Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene30756 | 0.816369 | 5.73E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene30756 | 0.803153 | 3.99E-49 | -1.69E-46 |
| MS.gene051388 | MS.gene30756 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene30756 | 0.825515 | 4.50E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene30756 | 0.818832 | 1.60E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene30756 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene30756 | 0.819524 | 1.11E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene30756 | 0.809384 | 1.94E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene30756 | 0.827393 | 1.60E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene30756 | 0.802122 | 6.52E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene30756 | 0.820906 | 5.36E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene30756 | 0.806846 | 6.74E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene30756 | -0.817586 | 3.05E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene30756 | 0.812291 | 4.57E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene30756 | 0.805065 | 1.60E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene30756 | 0.811805 | 5.83E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene30756 | 0.825087 | 5.68E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGATCAACAACCTCTTTA+CGG | 0.275420 | 3.1:+60082039 | MS.gene30756:CDS |
| CAATACAACTGAAGCTGGTT+GGG | 0.337736 | 3.1:+60083214 | MS.gene30756:CDS |
| GGCAGGCAGGTTAGCGGCGG+TGG | 0.369344 | 3.1:-60082005 | None:intergenic |
| CTCTGGTGGCGAGAGTGGAT+GGG | 0.381885 | 3.1:+60083142 | MS.gene30756:CDS |
| CCTCTGGTGGCGAGAGTGGA+TGG | 0.397100 | 3.1:+60083141 | MS.gene30756:CDS |
| TGATGAATATCACCCTTTGT+TGG | 0.405213 | 3.1:-60082433 | None:intergenic |
| AGCGACTGGTGGTAAAAGTT+GGG | 0.428689 | 3.1:+60083166 | MS.gene30756:CDS |
| GAGCGACTGGTGGTAAAAGT+TGG | 0.431107 | 3.1:+60083165 | MS.gene30756:CDS |
| GAGAGTGGATGGGGAGCGAC+TGG | 0.447058 | 3.1:+60083152 | MS.gene30756:CDS |
| CCCACCATTGCTGGCAGTTG+TGG | 0.447135 | 3.1:-60083240 | None:intergenic |
| ATTTCCGGACCCACCATTGC+TGG | 0.459789 | 3.1:-60083249 | None:intergenic |
| TGGGTGAACGGAGGGCAGGC+AGG | 0.470687 | 3.1:-60082018 | None:intergenic |
| GGAAGGGAGGACACAAGGAG+AGG | 0.474893 | 3.1:+60083578 | MS.gene30756:CDS |
| GGGTTGTAGATGGTGGGTGG+TGG | 0.482778 | 3.1:+60082397 | MS.gene30756:intron |
| GCAATACAACTGAAGCTGGT+TGG | 0.489541 | 3.1:+60083213 | MS.gene30756:CDS |
| ATCGTGGGTGAACGGAGGGC+AGG | 0.497570 | 3.1:-60082022 | None:intergenic |
| ACTCCCTCTGGTGGCGAGAG+TGG | 0.497770 | 3.1:+60083137 | MS.gene30756:CDS |
| TCTGGTGGCGAGAGTGGATG+GGG | 0.501865 | 3.1:+60083143 | MS.gene30756:CDS |
| ACGGAGGGCAGGCAGGTTAG+CGG | 0.506168 | 3.1:-60082011 | None:intergenic |
