AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30911

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30911.t1 MTR_1g066710 97.980 297 6 0 1 297 29 325 0.0 612
MS.gene30911.t1 MTR_1g066380 87.879 297 36 0 1 297 29 325 0.0 552
MS.gene30911.t1 MTR_1g066640 87.879 297 36 0 1 297 29 325 0.0 550
MS.gene30911.t1 MTR_1g066680 80.471 297 57 1 1 297 29 324 2.55e-180 500
MS.gene30911.t1 MTR_1g066380 87.451 255 32 0 43 297 3 257 9.49e-169 468
MS.gene30911.t1 MTR_4g132110 61.356 295 114 0 1 295 34 328 1.36e-137 392
MS.gene30911.t1 MTR_4g132110 60.333 300 114 1 1 295 34 333 2.66e-135 387
MS.gene30911.t1 MTR_5g021060 43.000 300 161 4 3 295 34 330 1.63e-77 239
MS.gene30911.t1 MTR_8g076820 40.000 300 170 4 3 295 34 330 1.78e-71 224
MS.gene30911.t1 MTR_4g132490 36.577 298 183 4 2 295 32 327 3.32e-69 218
MS.gene30911.t1 MTR_7g086820 38.255 298 174 4 1 295 22 312 4.01e-68 214
MS.gene30911.t1 MTR_5g014100 38.361 305 173 4 3 295 30 331 9.51e-66 209
MS.gene30911.t1 MTR_7g086870 37.838 296 177 3 1 296 24 312 9.35e-65 206
MS.gene30911.t1 MTR_7g029030 40.203 296 172 4 2 295 28 320 4.94e-64 204
MS.gene30911.t1 MTR_3g466200 37.584 298 177 5 2 295 28 320 7.21e-64 204
MS.gene30911.t1 MTR_2g084000 36.486 296 181 4 2 295 29 319 1.19e-63 203
MS.gene30911.t1 MTR_5g083860 36.271 295 184 3 2 295 34 325 1.36e-62 201
MS.gene30911.t1 MTR_6g027440 35.235 298 184 3 1 295 23 314 3.62e-62 199
MS.gene30911.t1 MTR_2g437770 38.742 302 168 6 1 296 52 342 1.53e-61 199
MS.gene30911.t1 MTR_4g087965 35.880 301 181 5 1 291 44 342 1.95e-61 198
MS.gene30911.t1 MTR_2g084110 34.915 295 186 3 2 295 28 317 3.91e-61 197
MS.gene30911.t1 MTR_3g092990 36.093 302 185 3 1 296 28 327 4.54e-61 197
MS.gene30911.t1 MTR_6g043240 36.486 296 177 5 3 296 46 332 5.55e-61 197
MS.gene30911.t1 MTR_2g084080 34.915 295 186 3 2 295 28 317 1.04e-60 196
MS.gene30911.t1 MTR_2g029830 36.634 303 181 4 3 297 32 331 1.22e-60 197
MS.gene30911.t1 MTR_3g094650 34.884 301 180 5 2 295 31 322 2.01e-60 195
MS.gene30911.t1 MTR_2g084010 35.000 300 180 5 2 295 28 318 2.65e-60 194
MS.gene30911.t1 MTR_7g093370 36.964 303 179 6 3 296 73 372 3.65e-60 196
MS.gene30911.t1 MTR_1g054205 35.314 303 184 4 3 296 28 327 4.33e-60 194
MS.gene30911.t1 MTR_2g084020 35.000 300 180 5 2 295 28 318 1.25e-59 193
MS.gene30911.t1 MTR_2g029820 38.158 304 175 5 2 296 32 331 2.80e-59 193
MS.gene30911.t1 MTR_2g029815 37.500 304 177 5 2 296 32 331 3.77e-59 192
