AlfalfaGEDB | MS.gene30881

M. sativa cultivar XinJiangDaYe / MS.gene30881

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30881.t1	KEH42317.1	85	234	28	1	1	234	9	235	5.60E-99	370.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30881.t1	Q8GXF8	41.8	237	118	4	1	225	10	238	5.6e-31	136.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30881.t1	A0A072VKJ6	85.0	234	28	1	1	234	9	235	4.0e-99	370.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051509	MS.gene30881	0.830955	2.19E-55	-1.69E-46
MS.gene053436	MS.gene30881	0.800273	1.56E-48	-1.69E-46
MS.gene053574	MS.gene30881	0.82528	5.11E-54	-1.69E-46
MS.gene053626	MS.gene30881	0.804287	2.32E-49	-1.69E-46
MS.gene056422	MS.gene30881	0.814345	1.62E-51	-1.69E-46
MS.gene057086	MS.gene30881	0.812652	3.81E-51	-1.69E-46
MS.gene059367	MS.gene30881	0.805238	1.47E-49	-1.69E-46
MS.gene059368	MS.gene30881	0.802707	4.94E-49	-1.69E-46
MS.gene06097	MS.gene30881	0.800405	1.46E-48	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30881.t1	MTR_1g067260	94.444	234	6	1	1	234	9	235	1.27e-154	431

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30881.t1	AT5G02750	42.194	237	117	4	1	225	10	238	4.26e-40	139

Find 85 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGGTGCGGTTAATGCTTC+TGG	0.240119	1.2:+50593990	None:intergenic
ATTCGATTCGATTCAATTGA+TGG	0.255208	1.2:-50592792	MS.gene30881:CDS
GCGGTGGTGGCGGCGGGTGG+AGG	0.305779	1.2:+50594256	None:intergenic
AGTGAAGGAGGTGGCGGCTT+CGG	0.342382	1.2:-50593793	MS.gene30881:CDS
GTTAGTGAGGTTTGTGAGGT+GGG	0.345320	1.2:+50594289	None:intergenic
ACGGCGGTGGTGGCGGCGGG+TGG	0.353168	1.2:+50594253	None:intergenic
AGGTTTGTGAGGTGGGGAGG+AGG	0.355556	1.2:+50594296	None:intergenic
TGAGACGGCGGTGGTGGCGG+CGG	0.357772	1.2:+50594249	None:intergenic
GGCGACGGTGGTTTCTTTGC+CGG	0.368886	1.2:-50593769	MS.gene30881:CDS
CGACTCACCGTCTCGATAAA+CGG	0.372592	1.2:+50593861	None:intergenic
GGGAGGTGGAAGAGGTGAGG+TGG	0.376413	1.2:+50594091	None:intergenic
AGGTGAGACGGCGGTGGTGG+CGG	0.387821	1.2:+50594246	None:intergenic
AGGTGGAAGAGGTGAGGTGG+GGG	0.389070	1.2:+50594094	None:intergenic
GAGACGGCGGTGGTGGCGGC+GGG	0.400011	1.2:+50594250	None:intergenic
GTGAGGTTTGTGAGGTGGGG+AGG	0.400151	1.2:+50594293	None:intergenic
GTAAAGAAGAGATGCAAGTA+GGG	0.417369	1.2:-50593707	MS.gene30881:CDS
GGAAGGTGAGACGGCGGTGG+TGG	0.421381	1.2:+50594243	None:intergenic
GGGTTAGAGAGAAGAGTGAT+GGG	0.421809	1.2:+50594210	None:intergenic
GGAGGTGGAAGAGGTGAGGT+GGG	0.422966	1.2:+50594092	None:intergenic
GGTTTCTTTGCCGGCGGTGG+AGG	0.424492	1.2:-50593760	MS.gene30881:CDS
GGTGGTTTCTTTGCCGGCGG+TGG	0.426920	1.2:-50593763	MS.gene30881:CDS
GAGGTGGAAGAGGTGAGGTG+GGG	0.427192	1.2:+50594093	None:intergenic