| AGTGAGAAAATTCCAACAAA+GGG | 0.506930 | 3.1:+60082421 | MS.gene30756:CDS |
| GAAAGCAATACAACTGAAGC+TGG | 0.511463 | 3.1:+60083209 | MS.gene30756:CDS |
| CGTAAAGAGGTTGTTGATCG+TGG | 0.518315 | 3.1:-60082038 | None:intergenic |
| GAAGGGAGGACACAAGGAGA+GGG | 0.527843 | 3.1:+60083579 | MS.gene30756:CDS |
| GTTGGATGGAGTGCTTCTCA+TGG | 0.541000 | 3.1:+60083104 | MS.gene30756:CDS |
| AATACAACTGAAGCTGGTTG+GGG | 0.541597 | 3.1:+60083215 | MS.gene30756:CDS |
| CCATCCACTCTCGCCACCAG+AGG | 0.568519 | 3.1:-60083141 | None:intergenic |
| GGGAAGAATGAAACTCCCTC+TGG | 0.575224 | 3.1:+60083125 | MS.gene30756:CDS |
| GTTGATCGTGGGTGAACGGA+GGG | 0.578607 | 3.1:-60082026 | None:intergenic |
| GGTTGTTGATCGTGGGTGAA+CGG | 0.580308 | 3.1:-60082030 | None:intergenic |
| GGAAATGGGTTGTAGATGGT+GGG | 0.585344 | 3.1:+60082391 | MS.gene30756:intron |
| CATCCACTCTCGCCACCAGA+GGG | 0.587096 | 3.1:-60083140 | None:intergenic |
| GGTGGTGATAACCTGACGAT+GGG | 0.592107 | 3.1:+60083555 | MS.gene30756:CDS |
| TTGGATGGAGTGCTTCTCAT+GGG | 0.593371 | 3.1:+60083105 | MS.gene30756:CDS |
| GGAGCCACAACTGCCAGCAA+TGG | 0.593774 | 3.1:+60083236 | MS.gene30756:CDS |
| AAGTGAGAAAATTCCAACAA+AGG | 0.609922 | 3.1:+60082420 | MS.gene30756:CDS |
| GAAGGAACAGTACCGTAAAG+AGG | 0.611888 | 3.1:-60082051 | None:intergenic |
| GTGGTGATAACCTGACGATG+GGG | 0.616234 | 3.1:+60083556 | MS.gene30756:CDS |
| GAGGGCAGGCAGGTTAGCGG+CGG | 0.618611 | 3.1:-60082008 | None:intergenic |
| GTAAAGAGGTTGTTGATCGT+GGG | 0.623012 | 3.1:-60082037 | None:intergenic |
| AAGAATGAAACTCCCTCTGG+TGG | 0.630344 | 3.1:+60083128 | MS.gene30756:CDS |
| AGTGGATGGGGAGCGACTGG+TGG | 0.633134 | 3.1:+60083155 | MS.gene30756:CDS |
| TGTTGATCGTGGGTGAACGG+AGG | 0.638967 | 3.1:-60082027 | None:intergenic |
| ACTGGTGGTAAAAGTTGGGG+TGG | 0.644058 | 3.1:+60083170 | MS.gene30756:CDS |
| GCGACTGGTGGTAAAAGTTG+GGG | 0.646093 | 3.1:+60083167 | MS.gene30756:CDS |
| AATGGGTTGTAGATGGTGGG+TGG | 0.657699 | 3.1:+60082394 | MS.gene30756:intron |
| TGGTGGTGATAACCTGACGA+TGG | 0.671545 | 3.1:+60083554 | MS.gene30756:CDS |
| TGGTGATAACCTGACGATGG+GGG | 0.765593 | 3.1:+60083557 | MS.gene30756:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATTGACATAAA+AGG | - | chr3.1:60082155-60082174 | None:intergenic | 10.0% |
| !!! | AAATTAATATTTTTTCTTTG+TGG | + | chr3.1:60082859-60082878 | MS.gene30756:intron | 10.0% |
| !!! | AATTAATATTTTTTCTTTGT+GGG | + | chr3.1:60082860-60082879 | MS.gene30756:intron | 10.0% |
| !!! | AGAAAAAATATTAATTTTGA+TGG | - | chr3.1:60082856-60082875 | None:intergenic | 10.0% |
| !!! | GAAAAAATATTAATTTTGAT+GGG | - | chr3.1:60082855-60082874 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAACTTTTTTAC+TGG | + | chr3.1:60082308-60082327 | MS.gene30756:intron | 10.0% |
| !!! | TCTTTTTTGTTGTTTAAATT+TGG | + | chr3.1:60082211-60082230 | MS.gene30756:intron | 15.0% |