MS.gene30911.t1 MTR_7g072510 32.542 295 193 3 2 295 23 312 1.35e-58 190
MS.gene30911.t1 MTR_4g133800 37.542 301 172 6 1 295 43 333 1.64e-58 191
MS.gene30911.t1 MTR_2g078610 34.259 324 179 5 2 291 79 402 2.93e-58 192
MS.gene30911.t1 MTR_1g090760 34.653 303 188 4 1 295 30 330 4.86e-58 189
MS.gene30911.t1 MTR_3g072190 35.254 295 185 3 2 295 29 318 6.53e-58 188
MS.gene30911.t1 MTR_0286s0010 35.216 301 187 4 1 295 36 334 1.38e-57 188
MS.gene30911.t1 MTR_6g008075 35.216 301 187 4 1 295 36 334 1.38e-57 188
MS.gene30911.t1 MTR_8g062780 37.874 301 178 3 2 295 26 324 2.84e-57 187
MS.gene30911.t1 MTR_2g067440 33.231 325 184 5 2 294 63 386 3.02e-57 189
MS.gene30911.t1 MTR_2g028980 37.542 301 177 4 3 295 33 330 3.17e-57 188
MS.gene30911.t1 MTR_5g022870 37.333 300 175 6 1 295 25 316 4.47e-57 186
MS.gene30911.t1 MTR_2g029800 37.624 303 178 5 2 296 32 331 4.57e-57 187
MS.gene30911.t1 MTR_2g077990 33.951 324 180 6 2 291 79 402 4.84e-57 189
MS.gene30911.t1 MTR_4g046713 35.117 299 185 3 3 295 31 326 9.31e-57 186
MS.gene30911.t1 MTR_4g125940 34.754 305 184 6 2 296 31 330 1.36e-56 186
MS.gene30911.t1 MTR_1g101830 34.783 299 184 4 2 295 30 322 1.43e-56 185
MS.gene30911.t1 MTR_4g029200 34.354 294 187 3 3 295 50 338 2.01e-56 185
MS.gene30911.t1 MTR_2g084090 33.108 296 191 4 2 295 28 318 2.24e-56 184
MS.gene30911.t1 MTR_1g115900 34.114 299 187 6 2 296 30 322 2.50e-56 185
MS.gene30911.t1 MTR_8g075100 36.120 299 178 5 2 295 29 319 6.25e-56 183
MS.gene30911.t1 MTR_2g029750 35.099 302 185 4 2 295 32 330 1.14e-55 184
MS.gene30911.t1 MTR_5g074970 35.811 296 186 3 2 295 33 326 2.23e-55 182
MS.gene30911.t1 MTR_6g043280 34.007 297 187 5 1 295 43 332 4.87e-55 181
MS.gene30911.t1 MTR_3g094670 34.915 295 186 4 3 295 32 322 5.43e-55 181
MS.gene30911.t1 MTR_1g086320 34.868 304 183 5 3 295 34 333 5.45e-55 181
MS.gene30911.t1 MTR_2g040000 35.526 304 182 7 3 296 33 332 6.79e-55 181
MS.gene30911.t1 MTR_1g038680 33.882 304 190 5 1 295 31 332 1.76e-54 180
MS.gene30911.t1 MTR_2g088770 35.762 302 183 5 1 295 28 325 2.49e-54 179
MS.gene30911.t1 MTR_4g031140 33.555 301 186 6 3 296 32 325 2.56e-54 180
MS.gene30911.t1 MTR_2g029740 34.884 301 185 4 3 295 33 330 4.78e-54 179
MS.gene30911.t1 MTR_4g030890 33.779 299 186 5 3 295 104 396 6.52e-54 181
MS.gene30911.t1 MTR_2g008710 33.553 304 186 6 1 295 29 325 7.47e-54 178
MS.gene30911.t1 MTR_0155s0040 32.770 296 189 4 1 295 29 315 1.31e-53 177
MS.gene30911.t1 MTR_7g107520 35.452 299 182 4 2 295 28 320 1.64e-53 177