TTCTCTCATGGAAGTAGAAA+CGG	0.432170	1.2:+50594070	None:intergenic
ATAGAGTGTGAAGGTGGTGA+AGG	0.433531	1.2:+50594189	None:intergenic
GTAGAAACGGGAGGTGGAAG+AGG	0.435553	1.2:+50594083	None:intergenic
GCGGTGGAGGTGAGTGTTGG+TGG	0.436431	1.2:-50593747	MS.gene30881:CDS
TATTCTTCTGCACCACCGCT+TGG	0.446476	1.2:-50593909	MS.gene30881:CDS
GGTTTGTGAGGTGGGGAGGA+GGG	0.446909	1.2:+50594297	None:intergenic
TTAGTGAGGTTTGTGAGGTG+GGG	0.456279	1.2:+50594290	None:intergenic
TGATGGGGAGGAGAGGAGGA+AGG	0.463599	1.2:+50594226	None:intergenic
GGTGGCGGCTTCGGCGGCGA+CGG	0.468504	1.2:-50593784	MS.gene30881:CDS
TTGAGTGAGGAGGTGTAGAA+AGG	0.478500	1.2:+50594124	None:intergenic
GACAGGGACTGTTGTGGTAG+AGG	0.480804	1.2:-50592832	MS.gene30881:intron
GCGGCGGGTGGAGGAGAGAA+TGG	0.481068	1.2:+50594265	None:intergenic
AGAGTGATGGGGAGGAGAGG+AGG	0.485536	1.2:+50594222	None:intergenic
AGAAGAGTGATGGGGAGGAG+AGG	0.486681	1.2:+50594219	None:intergenic
AGAGGGGAAGGAAGTGAAGG+AGG	0.486989	1.2:-50593805	MS.gene30881:CDS
AGGGTTAGAGAGAAGAGTGA+TGG	0.488634	1.2:+50594209	None:intergenic
TCGAGACGGTGAGTCGGTGT+TGG	0.493743	1.2:-50593854	MS.gene30881:CDS
TGTTAGTGAGGTTTGTGAGG+TGG	0.495158	1.2:+50594288	None:intergenic
TGTAAAGAAGAGATGCAAGT+AGG	0.495873	1.2:-50593708	MS.gene30881:CDS
AGGAGAGGAGGAAGGTGAGA+CGG	0.496128	1.2:+50594234	None:intergenic
AGTCGGTGTTGGAGATTGGT+GGG	0.502126	1.2:-50593843	MS.gene30881:CDS
TTTAGCCTCCAGTGTGAAAA+CGG	0.505498	1.2:+50593972	None:intergenic
TGAAGAGGGGAAGGAAGTGA+AGG	0.505805	1.2:-50593808	MS.gene30881:CDS
GGAGGAAGGTGAGACGGCGG+TGG	0.506705	1.2:+50594240	None:intergenic
CCGGCGGTGGAGGTGAGTGT+TGG	0.507563	1.2:-50593750	MS.gene30881:CDS
TTTGAGTTGTGAAGAGGGGA+AGG	0.511445	1.2:-50593817	MS.gene30881:CDS
GGTGAGTCGGTGTTGGAGAT+TGG	0.519084	1.2:-50593847	MS.gene30881:CDS
TCTCTCATGGAAGTAGAAAC+GGG	0.519235	1.2:+50594071	None:intergenic
GGCGGCTTCGGCGGCGACGG+TGG	0.523068	1.2:-50593781	MS.gene30881:CDS
AAAGGAGGTGACGTGAAATG+AGG	0.524400	1.2:+50594147	None:intergenic
GAAGGAAGTGAAGGAGGTGG+CGG	0.525705	1.2:-50593799	MS.gene30881:CDS
GGGGAAGGAAGTGAAGGAGG+TGG	0.525875	1.2:-50593802	MS.gene30881:CDS
GTCGGTGTCACGTTCTCTCA+TGG	0.527329	1.2:+50594058	None:intergenic
GAGTCGGTGTTGGAGATTGG+TGG	0.533720	1.2:-50593844	MS.gene30881:CDS
CCAACACTCACCTCCACCGC+CGG	0.535946	1.2:+50593750	None:intergenic
AGGAGAGAATGGTGTTAGTG+AGG	0.537249	1.2:+50594276	None:intergenic
TAGAGAGAAGAGTGATGGGG+AGG	0.538205	1.2:+50594214	None:intergenic
CGGTGGAGGTGAGTGTTGGT+GGG	0.538337	1.2:-50593746	MS.gene30881:CDS
TGAGGAGGTGTAGAAAGGAA+AGG	0.539259	1.2:+50594129	None:intergenic
AGAAAGCGTTAACAATGTGT+TGG	0.543326	1.2:+50593932	None:intergenic
GAAGGAGGTGGCGGCTTCGG+CGG	0.550251	1.2:-50593790	MS.gene30881:CDS
