Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30760.t1 | XP_003601118.1 | 97.4 | 313 | 8 | 0 | 1 | 313 | 1 | 313 | 9.30E-174 | 619.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30760.t1 | G7J3N5 | 97.4 | 313 | 8 | 0 | 1 | 313 | 1 | 313 | 6.7e-174 | 619.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene30760 | 0.83881 | 2.31E-57 | -1.69E-46 |
| MS.gene050085 | MS.gene30760 | 0.846625 | 1.93E-59 | -1.69E-46 |
| MS.gene050116 | MS.gene30760 | 0.823312 | 1.48E-53 | -1.69E-46 |
| MS.gene050359 | MS.gene30760 | 0.819806 | 9.57E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene30760 | 0.809246 | 2.08E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene30760 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene051381 | MS.gene30760 | 0.815143 | 1.08E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene30760 | -0.831507 | 1.60E-55 | -1.69E-46 |
| MS.gene052776 | MS.gene30760 | 0.806372 | 8.49E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene30760 | 0.811633 | 6.35E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene30760 | 0.81817 | 2.25E-52 | -1.69E-46 |
| MS.gene056097 | MS.gene30760 | 0.854872 | 9.22E-62 | -1.69E-46 |
| MS.gene05615 | MS.gene30760 | 0.805718 | 1.17E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene30760 | 0.818916 | 1.53E-52 | -1.69E-46 |
| MS.gene058638 | MS.gene30760 | 0.801162 | 1.03E-48 | -1.69E-46 |
| MS.gene059007 | MS.gene30760 | 0.86304 | 3.31E-64 | -1.69E-46 |
| MS.gene060563 | MS.gene30760 | 0.833604 | 4.85E-56 | -1.69E-46 |
| MS.gene061006 | MS.gene30760 | 0.807068 | 6.05E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30760.t1 | MTR_3g073240 | 97.444 | 313 | 8 | 0 | 1 | 313 | 1 | 313 | 0.0 | 634 |
| MS.gene30760.t1 | MTR_4g094420 | 54.545 | 253 | 101 | 5 | 1 | 245 | 1 | 247 | 5.84e-87 | 265 |
| MS.gene30760.t1 | MTR_7g059110 | 43.750 | 224 | 83 | 2 | 48 | 230 | 24 | 245 | 2.40e-58 | 191 |
| MS.gene30760.t1 | MTR_4g113730 | 38.696 | 230 | 100 | 2 | 43 | 232 | 43 | 271 | 6.69e-49 | 167 |
| MS.gene30760.t1 | MTR_1g009790 | 40.000 | 205 | 117 | 2 | 23 | 227 | 1 | 199 | 3.78e-48 | 164 |
| MS.gene30760.t1 | MTR_8g085870 | 39.394 | 231 | 122 | 3 | 1 | 219 | 1 | 225 | 8.35e-48 | 166 |
| MS.gene30760.t1 | MTR_1g009790 | 40.000 | 205 | 117 | 2 | 23 | 227 | 1 | 199 | 1.08e-47 | 163 |
| MS.gene30760.t1 | MTR_7g059110 | 57.522 | 113 | 48 | 0 | 118 | 230 | 170 | 282 | 5.94e-38 | 139 |