MS.gene30911.t1 MTR_5g033470 33.887 301 191 5 3 295 77 377 2.22e-53 178
MS.gene30911.t1 MTR_3g094630 35.135 296 186 4 2 295 31 322 2.34e-53 177
MS.gene30911.t1 MTR_6g043460 33.106 293 186 5 2 291 39 324 3.47e-53 177
MS.gene30911.t1 MTR_1g022970 37.874 301 176 4 3 295 50 347 8.13e-53 176
MS.gene30911.t1 MTR_2g078280 33.439 314 175 5 2 281 79 392 8.92e-53 177
MS.gene30911.t1 MTR_4g083710 33.110 299 189 4 3 295 31 324 1.10e-52 175
MS.gene30911.t1 MTR_3g092990 34.437 302 179 4 1 296 28 316 1.36e-52 175
MS.gene30911.t1 MTR_2g029850 34.983 303 186 5 3 297 33 332 1.55e-52 176
MS.gene30911.t1 MTR_7g072480 33.220 295 191 3 2 295 27 316 2.58e-52 174
MS.gene30911.t1 MTR_4g029190 34.459 296 186 4 3 295 50 340 5.91e-52 174
MS.gene30911.t1 MTR_4g029170 36.364 297 181 5 2 295 30 321 6.86e-52 173
MS.gene30911.t1 MTR_2g029830 37.500 264 154 4 42 297 3 263 7.98e-52 172
MS.gene30911.t1 MTR_2g029560 32.673 303 193 4 3 297 28 327 1.58e-51 173
MS.gene30911.t1 MTR_5g074760 35.762 302 182 7 2 297 28 323 1.78e-51 172
MS.gene30911.t1 MTR_4g127670 34.459 296 183 5 3 291 28 319 2.53e-51 172
MS.gene30911.t1 MTR_1g086490 33.762 311 184 5 3 295 34 340 3.77e-51 172
MS.gene30911.t1 MTR_2g029730 33.882 304 188 5 3 297 29 328 3.93e-51 172
MS.gene30911.t1 MTR_4g125940 36.101 277 162 6 30 296 4 275 5.01e-51 169
MS.gene30911.t1 MTR_4g122640 32.776 299 193 4 2 295 41 336 8.83e-51 171
MS.gene30911.t1 MTR_3g467600 32.667 300 191 6 2 295 30 324 3.56e-50 169
MS.gene30911.t1 MTR_1g009750 34.740 308 180 6 1 295 29 328 5.37e-50 168
MS.gene30911.t1 MTR_5g074860 34.000 300 184 7 2 294 32 324 7.79e-50 168
MS.gene30911.t1 MTR_2g099175 31.788 302 195 4 1 295 38 335 1.46e-49 167
MS.gene30911.t1 MTR_4g029180 35.690 297 183 5 2 295 30 321 1.47e-49 167
MS.gene30911.t1 MTR_1g077000 31.864 295 193 3 1 295 41 327 2.92e-49 166
MS.gene30911.t1 MTR_3g072190 36.471 255 156 4 42 295 2 251 3.94e-49 164
MS.gene30911.t1 MTR_1g025980 32.776 299 189 4 1 294 26 317 4.05e-49 166
MS.gene30911.t1 MTR_5g074710 34.551 301 183 7 2 295 28 321 4.17e-49 166
MS.gene30911.t1 MTR_7g026990 30.847 295 197 3 3 296 35 323 4.45e-49 166
MS.gene30911.t1 MTR_4g074995 33.779 299 174 6 3 295 28 308 4.74e-49 165
MS.gene30911.t1 MTR_5g016010 35.099 302 184 5 2 294 30 328 5.68e-49 166
MS.gene30911.t1 MTR_4g114210 32.143 308 184 6 2 295 24 320 5.68e-49 166
MS.gene30911.t1 MTR_4g095450 34.354 294 186 4 2 291 30 320 6.40e-49 165
MS.gene30911.t1 MTR_2g029860 33.333 303 191 4 3 297 33 332 7.95e-49 166