TCAATTGAATCGAATCGAAT+CGG	0.551620	1.2:+50592795	None:intergenic
TAGAGTGTGAAGGTGGTGAA+GGG	0.555888	1.2:+50594190	None:intergenic
GGAGGTGTAGAAAGGAAAGG+AGG	0.555891	1.2:+50594132	None:intergenic
AACGGGAGGTGGAAGAGGTG+AGG	0.556535	1.2:+50594088	None:intergenic
GGGTGTTTGATTGAGTGAGG+AGG	0.557981	1.2:+50594114	None:intergenic
AGAGGAGGAAGGTGAGACGG+CGG	0.562404	1.2:+50594237	None:intergenic
ATGGAAGTAGAAACGGGAGG+TGG	0.566702	1.2:+50594077	None:intergenic
TTTGATTCCGTTTATCGAGA+CGG	0.586178	1.2:-50593868	MS.gene30881:CDS
CGTTTATCGAGACGGTGAGT+CGG	0.594467	1.2:-50593860	MS.gene30881:CDS
ACAGGGACTGTTGTGGTAGA+GGG	0.596417	1.2:-50592831	MS.gene30881:intron
TGGTGTTAGTGAGGTTTGTG+AGG	0.597711	1.2:+50594285	None:intergenic
GTTGAAGAGATAGAGTGTGA+AGG	0.600439	1.2:+50594180	None:intergenic
GACGGTGGTTTCTTTGCCGG+CGG	0.603871	1.2:-50593766	MS.gene30881:CDS
GAGAAGGAGTAGCACAGCGT+CGG	0.614727	1.2:+50594040	None:intergenic
GGTTAGAGAGAAGAGTGATG+GGG	0.629072	1.2:+50594211	None:intergenic
ACCTTAGACAGGGACTGTTG+TGG	0.630201	1.2:-50592838	MS.gene30881:intron
GTGTTTCACAGAACAAGAGA+AGG	0.630662	1.2:+50594024	None:intergenic
GAAGAGATAGAGTGTGAAGG+TGG	0.634233	1.2:+50594183	None:intergenic
ACAAAACATGCACCAAGCGG+TGG	0.668257	1.2:+50593897	None:intergenic
GATACAAAACATGCACCAAG+CGG	0.725439	1.2:+50593894	None:intergenic
CCTCCAGTGTGAAAACGGTG+CGG	0.730782	1.2:+50593977	None:intergenic
CTCATGGAAGTAGAAACGGG+AGG	0.752093	1.2:+50594074	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAATTAACTAATGTTAA+GGG	+	chr1.2:50594034-50594053	None:intergenic	10.0%
!!!	TAACTATTAATTTATTGATT+TGG	-	chr1.2:50593955-50593974	MS.gene30881:CDS	10.0%
!!	GATAAAATTAACTAATGTTA+AGG	+	chr1.2:50594035-50594054	None:intergenic	15.0%
!!!	AATTTAAAGATTTTTGAAGT+AGG	+	chr1.2:50593663-50593682	None:intergenic	15.0%
!!	AAATTAGTGCAAAACATAAT+AGG	-	chr1.2:50593575-50593594	MS.gene30881:intron	20.0%
!!	AGGAATGATTGATTAATTAA+AGG	-	chr1.2:50593595-50593614	MS.gene30881:intron	20.0%
!!	GGAATGATTGATTAATTAAA+GGG	-	chr1.2:50593596-50593615	MS.gene30881:intron	20.0%
!!	TAATGTTAAGGGTTTAATTA+AGG	+	chr1.2:50594023-50594042	None:intergenic	20.0%
!!	TTTAATTAAGGCAAATTCTA+TGG	+	chr1.2:50594011-50594030	None:intergenic	20.0%
!	TTAATTAAAGGGAACTTCTA+CGG	-	chr1.2:50593607-50593626	MS.gene30881:intron	25.0%
!	TTCAAAAACAAATCGAAGAA+AGG	-	chr1.2:50594065-50594084	MS.gene30881:CDS	25.0%
!!!	TGCATACATGTTAATTTGTT+TGG	-	chr1.2:50594229-50594248	MS.gene30881:CDS	25.0%
!!!	TTTTATTTCTTCGACGTTTT+TGG	-	chr1.2:50593863-50593882	MS.gene30881:CDS	25.0%
	ATTTACTAGTCATTGATAGG+AGG	-	chr1.2:50594102-50594121	MS.gene30881:CDS	30.0%
	GCAATTTACTAGTCATTGAT+AGG	-	chr1.2:50594099-50594118	MS.gene30881:CDS	30.0%