| MS.gene30760.t1 | MTR_7g059110 | 46.591 | 88 | 41 | 2 | 48 | 129 | 24 | 111 | 7.38e-16 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30760.t1 | AT4G08460 | 62.051 | 195 | 52 | 2 | 34 | 228 | 33 | 205 | 2.69e-83 | 253 |
| MS.gene30760.t1 | AT4G08460 | 62.051 | 195 | 52 | 2 | 34 | 228 | 33 | 205 | 2.69e-83 | 253 |
| MS.gene30760.t1 | AT4G08460 | 62.051 | 195 | 52 | 2 | 34 | 228 | 33 | 205 | 2.69e-83 | 253 |
| MS.gene30760.t1 | AT4G08460 | 62.051 | 195 | 52 | 2 | 34 | 228 | 33 | 205 | 2.69e-83 | 253 |
| MS.gene30760.t1 | AT1G77770 | 52.609 | 230 | 69 | 4 | 4 | 233 | 1 | 190 | 7.43e-75 | 231 |
| MS.gene30760.t1 | AT1G77770 | 52.609 | 230 | 69 | 4 | 4 | 233 | 1 | 190 | 9.14e-75 | 231 |
| MS.gene30760.t1 | AT1G77770 | 52.609 | 230 | 69 | 4 | 4 | 233 | 1 | 190 | 9.14e-75 | 231 |
| MS.gene30760.t1 | AT1G68140 | 54.639 | 194 | 73 | 2 | 37 | 230 | 42 | 220 | 5.03e-72 | 225 |
| MS.gene30760.t1 | AT1G68140 | 54.639 | 194 | 73 | 2 | 37 | 230 | 42 | 220 | 5.34e-72 | 226 |
| MS.gene30760.t1 | AT1G68140 | 54.639 | 194 | 73 | 2 | 37 | 230 | 42 | 220 | 5.34e-72 | 226 |
| MS.gene30760.t1 | AT1G68140 | 54.639 | 194 | 73 | 2 | 37 | 230 | 42 | 220 | 5.34e-72 | 226 |
| MS.gene30760.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 43 | 231 | 19 | 241 | 1.56e-53 | 179 |
| MS.gene30760.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 43 | 231 | 19 | 241 | 1.56e-53 | 179 |
| MS.gene30760.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 43 | 231 | 19 | 241 | 1.56e-53 | 179 |
| MS.gene30760.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 43 | 231 | 19 | 241 | 1.56e-53 | 179 |
| MS.gene30760.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 43 | 231 | 19 | 241 | 1.56e-53 | 179 |
| MS.gene30760.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 43 | 231 | 19 | 241 | 1.56e-53 | 179 |
| MS.gene30760.t1 | AT4G31410 | 40.092 | 217 | 108 | 5 | 44 | 257 | 28 | 225 | 6.52e-47 | 160 |
| MS.gene30760.t1 | AT4G31410 | 40.092 | 217 | 108 | 5 | 44 | 257 | 28 | 225 | 6.52e-47 | 160 |
| MS.gene30760.t1 | AT4G31410 | 40.092 | 217 | 108 | 5 | 44 | 257 | 28 | 225 | 6.52e-47 | 160 |
| MS.gene30760.t1 | AT3G25910 | 36.325 | 234 | 96 | 2 | 43 | 223 | 36 | 269 | 3.14e-43 | 152 |
| MS.gene30760.t1 | AT1G15430 | 34.762 | 210 | 107 | 4 | 5 | 210 | 6 | 189 | 4.81e-35 | 128 |
| MS.gene30760.t1 | AT1G15430 | 34.762 | 210 | 107 | 4 | 5 | 210 | 6 | 189 | 4.81e-35 | 128 |
| MS.gene30760.t1 | AT1G80220 | 30.714 | 280 | 157 | 7 | 1 | 279 | 1 | 244 | 4.84e-35 | 128 |
| MS.gene30760.t1 | AT2G26050 | 32.624 | 141 | 70 | 2 | 70 | 209 | 38 | 154 | 3.32e-20 | 87.8 |
