AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053436


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053436.t1 MTR_5g025270 97.251 582 14 2 1 581 1 581 0.0 1158
MS.gene053436.t1 MTR_5g025230 82.818 582 95 4 1 581 1 578 0.0 988
MS.gene053436.t1 MTR_5g025250 82.131 582 100 3 1 581 1 579 0.0 979
MS.gene053436.t1 MTR_2g070460 36.644 584 333 15 24 577 32 608 9.01e-124 377
MS.gene053436.t1 MTR_8g037315 38.911 514 284 9 84 577 33 536 1.46e-113 349
MS.gene053436.t1 MTR_8g037275 37.475 499 283 9 100 577 81 571 3.34e-106 331
MS.gene053436.t1 MTR_8g037290 37.275 499 284 9 100 577 81 571 7.66e-105 327
MS.gene053436.t1 MTR_8g037310 36.434 516 299 10 83 577 64 571 8.11e-104 325
MS.gene053436.t1 MTR_3g110195 28.772 570 329 20 49 570 38 578 7.50e-57 201
MS.gene053436.t1 MTR_7g063800 25.963 493 294 23 121 570 98 562 4.61e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053436.t1 AT4G19170 68.571 560 148 6 29 578 54 595 0.0 795
MS.gene053436.t1 AT3G63520 40.077 519 281 8 83 580 28 537 6.49e-123 373
MS.gene053436.t1 AT1G30100 40.816 490 278 9 92 575 102 585 9.36e-121 369
MS.gene053436.t1 AT3G14440 40.121 496 282 10 92 580 112 599 1.99e-117 361
MS.gene053436.t1 AT4G18350 36.508 567 326 10 29 576 29 580 4.05e-117 360
MS.gene053436.t1 AT1G78390 38.462 494 284 11 96 581 176 657 4.61e-112 349
MS.gene053436.t1 AT3G24220 35.000 580 335 14 33 577 2 574 3.45e-103 323
MS.gene053436.t1 AT2G44990 24.868 567 301 28 112 572 75 622 7.48e-12 68.6
MS.gene053436.t1 AT2G44990 24.868 567 301 28 112 572 71 618 7.78e-12 68.6

Find 142 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCTCTTGACATGATTTC+TGG 0.188747 1.4:+29013491 MS.gene053436:CDS
GTTATGGGTGGTGGTGGTGG+TGG 0.196963 1.4:-29012619 None:intergenic
ATTTGCATCAAAACGGAAAT+AGG 0.215073 1.4:-29013357 None:intergenic
CTTGTTATTATGATGGGTTT+TGG 0.236999 1.4:-29012459 None:intergenic
ACACAATGTGAAATCATTAA+AGG 0.269615 1.4:+29012801 MS.gene053436:CDS
TTTGATGGATGAGATGTTAA+AGG 0.272209 1.4:-29012511 None:intergenic
GTGAAGATTAATATCAAAAC+TGG 0.276508 1.4:+29013752 MS.gene053436:CDS
AATCCAATGCCAAAGATTTC+AGG 0.293364 1.4:+29013878 MS.gene053436:CDS
CTAGATTTCGGGGTGATAAA+TGG 0.295975 1.4:+29013809 MS.gene053436:CDS
AATCTTGACGGCCGATTGTT+TGG 0.307017 1.4:-29013232 None:intergenic
TGTCTGGGATTGTGATGTTT+GGG 0.310552 1.4:-29012547 None:intergenic
AGAAGAGGATGATGGTTATT+TGG 0.316567 1.4:+29014006 MS.gene053436:CDS
CAGCGCGAAACCTAGATTTC+GGG 0.327084 1.4:+29013798 MS.gene053436:CDS
TCAGCGCGAAACCTAGATTT+CGG 0.334134 1.4:+29013797 MS.gene053436:CDS
TTCACCACTCCTGAAATCTT+TGG 0.336330 1.4:-29013887 None:intergenic
TACAATCCTTCTAACGGAAT+TGG 0.339439 1.4:+29013110 MS.gene053436:CDS
CATTTATCACCCCGAAATCT+AGG 0.339483 1.4:-29013808 None:intergenic
TCTAGGTTTCGCGCTGATAA+TGG 0.342314 1.4:-29013791 None:intergenic
ACCGCAGCACGTGTCATATC+TGG 0.342484 1.4:+29013083 MS.gene053436:CDS
GCTAAACCAATTCCGTTAGA+AGG 0.348673 1.4:-29013116 None:intergenic
GAGGTTATGGGTGGTGGTGG+TGG 0.353426 1.4:-29012622 None:intergenic
AACACAAGTTTGGCTTTGTT+TGG 0.358095 1.4:+29013140 MS.gene053436:CDS
GTGTCTGGGATTGTGATGTT+TGG 0.362352 1.4:-29012548 None:intergenic
TTGCTTACTTGTTATTATGA+TGG 0.362595 1.4:-29012466 None:intergenic
AGGTTTGTTTATGCGGCAAT+TGG 0.386277 1.4:+29013854 MS.gene053436:CDS
TTTGAGGTTATGGGTGGTGG+TGG 0.388850 1.4:-29012625 None:intergenic
TGGTTTAGCCAACACAAGTT+TGG 0.393154 1.4:+29013130 MS.gene053436:CDS
TGTTAAACATAACGATGTTC+CGG 0.404869 1.4:+29013382 MS.gene053436:CDS
TTGAAACCAGAAAACACGTT+TGG 0.405859 1.4:-29013026 None:intergenic
TTGATGGATGAGATGTTAAA+GGG 0.406557 1.4:-29012510 None:intergenic