	TATGGTACACCCAAAAATTT+GGG	+	chr1.2:50593993-50594012	None:intergenic	30.0%
	TCAATTGAATCGAATCGAAT+CGG	+	chr1.2:50594313-50594332	None:intergenic	30.0%
!	ACCAATACACCCAAATTTTT+GGG	-	chr1.2:50593981-50594000	MS.gene30881:CDS	30.0%
!	ATGTGTATTTTACCTTGGTT+GGG	-	chr1.2:50593463-50593482	MS.gene30881:intron	30.0%
!	ATTCGATTCGATTCAATTGA+TGG	-	chr1.2:50594313-50594332	MS.gene30881:CDS	30.0%
!	ATTGGATGTGTATTTTACCT+TGG	-	chr1.2:50593458-50593477	MS.gene30881:intron	30.0%
!	TACCAATACACCCAAATTTT+TGG	-	chr1.2:50593980-50593999	MS.gene30881:CDS	30.0%
!!!	TTGTTTGGTGTTAGATGTTT+TGG	-	chr1.2:50594244-50594263	MS.gene30881:CDS	30.0%
	ACCCAAAAATTTGGGTGTAT+TGG	+	chr1.2:50593985-50594004	None:intergenic	35.0%
	CAATGAAACAAATGCTGACA+TGG	+	chr1.2:50593442-50593461	None:intergenic	35.0%
	CATGTCAGCATTTGTTTCAT+TGG	-	chr1.2:50593440-50593459	MS.gene30881:intron	35.0%
	CTATGGTACACCCAAAAATT+TGG	+	chr1.2:50593994-50594013	None:intergenic	35.0%
	GATCTCTCCAAAAACATCAT+CGG	+	chr1.2:50593530-50593549	None:intergenic	35.0%
	GTAAAGAAGAGATGCAAGTA+GGG	-	chr1.2:50593398-50593417	MS.gene30881:intron	35.0%
	TACCGGTACACCTTAATTTA+CGG	+	chr1.2:50593638-50593657	None:intergenic	35.0%
	TGTAAAGAAGAGATGCAAGT+AGG	-	chr1.2:50593397-50593416	MS.gene30881:intron	35.0%
	TTCTCTCATGGAAGTAGAAA+CGG	+	chr1.2:50593038-50593057	None:intergenic	35.0%
	TTTGATTCCGTTTATCGAGA+CGG	-	chr1.2:50593237-50593256	MS.gene30881:intron	35.0%
!	GATGTGTATTTTACCTTGGT+TGG	-	chr1.2:50593462-50593481	MS.gene30881:intron	35.0%
!	GGCAATTAGTTGGCTTAATA+TGG	-	chr1.2:50594201-50594220	MS.gene30881:CDS	35.0%
!!	AGAAAGCGTTAACAATGTGT+TGG	+	chr1.2:50593176-50593195	None:intergenic	35.0%
!!!	ATGTTTTTGGAGAGATCCAA+CGG	-	chr1.2:50593533-50593552	MS.gene30881:intron	35.0%
!!!	GATTTTTGAAGTAGGAGTAC+CGG	+	chr1.2:50593655-50593674	None:intergenic	35.0%
	ACCCGTAAATTAAGGTGTAC+CGG	-	chr1.2:50593633-50593652	MS.gene30881:intron	40.0%
	ACCGGTACACCTTAATTTAC+GGG	+	chr1.2:50593637-50593656	None:intergenic	40.0%
	AGCTTGTGATATGTGTGATG+AGG	-	chr1.2:50594166-50594185	MS.gene30881:CDS	40.0%
	GATACAAAACATGCACCAAG+CGG	+	chr1.2:50593214-50593233	None:intergenic	40.0%
	GTGTTTCACAGAACAAGAGA+AGG	+	chr1.2:50593084-50593103	None:intergenic	40.0%
	GTTGAAGAGATAGAGTGTGA+AGG	+	chr1.2:50592928-50592947	None:intergenic	40.0%
	TACGGTACACCCGTAAATTA+AGG	-	chr1.2:50593625-50593644	MS.gene30881:intron	40.0%
	TATGTGTGATGAGGAGAAGA+TGG	-	chr1.2:50594175-50594194	MS.gene30881:CDS	40.0%
	TCTCCAAAAACATCATCGGA+CGG	+	chr1.2:50593526-50593545	None:intergenic	40.0%
	TCTCTCATGGAAGTAGAAAC+GGG	+	chr1.2:50593037-50593056	None:intergenic	40.0%
	TTTAGCCTCCAGTGTGAAAA+CGG	+	chr1.2:50593136-50593155	None:intergenic	40.0%