| !!! | TTTCATTTTATTTTGCAAAA+TGG | + | chr3.1:60083459-60083478 | MS.gene30756:intron | 15.0% |
| !!! | TTTTTTTGTTTGATGAATTT+GGG | - | chr3.1:60082891-60082910 | None:intergenic | 15.0% |
| !! | AAAAAATTGTTTGATTGTTC+AGG | - | chr3.1:60082810-60082829 | None:intergenic | 20.0% |
| !! | CAAATTCATCAAACAAAAAA+AGG | + | chr3.1:60082890-60082909 | MS.gene30756:intron | 20.0% |
| !! | TTTGAAGAAAATTTAGAAAG+AGG | + | chr3.1:60082248-60082267 | MS.gene30756:intron | 20.0% |
| !!! | ATATTAATTTTGATGGGAAA+AGG | - | chr3.1:60082849-60082868 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTTTGATGAATT+TGG | - | chr3.1:60082892-60082911 | None:intergenic | 20.0% |
| ! | AAAAGGGAAAAAAAAACCAT+CGG | + | chr3.1:60082643-60082662 | MS.gene30756:intron | 25.0% |
| ! | ATTAGATTGAGATTGAATGT+TGG | + | chr3.1:60082353-60082372 | MS.gene30756:intron | 25.0% |
| ! | TTTGATGGGAAAAATTGTTT+GGG | - | chr3.1:60082709-60082728 | None:intergenic | 25.0% |
| !! | AAAATGGTGATTCAAGTTAT+TGG | + | chr3.1:60083475-60083494 | MS.gene30756:intron | 25.0% |
| !! | ATTGGGAAAAGAAATTTTGA+TGG | - | chr3.1:60082724-60082743 | None:intergenic | 25.0% |
| !! | TTTTGATGGGAAAAATTGTT+TGG | - | chr3.1:60082710-60082729 | None:intergenic | 25.0% |
| !!! | AGTGAATTTTGACTATTGAT+TGG | + | chr3.1:60083520-60083539 | MS.gene30756:intron | 25.0% |
| !!! | TTGGGAAAAGAAATTTTGAT+GGG | - | chr3.1:60082723-60082742 | None:intergenic | 25.0% |
| !!! | TTTTTTACTGGAAAGAGTTT+TGG | + | chr3.1:60082320-60082339 | MS.gene30756:intron | 25.0% |
| AAAATTGTTTGGGTGAATAC+AGG | - | chr3.1:60082699-60082718 | None:intergenic | 30.0% | |
| AAATTCACTTATTACCACCA+AGG | - | chr3.1:60083509-60083528 | None:intergenic | 30.0% | |
| AAGTGAGAAAATTCCAACAA+AGG | + | chr3.1:60082420-60082439 | MS.gene30756:CDS | 30.0% | |
| AGTGAGAAAATTCCAACAAA+GGG | + | chr3.1:60082421-60082440 | MS.gene30756:CDS | 30.0% | |
| CGAGAATAGGATAGTTAAAT+TGG | + | chr3.1:60082280-60082299 | MS.gene30756:intron | 30.0% | |
| CTCTTCTTCTTCAATTATTC+TGG | - | chr3.1:60082974-60082993 | None:intergenic | 30.0% | |
| CTGAAAATGAAAAAGTTGGA+TGG | + | chr3.1:60083090-60083109 | MS.gene30756:CDS | 30.0% | |
| TGATTGGGAAAAGGAAATTT+GGG | - | chr3.1:60082778-60082797 | None:intergenic | 30.0% | |
| TTGAAGAAGAAGAGAAGAAT+TGG | + | chr3.1:60082980-60082999 | MS.gene30756:intron | 30.0% | |
| TTGATGGGAAAAGGAAATTT+GGG | - | chr3.1:60082840-60082859 | None:intergenic | 30.0% | |
| TTTGATGGGAAAAGGAAATT+TGG | - | chr3.1:60082841-60082860 | None:intergenic | 30.0% | |
| ! | GTGATTCAAGTTATTGGAAT+GGG | + | chr3.1:60083481-60083500 | MS.gene30756:intron | 30.0% |
| !! | GAATGAAATTTGCTTTTCCT+CGG | + | chr3.1:60083304-60083323 | MS.gene30756:intron | 30.0% |
| !! | GGCAATTGAAATTTGTTATG+TGG | + | chr3.1:60082911-60082930 | MS.gene30756:intron | 30.0% |
