intergenic |
| ACTTCTTCCTCAGTGAGTCC+AGG | 0.572292 | 5.2:-68651726 | None:intergenic |
| GACAAGCTGATAGATGACTC+TGG | 0.573827 | 5.2:+68651214 | MS.gene29520:CDS |
| TTCAATTCGATCCAAAACAG+AGG | 0.573855 | 5.2:-68651569 | None:intergenic |
| CCGATGTCCATCCAGAAACC+AGG | 0.575033 | 5.2:-68651667 | None:intergenic |
| AGGCATTGATTCTGGTTGGG+GGG | 0.577286 | 5.2:+68650540 | MS.gene29520:CDS |
| TCAATTCGATCCAAAACAGA+GGG | 0.579956 | 5.2:-68651568 | None:intergenic |
| CATTGTGGGGAATGTTATTG+TGG | 0.580703 | 5.2:+68651777 | MS.gene29520:CDS |
| ATTGAATTCCACAAATCCCA+TGG | 0.584474 | 5.2:+68651295 | MS.gene29520:CDS |
| AATTCCACAAATCCCATGGA+GGG | 0.587789 | 5.2:+68651299 | MS.gene29520:CDS |
| TATGGAGGAGACAACAGGGC+AGG | 0.589773 | 5.2:+68651474 | MS.gene29520:CDS |
| GCTTGTCCCTAGCAAGAGCA+AGG | 0.593241 | 5.2:-68651198 | None:intergenic |
| AGCTTCCATAATGGTAACAA+AGG | 0.594491 | 5.2:+68651324 | MS.gene29520:CDS |
| TTGTCCCTAGCAAGAGCAAG+GGG | 0.600214 | 5.2:-68651196 | None:intergenic |
| AAGGCATTGATTCTGGTTGG+GGG | 0.602293 | 5.2:+68650539 | MS.gene29520:CDS |
| TTGTTAGCAAAATCAACAAG+AGG | 0.603818 | 5.2:-68650605 | None:intergenic |
| CGAAACAGCCAAAATTGGCG+AGG | 0.610805 | 5.2:+68651801 | MS.gene29520:CDS |
| CCAGACTCAACAATGCAGCC+AGG | 0.618646 | 5.2:-68651856 | None:intergenic |
| TTTGTCTTAATCTCCTTGTG+GGG | 0.619933 | 5.2:-68652063 | None:intergenic |
| CTTGTCCCTAGCAAGAGCAA+GGG | 0.621120 | 5.2:-68651197 | None:intergenic |
| TGTGATGAGATTTACAGCAA+TGG | 0.623004 | 5.2:+68652027 | MS.gene29520:CDS |
| TTTCCAGTAGTATTATTGGG+TGG | 0.628400 | 5.2:+68651938 | MS.gene29520:CDS |
| AAACATGAACATCTTCTCCA+AGG | 0.629278 | 5.2:-68652005 | None:intergenic |
| CCGGTGGCTCTAACATTGTG+GGG | 0.634245 | 5.2:+68651764 | MS.gene29520:CDS |
| TCTTCTTCGAAGTTGGCCGG+TGG | 0.634593 | 5.2:+68651748 | MS.gene29520:CDS |
| AAGCCAGTGATATAGTCCCT+CGG | 0.642817 | 5.2:-68651694 | None:intergenic |
| GGCGACTGGAGTCACTGAAG+TGG | 0.645491 | 5.2:+68650937 | MS.gene29520:CDS |
| GATGGACATCGGACAACCGA+GGG | 0.646783 | 5.2:+68651678 | MS.gene29520:CDS |
| GGGACTATATCACTGGCTTG+AGG | 0.648940 | 5.2:+68651698 | MS.gene29520:CDS |
| ATTCCACAAATCCCATGGAG+GGG | 0.651317 | 5.2:+68651300 | MS.gene29520:CDS |
| TCGCGCTGCACAGTAATGCG+AGG | 0.663076 | 5.2:+68651889 | MS.gene29520:CDS |
| GATTTACAGCAATGGTGGTG+TGG | 0.663263 | 5.2:+68652035 | MS.gene29520:CDS |
| TGATGAGCCATCAAAATATG+GGG | 0.663348 | 5.2:+68651444 | MS.gene29520:CDS |
| GGCCATTAATTACCAACCAG+AGG | 0.667310 | 5.2:+68650964 | MS.gene29520:CDS |
| GGATGGACATCGGACAACCG+AGG | 0.667624 | 5.2:+68651677 | MS.gene29520:CDS |