Find 79 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGTTCTGCTGCTCTTTC+TGG | 0.086227 | 3.1:-60041100 | MS.gene30760:CDS |
| ACTGATTCTGATGATGAATT+TGG | 0.163731 | 3.1:-60041238 | MS.gene30760:CDS |
| CTATGCCTCCGTCGTCTTCT+AGG | 0.214329 | 3.1:+60041046 | None:intergenic |
| CGGCTAGTAGCACACATATA+AGG | 0.248105 | 3.1:+60041730 | None:intergenic |
| CTAGCACAAGATAAAAGATA+TGG | 0.288835 | 3.1:+60041892 | None:intergenic |
| TCTTGCCATTCAGAGACTTC+CGG | 0.294090 | 3.1:+60041512 | None:intergenic |
| TTCTTCGGCTCCATTGGTTT+GGG | 0.298539 | 3.1:-60041199 | MS.gene30760:CDS |
| CTTGCCATTCAGAGACTTCC+GGG | 0.300913 | 3.1:+60041513 | None:intergenic |
| TTTCTTCGGCTCCATTGGTT+TGG | 0.320053 | 3.1:-60041200 | MS.gene30760:CDS |
| CTGATTCTGATGATGAATTT+GGG | 0.329708 | 3.1:-60041237 | MS.gene30760:CDS |
| TTTCCTTGTGACCTCGAGAT+TGG | 0.332101 | 3.1:+60041917 | None:intergenic |
| GTGGTACTGGCAGCTTTATC+AGG | 0.366519 | 3.1:-60041177 | MS.gene30760:CDS |
| CTTTCACCTGTCGGCGGCAA+AGG | 0.373229 | 3.1:+60041557 | None:intergenic |
| TCCATTGGTTTGGGTGGTAC+TGG | 0.373732 | 3.1:-60041190 | MS.gene30760:CDS |
| TTCCTTGTGACCTCGAGATT+GGG | 0.384905 | 3.1:+60041918 | None:intergenic |
| CTGTATAATCCACGGTCATT+TGG | 0.390948 | 3.1:+60041268 | None:intergenic |
| GGTGATTTCTTCGGCTCCAT+TGG | 0.401886 | 3.1:-60041205 | MS.gene30760:CDS |
| GGCTAGTAGCACACATATAA+GGG | 0.411650 | 3.1:+60041731 | None:intergenic |
| TAGCACAAGATAAAAGATAT+GGG | 0.419897 | 3.1:+60041893 | None:intergenic |
| TTTCGGAGTGGTGCATCTAC+AGG | 0.420225 | 3.1:-60041118 | MS.gene30760:CDS |
| TTTCACCTGTCGGCGGCAAA+GGG | 0.426605 | 3.1:+60041558 | None:intergenic |
| AGTATTTAAATGGCTAAAGT+TGG | 0.427830 | 3.1:-60041958 | None:intergenic |
| GAGGATGATGGTGATTTCTT+CGG | 0.432897 | 3.1:-60041214 | MS.gene30760:CDS |
| TTGTCCCCTTTGCCGCCGAC+AGG | 0.433551 | 3.1:-60041563 | MS.gene30760:CDS |
| TGCTACCTGCTCAGTCTGTA+TGG | 0.441789 | 3.1:-60041809 | MS.gene30760:CDS |
| CGGGGAGTTACAAGGAGCTT+AGG | 0.444681 | 3.1:-60041456 | MS.gene30760:CDS |
| CCAAAGTCATCGACATCAAA+AGG | 0.453118 | 3.1:+60041142 | None:intergenic |
| AACTCCAGGAGCTATGGTAC+TGG | 0.457705 | 3.1:-60041308 | MS.gene30760:CDS |
| ACTTCTCGTGGTCGCGAACA+TGG | 0.461952 | 3.1:+60041412 | None:intergenic |
| GTCTTCAACTCCAGGAGCTA+TGG | 0.467465 | 3.1:-60041314 | MS.gene30760:CDS |
| GAGGAGTAGGATAGCATTGT+GGG | 0.468661 | 3.1:+60041780 | None:intergenic |
| AAGCGGTAGAAAAGAAAGAT+TGG | 0.472915 | 3.1:-60041837 | MS.gene30760:CDS |
| CAAAGGGGACAAAGAAGCTC+AGG | 0.485626 | 3.1:+60041574 | None:intergenic |