| !!! | ATTTTCAGGTGCATCATTAT+TGG | - | chr3.1:60083078-60083097 | None:intergenic | 30.0% |
| !!! | CATCCAACTTTTTCATTTTC+AGG | - | chr3.1:60083092-60083111 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTCCCTTTTCCCT+CGG | - | chr3.1:60082639-60082658 | None:intergenic | 30.0% |
| AACAAGAAGTGATTGGGAAA+AGG | - | chr3.1:60082787-60082806 | None:intergenic | 35.0% | |
| AAGCAAATTTCATTCTTCCC+AGG | - | chr3.1:60083299-60083318 | None:intergenic | 35.0% | |
| AGATTGAGATTGAATGTTGG+TGG | + | chr3.1:60082356-60082375 | MS.gene30756:intron | 35.0% | |
| CCGAGGAAAATTGAAAACTT+CGG | + | chr3.1:60082603-60082622 | MS.gene30756:intron | 35.0% | |
| CGGAAATGAAAATTCTGGAT+GGG | + | chr3.1:60083265-60083284 | MS.gene30756:intron | 35.0% | |
| GAGGTTTCTTAAACGAGAAT+AGG | + | chr3.1:60082267-60082286 | MS.gene30756:intron | 35.0% | |
| GCACCTGAAAATGAAAAAGT+TGG | + | chr3.1:60083086-60083105 | MS.gene30756:CDS | 35.0% | |
| GGAAATGAAAATTCTGGATG+GGG | + | chr3.1:60083266-60083285 | MS.gene30756:intron | 35.0% | |
| GTGATTGGGAAAAGGAAATT+TGG | - | chr3.1:60082779-60082798 | None:intergenic | 35.0% | |
| TAACTGCCGAATTATGAAAC+CGG | + | chr3.1:60082541-60082560 | MS.gene30756:intron | 35.0% | |
| TGATGAATATCACCCTTTGT+TGG | - | chr3.1:60082436-60082455 | None:intergenic | 35.0% | |
| TGCAAAACCTTGGGTAAATT+AGG | + | chr3.1:60082947-60082966 | MS.gene30756:intron | 35.0% | |
| TGCTGTTCACACATTTAAGA+AGG | - | chr3.1:60083437-60083456 | None:intergenic | 35.0% | |
| TGTTCATGAACACAGTGATT+GGG | - | chr3.1:60082741-60082760 | None:intergenic | 35.0% | |
| TTAACTACCGAGGAAAACTT+CGG | + | chr3.1:60082570-60082589 | MS.gene30756:intron | 35.0% | |
| TTCACACATTTAAGAAGGCT+GGG | - | chr3.1:60083432-60083451 | None:intergenic | 35.0% | |
| TTCAGGAACAAGAAGTGATT+GGG | - | chr3.1:60082793-60082812 | None:intergenic | 35.0% | |
| TTGTTCATGAACACAGTGAT+TGG | - | chr3.1:60082742-60082761 | None:intergenic | 35.0% | |
| ! | ATTTACCCAAGGTTTTGCAA+CGG | - | chr3.1:60082946-60082965 | None:intergenic | 35.0% |
| ! | CCATCCAGAATTTTCATTTC+CGG | - | chr3.1:60083267-60083286 | None:intergenic | 35.0% |
| ! | CCGAAGTTTTCAATTTTCCT+CGG | - | chr3.1:60082606-60082625 | None:intergenic | 35.0% |
| ! | GGTGATTCAAGTTATTGGAA+TGG | + | chr3.1:60083480-60083499 | MS.gene30756:intron | 35.0% |
| ! | TTTGACTATTGATTGGTTGC+TGG | + | chr3.1:60083527-60083546 | MS.gene30756:intron | 35.0% |
| !!! | CTTCAGTTTTGATTGTTGTC+TGG | - | chr3.1:60082187-60082206 | None:intergenic | 35.0% |
| AAACTACCGTTGCAAAACCT+TGG | + | chr3.1:60082937-60082956 | MS.gene30756:intron | 40.0% | |
| AACTACCGTTGCAAAACCTT+GGG | + | chr3.1:60082938-60082957 | MS.gene30756:intron | 40.0% | |
| AAGTGTCTCAACAGTGTATG+AGG | + | chr3.1:60083008-60083027 | MS.gene30756:intron | 40.0% | |
| AATACAACTGAAGCTGGTTG+GGG | + | chr3.1:60083215-60083234 | MS.gene30756:CDS | 40.0% | |