!	TGGTAGAGGGAATGATTTTG+TGG	-	chr1.2:50594287-50594306	MS.gene30881:CDS	40.0%
!	TTACCGTCCGATGATGTTTT+TGG	-	chr1.2:50593520-50593539	MS.gene30881:intron	40.0%
!	TTTTACCTTGGTTGGGAAAG+AGG	-	chr1.2:50593470-50593489	MS.gene30881:intron	40.0%
!!	AGATGTTTTGGACCTTAGAC+AGG	-	chr1.2:50594256-50594275	MS.gene30881:CDS	40.0%
!!	CATTGATAGGAGGCATCATA+GGG	-	chr1.2:50594112-50594131	MS.gene30881:CDS	40.0%
!!	GATGTTTTGGACCTTAGACA+GGG	-	chr1.2:50594257-50594276	MS.gene30881:CDS	40.0%
!!	TCATTGATAGGAGGCATCAT+AGG	-	chr1.2:50594111-50594130	MS.gene30881:CDS	40.0%
!!!	GCTTGGTGCATGTTTTGTAT+CGG	-	chr1.2:50593213-50593232	MS.gene30881:intron	40.0%
!!!	GGTGTTTTGAGTTGTGAAGA+GGG	-	chr1.2:50593283-50593302	MS.gene30881:intron	40.0%
!!!	GTGTTTTGAGTTGTGAAGAG+GGG	-	chr1.2:50593284-50593303	MS.gene30881:intron	40.0%
	AAAGGAGGTGACGTGAAATG+AGG	+	chr1.2:50592961-50592980	None:intergenic	45.0%
	AAGATGGCGTGGCAATTAGT+TGG	-	chr1.2:50594191-50594210	MS.gene30881:CDS	45.0%
	AGGGTTAGAGAGAAGAGTGA+TGG	+	chr1.2:50592899-50592918	None:intergenic	45.0%
	ATAGAGTGTGAAGGTGGTGA+AGG	+	chr1.2:50592919-50592938	None:intergenic	45.0%
	GAAGAGATAGAGTGTGAAGG+TGG	+	chr1.2:50592925-50592944	None:intergenic	45.0%
	GGGTTAGAGAGAAGAGTGAT+GGG	+	chr1.2:50592898-50592917	None:intergenic	45.0%
	GGTAACCGAAACCTACAACA+AGG	+	chr1.2:50593505-50593524	None:intergenic	45.0%
	GGTTAGAGAGAAGAGTGATG+GGG	+	chr1.2:50592897-50592916	None:intergenic	45.0%
	GTTAGTGAGGTTTGTGAGGT+GGG	+	chr1.2:50592819-50592838	None:intergenic	45.0%
	TAGAGTGTGAAGGTGGTGAA+GGG	+	chr1.2:50592918-50592937	None:intergenic	45.0%
	TGGAGAGATCCAACGGTTAT+GGG	-	chr1.2:50593540-50593559	MS.gene30881:intron	45.0%
	TGTTAGTGAGGTTTGTGAGG+TGG	+	chr1.2:50592820-50592839	None:intergenic	45.0%
	TTAGTGAGGTTTGTGAGGTG+GGG	+	chr1.2:50592818-50592837	None:intergenic	45.0%
	TTGGAGAGATCCAACGGTTA+TGG	-	chr1.2:50593539-50593558	MS.gene30881:intron	45.0%
!	AGGAGAGAATGGTGTTAGTG+AGG	+	chr1.2:50592832-50592851	None:intergenic	45.0%
!	CGTGTCCTTGTTGTAGGTTT+CGG	-	chr1.2:50593497-50593516	MS.gene30881:intron	45.0%
!	TGAGGAGGTGTAGAAAGGAA+AGG	+	chr1.2:50592979-50592998	None:intergenic	45.0%
!	TGGTGTTAGTGAGGTTTGTG+AGG	+	chr1.2:50592823-50592842	None:intergenic	45.0%
!	TTGAGTGAGGAGGTGTAGAA+AGG	+	chr1.2:50592984-50593003	None:intergenic	45.0%
!!	TTTGAGTTGTGAAGAGGGGA+AGG	-	chr1.2:50593288-50593307	MS.gene30881:intron	45.0%
!!!	CTAGCCTTGACTGTTTTCTG+TGG	+	chr1.2:50594148-50594167	None:intergenic	45.0%
!!!	GGGTGTTTTGAGTTGTGAAG+AGG	-	chr1.2:50593282-50593301	MS.gene30881:intron	45.0%
!!	GATTTAATTATTATAATTAT+AGG	-	chr1.2:50593893-50593912	MS.gene30881:CDS	5.0%
!!	TAAATTAATTATTATTCTTA+TGG	-	chr1.2:50593677-50593696	MS.gene30881:intron	5.0%