| TCTGCTGCTCTTTCTGGACG+TGG | 0.489978 | 3.1:-60041094 | MS.gene30760:CDS |
| ACTCCAGGAGCTATGGTACT+GGG | 0.514732 | 3.1:-60041307 | MS.gene30760:CDS |
| CTAGAAGACGACGGAGGCAT+AGG | 0.517476 | 3.1:-60041045 | MS.gene30760:CDS |
| CTTTGCCGCCGACAGGTGAA+AGG | 0.519049 | 3.1:-60041556 | MS.gene30760:CDS |
| ATGTTCGCGACCACGAGAAG+TGG | 0.522683 | 3.1:-60041410 | MS.gene30760:CDS |
| TTCGGCTCCATTGGTTTGGG+TGG | 0.524118 | 3.1:-60041196 | MS.gene30760:CDS |
| AGGCATAGGGTACTGAATGC+TGG | 0.551130 | 3.1:-60041031 | MS.gene30760:CDS |
| CCTCTGTTCATCGTATAACA+AGG | 0.553685 | 3.1:-60041761 | MS.gene30760:CDS |
| TTTCTGGACGTGGATTCCAC+AGG | 0.555472 | 3.1:-60041084 | MS.gene30760:CDS |
| AATTTGAGTGTGAAAGAGAA+CGG | 0.560666 | 3.1:-60041360 | MS.gene30760:CDS |
| GTCCCAATCTCGAGGTCACA+AGG | 0.563412 | 3.1:-60041920 | MS.gene30760:CDS |
| TAGAAGACGACGGAGGCATA+GGG | 0.563527 | 3.1:-60041044 | MS.gene30760:CDS |
| GGACTGTGGTTGAAGCAGCC+CGG | 0.563979 | 3.1:-60041531 | MS.gene30760:CDS |
| GATGAATTTGGGGAGGATGA+TGG | 0.566776 | 3.1:-60041226 | MS.gene30760:CDS |
| GCCGCCGACAGGTGAAAGGT+TGG | 0.568951 | 3.1:-60041552 | MS.gene30760:CDS |
| GCCAGTACCACCCAAACCAA+TGG | 0.572874 | 3.1:+60041189 | None:intergenic |
| TGGATTCCACAGGATACTGT+TGG | 0.574386 | 3.1:-60041074 | MS.gene30760:CDS |
| GTCTTTCCAACAGTATCCTG+TGG | 0.591460 | 3.1:+60041068 | None:intergenic |
| AGAGGAGTAGGATAGCATTG+TGG | 0.593867 | 3.1:+60041779 | None:intergenic |
| CAGTCCAACCTTTCACCTGT+CGG | 0.596695 | 3.1:+60041548 | None:intergenic |
| AACCTCCATACAGACTGAGC+AGG | 0.601071 | 3.1:+60041804 | None:intergenic |
| GCAGCCCGGAAGTCTCTGAA+TGG | 0.601426 | 3.1:-60041517 | MS.gene30760:CDS |
| AAAAGAAGCTGTATGCAAGA+TGG | 0.602513 | 3.1:-60041490 | MS.gene30760:CDS |
| TATACGATGAACAGAGGAGT+AGG | 0.603641 | 3.1:+60041767 | None:intergenic |
| CTCCAGGAGCTATGGTACTG+GGG | 0.607503 | 3.1:-60041306 | MS.gene30760:CDS |
| ATAGGGTACTGAATGCTGGC+CGG | 0.616066 | 3.1:-60041027 | MS.gene30760:CDS |
| TCCAGGAGCTATGGTACTGG+GGG | 0.617378 | 3.1:-60041305 | MS.gene30760:CDS |
| AGCACAAGATAAAAGATATG+GGG | 0.621741 | 3.1:+60041894 | None:intergenic |
| TGGCTAAAGTTGGCAAGATG+CGG | 0.627681 | 3.1:-60041948 | MS.gene30760:CDS |
| CAAAACAGTTAGAATAGCGA+CGG | 0.627893 | 3.1:+60041710 | None:intergenic |
| TCCAACCTTTCACCTGTCGG+CGG | 0.644382 | 3.1:+60041551 | None:intergenic |
| TGATTCTGATGATGAATTTG+GGG | 0.645133 | 3.1:-60041236 | MS.gene30760:CDS |
| TACCTGCTCAGTCTGTATGG+AGG | 0.645194 | 3.1:-60041806 | MS.gene30760:CDS |