| TTGTTATGGAGGAGACAACA+GGG | 0.671972 | 5.2:+68651470 | MS.gene29520:CDS |
| GAAACAGCCAAAATTGGCGA+GGG | 0.673370 | 5.2:+68651802 | MS.gene29520:CDS |
| AAGCCAGAGATTGTCATGTG+AGG | 0.678411 | 5.2:+68652093 | MS.gene29520:CDS |
| GGCTTTACCTGGACTCACTG+AGG | 0.679034 | 5.2:+68651719 | MS.gene29520:CDS |
| GAATTCCACAAATCCCATGG+AGG | 0.679237 | 5.2:+68651298 | MS.gene29520:CDS |
| GATGAGATTTACAGCAATGG+TGG | 0.690673 | 5.2:+68652030 | MS.gene29520:CDS |
| TGTCCATCCAGAAACCAGGA+AGG | 0.712182 | 5.2:-68651663 | None:intergenic |
| TGTCCCTAGCAAGAGCAAGG+GGG | 0.727307 | 5.2:-68651195 | None:intergenic |
| TGAGCCATCAAAATATGGGG+TGG | 0.761819 | 5.2:+68651447 | MS.gene29520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAGATATAAAACTTAT+AGG | - | chr5.2:68650674-68650693 | None:intergenic | 15.0% |
| !! | TAACAGATATAAAACTTATA+GGG | - | chr5.2:68650673-68650692 | None:intergenic | 15.0% |
| !!! | AAATTTCTTTATTTTGACTT+TGG | + | chr5.2:68651065-68651084 | MS.gene29520:intron | 15.0% |
| !!! | ATTTAATTTTGCCATATTAA+GGG | - | chr5.2:68650895-68650914 | None:intergenic | 15.0% |
| !!! | GAAGTCATTTAATTTTAAAA+AGG | - | chr5.2:68650798-68650817 | None:intergenic | 15.0% |
| !!! | TGTTTGCATTATTATTTTAT+TGG | - | chr5.2:68651354-68651373 | None:intergenic | 15.0% |
| !! | AATTAAATGATTTCAGATAG+AGG | + | chr5.2:68650907-68650926 | MS.gene29520:intron | 20.0% |
| !! | AATTCAATCATTTCTTTAAG+TGG | - | chr5.2:68651283-68651302 | None:intergenic | 20.0% |
| !! | ATTCAATCATTTCTTTAAGT+GGG | - | chr5.2:68651282-68651301 | None:intergenic | 20.0% |
| !!! | CATTTAATTTTGCCATATTA+AGG | - | chr5.2:68650896-68650915 | None:intergenic | 20.0% |
| !!! | TATTTCTATTTCCCTTAATA+TGG | + | chr5.2:68650881-68650900 | MS.gene29520:intron | 20.0% |
| !!! | TTATGTTCTAGAATATGTTT+GGG | + | chr5.2:68650690-68650709 | MS.gene29520:intron | 20.0% |
| ! | ATCCTTCAAAAACAAAATTG+TGG | + | chr5.2:68651039-68651058 | MS.gene29520:intron | 25.0% |
| ! | GTTCTACACAAATAAAAAAG+TGG | - | chr5.2:68650836-68650855 | None:intergenic | 25.0% |
| ! | TCACTGTTAAGAACAAAAAA+TGG | - | chr5.2:68651244-68651263 | None:intergenic | 25.0% |
| !!! | AATTTCTTTTTCGATAGAAG+TGG | - | chr5.2:68651602-68651621 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTTCGATAGAAGT+GGG | - | chr5.2:68651601-68651620 | None:intergenic | 25.0% |
| !!! | GTTATGTTCTAGAATATGTT+TGG | + | chr5.2:68650689-68650708 | MS.gene29520:intron | 25.0% |
| !!! | TAAAACAGTGTTTTAAGAAG+AGG | - | chr5.2:68651015-68651034 | None:intergenic | 25.0% |
| AATCGAAAATCTGTGTTATG+TGG | - | chr5.2:68650774-68650793 | None:intergenic | 30.0% | |