	AACGGTGCGGTTAATGCTTC+TGG	+	chr1.2:50593118-50593137	None:intergenic	50.0%
	ACAAAACATGCACCAAGCGG+TGG	+	chr1.2:50593211-50593230	None:intergenic	50.0%
	ACAGGGACTGTTGTGGTAGA+GGG	-	chr1.2:50594274-50594293	MS.gene30881:CDS	50.0%
	ACCACAACAGTCCCTGTCTA+AGG	+	chr1.2:50594271-50594290	None:intergenic	50.0%
	ACCTTAGACAGGGACTGTTG+TGG	-	chr1.2:50594267-50594286	MS.gene30881:CDS	50.0%
	ATGGAAGTAGAAACGGGAGG+TGG	+	chr1.2:50593031-50593050	None:intergenic	50.0%
	CCAACGGTTATGGGAAGTCT+TGG	-	chr1.2:50593549-50593568	MS.gene30881:intron	50.0%
	CCAAGACTTCCCATAACCGT+TGG	+	chr1.2:50593552-50593571	None:intergenic	50.0%
	CGACTCACCGTCTCGATAAA+CGG	+	chr1.2:50593247-50593266	None:intergenic	50.0%
	CGTTTATCGAGACGGTGAGT+CGG	-	chr1.2:50593245-50593264	MS.gene30881:intron	50.0%
	CTCATGGAAGTAGAAACGGG+AGG	+	chr1.2:50593034-50593053	None:intergenic	50.0%
	GGGTCCACAGAAAACAGTCA+AGG	-	chr1.2:50594141-50594160	MS.gene30881:CDS	50.0%
	GGGTGTTTGATTGAGTGAGG+AGG	+	chr1.2:50592994-50593013	None:intergenic	50.0%
	GTGTTCCTCTTTCCCAACCA+AGG	+	chr1.2:50593478-50593497	None:intergenic	50.0%
	TATTCTTCTGCACCACCGCT+TGG	-	chr1.2:50593196-50593215	MS.gene30881:intron	50.0%
	TGAAGAGGGGAAGGAAGTGA+AGG	-	chr1.2:50593297-50593316	MS.gene30881:intron	50.0%
!	GAGGCATCATAGGGATAGTG+GGG	-	chr1.2:50594121-50594140	MS.gene30881:CDS	50.0%
!	GGAACACGTGTCCTTGTTGT+AGG	-	chr1.2:50593491-50593510	MS.gene30881:intron	50.0%
!	GGAGGTGTAGAAAGGAAAGG+AGG	+	chr1.2:50592976-50592995	None:intergenic	50.0%
!	TAACCGCACCGTTTTCACAC+TGG	-	chr1.2:50593125-50593144	MS.gene30881:intron	50.0%
!	TAGAGAGAAGAGTGATGGGG+AGG	+	chr1.2:50592894-50592913	None:intergenic	50.0%
!!	AGGAGGCATCATAGGGATAG+TGG	-	chr1.2:50594119-50594138	MS.gene30881:CDS	50.0%
!!	AGTCGGTGTTGGAGATTGGT+GGG	-	chr1.2:50593262-50593281	MS.gene30881:intron	50.0%
!!	GGAGGCATCATAGGGATAGT+GGG	-	chr1.2:50594120-50594139	MS.gene30881:CDS	50.0%
!!	TGGGGGTGTTTGATTGAGTG+AGG	+	chr1.2:50592997-50593016	None:intergenic	50.0%
	AGAGGGGAAGGAAGTGAAGG+AGG	-	chr1.2:50593300-50593319	MS.gene30881:intron	55.0%
	AGGAGAGGAGGAAGGTGAGA+CGG	+	chr1.2:50592874-50592893	None:intergenic	55.0%
	CCTCCAGTGTGAAAACGGTG+CGG	+	chr1.2:50593131-50593150	None:intergenic	55.0%
	GAAGGAAGTGAAGGAGGTGG+CGG	-	chr1.2:50593306-50593325	MS.gene30881:intron	55.0%
	GACAGGGACTGTTGTGGTAG+AGG	-	chr1.2:50594273-50594292	MS.gene30881:CDS	55.0%
	GAGAAGGAGTAGCACAGCGT+CGG	+	chr1.2:50593068-50593087	None:intergenic	55.0%
	GTAGAAACGGGAGGTGGAAG+AGG	+	chr1.2:50593025-50593044	None:intergenic	55.0%
	GTGATGAGGAGAAGATGGCG+TGG	-	chr1.2:50594180-50594199	MS.gene30881:CDS	55.0%
!	AGAAGAGTGATGGGGAGGAG+AGG	+	chr1.2:50592889-50592908	None:intergenic	55.0%