| CTCTGTTCATCGTATAACAA+GGG | 0.645683 | 3.1:-60041760 | MS.gene30760:CDS |
| CGTACAGGGTCCACTTCTCG+TGG | 0.645791 | 3.1:+60041400 | None:intergenic |
| TTCACCTGTCGGCGGCAAAG+GGG | 0.648214 | 3.1:+60041559 | None:intergenic |
| TTCTGATGATGAATTTGGGG+AGG | 0.654732 | 3.1:-60041233 | MS.gene30760:CDS |
| TTTCGTCGCTGTATAATCCA+CGG | 0.656197 | 3.1:+60041260 | None:intergenic |
| CGGTGCAAGTCCCAATCTCG+AGG | 0.662801 | 3.1:-60041928 | MS.gene30760:CDS |
| GTAGAAAAGAAAGATTGGAA+AGG | 0.684023 | 3.1:-60041832 | MS.gene30760:CDS |
| GTGCTCGAGCCAAATGACCG+TGG | 0.685398 | 3.1:-60041277 | MS.gene30760:CDS |
| CCTTGTTATACGATGAACAG+AGG | 0.702851 | 3.1:+60041761 | None:intergenic |
| TGGAAAGACCTAGAAGACGA+CGG | 0.711922 | 3.1:-60041054 | MS.gene30760:CDS |
| AGGAGTAGGATAGCATTGTG+GGG | 0.724984 | 3.1:+60041781 | None:intergenic |
| ACAGGTGAAAGGTTGGACTG+TGG | 0.742392 | 3.1:-60041545 | MS.gene30760:CDS |
| AAAGACCTAGAAGACGACGG+AGG | 0.779006 | 3.1:-60041051 | MS.gene30760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATGAAAAATGTCAAG+AGG | - | chr3.1:60041106-60041125 | MS.gene30760:CDS | 20.0% |
| ! | TAGCACAAGATAAAAGATAT+GGG | + | chr3.1:60041083-60041102 | None:intergenic | 25.0% |
| !!! | CTGTTTTGAACAGTATAAAA+AGG | - | chr3.1:60041278-60041297 | MS.gene30760:CDS | 25.0% |
| !!! | TCGAATTTTGATTCTAATTC+TGG | - | chr3.1:60041351-60041370 | MS.gene30760:CDS | 25.0% |
| AATTTGAGTGTGAAAGAGAA+CGG | - | chr3.1:60041613-60041632 | MS.gene30760:CDS | 30.0% | |
| AGCACAAGATAAAAGATATG+GGG | + | chr3.1:60041082-60041101 | None:intergenic | 30.0% | |
| CTAGCACAAGATAAAAGATA+TGG | + | chr3.1:60041084-60041103 | None:intergenic | 30.0% | |
| GTAGAAAAGAAAGATTGGAA+AGG | - | chr3.1:60041141-60041160 | MS.gene30760:CDS | 30.0% | |
| ! | ACTGATTCTGATGATGAATT+TGG | - | chr3.1:60041735-60041754 | MS.gene30760:CDS | 30.0% |
| ! | CTGATTCTGATGATGAATTT+GGG | - | chr3.1:60041736-60041755 | MS.gene30760:CDS | 30.0% |
| ! | TGATTCTGATGATGAATTTG+GGG | - | chr3.1:60041737-60041756 | MS.gene30760:CDS | 30.0% |
| AAAAGAAGCTGTATGCAAGA+TGG | - | chr3.1:60041483-60041502 | MS.gene30760:CDS | 35.0% | |
| AAGCGGTAGAAAAGAAAGAT+TGG | - | chr3.1:60041136-60041155 | MS.gene30760:CDS | 35.0% | |
| CAAAACAGTTAGAATAGCGA+CGG | + | chr3.1:60041266-60041285 | None:intergenic | 35.0% | |
| CTCTGTTCATCGTATAACAA+GGG | - | chr3.1:60041213-60041232 | MS.gene30760:CDS | 35.0% | |
| ! | ACAATTTTGTCTTCAACTCC+AGG | - | chr3.1:60041651-60041670 | MS.gene30760:CDS | 35.0% |