MS.gene30911.t1 MTR_5g074740 34.667 300 184 7 2 295 28 321 1.82e-48 164
MS.gene30911.t1 MTR_5g049280 31.596 307 196 7 1 296 35 338 6.67e-48 163
MS.gene30911.t1 MTR_5g017850 32.333 300 194 5 2 295 30 326 1.92e-47 162
MS.gene30911.t1 MTR_3g105790 32.450 302 191 4 1 295 27 322 3.61e-47 161
MS.gene30911.t1 MTR_2g029910 33.333 306 186 6 2 295 33 332 1.75e-46 160
MS.gene30911.t1 MTR_5g017860 31.561 301 195 5 2 295 30 326 4.99e-46 158
MS.gene30911.t1 MTR_2g067450 32.673 303 187 6 2 294 14 309 6.90e-46 157
MS.gene30911.t1 MTR_3g466180 34.448 299 182 4 2 295 34 323 1.25e-45 157
MS.gene30911.t1 MTR_4g074990 30.952 294 186 4 3 295 28 305 6.10e-45 154
MS.gene30911.t1 MTR_2g008160 30.744 309 189 6 1 295 26 323 2.67e-41 145
MS.gene30911.t1 MTR_2g008730 29.934 304 173 7 1 295 29 301 3.51e-41 144
MS.gene30911.t1 MTR_1g009750 31.290 310 171 7 1 295 29 311 5.09e-39 139
MS.gene30911.t1 MTR_4g074980 31.718 227 153 2 2 227 28 253 5.40e-39 137
MS.gene30911.t1 MTR_4g074980 29.153 295 180 7 2 295 28 294 1.78e-38 137
MS.gene30911.t1 MTR_0147s0010 27.937 315 192 5 2 294 80 381 1.44e-36 134
MS.gene30911.t1 MTR_3g105790 32.099 243 155 3 60 295 7 246 1.26e-34 126
MS.gene30911.t1 MTR_5g074860 29.000 300 160 7 2 294 32 285 1.39e-31 119
MS.gene30911.t1 MTR_2g008160 29.412 306 162 8 1 295 26 288 9.66e-31 117
MS.gene30911.t1 MTR_2g008160 36.257 171 106 2 1 171 26 193 1.34e-29 112
MS.gene30911.t1 MTR_5g074700 32.751 229 131 7 71 295 5 214 3.78e-28 108
MS.gene30911.t1 MTR_2g078560 26.036 338 182 10 1 294 6 319 5.76e-25 102
MS.gene30911.t1 MTR_3g072210 33.684 190 119 4 108 295 54 238 4.02e-24 98.2
MS.gene30911.t1 MTR_7g086790 34.946 186 102 4 46 231 17 183 7.22e-24 96.7
MS.gene30911.t1 MTR_2g029880 31.000 200 118 4 104 296 3 189 1.89e-23 95.9
MS.gene30911.t1 MTR_3g072260 40.952 105 61 1 2 105 29 133 9.59e-22 89.4
MS.gene30911.t1 MTR_7g072490 25.991 227 108 4 46 271 3 170 3.41e-19 84.3
MS.gene30911.t1 MTR_5g058120 34.014 147 88 3 145 291 18 155 8.97e-18 81.3
MS.gene30911.t1 MTR_6g048160 43.662 71 37 1 38 108 22 89 9.87e-15 68.9
MS.gene30911.t1 MTR_1g089005 34.783 115 69 1 2 110 18 132 9.80e-14 68.2
MS.gene30911.t1 MTR_1g098320 39.241 79 48 0 217 295 46 124 3.81e-13 65.9
MS.gene30911.t1 MTR_3g462850 30.769 143 88 4 163 296 10 150 7.76e-12 62.4
MS.gene30911.t1 MTR_7g086785 28.244 131 94 0 42 172 1 131 1.14e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30911.t1 AT2G37130 76.351 296 69 1 1 295 1 296 1.03e-173 482