!!	GAGTCGGTGTTGGAGATTGG+TGG	-	chr1.2:50593261-50593280	MS.gene30881:intron	55.0%
!!	GGTGAGTCGGTGTTGGAGAT+TGG	-	chr1.2:50593258-50593277	MS.gene30881:intron	55.0%
!!	GTCGGTGTCACGTTCTCTCA+TGG	+	chr1.2:50593050-50593069	None:intergenic	55.0%
	AACGGGAGGTGGAAGAGGTG+AGG	+	chr1.2:50593020-50593039	None:intergenic	60.0%
	AGAGGAGGAAGGTGAGACGG+CGG	+	chr1.2:50592871-50592890	None:intergenic	60.0%
	AGGTGGAAGAGGTGAGGTGG+GGG	+	chr1.2:50593014-50593033	None:intergenic	60.0%
	AGGTTTGTGAGGTGGGGAGG+AGG	+	chr1.2:50592812-50592831	None:intergenic	60.0%
	GACGGTGGTTTCTTTGCCGG+CGG	-	chr1.2:50593339-50593358	MS.gene30881:intron	60.0%
	GAGGTGGAAGAGGTGAGGTG+GGG	+	chr1.2:50593015-50593034	None:intergenic	60.0%
	GGAGGTGGAAGAGGTGAGGT+GGG	+	chr1.2:50593016-50593035	None:intergenic	60.0%
	GGCGACGGTGGTTTCTTTGC+CGG	-	chr1.2:50593336-50593355	MS.gene30881:intron	60.0%
	GGGGAAGGAAGTGAAGGAGG+TGG	-	chr1.2:50593303-50593322	MS.gene30881:intron	60.0%
	GGTTTGTGAGGTGGGGAGGA+GGG	+	chr1.2:50592811-50592830	None:intergenic	60.0%
	GTGAGGTTTGTGAGGTGGGG+AGG	+	chr1.2:50592815-50592834	None:intergenic	60.0%
	TCGAGACGGTGAGTCGGTGT+TGG	-	chr1.2:50593251-50593270	MS.gene30881:intron	60.0%
	TGATGGGGAGGAGAGGAGGA+AGG	+	chr1.2:50592882-50592901	None:intergenic	60.0%
!	AGAGTGATGGGGAGGAGAGG+AGG	+	chr1.2:50592886-50592905	None:intergenic	60.0%
!	AGTGAAGGAGGTGGCGGCTT+CGG	-	chr1.2:50593312-50593331	MS.gene30881:intron	60.0%
!	CCGCACCGTTTTCACACTGG+AGG	-	chr1.2:50593128-50593147	MS.gene30881:intron	60.0%
!!	CGGTGGAGGTGAGTGTTGGT+GGG	-	chr1.2:50593359-50593378	MS.gene30881:intron	60.0%
	CCAACACTCACCTCCACCGC+CGG	+	chr1.2:50593358-50593377	None:intergenic	65.0%
	GGGAGGTGGAAGAGGTGAGG+TGG	+	chr1.2:50593017-50593036	None:intergenic	65.0%
	GGTGGTTTCTTTGCCGGCGG+TGG	-	chr1.2:50593342-50593361	MS.gene30881:intron	65.0%
	GGTTTCTTTGCCGGCGGTGG+AGG	-	chr1.2:50593345-50593364	MS.gene30881:intron	65.0%
!!	GCGGTGGAGGTGAGTGTTGG+TGG	-	chr1.2:50593358-50593377	MS.gene30881:intron	65.0%
	CCGGCGGTGGAGGTGAGTGT+TGG	-	chr1.2:50593355-50593374	MS.gene30881:intron	70.0%
	GCGGCGGGTGGAGGAGAGAA+TGG	+	chr1.2:50592843-50592862	None:intergenic	70.0%
	GGAAGGTGAGACGGCGGTGG+TGG	+	chr1.2:50592865-50592884	None:intergenic	70.0%
	GGAGGAAGGTGAGACGGCGG+TGG	+	chr1.2:50592868-50592887	None:intergenic	70.0%
!	AGGTGAGACGGCGGTGGTGG+CGG	+	chr1.2:50592862-50592881	None:intergenic	70.0%
!	GAAGGAGGTGGCGGCTTCGG+CGG	-	chr1.2:50593315-50593334	MS.gene30881:intron	70.0%
!!	TGAGACGGCGGTGGTGGCGG+CGG	+	chr1.2:50592859-50592878	None:intergenic	75.0%
!!	GGTGGCGGCTTCGGCGGCGA+CGG	-	chr1.2:50593321-50593340	MS.gene30881:intron	80.0%
!!!	GAGACGGCGGTGGTGGCGGC+GGG	+	chr1.2:50592858-50592877	None:intergenic	80.0%