| !! | TCCATTTTTCTTCTCGTACA+GGG | + | chr3.1:60041590-60041609 | None:intergenic | 35.0% |
| !! | TGTCAAGAGGTTTTCTAAAG+CGG | - | chr3.1:60041119-60041138 | MS.gene30760:CDS | 35.0% |
| !! | TTCCATTTTTCTTCTCGTAC+AGG | + | chr3.1:60041591-60041610 | None:intergenic | 35.0% |
| !!! | ATGTCGATGACTTTGGTTTT+CGG | - | chr3.1:60041838-60041857 | MS.gene30760:CDS | 35.0% |
| ACCCTGTACGAGAAGAAAAA+TGG | - | chr3.1:60041586-60041605 | MS.gene30760:CDS | 40.0% | |
| CCAAAGTCATCGACATCAAA+AGG | + | chr3.1:60041834-60041853 | None:intergenic | 40.0% | |
| CCTCTGTTCATCGTATAACA+AGG | - | chr3.1:60041212-60041231 | MS.gene30760:CDS | 40.0% | |
| CTGTATAATCCACGGTCATT+TGG | + | chr3.1:60041708-60041727 | None:intergenic | 40.0% | |
| GGCTAGTAGCACACATATAA+GGG | + | chr3.1:60041245-60041264 | None:intergenic | 40.0% | |
| TATACGATGAACAGAGGAGT+AGG | + | chr3.1:60041209-60041228 | None:intergenic | 40.0% | |
| TTTCGTCGCTGTATAATCCA+CGG | + | chr3.1:60041716-60041735 | None:intergenic | 40.0% | |
| ! | CCTTGTTATACGATGAACAG+AGG | + | chr3.1:60041215-60041234 | None:intergenic | 40.0% |
| ! | CCTTTTGATGTCGATGACTT+TGG | - | chr3.1:60041831-60041850 | MS.gene30760:CDS | 40.0% |
| ! | GAACTTTTGCATCGTCACTA+CGG | + | chr3.1:60041380-60041399 | None:intergenic | 40.0% |
| ! | GAGGATGATGGTGATTTCTT+CGG | - | chr3.1:60041759-60041778 | MS.gene30760:CDS | 40.0% |
| ! | TTCTGATGATGAATTTGGGG+AGG | - | chr3.1:60041740-60041759 | MS.gene30760:CDS | 40.0% |
| AGAGGAGTAGGATAGCATTG+TGG | + | chr3.1:60041197-60041216 | None:intergenic | 45.0% | |
| AGGAGTAGGATAGCATTGTG+GGG | + | chr3.1:60041195-60041214 | None:intergenic | 45.0% | |
| CGGCTAGTAGCACACATATA+AGG | + | chr3.1:60041246-60041265 | None:intergenic | 45.0% | |
| GAGGAGTAGGATAGCATTGT+GGG | + | chr3.1:60041196-60041215 | None:intergenic | 45.0% | |
| GATGAATTTGGGGAGGATGA+TGG | - | chr3.1:60041747-60041766 | MS.gene30760:CDS | 45.0% | |
| GTCTTTCCAACAGTATCCTG+TGG | + | chr3.1:60041908-60041927 | None:intergenic | 45.0% | |
| TCTTGCCATTCAGAGACTTC+CGG | + | chr3.1:60041464-60041483 | None:intergenic | 45.0% | |
| TGGAAAGACCTAGAAGACGA+CGG | - | chr3.1:60041919-60041938 | MS.gene30760:CDS | 45.0% | |
| TGGATTCCACAGGATACTGT+TGG | - | chr3.1:60041899-60041918 | MS.gene30760:CDS | 45.0% | |
| TGGCTAAAGTTGGCAAGATG+CGG | - | chr3.1:60041025-60041044 | MS.gene30760:CDS | 45.0% | |
| TTCCTTGTGACCTCGAGATT+GGG | + | chr3.1:60041058-60041077 | None:intergenic | 45.0% | |
| TTTCCTTGTGACCTCGAGAT+TGG | + | chr3.1:60041059-60041078 | None:intergenic | 45.0% | |