| AATTCAACATAACCTGAAGT+AGG | - | chr5.2:68651099-68651118 | None:intergenic | 30.0% | |
| AGAGAAAAAGCTATATGCAA+TGG | + | chr5.2:68651639-68651658 | MS.gene29520:CDS | 30.0% | |
| ATTTGTCTTAATCTCCTTGT+GGG | - | chr5.2:68652067-68652086 | None:intergenic | 30.0% | |
| GAAAAACCAAAGTTGTTTGT+TGG | + | chr5.2:68651511-68651530 | MS.gene29520:CDS | 30.0% | |
| GCATTTCCAGTAGTATTATT+GGG | + | chr5.2:68651935-68651954 | MS.gene29520:CDS | 30.0% | |
| GGTTATGTTGAATTTCTTGA+AGG | + | chr5.2:68651105-68651124 | MS.gene29520:intron | 30.0% | |
| TATGCACATAAATACATGAC+AGG | - | chr5.2:68650858-68650877 | None:intergenic | 30.0% | |
| TATTTGTCTTAATCTCCTTG+TGG | - | chr5.2:68652068-68652087 | None:intergenic | 30.0% | |
| TGCATTTCCAGTAGTATTAT+TGG | + | chr5.2:68651934-68651953 | MS.gene29520:CDS | 30.0% | |
| TTGATGAGCCATCAAAATAT+GGG | + | chr5.2:68651443-68651462 | MS.gene29520:CDS | 30.0% | |
| TTGTTACCAACAAACAACTT+TGG | - | chr5.2:68651520-68651539 | None:intergenic | 30.0% | |
| TTGTTAGCAAAATCAACAAG+AGG | - | chr5.2:68650608-68650627 | None:intergenic | 30.0% | |
| !!! | AGCCACAATTTTGTTTTTGA+AGG | - | chr5.2:68651044-68651063 | None:intergenic | 30.0% |
| !!! | ATTTTTTCGTCTACTTGTGT+AGG | + | chr5.2:68651420-68651439 | MS.gene29520:intron | 30.0% |
| AAAATATGGGGTGGTTGTTA+TGG | + | chr5.2:68651456-68651475 | MS.gene29520:CDS | 35.0% | |
| AAACATGAACATCTTCTCCA+AGG | - | chr5.2:68652008-68652027 | None:intergenic | 35.0% | |
| AGCTTCCATAATGGTAACAA+AGG | + | chr5.2:68651324-68651343 | MS.gene29520:CDS | 35.0% | |
| ATTGAATTCCACAAATCCCA+TGG | + | chr5.2:68651295-68651314 | MS.gene29520:CDS | 35.0% | |
| ATTTCAGATAGAGGCTCTTA+AGG | + | chr5.2:68650916-68650935 | MS.gene29520:intron | 35.0% | |
| CAAAATCAACAAGAGGCTTA+GGG | - | chr5.2:68650601-68650620 | None:intergenic | 35.0% | |
| GCTTACCTTTGTTACCATTA+TGG | - | chr5.2:68651332-68651351 | None:intergenic | 35.0% | |
| TCAATTCGATCCAAAACAGA+GGG | - | chr5.2:68651571-68651590 | None:intergenic | 35.0% | |
| TGATGAGCCATCAAAATATG+GGG | + | chr5.2:68651444-68651463 | MS.gene29520:CDS | 35.0% | |
| TGTGATGAGATTTACAGCAA+TGG | + | chr5.2:68652027-68652046 | MS.gene29520:CDS | 35.0% | |
| TGTTGAATGCTTTCTAAACC+CGG | + | chr5.2:68650724-68650743 | MS.gene29520:intron | 35.0% | |
| TTAATTACCAACCAGAGGTA+AGG | + | chr5.2:68650969-68650988 | MS.gene29520:intron | 35.0% | |
| TTCAATTCGATCCAAAACAG+AGG | - | chr5.2:68651572-68651591 | None:intergenic | 35.0% | |
| TTTACCTGATGCAGAATCAT+GGG | - | chr5.2:68650632-68650651 | None:intergenic | 35.0% | |