GGTGTAAGCTTGATTTCATA+AGG 0.411021 1.4:-29013197 None:intergenic
TGCTTACTTGTTATTATGAT+GGG 0.425997 1.4:-29012465 None:intergenic
GGGAGTGATGATGGTGTTTG+TGG 0.434132 1.4:-29012651 None:intergenic
ACTCCTGAAATCTTTGGCAT+TGG 0.436531 1.4:-29013881 None:intergenic
CGTGGAAGAAACTGTGGGTT+TGG 0.439102 1.4:-29012867 None:intergenic
TTGTATGGAGAGGATTGTTA+TGG 0.439339 1.4:+29013947 MS.gene053436:CDS
ACACTTCCACCGTCACTTAA+CGG 0.447215 1.4:+29012825 MS.gene053436:CDS
CCTAAAATTGACGGCGACAC+TGG 0.451020 1.4:+29013290 MS.gene053436:CDS
AAACCATACGGCACCCTCCT+TGG 0.455270 1.4:-29014124 None:intergenic
TGAAACCAGAAAACACGTTT+GGG 0.456713 1.4:-29013025 None:intergenic
ATTTCTGGTGGTTCTCCAGT+AGG 0.459625 1.4:+29013506 MS.gene053436:CDS
AACGGCGCTTACATAAGAAA+TGG 0.460728 1.4:+29012843 MS.gene053436:CDS
CCGATCCATCAAAAGTTTCA+AGG 0.463927 1.4:+29013531 MS.gene053436:CDS
TGCTCAATGGAGAGAACATT+CGG 0.468229 1.4:-29013686 None:intergenic
TAACACCATTTGCATCAAAA+CGG 0.472715 1.4:-29013364 None:intergenic
CGCGATCAATGCGTGGGATG+GGG 0.473648 1.4:+29013631 MS.gene053436:CDS
ACGCGATCAATGCGTGGGAT+GGG 0.477959 1.4:+29013630 MS.gene053436:CDS
GTGACGAGTCGAAGATGAAA+TGG 0.483688 1.4:+29013579 MS.gene053436:CDS
GAAGTTGGATGTAGGTTGTA+TGG 0.483755 1.4:+29013932 MS.gene053436:CDS
TTATGTGCATGATGAGAAGA+AGG 0.484903 1.4:+29014033 MS.gene053436:CDS
GTTTGCCGTTAAAATCTTGA+CGG 0.485908 1.4:-29013244 None:intergenic
CACGCGATCAATGCGTGGGA+TGG 0.488713 1.4:+29013629 MS.gene053436:CDS
CCTCTTGACATGATTTCTGG+TGG 0.488783 1.4:+29013494 MS.gene053436:CDS
ATGAAATGGTTCGATGTGCC+AGG 0.489596 1.4:+29013593 MS.gene053436:CDS
GTCGCCGGAGTTTGAGATTG+TGG 0.494521 1.4:+29014087 MS.gene053436:CDS
ATTGTTTGGATATCACCGTT+TGG 0.495988 1.4:-29013218 None:intergenic
AACGGTGATATCCAAACAAT+CGG 0.496479 1.4:+29013221 MS.gene053436:CDS
AAGGGAGGGATAGAAGTTGT+TGG 0.498248 1.4:-29012492 None:intergenic
AAAACACGTTTGGGATAAGT+TGG 0.498794 1.4:-29013016 None:intergenic
TCCCTACGACACCGACAACT+TGG 0.500531 1.4:-29014179 None:intergenic
TCTCTCCATCGTATGCTCAA+TGG 0.500819 1.4:-29013699 None:intergenic
TTAATGATTTCACATTGTGT+TGG 0.501774 1.4:-29012798 None:intergenic
TTTGATGGATCGGAACCTAC+TGG 0.501938 1.4:-29013521 None:intergenic
TACAAAATCGAAAACGAAGC+TGG 0.505480 1.4:+29012990 MS.gene053436:CDS
AGTAATGCTGGGAGTGATGA+TGG 0.506662 1.4:-29012660 None:intergenic
AAAGAATAGGTTTGTTTATG+CGG 0.507283 1.4:+29013847 MS.gene053436:CDS
GGTCTTGTCATGGAGAAAAC+CGG 0.510037 1.4:-29013401 None:intergenic
GGTTTGTTTATGCGGCAATT+GGG 0.511453 1.4:+29013855 MS.gene053436:CDS
ACTGCTCATCCTAAAATTGA+CGG 0.512038 1.4:+29013281 MS.gene053436:CDS
ATGATTTCACATTGTGTTGG+AGG 0.513822 1.4:-29012795 None:intergenic
GGAGTTTGAGATTGTGGCGG+AGG 0.515266 1.4:+29014093 MS.gene053436:CDS
TGGATGAGATGTTAAAGGGA+GGG 0.519687 1.4:-29012506 None:intergenic
CACCAAGTTGTCGGTGTCGT+AGG 0.521647 1.4:+29014177 MS.gene053436:CDS
CACGCCATTACAATCTCAAA+CGG 0.522637 1.4:+29012927 MS.gene053436:CDS
GCGAAATCATGAAGAAAAGA+AGG 0.525570 1.4:-29013422 None:intergenic
GAGGGAGGATGGTGAAGAAG+AGG 0.527711 1.4:+29013991 MS.gene053436:CDS
ACCAAGTTGTCGGTGTCGTA+GGG 0.528287 1.4:+29014178 MS.gene053436:CDS
CCATCAAAAGTTTCAAGGAT+CGG 0.531863 1.4:+29013536 MS.gene053436:CDS
TATGGAGAGGATTGTTATGG+TGG 0.532430 1.4:+29013950 MS.gene053436:CDS
TGGATGTAGGTTGTATGGAG+AGG 0.534978 1.4:+29013937 MS.gene053436:CDS
GGTGATGGATGCGAAGTCGC+CGG 0.538159 1.4:+29014072 MS.gene053436:CDS
TGATTTCACATTGTGTTGGA+GGG 0.543631 1.4:-29012794 None:intergenic
GTGTTGGAGGGAGTTCGTCT+AGG 0.545453 1.4:-29012782 None:intergenic
TCATGCACGCGATCAATGCG+TGG 0.547541 1.4:+29013624 MS.gene053436:CDS