| ! | AAGATGGCTGTTCTTTTGCG+GGG | - | chr3.1:60041499-60041518 | MS.gene30760:CDS | 45.0% |
| ! | CAAGATGGCTGTTCTTTTGC+GGG | - | chr3.1:60041498-60041517 | MS.gene30760:CDS | 45.0% |
| ! | GCAAGATGGCTGTTCTTTTG+CGG | - | chr3.1:60041497-60041516 | MS.gene30760:CDS | 45.0% |
| ! | TTCTTTTGCGGGGAGTTACA+AGG | - | chr3.1:60041509-60041528 | MS.gene30760:CDS | 45.0% |
| ! | TTTCTTCGGCTCCATTGGTT+TGG | - | chr3.1:60041773-60041792 | MS.gene30760:CDS | 45.0% |
| !! | TTCTTCGGCTCCATTGGTTT+GGG | - | chr3.1:60041774-60041793 | MS.gene30760:CDS | 45.0% |
| !!! | GATGACTTTGGTTTTCGGAG+TGG | - | chr3.1:60041843-60041862 | MS.gene30760:CDS | 45.0% |
| AAAGACCTAGAAGACGACGG+AGG | - | chr3.1:60041922-60041941 | MS.gene30760:CDS | 50.0% | |
| AACCTCCATACAGACTGAGC+AGG | + | chr3.1:60041172-60041191 | None:intergenic | 50.0% | |
| AACTCCAGGAGCTATGGTAC+TGG | - | chr3.1:60041665-60041684 | MS.gene30760:CDS | 50.0% | |
| ACAGGTGAAAGGTTGGACTG+TGG | - | chr3.1:60041428-60041447 | MS.gene30760:CDS | 50.0% | |
| ACAGGTTCTGCTGCTCTTTC+TGG | - | chr3.1:60041873-60041892 | MS.gene30760:CDS | 50.0% | |
| ACTCCAGGAGCTATGGTACT+GGG | - | chr3.1:60041666-60041685 | MS.gene30760:CDS | 50.0% | |
| CAAAGGGGACAAAGAAGCTC+AGG | + | chr3.1:60041402-60041421 | None:intergenic | 50.0% | |
| CAGTCCAACCTTTCACCTGT+CGG | + | chr3.1:60041428-60041447 | None:intergenic | 50.0% | |
| CTTGCCATTCAGAGACTTCC+GGG | + | chr3.1:60041463-60041482 | None:intergenic | 50.0% | |
| GGTGATTTCTTCGGCTCCAT+TGG | - | chr3.1:60041768-60041787 | MS.gene30760:CDS | 50.0% | |
| GTCTTCAACTCCAGGAGCTA+TGG | - | chr3.1:60041659-60041678 | MS.gene30760:CDS | 50.0% | |
| TACCTGCTCAGTCTGTATGG+AGG | - | chr3.1:60041167-60041186 | MS.gene30760:CDS | 50.0% | |
| TGCTACCTGCTCAGTCTGTA+TGG | - | chr3.1:60041164-60041183 | MS.gene30760:CDS | 50.0% | |
| TTTCGGAGTGGTGCATCTAC+AGG | - | chr3.1:60041855-60041874 | MS.gene30760:CDS | 50.0% | |
| TTTCTGGACGTGGATTCCAC+AGG | - | chr3.1:60041889-60041908 | MS.gene30760:CDS | 50.0% | |
| ! | TAGAAGACGACGGAGGCATA+GGG | - | chr3.1:60041929-60041948 | MS.gene30760:CDS | 50.0% |
| !! | AGGCATAGGGTACTGAATGC+TGG | - | chr3.1:60041942-60041961 | MS.gene30760:CDS | 50.0% |
| !! | ATAGGGTACTGAATGCTGGC+CGG | - | chr3.1:60041946-60041965 | MS.gene30760:CDS | 50.0% |
| !! | GTGGTACTGGCAGCTTTATC+AGG | - | chr3.1:60041796-60041815 | MS.gene30760:CDS | 50.0% |
| !! | TCCATTGGTTTGGGTGGTAC+TGG | - | chr3.1:60041783-60041802 | MS.gene30760:CDS | 50.0% |
| ACTTCTCGTGGTCGCGAACA+TGG | + | chr3.1:60041564-60041583 | None:intergenic | 55.0% | |