!	GGCGGCTTCGGCGGCGACGG+TGG	-	chr1.2:50593324-50593343	MS.gene30881:intron	85.0%
!!!	ACGGCGGTGGTGGCGGCGGG+TGG	+	chr1.2:50592855-50592874	None:intergenic	85.0%
!!!	GCGGTGGTGGCGGCGGGTGG+AGG	+	chr1.2:50592852-50592871	None:intergenic	85.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	50592788	50594339	50592788	ID=MS.gene30881
chr1.2	mRNA	50592788	50594339	50592788	ID=MS.gene30881.t1;Parent=MS.gene30881
chr1.2	exon	50593697	50594339	50593697	ID=MS.gene30881.t1.exon1;Parent=MS.gene30881.t1
chr1.2	CDS	50593697	50594339	50593697	ID=cds.MS.gene30881.t1;Parent=MS.gene30881.t1
chr1.2	exon	50592788	50592849	50592788	ID=MS.gene30881.t1.exon2;Parent=MS.gene30881.t1
chr1.2	CDS	50592788	50592849	50592788	ID=cds.MS.gene30881.t1;Parent=MS.gene30881.t1

Gene Sequence

>MS.gene30881

ATGGCAGCACTTTCATCTCTCCCTCCTCCCCACCTCACAAACCTCACTAACACCATTCTCTCCTCCACCCGCCGCCACCACCGCCGTCTCACCTTCCTCCTCTCCTCCCCATCACTCTTCTCTCTAACCCTTCACCACCTTCACACTCTATCTCTTCAACAAAAAACTCTCCTCATTTCACGTCACCTCCTTTCCTTTCTACACCTCCTCACTCAATCAAACACCCCCACCTCACCTCTTCCACCTCCCGTTTCTACTTCCATGAGAGAACGTGACACCGACGCTGTGCTACTCCTTCTCTTGTTCTGTGAAACACATAAACACAATCCAGAAGCATTAACCGCACCGTTTTCACACTGGAGGCTAAACTTGAACAAAATCTTCTCCAACACATTGTTAACGCTTTCTTATTCTTCTGCACCACCGCTTGGTGCATGTTTTGTATCGGTTTTGATTCCGTTTATCGAGACGGTGAGTCGGTGTTGGAGATTGGTGGGTGTTTTGAGTTGTGAAGAGGGGAAGGAAGTGAAGGAGGTGGCGGCTTCGGCGGCGACGGTGGTTTCTTTGCCGGCGGTGGAGGTGAGTGTTGGTGGGAGAGAGTGTGTGATATGTAAAGAAGAGATGCAAGTAGGGAGAGACGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGTATTTTACCTTGGTTGGGAAAGAGGAACACGTGTCCTTGTTGTAGGTTTCGGTTACCGTCCGATGATGTTTTTGGAGAGATCCAACGGTTATGGGAAGTCTTGGTTAAAATTAGTGCAAAACATAATAGGAATGATTGATTAATTAAAGGGAACTTCTACGGTACACCCGTAAATTAAGGTGTACCGGTACTCCTACTTCAAAAATCTTTAAATTAATTATTATTCTTATGGAATAAAGAGCTATTTGTTGATATTTATATTTTAGAAAATGTCATTTTATAAGAAAAAACATCATTTTATTGTTTATAAAAATCATACTAATTTTTTTTATATTTTATTGTAAAAAATAATCAAAATTCTCTATTATGACTACAAAAATTTCAGAAAAATTAAATTTTATTTCTTCGACGTTTTTGGTAAATAAGATTTAATTATTATAATTATAGGTGATAGAAAACAATTTTCTCTTCAAAAAAATAACACATTTAACTATTAATTTATTGATTTGGTGTACCAATACACCCAAATTTTTGGGTGTACCATAGAATTTGCCTTAATTAAACCCTTAACATTAGTTAATTTTATCTTATTCTTACTTCAAAAACAAATCGAAGAAAGGTATATTTATGTGCAATTTACTAGTCATTGATAGGAGGCATCATAGGGATAGTGGGGTCCACAGAAAACAGTCAAGGCTAGCTTGTGATATGTGTGATGAGGAGAAGATGGCGTGGCAATTAGTTGGCTTAATATGGATTCTTGCATACATGTTAATTTGTTTGGTGTTAGATGTTTTGGACCTTAGACAGGGACTGTTGTGGTAGAGGGAATGATTTTGTGGCCGATTCGATTCGATTCAATTGATGGATAA

Protein sequence

>MS.gene30881.t1

MAALSSLPPPHLTNLTNTILSSTRRHHRRLTFLLSSPSLFSLTLHHLHTLSLQQKTLLISRHLLSFLHLLTQSNTPTSPLPPPVSTSMRERDTDAVLLLLLFCETHKHNPEALTAPFSHWRLNLNKIFSNTLLTLSYSSAPPLGACFVSVLIPFIETVSRCWRLVGVLSCEEGKEVKEVAASAATVVSLPAVEVSVGGRECVICKEEMQVGRDVWTVVVEGMILWPIRFDSIDG