GAAATCAAGCTTACACCAAA+CGG 0.548084 1.4:+29013203 MS.gene053436:CDS
GTGTTTACGGATATTCAGCT+TGG 0.550330 1.4:+29013464 MS.gene053436:CDS
ATTTGTAAGTTTGAACGTAA+CGG 0.551232 1.4:-29012968 None:intergenic
TATGACACGTGCTGCGGTGA+CGG 0.553634 1.4:-29013078 None:intergenic
GTGATAAATGGTGATTACAT+GGG 0.557337 1.4:+29013821 MS.gene053436:CDS
GTCTGGGATTGTGATGTTTG+GGG 0.559818 1.4:-29012546 None:intergenic
GGAGGGAGTTCGTCTAGGAC+TGG 0.561664 1.4:-29012777 None:intergenic
TAAGCTTGATTTCATAAGGA+AGG 0.561782 1.4:-29013193 None:intergenic
ATGGATGAGATGTTAAAGGG+AGG 0.562849 1.4:-29012507 None:intergenic
TACCACCTCTTCGACGGTGA+TGG 0.565615 1.4:+29012897 MS.gene053436:CDS
ACATGTCTTGGATCTACAGA+TGG 0.569645 1.4:-29012735 None:intergenic
GGAGGGATAGAAGTTGTTGG+TGG 0.570969 1.4:-29012489 None:intergenic
TGCCATCACCGTCGAAGAGG+TGG 0.571502 1.4:-29012899 None:intergenic
GAGTGACATCACCAAGTTGT+CGG 0.571610 1.4:+29014168 MS.gene053436:CDS
TCACCGTCGAAGAGGTGGTA+AGG 0.575068 1.4:-29012894 None:intergenic
GGTGATAAATGGTGATTACA+TGG 0.575102 1.4:+29013820 MS.gene053436:CDS
TCCGCCACAATCTCAAACTC+CGG 0.575111 1.4:-29014091 None:intergenic
CTTATAGCTTCTGCTGCACG+TGG 0.575305 1.4:+29013053 MS.gene053436:CDS
AGGATGAGCAGTCATACTCA+TGG 0.575328 1.4:-29013270 None:intergenic
AACGTAACGGCTACAGAGTG+TGG 0.575577 1.4:-29012955 None:intergenic
GCGTGCATGATATTAAATCC+TGG 0.576415 1.4:-29013611 None:intergenic
TATGTGCATGATGAGAAGAA+GGG 0.578787 1.4:+29014034 MS.gene053436:CDS
AAGAAAAGAAGGTCTTGTCA+TGG 0.578816 1.4:-29013411 None:intergenic
AAACAAAGCCAAACTTGTGT+TGG 0.580683 1.4:-29013138 None:intergenic
AATAATCCATGAAAACCATA+CGG 0.583712 1.4:-29014136 None:intergenic
ATGTAAGCGCCGTTAAGTGA+CGG 0.584811 1.4:-29012834 None:intergenic
AAGGTGAGGAAGTTGGATGT+AGG 0.586152 1.4:+29013924 MS.gene053436:CDS
AATGTGTTGAGTAGTAATGC+TGG 0.590033 1.4:-29012672 None:intergenic
CCACCAGAAATCATGTCAAG+AGG 0.590568 1.4:-29013494 None:intergenic
GATGGTGAAGAAGAGGATGA+TGG 0.592671 1.4:+29013998 MS.gene053436:CDS
CGGAGGTGAAGTTGCCAAGG+AGG 0.593842 1.4:+29014110 MS.gene053436:CDS
GTGGGATGGGGAAGATGATG+AGG 0.595645 1.4:+29013643 MS.gene053436:CDS
GGAGGTGAAGTTGCCAAGGA+GGG 0.600925 1.4:+29014111 MS.gene053436:CDS
GGACAATACAATCCTTCTAA+CGG 0.602074 1.4:+29013104 MS.gene053436:CDS
TTGCCAAGGAGGGTGCCGTA+TGG 0.604907 1.4:+29014121 MS.gene053436:CDS
ATGAGAAGAAGGGAGAGTCA+AGG 0.607088 1.4:+29014044 MS.gene053436:CDS
GTGTTGAAAGGTGAGGAAGT+TGG 0.610000 1.4:+29013917 MS.gene053436:CDS
TGGCGGAGGTGAAGTTGCCA+AGG 0.613374 1.4:+29014107 MS.gene053436:CDS
GTGAAGATAGATGTGTTGAA+AGG 0.624379 1.4:+29013905 MS.gene053436:CDS
GGTCCACGTGGAAGAAACTG+TGG 0.628559 1.4:-29012873 None:intergenic
GCATGCCATCACCGTCGAAG+AGG 0.632272 1.4:-29012902 None:intergenic
GATAGATGTGTTGAAAGGTG+AGG 0.636429 1.4:+29013910 MS.gene053436:CDS
CATGCACGCGATCAATGCGT+GGG 0.637360 1.4:+29013625 MS.gene053436:CDS
AGCGCGAAACCTAGATTTCG+GGG 0.639612 1.4:+29013799 MS.gene053436:CDS
GGACCTTACCACCTCTTCGA+CGG 0.645380 1.4:+29012891 MS.gene053436:CDS
AATGCCAAAGATTTCAGGAG+TGG 0.648962 1.4:+29013883 MS.gene053436:CDS
AACCCACAGTTTCTTCCACG+TGG 0.651198 1.4:+29012870 MS.gene053436:CDS
GCCGGAGTTTGAGATTGTGG+CGG 0.652926 1.4:+29014090 MS.gene053436:CDS
TGATAAATGGTGATTACATG+GGG 0.658268 1.4:+29013822 MS.gene053436:CDS
TGAAGATTAATATCAAAACT+GGG 0.668404 1.4:+29013753 MS.gene053436:CDS
TCCAGATATGACACGTGCTG+CGG 0.676934 1.4:-29013084 None:intergenic
ATGTGTTGAGTAGTAATGCT+GGG 0.681095 1.4:-29012671 None:intergenic
GTCCACGTGGAAGAAACTGT+GGG 0.688234 1.4:-29012872 None:intergenic
TCTCTCCATTGAGCATACGA+TGG 0.695768 1.4:+29013694 MS.gene053436:CDS