| AGTTATTGGAATGGGAACCT+TGG | + | chr3.1:60083489-60083508 | MS.gene30756:intron | 40.0% | |
| CAATACAACTGAAGCTGGTT+GGG | + | chr3.1:60083214-60083233 | MS.gene30756:CDS | 40.0% | |
| CACGATCAACAACCTCTTTA+CGG | + | chr3.1:60082039-60082058 | MS.gene30756:CDS | 40.0% | |
| CCGGAAATGAAAATTCTGGA+TGG | + | chr3.1:60083264-60083283 | MS.gene30756:intron | 40.0% | |
| GAAAGCAATACAACTGAAGC+TGG | + | chr3.1:60083209-60083228 | MS.gene30756:CDS | 40.0% | |
| GGTTGAGCAAGTAAGGAAAT+GGG | + | chr3.1:60082377-60082396 | MS.gene30756:intron | 40.0% | |
| GTAAAGAGGTTGTTGATCGT+GGG | - | chr3.1:60082040-60082059 | None:intergenic | 40.0% | |
| GTTCACACATTTAAGAAGGC+TGG | - | chr3.1:60083433-60083452 | None:intergenic | 40.0% | |
| GTTCAGGAACAAGAAGTGAT+TGG | - | chr3.1:60082794-60082813 | None:intergenic | 40.0% | |
| TGCTACTCACACATTTGAGA+AGG | + | chr3.1:60082476-60082495 | MS.gene30756:intron | 40.0% | |
| TGGTTGAGCAAGTAAGGAAA+TGG | + | chr3.1:60082376-60082395 | MS.gene30756:intron | 40.0% | |
| TTCTGGTCCTAATTTACCCA+AGG | - | chr3.1:60082957-60082976 | None:intergenic | 40.0% | |
| ! | AAAATACGTTTTTGCCCCCT+CGG | + | chr3.1:60082514-60082533 | MS.gene30756:intron | 40.0% |
| ! | AAAATACGTTTTTGCCCCCT+CGG | - | chr3.1:60082533-60082514 | None:intergenic | 40.0% |
| ! | ACTATTGATTGGTTGCTGGA+AGG | + | chr3.1:60083531-60083550 | MS.gene30756:intron | 40.0% |
| ! | TTAACTGCCGAAGTTTTCCT+CGG | - | chr3.1:60082580-60082599 | None:intergenic | 40.0% |
| !! | GTAAGGAAATGGGTTGTAGA+TGG | + | chr3.1:60082387-60082406 | MS.gene30756:intron | 40.0% |
| !!! | GTATGAGGCTTTTTCACACA+TGG | + | chr3.1:60083023-60083042 | MS.gene30756:intron | 40.0% |
| AAGAATGAAACTCCCTCTGG+TGG | + | chr3.1:60083128-60083147 | MS.gene30756:CDS | 45.0% | |
| ACTCACACATTTGAGAAGGC+TGG | + | chr3.1:60082480-60082499 | MS.gene30756:intron | 45.0% | |
| AGCGACTGGTGGTAAAAGTT+GGG | + | chr3.1:60083166-60083185 | MS.gene30756:CDS | 45.0% | |
| AGTTAACTGCCGAGGGAAAA+GGG | + | chr3.1:60082627-60082646 | MS.gene30756:intron | 45.0% | |
| ATCATTATTGGCAGCTGTGG+AGG | - | chr3.1:60083066-60083085 | None:intergenic | 45.0% | |
| ATTGTCGACGAAGCCAAGAT+CGG | - | chr3.1:60082092-60082111 | None:intergenic | 45.0% | |
| CAAGATCGGAACAGAAGAGT+GGG | - | chr3.1:60082078-60082097 | None:intergenic | 45.0% | |
| CGACAATCGAAAAATCGAGC+TGG | + | chr3.1:60082105-60082124 | MS.gene30756:intron | 45.0% | |
| CGTAAAGAGGTTGTTGATCG+TGG | - | chr3.1:60082041-60082060 | None:intergenic | 45.0% | |
| CTCACACATTTGAGAAGGCT+GGG | + | chr3.1:60082481-60082500 | MS.gene30756:intron | 45.0% | |
| CTGCCGAGGATTTCAAAAAC+CGG | - | chr3.1:60083369-60083388 | None:intergenic | 45.0% | |
| GAAGGAACAGTACCGTAAAG+AGG | - | chr3.1:60082054-60082073 | None:intergenic | 45.0% | |
| GCAATACAACTGAAGCTGGT+TGG | + | chr3.1:60083213-60083232 | MS.gene30756:CDS | 45.0% | |