MS.gene30911.t1 AT2G37130 76.351 296 69 1 1 295 32 327 3.54e-173 482
MS.gene30911.t1 AT4G21960 57.576 297 126 0 1 297 33 329 5.98e-134 383
MS.gene30911.t1 AT4G36430 39.203 301 173 4 3 296 34 331 1.85e-70 221
MS.gene30911.t1 AT5G66390 39.735 302 170 5 2 295 36 333 2.42e-70 221
MS.gene30911.t1 AT2G18150 39.667 300 171 4 3 295 40 336 8.58e-70 219
MS.gene30911.t1 AT1G34510 38.983 295 169 5 2 295 25 309 2.59e-69 218
MS.gene30911.t1 AT3G50990 40.667 300 168 4 3 295 45 341 1.48e-68 217
MS.gene30911.t1 AT2G18140 38.206 301 176 4 2 295 38 335 7.82e-67 212
MS.gene30911.t1 AT5G17820 37.667 300 170 5 1 295 26 313 1.89e-65 207
MS.gene30911.t1 AT3G03670 37.624 303 175 3 1 295 25 321 2.52e-65 207
MS.gene30911.t1 AT4G08780 35.738 305 183 5 2 296 27 328 1.60e-64 206
MS.gene30911.t1 AT5G17820 38.000 300 169 5 1 295 79 366 3.18e-64 206
MS.gene30911.t1 AT5G40150 37.209 301 177 3 1 295 34 328 6.93e-64 204
MS.gene30911.t1 AT3G17070 35.762 302 183 6 2 295 41 339 5.70e-63 202
MS.gene30911.t1 AT4G08770 35.410 305 184 5 2 296 27 328 1.24e-62 201
MS.gene30911.t1 AT4G26010 36.610 295 176 5 2 295 25 309 2.06e-62 200
MS.gene30911.t1 AT4G26010 36.610 295 176 5 2 295 53 337 4.62e-62 200
MS.gene30911.t1 AT5G05340 35.811 296 184 4 2 295 33 324 2.08e-61 197
MS.gene30911.t1 AT4G17690 36.824 296 183 2 2 295 29 322 3.58e-61 197
MS.gene30911.t1 AT5G14130 36.333 300 181 3 2 295 35 330 4.85e-61 197
MS.gene30911.t1 AT5G14130 36.333 300 181 3 2 295 76 371 1.37e-60 197
MS.gene30911.t1 AT1G71695 35.714 294 180 4 2 291 47 335 1.45e-60 196
MS.gene30911.t1 AT5G15180 36.545 301 180 5 1 295 34 329 1.61e-60 196
MS.gene30911.t1 AT1G30870 37.171 304 173 6 1 296 53 346 1.70e-59 194
MS.gene30911.t1 AT2G22420 35.117 299 182 5 3 295 27 319 1.42e-58 191
MS.gene30911.t1 AT2G39040 37.500 304 180 6 1 295 48 350 1.70e-58 191
MS.gene30911.t1 AT2G35380 34.740 308 180 5 3 295 34 335 2.09e-58 190
MS.gene30911.t1 AT3G32980 34.098 305 188 5 3 297 35 336 3.64e-58 190
MS.gene30911.t1 AT5G64120 33.333 303 183 5 1 295 37 328 4.19e-58 189
MS.gene30911.t1 AT5G06730 33.113 302 191 4 3 296 37 335 6.68e-58 190
MS.gene30911.t1 AT1G24110 37.000 300 181 3 2 295 25 322 1.09e-57 188
MS.gene30911.t1 AT1G05260 34.323 303 188 5 1 296 28 326 2.01e-57 187
MS.gene30911.t1 AT4G31760 34.437 302 185 3 1 295 31 326 3.19e-57 187
MS.gene30911.t1 AT5G06720 33.444 302 190 4 3 296 36 334 7.33e-57 186
MS.gene30911.t1 AT3G28200 35.000 300 182 4 2 295 24 316 1.08e-56 185