TAAGCGCCGTTAAGTGACGG+TGG 0.696353 1.4:-29012831 None:intergenic
ATGGTGGCATAGGACCGTAA+CGG 0.707951 1.4:-29013328 None:intergenic
GACTCGTCACTAGCATAACG+AGG 0.742544 1.4:-29013566 None:intergenic
AAGAGGTGGTAAGGTCCACG+TGG 0.744047 1.4:-29012885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGATTAATATCAAAACT+GGG + chr1.4:29013753-29013772 MS.gene053436:CDS 20.0%
! AAACGGAAATAGGTTAAAAA+TGG - chr1.4:29013350-29013369 None:intergenic 25.0%
! AATAATCCATGAAAACCATA+CGG - chr1.4:29014139-29014158 None:intergenic 25.0%
! ACACAATGTGAAATCATTAA+AGG + chr1.4:29012801-29012820 MS.gene053436:CDS 25.0%
! ATTTGTAAGTTTGAACGTAA+CGG - chr1.4:29012971-29012990 None:intergenic 25.0%
! GTGAAGATTAATATCAAAAC+TGG + chr1.4:29013752-29013771 MS.gene053436:CDS 25.0%
! TTAATGATTTCACATTGTGT+TGG - chr1.4:29012801-29012820 None:intergenic 25.0%
!! AAAGAATAGGTTTGTTTATG+CGG + chr1.4:29013847-29013866 MS.gene053436:CDS 25.0%
!! TAAAAAGTATGCTGTGTTTA+CGG + chr1.4:29013451-29013470 MS.gene053436:CDS 25.0%
!!! TGCTTACTTGTTATTATGAT+GGG - chr1.4:29012468-29012487 None:intergenic 25.0%
!!! TTGCTTACTTGTTATTATGA+TGG - chr1.4:29012469-29012488 None:intergenic 25.0%
!!! TTGTTATTATGATGGGTTTT+GGG - chr1.4:29012461-29012480 None:intergenic 25.0%
!!! TTTTCATGGATTATTTGTGA+AGG + chr1.4:29014144-29014163 MS.gene053436:CDS 25.0%
ATTACATGGGGAAAAAGAAT+AGG + chr1.4:29013834-29013853 MS.gene053436:CDS 30.0%
ATTTGCATCAAAACGGAAAT+AGG - chr1.4:29013360-29013379 None:intergenic 30.0%
GTGATAAATGGTGATTACAT+GGG + chr1.4:29013821-29013840 MS.gene053436:CDS 30.0%
TAACACCATTTGCATCAAAA+CGG - chr1.4:29013367-29013386 None:intergenic 30.0%
TAAGCTTGATTTCATAAGGA+AGG - chr1.4:29013196-29013215 None:intergenic 30.0%
TGATAAATGGTGATTACATG+GGG + chr1.4:29013822-29013841 MS.gene053436:CDS 30.0%
TGTTAAACATAACGATGTTC+CGG + chr1.4:29013382-29013401 MS.gene053436:CDS 30.0%
! GGTAACAAACTTTTTGCTTT+AGG + chr1.4:29013161-29013180 MS.gene053436:CDS 30.0%
! TTGATGGATGAGATGTTAAA+GGG - chr1.4:29012513-29012532 None:intergenic 30.0%
! TTTGATGGATGAGATGTTAA+AGG - chr1.4:29012514-29012533 None:intergenic 30.0%
!! CACAGCATACTTTTTAGTAA+TGG - chr1.4:29013447-29013466 None:intergenic 30.0%
!! TATTTCCGTTTTGATGCAAA+TGG + chr1.4:29013359-29013378 MS.gene053436:CDS 30.0%
!! TTTTCCGTTTGAGATTGTAA+TGG - chr1.4:29012934-29012953 None:intergenic 30.0%
!!! CTTGTTATTATGATGGGTTT+TGG - chr1.4:29012462-29012481 None:intergenic 30.0%
!!! TTGTGGTTTTTTGAGGTTAT+GGG - chr1.4:29012637-29012656 None:intergenic 30.0%
!!! TTTGTGGTTTTTTGAGGTTA+TGG - chr1.4:29012638-29012657 None:intergenic 30.0%
!!! TTTTGAGACAAAACATGTCT+TGG - chr1.4:29012750-29012769 None:intergenic 30.0%
AAACAAAGCCAAACTTGTGT+TGG - chr1.4:29013141-29013160 None:intergenic 35.0%
AACGGTGATATCCAAACAAT+CGG + chr1.4:29013221-29013240 MS.gene053436:CDS 35.0%
AATCCAATGCCAAAGATTTC+AGG + chr1.4:29013878-29013897 MS.gene053436:CDS 35.0%
AATCCTCTTGACATGATTTC+TGG + chr1.4:29013491-29013510 MS.gene053436:CDS 35.0%
AATGTGTTGAGTAGTAATGC+TGG - chr1.4:29012675-29012694 None:intergenic 35.0%
ACTGCTCATCCTAAAATTGA+CGG + chr1.4:29013281-29013300 MS.gene053436:CDS 35.0%
ATGATTTCACATTGTGTTGG+AGG - chr1.4:29012798-29012817 None:intergenic 35.0%
ATGTGTTGAGTAGTAATGCT+GGG - chr1.4:29012674-29012693 None:intergenic 35.0%
ATTGTTTGGATATCACCGTT+TGG - chr1.4:29013221-29013240 None:intergenic 35.0%
CCATCAAAAGTTTCAAGGAT+CGG + chr1.4:29013536-29013555 MS.gene053436:CDS 35.0%
CGGAAATAGGTTAAAAATGG+TGG - chr1.4:29013347-29013366 None:intergenic 35.0%
GAAATCAAGCTTACACCAAA+CGG + chr1.4:29013203-29013222 MS.gene053436:CDS 35.0%
GCGAAATCATGAAGAAAAGA+AGG - chr1.4:29013425-29013444 None:intergenic 35.0%