| GGGTCCGGAAATGAAAATTC+TGG | + | chr3.1:60083260-60083279 | MS.gene30756:intron | 45.0% | |
| TATTGGAATGGGAACCTTGG+TGG | + | chr3.1:60083492-60083511 | MS.gene30756:intron | 45.0% | |
| TGCATCATTATTGGCAGCTG+TGG | - | chr3.1:60083069-60083088 | None:intergenic | 45.0% | |
| TTAACTGCCGAGGAAAACCT+CGG | - | chr3.1:60083340-60083359 | None:intergenic | 45.0% | |
| ! | ATTGATTGGTTGCTGGAAGG+TGG | + | chr3.1:60083534-60083553 | MS.gene30756:intron | 45.0% |
| ! | CTGCAGCCGGTTTCATAATT+CGG | - | chr3.1:60082550-60082569 | None:intergenic | 45.0% |
| ! | TTAACTGCCGAGGTTTTCCT+CGG | + | chr3.1:60083330-60083349 | MS.gene30756:intron | 45.0% |
| ! | TTGGATGGAGTGCTTCTCAT+GGG | + | chr3.1:60083105-60083124 | MS.gene30756:CDS | 45.0% |
| !! | AGGAAATGGGTTGTAGATGG+TGG | + | chr3.1:60082390-60082409 | MS.gene30756:intron | 45.0% |
| !! | GGAAATGGGTTGTAGATGGT+GGG | + | chr3.1:60082391-60082410 | MS.gene30756:intron | 45.0% |
| !! | TGTTGGTGGTTGAGCAAGTA+AGG | + | chr3.1:60082370-60082389 | MS.gene30756:intron | 45.0% |
| !!! | CAGCCGGTTTTTGAAATCCT+CGG | + | chr3.1:60083363-60083382 | MS.gene30756:intron | 45.0% |
| AATTCGGCAGTTAACTGCCG+AGG | - | chr3.1:60082534-60082553 | None:intergenic | 50.0% | |
| ACTGGTGGTAAAAGTTGGGG+TGG | + | chr3.1:60083170-60083189 | MS.gene30756:CDS | 50.0% | |
| ACTTCGGCAGTTAACTACCG+AGG | + | chr3.1:60082586-60082605 | MS.gene30756:intron | 50.0% | |
| ATAACCTGACGATGGGGGAA+GGG | + | chr3.1:60083562-60083581 | MS.gene30756:CDS | 50.0% | |
| ATTCGGCAGTTAACTGCCGA+GGG | - | chr3.1:60082533-60082552 | None:intergenic | 50.0% | |
| CAGTTAACTGCCGAGGGAAA+AGG | + | chr3.1:60082626-60082645 | MS.gene30756:intron | 50.0% | |
| CCAAGATCGGAACAGAAGAG+TGG | - | chr3.1:60082079-60082098 | None:intergenic | 50.0% | |
| CCACTCTTCTGTTCCGATCT+TGG | + | chr3.1:60082076-60082095 | MS.gene30756:intron | 50.0% | |
| GAGCGACTGGTGGTAAAAGT+TGG | + | chr3.1:60083165-60083184 | MS.gene30756:CDS | 50.0% | |
| GCGACTGGTGGTAAAAGTTG+GGG | + | chr3.1:60083167-60083186 | MS.gene30756:CDS | 50.0% | |
| GGGAAGAATGAAACTCCCTC+TGG | + | chr3.1:60083125-60083144 | MS.gene30756:CDS | 50.0% | |
| GGTGGTGATAACCTGACGAT+GGG | + | chr3.1:60083555-60083574 | MS.gene30756:CDS | 50.0% | |
| GGTTGTTGATCGTGGGTGAA+CGG | - | chr3.1:60082033-60082052 | None:intergenic | 50.0% | |
| GTGGTGATAACCTGACGATG+GGG | + | chr3.1:60083556-60083575 | MS.gene30756:CDS | 50.0% | |
| TGGTGATAACCTGACGATGG+GGG | + | chr3.1:60083557-60083576 | MS.gene30756:CDS | 50.0% | |
| TTATTGGCAGCTGTGGAGGA+AGG | - | chr3.1:60083062-60083081 | None:intergenic | 50.0% | |
| ! | GTTGGATGGAGTGCTTCTCA+TGG | + | chr3.1:60083104-60083123 | MS.gene30756:CDS | 50.0% |
| ! | TGGTGGTGATAACCTGACGA+TGG | + | chr3.1:60083554-60083573 | MS.gene30756:CDS | 50.0% |
| !! | AATGGGTTGTAGATGGTGGG+TGG | + | chr3.1:60082394-60082413 | MS.gene30756:intron | 50.0% |