| TTTCCAGTAGTATTATTGGG+TGG | + | chr5.2:68651938-68651957 | MS.gene29520:CDS | 35.0% | |
| TTTGTCTTAATCTCCTTGTG+GGG | - | chr5.2:68652066-68652085 | None:intergenic | 35.0% | |
| ! | GTTGATGAGCCATCAAAATA+TGG | + | chr5.2:68651442-68651461 | MS.gene29520:CDS | 35.0% |
| ! | TTTTGGATCGAATTGAACTG+AGG | + | chr5.2:68651575-68651594 | MS.gene29520:CDS | 35.0% |
| ! | TTTTTCTCTGCAGCAATCTT+TGG | - | chr5.2:68651628-68651647 | None:intergenic | 35.0% |
| !! | GTTGGTAACAAAATCAATGC+TGG | + | chr5.2:68651529-68651548 | MS.gene29520:CDS | 35.0% |
| !! | TACCTCTGGTTGGTAATTAA+TGG | - | chr5.2:68650969-68650988 | None:intergenic | 35.0% |
| !!! | AAGGATTTTGAAGCAAAGCT+TGG | + | chr5.2:68651124-68651143 | MS.gene29520:CDS | 35.0% |
| AATTCCACAAATCCCATGGA+GGG | + | chr5.2:68651299-68651318 | MS.gene29520:CDS | 40.0% | |
| ATGCCACCCAATAATACTAC+TGG | - | chr5.2:68651944-68651963 | None:intergenic | 40.0% | |
| CATTGTGGGGAATGTTATTG+TGG | + | chr5.2:68651777-68651796 | MS.gene29520:CDS | 40.0% | |
| CCAAAACAGAGGGATTCAAT+AGG | - | chr5.2:68651561-68651580 | None:intergenic | 40.0% | |
| CTTTACCTGATGCAGAATCA+TGG | - | chr5.2:68650633-68650652 | None:intergenic | 40.0% | |
| GAAGAAGTCTTCTTCGAAGT+TGG | + | chr5.2:68651741-68651760 | MS.gene29520:CDS | 40.0% | |
| GATGAGATTTACAGCAATGG+TGG | + | chr5.2:68652030-68652049 | MS.gene29520:CDS | 40.0% | |
| GCAAAATCAACAAGAGGCTT+AGG | - | chr5.2:68650602-68650621 | None:intergenic | 40.0% | |
| GTGGAGAATATGACTATCCT+TGG | + | chr5.2:68651988-68652007 | MS.gene29520:CDS | 40.0% | |
| TCGCAAGAAACTGAACCATT+AGG | + | chr5.2:68651163-68651182 | MS.gene29520:CDS | 40.0% | |
| TGCAAGCATGTTTCTTGATC+CGG | - | chr5.2:68651918-68651937 | None:intergenic | 40.0% | |
| TTGGCAATACTTCCTACTTC+AGG | + | chr5.2:68651084-68651103 | MS.gene29520:intron | 40.0% | |
| TTGTTATGGAGGAGACAACA+GGG | + | chr5.2:68651470-68651489 | MS.gene29520:CDS | 40.0% | |
| ! | AAAGCATCAGAATCAGATGC+CGG | - | chr5.2:68650746-68650765 | None:intergenic | 40.0% |
| ! | CCTATTGAATCCCTCTGTTT+TGG | + | chr5.2:68651558-68651577 | MS.gene29520:CDS | 40.0% |
| !! | ACAACCACCCCATATTTTGA+TGG | - | chr5.2:68651454-68651473 | None:intergenic | 40.0% |
| !! | ATGAAGGCATTGATTCTGGT+TGG | + | chr5.2:68650536-68650555 | MS.gene29520:CDS | 40.0% |
| !! | TGAAGGCATTGATTCTGGTT+GGG | + | chr5.2:68650537-68650556 | MS.gene29520:CDS | 40.0% |
| AAGCATCAGAATCAGATGCC+GGG | - | chr5.2:68650745-68650764 | None:intergenic | 45.0% | |
| AAGCCAGTGATATAGTCCCT+CGG | - | chr5.2:68651697-68651716 | None:intergenic | 45.0% | |