GGACAATACAATCCTTCTAA+CGG + chr1.4:29013104-29013123 MS.gene053436:CDS 35.0%
GGTGATAAATGGTGATTACA+TGG + chr1.4:29013820-29013839 MS.gene053436:CDS 35.0%
GGTGTAAGCTTGATTTCATA+AGG - chr1.4:29013200-29013219 None:intergenic 35.0%
GTGAAGATAGATGTGTTGAA+AGG + chr1.4:29013905-29013924 MS.gene053436:CDS 35.0%
GTTTGCCGTTAAAATCTTGA+CGG - chr1.4:29013247-29013266 None:intergenic 35.0%
TACAAAATCGAAAACGAAGC+TGG + chr1.4:29012990-29013009 MS.gene053436:CDS 35.0%
TACAATCCTTCTAACGGAAT+TGG + chr1.4:29013110-29013129 MS.gene053436:CDS 35.0%
TAGGTTAAAAATGGTGGCAT+AGG - chr1.4:29013341-29013360 None:intergenic 35.0%
TATGTGCATGATGAGAAGAA+GGG + chr1.4:29014034-29014053 MS.gene053436:CDS 35.0%
TGAAACCAGAAAACACGTTT+GGG - chr1.4:29013028-29013047 None:intergenic 35.0%
TGATTTCACATTGTGTTGGA+GGG - chr1.4:29012797-29012816 None:intergenic 35.0%
TTATGTGCATGATGAGAAGA+AGG + chr1.4:29014033-29014052 MS.gene053436:CDS 35.0%
TTGAAACCAGAAAACACGTT+TGG - chr1.4:29013029-29013048 None:intergenic 35.0%
TTGTATGGAGAGGATTGTTA+TGG + chr1.4:29013947-29013966 MS.gene053436:CDS 35.0%
! AAAACACGTTTGGGATAAGT+TGG - chr1.4:29013019-29013038 None:intergenic 35.0%
! AAGAAAAGAAGGTCTTGTCA+TGG - chr1.4:29013414-29013433 None:intergenic 35.0%
! AGAAGAGGATGATGGTTATT+TGG + chr1.4:29014006-29014025 MS.gene053436:CDS 35.0%
! GAAACTTTTGCTTTCCGTTA+CGG + chr1.4:29013314-29013333 MS.gene053436:CDS 35.0%
!! AACACAAGTTTGGCTTTGTT+TGG + chr1.4:29013140-29013159 MS.gene053436:CDS 35.0%
!! CCTTGAAACTTTTGATGGAT+CGG - chr1.4:29013534-29013553 None:intergenic 35.0%
!! TGATGTTTGGGGTTTTTCTT+TGG - chr1.4:29012538-29012557 None:intergenic 35.0%
!! TTTTATTGGTGGGTCTATGA+AGG - chr1.4:29012715-29012734 None:intergenic 35.0%
!!! ATGGTGTTTGTGGTTTTTTG+AGG - chr1.4:29012644-29012663 None:intergenic 35.0%
!!! CTACAGATGGTTTTATTGGT+GGG - chr1.4:29012725-29012744 None:intergenic 35.0%
!!! GGATCTACAGATGGTTTTAT+TGG - chr1.4:29012729-29012748 None:intergenic 35.0%
!!! GGGTTTTTCTTTGGTTTTGA+TGG - chr1.4:29012529-29012548 None:intergenic 35.0%
!!! TCTACAGATGGTTTTATTGG+TGG - chr1.4:29012726-29012745 None:intergenic 35.0%
AACGGCGCTTACATAAGAAA+TGG + chr1.4:29012843-29012862 MS.gene053436:CDS 40.0%
AATGCCAAAGATTTCAGGAG+TGG + chr1.4:29013883-29013902 MS.gene053436:CDS 40.0%
ACATGTCTTGGATCTACAGA+TGG - chr1.4:29012738-29012757 None:intergenic 40.0%
ACTCCTGAAATCTTTGGCAT+TGG - chr1.4:29013884-29013903 None:intergenic 40.0%
ATGGATGAGATGTTAAAGGG+AGG - chr1.4:29012510-29012529 None:intergenic 40.0%
CACGCCATTACAATCTCAAA+CGG + chr1.4:29012927-29012946 MS.gene053436:CDS 40.0%
CATTTATCACCCCGAAATCT+AGG - chr1.4:29013811-29013830 None:intergenic 40.0%
CCGATCCATCAAAAGTTTCA+AGG + chr1.4:29013531-29013550 MS.gene053436:CDS 40.0%
CTAGATTTCGGGGTGATAAA+TGG + chr1.4:29013809-29013828 MS.gene053436:CDS 40.0%
GAAGTTGGATGTAGGTTGTA+TGG + chr1.4:29013932-29013951 MS.gene053436:CDS 40.0%
GATAGATGTGTTGAAAGGTG+AGG + chr1.4:29013910-29013929 MS.gene053436:CDS 40.0%
GCGTGCATGATATTAAATCC+TGG - chr1.4:29013614-29013633 None:intergenic 40.0%
GCTAAACCAATTCCGTTAGA+AGG - chr1.4:29013119-29013138 None:intergenic 40.0%
GTGTTTACGGATATTCAGCT+TGG + chr1.4:29013464-29013483 MS.gene053436:CDS 40.0%
TATGGAGAGGATTGTTATGG+TGG + chr1.4:29013950-29013969 MS.gene053436:CDS 40.0%
TGCTCAATGGAGAGAACATT+CGG - chr1.4:29013689-29013708 None:intergenic 40.0%
TGGATGAGATGTTAAAGGGA+GGG - chr1.4:29012509-29012528 None:intergenic 40.0%
TGGTTTAGCCAACACAAGTT+TGG + chr1.4:29013130-29013149 MS.gene053436:CDS 40.0%
TTCACCACTCCTGAAATCTT+TGG - chr1.4:29013890-29013909 None:intergenic 40.0%