| ATGTTCGCGACCACGAGAAG+TGG | - | chr3.1:60041563-60041582 | MS.gene30760:CDS | 55.0% | |
| CGGGGAGTTACAAGGAGCTT+AGG | - | chr3.1:60041517-60041536 | MS.gene30760:CDS | 55.0% | |
| CTATGCCTCCGTCGTCTTCT+AGG | + | chr3.1:60041930-60041949 | None:intergenic | 55.0% | |
| CTCCAGGAGCTATGGTACTG+GGG | - | chr3.1:60041667-60041686 | MS.gene30760:CDS | 55.0% | |
| GCCAGTACCACCCAAACCAA+TGG | + | chr3.1:60041787-60041806 | None:intergenic | 55.0% | |
| GTCCCAATCTCGAGGTCACA+AGG | - | chr3.1:60041053-60041072 | MS.gene30760:CDS | 55.0% | |
| TCCAACCTTTCACCTGTCGG+CGG | + | chr3.1:60041425-60041444 | None:intergenic | 55.0% | |
| TCTGCTGCTCTTTCTGGACG+TGG | - | chr3.1:60041879-60041898 | MS.gene30760:CDS | 55.0% | |
| TTTCACCTGTCGGCGGCAAA+GGG | + | chr3.1:60041418-60041437 | None:intergenic | 55.0% | |
| ! | CTAGAAGACGACGGAGGCAT+AGG | - | chr3.1:60041928-60041947 | MS.gene30760:CDS | 55.0% |
| ! | TCCAGGAGCTATGGTACTGG+GGG | - | chr3.1:60041668-60041687 | MS.gene30760:CDS | 55.0% |
| !! | TTCGGCTCCATTGGTTTGGG+TGG | - | chr3.1:60041777-60041796 | MS.gene30760:CDS | 55.0% |
| CGGTGCAAGTCCCAATCTCG+AGG | - | chr3.1:60041045-60041064 | MS.gene30760:CDS | 60.0% | |
| CGTACAGGGTCCACTTCTCG+TGG | + | chr3.1:60041576-60041595 | None:intergenic | 60.0% | |
| CTTTCACCTGTCGGCGGCAA+AGG | + | chr3.1:60041419-60041438 | None:intergenic | 60.0% | |
| CTTTGCCGCCGACAGGTGAA+AGG | - | chr3.1:60041417-60041436 | MS.gene30760:CDS | 60.0% | |
| GCAGCCCGGAAGTCTCTGAA+TGG | - | chr3.1:60041456-60041475 | MS.gene30760:CDS | 60.0% | |
| GGACTGTGGTTGAAGCAGCC+CGG | - | chr3.1:60041442-60041461 | MS.gene30760:CDS | 60.0% | |
| GTGCTCGAGCCAAATGACCG+TGG | - | chr3.1:60041696-60041715 | MS.gene30760:CDS | 60.0% | |
| TCCCCCAGTACCATAGCTCC+TGG | + | chr3.1:60041672-60041691 | None:intergenic | 60.0% | |
| TTCACCTGTCGGCGGCAAAG+GGG | + | chr3.1:60041417-60041436 | None:intergenic | 60.0% | |
| GCCGCCGACAGGTGAAAGGT+TGG | - | chr3.1:60041421-60041440 | MS.gene30760:CDS | 65.0% | |
| TTGTCCCCTTTGCCGCCGAC+AGG | - | chr3.1:60041410-60041429 | MS.gene30760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 60041024 | 60041971 | 60041024 | ID=MS.gene30760 |
| chr3.1 | mRNA | 60041024 | 60041971 | 60041024 | ID=MS.gene30760.t1;Parent=MS.gene30760 |
| chr3.1 | exon | 60041024 | 60041971 | 60041024 | ID=MS.gene30760.t1.exon1;Parent=MS.gene30760.t1 |
| chr3.1 | CDS | 60041024 | 60041971 | 60041024 | ID=cds.MS.gene30760.t1;Parent=MS.gene30760.t1 |
| Gene Sequence |
| Protein sequence |