| ACCTCGGCAGTTAACTACCG+AGG | - | chr3.1:60083324-60083343 | None:intergenic | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | + | chr3.1:60082619-60082638 | MS.gene30756:intron | 55.0% | |
| ATTTCCGGACCCACCATTGC+TGG | - | chr3.1:60083252-60083271 | None:intergenic | 55.0% | |
| CCACAACTGCCAGCAATGGT+GGG | + | chr3.1:60083240-60083259 | MS.gene30756:intron | 55.0% | |
| CCTCGGTAGTTAACTGCAGC+CGG | - | chr3.1:60082563-60082582 | None:intergenic | 55.0% | |
| CTTCGGCAGTTAACTGCCGA+GGG | + | chr3.1:60082620-60082639 | MS.gene30756:intron | 55.0% | |
| GAAGGGAGGACACAAGGAGA+GGG | + | chr3.1:60083579-60083598 | MS.gene30756:CDS | 55.0% | |
| GATAACCTGACGATGGGGGA+AGG | + | chr3.1:60083561-60083580 | MS.gene30756:CDS | 55.0% | |
| GTTGATCGTGGGTGAACGGA+GGG | - | chr3.1:60082029-60082048 | None:intergenic | 55.0% | |
| TCCTCGGTAGTTAACTGCCG+AGG | + | chr3.1:60083320-60083339 | MS.gene30756:intron | 55.0% | |
| TGTTGATCGTGGGTGAACGG+AGG | - | chr3.1:60082030-60082049 | None:intergenic | 55.0% | |
| TTCGGCAGTTAACTGCCGAG+GGG | - | chr3.1:60082640-60082621 | None:intergenic | 55.0% | |
| ! | CCATCGGCACTTAAGTGTCG+AGG | + | chr3.1:60082659-60082678 | MS.gene30756:intron | 55.0% |
| ! | GATTGGTTGCTGGAAGGTGG+TGG | + | chr3.1:60083537-60083556 | MS.gene30756:intron | 55.0% |
| !! | CCTCGACACTTAAGTGCCGA+TGG | - | chr3.1:60082662-60082681 | None:intergenic | 55.0% |
| ATGGGGGAAGGGAGGACACA+AGG | + | chr3.1:60083573-60083592 | MS.gene30756:CDS | 60.0% | |
| CATCCACTCTCGCCACCAGA+GGG | - | chr3.1:60083143-60083162 | None:intergenic | 60.0% | |
| CCCACCATTGCTGGCAGTTG+TGG | - | chr3.1:60083243-60083262 | None:intergenic | 60.0% | |
| CCGGCTGCAGTTAACTACCG+AGG | + | chr3.1:60082560-60082579 | MS.gene30756:intron | 60.0% | |
| CCTCGGCAGTTAACTGCAGC+CGG | + | chr3.1:60083347-60083366 | MS.gene30756:intron | 60.0% | |
| CCTCGGCAGTTAACTGCCGA+GGG | + | chr3.1:60082531-60082550 | MS.gene30756:intron | 60.0% | |
| CGGAACAGAAGAGTGGGCGA+AGG | - | chr3.1:60082072-60082091 | None:intergenic | 60.0% | |
| CTCGGCAGTTAACTGCCGAG+GGG | + | chr3.1:60083381-60083400 | MS.gene30756:intron | 60.0% | |
| GCCACAACTGCCAGCAATGG+TGG | + | chr3.1:60083239-60083258 | MS.gene30756:intron | 60.0% | |
| GGAAGGGAGGACACAAGGAG+AGG | + | chr3.1:60083578-60083597 | MS.gene30756:CDS | 60.0% | |
| GGAGCCACAACTGCCAGCAA+TGG | + | chr3.1:60083236-60083255 | MS.gene30756:CDS | 60.0% | |
| TCCTCGGCAGTTAACTGCCG+AGG | + | chr3.1:60083379-60083398 | MS.gene30756:intron | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | + | chr3.1:60082622-60082641 | MS.gene30756:intron | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | - | chr3.1:60082641-60082622 | None:intergenic | 60.0% | |
| TGGCAGCTGTGGAGGAAGGT+TGG | - | chr3.1:60083058-60083077 | None:intergenic | 60.0% | |