! AGGTTTGTTTATGCGGCAAT+TGG + chr1.4:29013854-29013873 MS.gene053436:CDS 40.0%
! ATCGGCCGTCAAGATTTTAA+CGG + chr1.4:29013239-29013258 MS.gene053436:CDS 40.0%
! CCGATCCTTGAAACTTTTGA+TGG - chr1.4:29013539-29013558 None:intergenic 40.0%
! CTTATCCCAAACGTGTTTTC+TGG + chr1.4:29013020-29013039 MS.gene053436:CDS 40.0%
! GGTGTAGGAAGAGTTTTTGT+GGG - chr1.4:29012597-29012616 None:intergenic 40.0%
! GGTTTGTTTATGCGGCAATT+GGG + chr1.4:29013855-29013874 MS.gene053436:CDS 40.0%
! GTGTAGGAAGAGTTTTTGTG+GGG - chr1.4:29012596-29012615 None:intergenic 40.0%
! TGTAGGAAGAGTTTTTGTGG+GGG - chr1.4:29012595-29012614 None:intergenic 40.0%
! TGTCTGGGATTGTGATGTTT+GGG - chr1.4:29012550-29012569 None:intergenic 40.0%
!!! AGAGTCAAGGTTTTTGGTGA+TGG + chr1.4:29014057-29014076 MS.gene053436:CDS 40.0%
!!! TGGTTTTTTGAGGTTATGGG+TGG - chr1.4:29012634-29012653 None:intergenic 40.0%
!!! TTTTTTGAGGTTATGGGTGG+TGG - chr1.4:29012631-29012650 None:intergenic 40.0%
AAGGGAGGGATAGAAGTTGT+TGG - chr1.4:29012495-29012514 None:intergenic 45.0%
AAGGTGAGGAAGTTGGATGT+AGG + chr1.4:29013924-29013943 MS.gene053436:CDS 45.0%
AATCTTGACGGCCGATTGTT+TGG - chr1.4:29013235-29013254 None:intergenic 45.0%
ACACTTCCACCGTCACTTAA+CGG + chr1.4:29012825-29012844 MS.gene053436:CDS 45.0%
AGGATGAGCAGTCATACTCA+TGG - chr1.4:29013273-29013292 None:intergenic 45.0%
AGTAATGCTGGGAGTGATGA+TGG - chr1.4:29012663-29012682 None:intergenic 45.0%
ATGAAATGGTTCGATGTGCC+AGG + chr1.4:29013593-29013612 MS.gene053436:CDS 45.0%
ATGAGAAGAAGGGAGAGTCA+AGG + chr1.4:29014044-29014063 MS.gene053436:CDS 45.0%
CCACCAGAAATCATGTCAAG+AGG - chr1.4:29013497-29013516 None:intergenic 45.0%
GAGTGACATCACCAAGTTGT+CGG + chr1.4:29014168-29014187 MS.gene053436:CDS 45.0%
GATGGTGAAGAAGAGGATGA+TGG + chr1.4:29013998-29014017 MS.gene053436:CDS 45.0%
GTGACGAGTCGAAGATGAAA+TGG + chr1.4:29013579-29013598 MS.gene053436:CDS 45.0%
GTGTTGAAAGGTGAGGAAGT+TGG + chr1.4:29013917-29013936 MS.gene053436:CDS 45.0%
TCAGCGCGAAACCTAGATTT+CGG + chr1.4:29013797-29013816 MS.gene053436:CDS 45.0%
TCTCTCCATCGTATGCTCAA+TGG - chr1.4:29013702-29013721 None:intergenic 45.0%
TCTCTCCATTGAGCATACGA+TGG + chr1.4:29013694-29013713 MS.gene053436:CDS 45.0%
TGGATGTAGGTTGTATGGAG+AGG + chr1.4:29013937-29013956 MS.gene053436:CDS 45.0%
! ATGTAAGCGCCGTTAAGTGA+CGG - chr1.4:29012837-29012856 None:intergenic 45.0%
! CCTCTTGACATGATTTCTGG+TGG + chr1.4:29013494-29013513 MS.gene053436:CDS 45.0%
! GAAGGGAGAGTCAAGGTTTT+TGG + chr1.4:29014051-29014070 MS.gene053436:CDS 45.0%
! GGGTGTAGGAAGAGTTTTTG+TGG - chr1.4:29012598-29012617 None:intergenic 45.0%
! GGTCTTGTCATGGAGAAAAC+CGG - chr1.4:29013404-29013423 None:intergenic 45.0%
! GTAGGAAGAGTTTTTGTGGG+GGG - chr1.4:29012594-29012613 None:intergenic 45.0%
! GTCTGGGATTGTGATGTTTG+GGG - chr1.4:29012549-29012568 None:intergenic 45.0%
! GTGTCTGGGATTGTGATGTT+TGG - chr1.4:29012551-29012570 None:intergenic 45.0%
! TCTAGGTTTCGCGCTGATAA+TGG - chr1.4:29013794-29013813 None:intergenic 45.0%
! TTTGATGGATCGGAACCTAC+TGG - chr1.4:29013524-29013543 None:intergenic 45.0%
!! ATTTCTGGTGGTTCTCCAGT+AGG + chr1.4:29013506-29013525 MS.gene053436:CDS 45.0%
!!! GGTGGTGGTTTTTAGTGTCT+GGG - chr1.4:29012565-29012584 None:intergenic 45.0%
!!! TGGTGGTGGTTTTTAGTGTC+TGG - chr1.4:29012566-29012585 None:intergenic 45.0%
AACCCACAGTTTCTTCCACG+TGG + chr1.4:29012870-29012889 MS.gene053436:CDS 50.0%
AACGTAACGGCTACAGAGTG+TGG - chr1.4:29012958-29012977 None:intergenic 50.0%
AGCGCGAAACCTAGATTTCG+GGG + chr1.4:29013799-29013818 MS.gene053436:CDS 50.0%
ATGGTGGCATAGGACCGTAA+CGG - chr1.4:29013331-29013350 None:intergenic 50.0%
CAGCGCGAAACCTAGATTTC+GGG + chr1.4:29013798-29013817 MS.gene053436:CDS 50.0%