| AAGTCTTCTTCGAAGTTGGC+CGG | + | chr5.2:68651745-68651764 | MS.gene29520:CDS | 45.0% | |
| ACTGAACCATTAGGAACTGC+AGG | + | chr5.2:68651172-68651191 | MS.gene29520:CDS | 45.0% | |
| ATATGGGGTGGTTGTTATGG+AGG | + | chr5.2:68651459-68651478 | MS.gene29520:CDS | 45.0% | |
| ATTACCAACCAGAGGTAAGG+AGG | + | chr5.2:68650972-68650991 | MS.gene29520:intron | 45.0% | |
| ATTCCACAAATCCCATGGAG+GGG | + | chr5.2:68651300-68651319 | MS.gene29520:CDS | 45.0% | |
| ATTGGACCTGATGTCGCTAT+CGG | + | chr5.2:68651832-68651851 | MS.gene29520:CDS | 45.0% | |
| CAAACCCATGATTCTGCATC+AGG | + | chr5.2:68650625-68650644 | MS.gene29520:CDS | 45.0% | |
| CTATATGCAATGGTCCTTCC+TGG | + | chr5.2:68651649-68651668 | MS.gene29520:CDS | 45.0% | |
| GAAACAGCCAAAATTGGCGA+GGG | + | chr5.2:68651802-68651821 | MS.gene29520:CDS | 45.0% | |
| GAATTCCACAAATCCCATGG+AGG | + | chr5.2:68651298-68651317 | MS.gene29520:CDS | 45.0% | |
| GACAAGCTGATAGATGACTC+TGG | + | chr5.2:68651214-68651233 | MS.gene29520:CDS | 45.0% | |
| GCATTGTTGAGTCTGGTGTT+AGG | + | chr5.2:68651863-68651882 | MS.gene29520:CDS | 45.0% | |
| GGCCATTAATTACCAACCAG+AGG | + | chr5.2:68650964-68650983 | MS.gene29520:CDS | 45.0% | |
| GTGGACGAAACAGCCAAAAT+TGG | + | chr5.2:68651796-68651815 | MS.gene29520:CDS | 45.0% | |
| GTTGTTATGGAGGAGACAAC+AGG | + | chr5.2:68651469-68651488 | MS.gene29520:CDS | 45.0% | |
| TGAGCCATCAAAATATGGGG+TGG | + | chr5.2:68651447-68651466 | MS.gene29520:CDS | 45.0% | |
| TTAGGGACACTGAGTGTCAA+TGG | - | chr5.2:68650584-68650603 | None:intergenic | 45.0% | |
| ! | GATTTACAGCAATGGTGGTG+TGG | + | chr5.2:68652035-68652054 | MS.gene29520:CDS | 45.0% |
| !! | AAGGCATTGATTCTGGTTGG+GGG | + | chr5.2:68650539-68650558 | MS.gene29520:CDS | 45.0% |
| !! | GAAGGCATTGATTCTGGTTG+GGG | + | chr5.2:68650538-68650557 | MS.gene29520:CDS | 45.0% |
| ACTTCTTCCTCAGTGAGTCC+AGG | - | chr5.2:68651729-68651748 | None:intergenic | 50.0% | |
| AGTGTGATCCTCCTTACCTC+TGG | - | chr5.2:68650983-68651002 | None:intergenic | 50.0% | |
| ATAGAGGCTCTTAAGGCGAC+TGG | + | chr5.2:68650923-68650942 | MS.gene29520:CDS | 50.0% | |
| ATTGGCGAGGGATGTCTCAT+TGG | + | chr5.2:68651814-68651833 | MS.gene29520:CDS | 50.0% | |
| ATTGGGTGGCATTCCACTGT+CGG | + | chr5.2:68651952-68651971 | MS.gene29520:CDS | 50.0% | |
| CAACCGAGGGACTATATCAC+TGG | + | chr5.2:68651691-68651710 | MS.gene29520:CDS | 50.0% | |
| CAATGGTCCTTCCTGGTTTC+TGG | + | chr5.2:68651656-68651675 | MS.gene29520:CDS | 50.0% | |
| CGAAACAGCCAAAATTGGCG+AGG | + | chr5.2:68651801-68651820 | MS.gene29520:CDS | 50.0% | |
| CTTGTCCCTAGCAAGAGCAA+GGG | - | chr5.2:68651200-68651219 | None:intergenic | 50.0% | |