| ! | CTCTGGTGGCGAGAGTGGAT+GGG | + | chr3.1:60083142-60083161 | MS.gene30756:CDS | 60.0% |
| ! | TCTGGTGGCGAGAGTGGATG+GGG | + | chr3.1:60083143-60083162 | MS.gene30756:CDS | 60.0% |
| !! | ACTGCCAGCAATGGTGGGTC+CGG | + | chr3.1:60083245-60083264 | MS.gene30756:intron | 60.0% |
| !! | GGGTTGTAGATGGTGGGTGG+TGG | + | chr3.1:60082397-60082416 | MS.gene30756:intron | 60.0% |
| ACCTGACGATGGGGGAAGGG+AGG | + | chr3.1:60083565-60083584 | MS.gene30756:CDS | 65.0% | |
| ACGGAGGGCAGGCAGGTTAG+CGG | - | chr3.1:60082014-60082033 | None:intergenic | 65.0% | |
| AGTGGATGGGGAGCGACTGG+TGG | + | chr3.1:60083155-60083174 | MS.gene30756:CDS | 65.0% | |
| ATCGTGGGTGAACGGAGGGC+AGG | - | chr3.1:60082025-60082044 | None:intergenic | 65.0% | |
| CCATCCACTCTCGCCACCAG+AGG | - | chr3.1:60083144-60083163 | None:intergenic | 65.0% | |
| CCCTCGGCAGTTAACTGCCG+AGG | - | chr3.1:60082549-60082530 | None:intergenic | 65.0% | |
| CCGGCTGCAGTTAACTGCCG+AGG | - | chr3.1:60083350-60083369 | None:intergenic | 65.0% | |
| GAGAGTGGATGGGGAGCGAC+TGG | + | chr3.1:60083152-60083171 | MS.gene30756:CDS | 65.0% | |
| TCCTCCCTTCCCCCATCGTC+AGG | - | chr3.1:60083569-60083588 | None:intergenic | 65.0% | |
| ! | ACTCCCTCTGGTGGCGAGAG+TGG | + | chr3.1:60083137-60083156 | MS.gene30756:CDS | 65.0% |
| ! | CCTCTGGTGGCGAGAGTGGA+TGG | + | chr3.1:60083141-60083160 | MS.gene30756:CDS | 65.0% |
| !! | CTGGATGGGGTGCTGCTCCT+GGG | + | chr3.1:60083279-60083298 | MS.gene30756:intron | 65.0% |
| !! | TCTGGATGGGGTGCTGCTCC+TGG | + | chr3.1:60083278-60083297 | MS.gene30756:intron | 65.0% |
| GAGGGCAGGCAGGTTAGCGG+CGG | - | chr3.1:60082011-60082030 | None:intergenic | 70.0% | |
| TGGGTGAACGGAGGGCAGGC+AGG | - | chr3.1:60082021-60082040 | None:intergenic | 70.0% | |
| GGCAGGCAGGTTAGCGGCGG+TGG | - | chr3.1:60082008-60082027 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 60082001 | 60083608 | 60082001 | ID=MS.gene30756 |
| chr3.1 | mRNA | 60082001 | 60083608 | 60082001 | ID=MS.gene30756.t1;Parent=MS.gene30756 |
| chr3.1 | exon | 60082001 | 60082060 | 60082001 | ID=MS.gene30756.t1.exon1;Parent=MS.gene30756.t1 |
| chr3.1 | CDS | 60082001 | 60082060 | 60082001 | ID=cds.MS.gene30756.t1;Parent=MS.gene30756.t1 |
| chr3.1 | exon | 60082406 | 60082442 | 60082406 | ID=MS.gene30756.t1.exon2;Parent=MS.gene30756.t1 |
| chr3.1 | CDS | 60082406 | 60082442 | 60082406 | ID=cds.MS.gene30756.t1;Parent=MS.gene30756.t1 |
| chr3.1 | exon | 60083072 | 60083257 | 60083072 | ID=MS.gene30756.t1.exon3;Parent=MS.gene30756.t1 |
| chr3.1 | CDS | 60083072 | 60083257 | 60083072 | ID=cds.MS.gene30756.t1;Parent=MS.gene30756.t1 |
| chr3.1 | exon | 60083553 | 60083608 | 60083553 | ID=MS.gene30756.t1.exon4;Parent=MS.gene30756.t1 |
| chr3.1 | CDS | 60083553 | 60083608 | 60083553 | ID=cds.MS.gene30756.t1;Parent=MS.gene30756.t1 |
| Gene Sequence |
| Protein sequence |