CCTAAAATTGACGGCGACAC+TGG + chr1.4:29013290-29013309 MS.gene053436:CDS 50.0%
CGTGGAAGAAACTGTGGGTT+TGG - chr1.4:29012870-29012889 None:intergenic 50.0%
CTTATAGCTTCTGCTGCACG+TGG + chr1.4:29013053-29013072 MS.gene053436:CDS 50.0%
GACTCGTCACTAGCATAACG+AGG - chr1.4:29013569-29013588 None:intergenic 50.0%
GGAGGGATAGAAGTTGTTGG+TGG - chr1.4:29012492-29012511 None:intergenic 50.0%
GTCCACGTGGAAGAAACTGT+GGG - chr1.4:29012875-29012894 None:intergenic 50.0%
TCCAGATATGACACGTGCTG+CGG - chr1.4:29013087-29013106 None:intergenic 50.0%
TCCGCCACAATCTCAAACTC+CGG - chr1.4:29014094-29014113 None:intergenic 50.0%
! CCAGTGTCGCCGTCAATTTT+AGG - chr1.4:29013293-29013312 None:intergenic 50.0%
! TTTGAGGTTATGGGTGGTGG+TGG - chr1.4:29012628-29012647 None:intergenic 50.0%
!! AGTTTTTGTGGGGGGTGTAG+TGG - chr1.4:29012586-29012605 None:intergenic 50.0%
!! GGGAGTGATGATGGTGTTTG+TGG - chr1.4:29012654-29012673 None:intergenic 50.0%
!!! AGGGTGCCGTATGGTTTTCA+TGG + chr1.4:29014130-29014149 MS.gene053436:CDS 50.0%
AAACCATACGGCACCCTCCT+TGG - chr1.4:29014127-29014146 None:intergenic 55.0%
AAGAGGTGGTAAGGTCCACG+TGG - chr1.4:29012888-29012907 None:intergenic 55.0%
ACCGCAGCACGTGTCATATC+TGG + chr1.4:29013083-29013102 MS.gene053436:CDS 55.0%
ACGCGATCAATGCGTGGGAT+GGG + chr1.4:29013630-29013649 MS.gene053436:CDS 55.0%
CATGCACGCGATCAATGCGT+GGG + chr1.4:29013625-29013644 MS.gene053436:CDS 55.0%
GAGGGAGGATGGTGAAGAAG+AGG + chr1.4:29013991-29014010 MS.gene053436:CDS 55.0%
GGACCTTACCACCTCTTCGA+CGG + chr1.4:29012891-29012910 MS.gene053436:CDS 55.0%
GGAGGTGAAGTTGCCAAGGA+GGG + chr1.4:29014111-29014130 MS.gene053436:CDS 55.0%
GGTCCACGTGGAAGAAACTG+TGG - chr1.4:29012876-29012895 None:intergenic 55.0%
GTGGGATGGGGAAGATGATG+AGG + chr1.4:29013643-29013662 MS.gene053436:CDS 55.0%
GTGTTGGAGGGAGTTCGTCT+AGG - chr1.4:29012785-29012804 None:intergenic 55.0%
TACCACCTCTTCGACGGTGA+TGG + chr1.4:29012897-29012916 MS.gene053436:CDS 55.0%
TATGACACGTGCTGCGGTGA+CGG - chr1.4:29013081-29013100 None:intergenic 55.0%
TCACCGTCGAAGAGGTGGTA+AGG - chr1.4:29012897-29012916 None:intergenic 55.0%
TCATGCACGCGATCAATGCG+TGG + chr1.4:29013624-29013643 MS.gene053436:CDS 55.0%
TCCTCCCTCGCCACGAAAAA+CGG - chr1.4:29013980-29013999 None:intergenic 55.0%
! GCCGGAGTTTGAGATTGTGG+CGG + chr1.4:29014090-29014109 MS.gene053436:CDS 55.0%
! GGAGTTTGAGATTGTGGCGG+AGG + chr1.4:29014093-29014112 MS.gene053436:CDS 55.0%
! GTCGCCGGAGTTTGAGATTG+TGG + chr1.4:29014087-29014106 MS.gene053436:CDS 55.0%
! TAAGCGCCGTTAAGTGACGG+TGG - chr1.4:29012834-29012853 None:intergenic 55.0%
! TTTTTCGTGGCGAGGGAGGA+TGG + chr1.4:29013980-29013999 MS.gene053436:CDS 55.0%
!! TTATGGGTGGTGGTGGTGGT+GGG - chr1.4:29012621-29012640 None:intergenic 55.0%
!! TTTTGTGGGGGGTGTAGTGG+TGG - chr1.4:29012583-29012602 None:intergenic 55.0%
!!! TGAGCCGTTTTTCGTGGCGA+GGG + chr1.4:29013973-29013992 MS.gene053436:CDS 55.0%
!!! TGGTGGTGAGCCGTTTTTCG+TGG + chr1.4:29013967-29013986 MS.gene053436:CDS 55.0%
CACGCGATCAATGCGTGGGA+TGG + chr1.4:29013629-29013648 MS.gene053436:CDS 60.0%
CGCGATCAATGCGTGGGATG+GGG + chr1.4:29013631-29013650 MS.gene053436:CDS 60.0%
CGGAGGTGAAGTTGCCAAGG+AGG + chr1.4:29014110-29014129 MS.gene053436:CDS 60.0%
GCATGCCATCACCGTCGAAG+AGG - chr1.4:29012905-29012924 None:intergenic 60.0%
TGCCATCACCGTCGAAGAGG+TGG - chr1.4:29012902-29012921 None:intergenic 60.0%
TGGCGGAGGTGAAGTTGCCA+AGG + chr1.4:29014107-29014126 MS.gene053436:CDS 60.0%
! GGAGGGAGTTCGTCTAGGAC+TGG - chr1.4:29012780-29012799 None:intergenic 60.0%
!! GAGGTTATGGGTGGTGGTGG+TGG - chr1.4:29012625-29012644 None:intergenic 60.0%