| TATGGAAGCTTCCCCTCCAT+GGG | - | chr5.2:68651314-68651333 | None:intergenic | 50.0% | |
| TGATCCTCCTTACCTCTGGT+TGG | - | chr5.2:68650979-68650998 | None:intergenic | 50.0% | |
| TGGAGGGGAAGCTTCCATAA+TGG | + | chr5.2:68651315-68651334 | MS.gene29520:CDS | 50.0% | |
| TGGAGTCACTGAAGTGGTAC+TGG | + | chr5.2:68650943-68650962 | MS.gene29520:CDS | 50.0% | |
| TGTCCATCCAGAAACCAGGA+AGG | - | chr5.2:68651666-68651685 | None:intergenic | 50.0% | |
| TTATGGAAGCTTCCCCTCCA+TGG | - | chr5.2:68651315-68651334 | None:intergenic | 50.0% | |
| TTGTCCCTAGCAAGAGCAAG+GGG | - | chr5.2:68651199-68651218 | None:intergenic | 50.0% | |
| ! | CCTGGTTTCTGGATGGACAT+CGG | + | chr5.2:68651667-68651686 | MS.gene29520:CDS | 50.0% |
| ! | GAGACATCCCTCGCCAATTT+TGG | - | chr5.2:68651812-68651831 | None:intergenic | 50.0% |
| ! | TTGATTCTGGTTGGGGGGTT+TGG | + | chr5.2:68650545-68650564 | MS.gene29520:CDS | 50.0% |
| !! | AGGCATTGATTCTGGTTGGG+GGG | + | chr5.2:68650540-68650559 | MS.gene29520:CDS | 50.0% |
| !! | GGGACTATATCACTGGCTTG+AGG | + | chr5.2:68651698-68651717 | MS.gene29520:CDS | 50.0% |
| CCAGACTCAACAATGCAGCC+AGG | - | chr5.2:68651859-68651878 | None:intergenic | 55.0% | |
| CCCCACAATGTTAGAGCCAC+CGG | - | chr5.2:68651767-68651786 | None:intergenic | 55.0% | |
| CCGATGTCCATCCAGAAACC+AGG | - | chr5.2:68651670-68651689 | None:intergenic | 55.0% | |
| CCTGGCTGCATTGTTGAGTC+TGG | + | chr5.2:68651856-68651875 | MS.gene29520:CDS | 55.0% | |
| CTTCCCCTCCATGGGATTTG+TGG | - | chr5.2:68651306-68651325 | None:intergenic | 55.0% | |
| GATGGACATCGGACAACCGA+GGG | + | chr5.2:68651678-68651697 | MS.gene29520:CDS | 55.0% | |
| GCACAGTAATGCGAGGAGTC+CGG | + | chr5.2:68651896-68651915 | MS.gene29520:CDS | 55.0% | |
| GCATTCCACTGTCGGGCAAT+GGG | + | chr5.2:68651960-68651979 | MS.gene29520:CDS | 55.0% | |
| GCTTGTCCCTAGCAAGAGCA+AGG | - | chr5.2:68651201-68651220 | None:intergenic | 55.0% | |
| GGCTTTACCTGGACTCACTG+AGG | + | chr5.2:68651719-68651738 | MS.gene29520:CDS | 55.0% | |
| TATGGAGGAGACAACAGGGC+AGG | + | chr5.2:68651474-68651493 | MS.gene29520:CDS | 55.0% | |
| TCTTCTTCGAAGTTGGCCGG+TGG | + | chr5.2:68651748-68651767 | MS.gene29520:CDS | 55.0% | |
| TGTCCCTAGCAAGAGCAAGG+GGG | - | chr5.2:68651198-68651217 | None:intergenic | 55.0% | |
| TTGGGTGGCATTCCACTGTC+GGG | + | chr5.2:68651953-68651972 | MS.gene29520:CDS | 55.0% | |
| ! | GGGGGTTTGGAACTAGGTTG+AGG | + | chr5.2:68650558-68650577 | MS.gene29520:CDS | 55.0% |
| ! | GGTCCTTCCTGGTTTCTGGA+TGG | + | chr5.2:68651660-68651679 | MS.gene29520:CDS | 55.0% |