!! GGTGATGGATGCGAAGTCGC+CGG + chr1.4:29014072-29014091 MS.gene053436:CDS 60.0%
!! GTTATGGGTGGTGGTGGTGG+TGG - chr1.4:29012622-29012641 None:intergenic 60.0%
!! TATGGGTGGTGGTGGTGGTG+GGG - chr1.4:29012620-29012639 None:intergenic 60.0%
!! TTGCCAAGGAGGGTGCCGTA+TGG + chr1.4:29014121-29014140 MS.gene053436:CDS 60.0%
!!! GTGAGCCGTTTTTCGTGGCG+AGG + chr1.4:29013972-29013991 MS.gene053436:CDS 60.0%
! TGTGGGGGGTGTAGTGGTGG+TGG - chr1.4:29012580-29012599 None:intergenic 65.0%
!! ATGGGTGGTGGTGGTGGTGG+GGG - chr1.4:29012619-29012638 None:intergenic 65.0%
!!! GCCGTTTTTCGTGGCGAGGG+AGG + chr1.4:29013976-29013995 MS.gene053436:CDS 65.0%
!! GTGGTGGTGGTGGGGGGTGT+AGG - chr1.4:29012612-29012631 None:intergenic 70.0%
!! TGGGTGGTGGTGGTGGTGGG+GGG - chr1.4:29012618-29012637 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 29012453 29014198 29012453 ID=MS.gene053436
chr1.4 mRNA 29012453 29014198 29012453 ID=MS.gene053436.t1;Parent=MS.gene053436
chr1.4 exon 29012453 29014198 29012453 ID=MS.gene053436.t1.exon1;Parent=MS.gene053436.t1
chr1.4 CDS 29012453 29014198 29012453 ID=cds.MS.gene053436.t1;Parent=MS.gene053436.t1
Gene Sequence

>MS.gene053436

ATGATCCCAAAACCCATCATAATAACAAGTAAGCAACCACCAACAACTTCTATCCCTCCCTTTAACATCTCATCCATCAAAACCAAAGAAAAACCCCAAACATCACAATCCCAGACACTAAAAACCACCACCACTACACCCCCCACAAAAACTCTTCCTACACCCCCCACCACCACCACCACCCATAACCTCAAAAAACCACAAACACCATCATCACTCCCAGCATTACTACTCAACACATTCGACGACATCATCAACACCTTCATAGACCCACCAATAAAACCATCTGTAGATCCAAGACATGTTTTGTCTCAAAACTTTGCACCAGTCCTAGACGAACTCCCTCCAACACAATGTGAAATCATTAAAGGCACACTTCCACCGTCACTTAACGGCGCTTACATAAGAAATGGACCAAACCCACAGTTTCTTCCACGTGGACCTTACCACCTCTTCGACGGTGATGGCATGCTTCACGCCATTACAATCTCAAACGGAAAAGCCACACTCTGTAGCCGTTACGTTCAAACTTACAAATACAAAATCGAAAACGAAGCTGGTTACCAACTTATCCCAAACGTGTTTTCTGGTTTCAACTCGCTTATAGCTTCTGCTGCACGTGGCTCCGTCACCGCAGCACGTGTCATATCTGGACAATACAATCCTTCTAACGGAATTGGTTTAGCCAACACAAGTTTGGCTTTGTTTGGTAACAAACTTTTTGCTTTAGGAGAATCAGACCTTCCTTATGAAATCAAGCTTACACCAAACGGTGATATCCAAACAATCGGCCGTCAAGATTTTAACGGCAAACTCTCCATGAGTATGACTGCTCATCCTAAAATTGACGGCGACACTGGTGAAACTTTTGCTTTCCGTTACGGTCCTATGCCACCATTTTTAACCTATTTCCGTTTTGATGCAAATGGTGTTAAACATAACGATGTTCCGGTTTTCTCCATGACAAGACCTTCTTTTCTTCATGATTTCGCCATTACTAAAAAGTATGCTGTGTTTACGGATATTCAGCTTGGTATGAATCCTCTTGACATGATTTCTGGTGGTTCTCCAGTAGGTTCCGATCCATCAAAAGTTTCAAGGATCGGAATTATACCTCGTTATGCTAGTGACGAGTCGAAGATGAAATGGTTCGATGTGCCAGGATTTAATATCATGCACGCGATCAATGCGTGGGATGGGGAAGATGATGAGGATACTGTGACACTAATTGCTCCGAATGTTCTCTCCATTGAGCATACGATGGAGAGACTTGAGCTTGTGCATGCAATGATTGAGAAAGTGAAGATTAATATCAAAACTGGGATTGTATCAAGACAACCATTATCAGCGCGAAACCTAGATTTCGGGGTGATAAATGGTGATTACATGGGGAAAAAGAATAGGTTTGTTTATGCGGCAATTGGGAATCCAATGCCAAAGATTTCAGGAGTGGTGAAGATAGATGTGTTGAAAGGTGAGGAAGTTGGATGTAGGTTGTATGGAGAGGATTGTTATGGTGGTGAGCCGTTTTTCGTGGCGAGGGAGGATGGTGAAGAAGAGGATGATGGTTATTTGGTGAGTTATGTGCATGATGAGAAGAAGGGAGAGTCAAGGTTTTTGGTGATGGATGCGAAGTCGCCGGAGTTTGAGATTGTGGCGGAGGTGAAGTTGCCAAGGAGGGTGCCGTATGGTTTTCATGGATTATTTGTGAAGGAGAGTGACATCACCAAGTTGTCGGTGTCGTAG

Protein sequence

>MS.gene053436.t1

MIPKPIIITSKQPPTTSIPPFNISSIKTKEKPQTSQSQTLKTTTTTPPTKTLPTPPTTTTTHNLKKPQTPSSLPALLLNTFDDIINTFIDPPIKPSVDPRHVLSQNFAPVLDELPPTQCEIIKGTLPPSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAITISNGKATLCSRYVQTYKYKIENEAGYQLIPNVFSGFNSLIASAARGSVTAARVISGQYNPSNGIGLANTSLALFGNKLFALGESDLPYEIKLTPNGDIQTIGRQDFNGKLSMSMTAHPKIDGDTGETFAFRYGPMPPFLTYFRFDANGVKHNDVPVFSMTRPSFLHDFAITKKYAVFTDIQLGMNPLDMISGGSPVGSDPSKVSRIGIIPRYASDESKMKWFDVPGFNIMHAINAWDGEDDEDTVTLIAPNVLSIEHTMERLELVHAMIEKVKINIKTGIVSRQPLSARNLDFGVINGDYMGKKNRFVYAAIGNPMPKISGVVKIDVLKGEEVGCRLYGEDCYGGEPFFVAREDGEEEDDGYLVSYVHDEKKGESRFLVMDAKSPEFEIVAEVKLPRRVPYGFHGLFVKESDITKLSVS