| ! | TGGTTGGGGGGTTTGGAACT+AGG | + | chr5.2:68650552-68650571 | MS.gene29520:CDS | 55.0% |
| !! | CACTGGCTTGAGGCTTTACC+TGG | + | chr5.2:68651708-68651727 | MS.gene29520:CDS | 55.0% |
| !! | CCGGTGGCTCTAACATTGTG+GGG | + | chr5.2:68651764-68651783 | MS.gene29520:CDS | 55.0% |
| !! | GCCGGTGGCTCTAACATTGT+GGG | + | chr5.2:68651763-68651782 | MS.gene29520:CDS | 55.0% |
| !! | TGGTGTGGTTTTGCCCCACA+AGG | + | chr5.2:68652050-68652069 | MS.gene29520:CDS | 55.0% |
| AGGCCCCCTTGCTCTTGCTA+GGG | + | chr5.2:68651192-68651211 | MS.gene29520:CDS | 60.0% | |
| AGGGGGCCTGCAGTTCCTAA+TGG | - | chr5.2:68651181-68651200 | None:intergenic | 60.0% | |
| CCAGGACCGATAGCGACATC+AGG | - | chr5.2:68651841-68651860 | None:intergenic | 60.0% | |
| CCTGATGTCGCTATCGGTCC+TGG | + | chr5.2:68651838-68651857 | MS.gene29520:CDS | 60.0% | |
| GGATGGACATCGGACAACCG+AGG | + | chr5.2:68651677-68651696 | MS.gene29520:CDS | 60.0% | |
| GGCATTCCACTGTCGGGCAA+TGG | + | chr5.2:68651959-68651978 | MS.gene29520:CDS | 60.0% | |
| GGCGACTGGAGTCACTGAAG+TGG | + | chr5.2:68650937-68650956 | MS.gene29520:CDS | 60.0% | |
| TCGCGCTGCACAGTAATGCG+AGG | + | chr5.2:68651889-68651908 | MS.gene29520:CDS | 60.0% | |
| !! | GGCCGGTGGCTCTAACATTG+TGG | + | chr5.2:68651762-68651781 | MS.gene29520:CDS | 60.0% |
| CAGGCCCCCTTGCTCTTGCT+AGG | + | chr5.2:68651191-68651210 | MS.gene29520:CDS | 65.0% | |
| TCGAGCCCATTGCCCGACAG+TGG | - | chr5.2:68651968-68651987 | None:intergenic | 65.0% | |
| ! | TGTCGGGCAATGGGCTCGAG+TGG | + | chr5.2:68651969-68651988 | MS.gene29520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 68650536 | 68652113 | 68650536 | ID=MS.gene29520 |
| chr5.2 | mRNA | 68650536 | 68652113 | 68650536 | ID=MS.gene29520.t1;Parent=MS.gene29520 |
| chr5.2 | exon | 68650536 | 68650646 | 68650536 | ID=MS.gene29520.t1.exon1;Parent=MS.gene29520.t1 |
| chr5.2 | CDS | 68650536 | 68650646 | 68650536 | ID=cds.MS.gene29520.t1;Parent=MS.gene29520.t1 |
| chr5.2 | exon | 68650923 | 68650985 | 68650923 | ID=MS.gene29520.t1.exon2;Parent=MS.gene29520.t1 |
| chr5.2 | CDS | 68650923 | 68650985 | 68650923 | ID=cds.MS.gene29520.t1;Parent=MS.gene29520.t1 |
| chr5.2 | exon | 68651106 | 68651345 | 68651106 | ID=MS.gene29520.t1.exon3;Parent=MS.gene29520.t1 |
| chr5.2 | CDS | 68651106 | 68651345 | 68651106 | ID=cds.MS.gene29520.t1;Parent=MS.gene29520.t1 |
| chr5.2 | exon | 68651442 | 68652113 | 68651442 | ID=MS.gene29520.t1.exon4;Parent=MS.gene29520.t1 |
| chr5.2 | CDS | 68651442 | 68652113 | 68651442 | ID=cds.MS.gene29520.t1;Parent=MS.gene29520.t1 |
| Gene Sequence |
| Protein sequence |