MS.gene30911.t1 AT4G16270 36.093 302 181 6 1 295 52 348 1.09e-56 186
MS.gene30911.t1 AT3G49120 33.443 305 190 5 3 297 36 337 3.99e-56 185
MS.gene30911.t1 AT2G34060 35.548 301 182 5 2 292 45 343 4.49e-56 184
MS.gene30911.t1 AT1G14550 36.149 296 182 5 3 295 30 321 6.69e-56 183
MS.gene30911.t1 AT3G49110 33.115 305 191 5 3 297 37 338 1.59e-55 183
MS.gene30911.t1 AT4G33870 31.193 327 188 5 2 291 71 397 2.30e-55 184
MS.gene30911.t1 AT3G01190 35.762 302 179 7 1 295 28 321 3.73e-55 181
MS.gene30911.t1 AT2G38390 33.003 303 191 5 2 295 34 333 6.69e-55 182
MS.gene30911.t1 AT5G47000 35.017 297 188 3 2 295 36 330 9.09e-55 181
MS.gene30911.t1 AT2G24800 33.775 302 188 4 1 295 33 329 1.04e-54 181
MS.gene30911.t1 AT1G44970 37.542 301 177 4 3 295 49 346 2.54e-54 180
MS.gene30911.t1 AT5G24070 33.770 305 188 5 2 297 38 337 1.16e-53 178
MS.gene30911.t1 AT5G42180 34.783 299 181 5 2 294 26 316 1.26e-53 177
MS.gene30911.t1 AT1G49570 31.987 297 196 2 3 293 52 348 2.15e-53 178
MS.gene30911.t1 AT2G18980 33.555 301 188 4 2 295 28 323 2.44e-53 177
MS.gene30911.t1 AT2G38380 33.003 303 191 5 2 295 34 333 2.65e-53 177
MS.gene30911.t1 AT1G68850 33.007 306 194 6 1 296 32 336 1.10e-52 176
MS.gene30911.t1 AT5G51890 34.000 300 186 5 2 295 29 322 1.70e-52 175
MS.gene30911.t1 AT5G58390 34.680 297 187 5 2 295 24 316 2.30e-52 174
MS.gene30911.t1 AT4G30170 33.667 300 187 5 3 295 31 325 3.05e-52 174
MS.gene30911.t1 AT4G11290 33.871 310 180 8 1 295 27 326 6.20e-52 173
MS.gene30911.t1 AT1G14540 33.559 295 190 4 3 295 25 315 6.41e-52 173
MS.gene30911.t1 AT4G37520 33.663 303 189 5 2 295 30 329 6.63e-52 173
MS.gene30911.t1 AT2G41480 34.211 304 183 7 2 295 32 328 8.53e-52 173
MS.gene30911.t1 AT1G05240 33.553 304 187 5 1 295 28 325 1.26e-51 172
MS.gene30911.t1 AT1G05250 33.553 304 187 5 1 295 28 325 1.26e-51 172
MS.gene30911.t1 AT4G33420 34.459 296 184 4 1 295 39 325 1.65e-51 172
MS.gene30911.t1 AT5G39580 33.333 300 188 6 1 295 27 319 2.03e-51 172
MS.gene30911.t1 AT3G21770 35.235 298 182 7 1 291 31 324 2.24e-51 172
MS.gene30911.t1 AT4G33420 34.459 296 184 4 1 295 86 372 7.37e-51 172
MS.gene30911.t1 AT4G37520 33.663 303 186 6 2 295 30 326 5.52e-50 168
MS.gene30911.t1 AT5G58400 32.215 298 193 5 2 295 33 325 5.80e-50 168
MS.gene30911.t1 AT4G37530 33.333 303 190 5 2 295 30 329 8.94e-50 168
MS.gene30911.t1 AT3G17070 36.047 258 154 6 46 295 22 276 1.05e-49 166
MS.gene30911.t1 AT4G25980 33.115 305 188 7 1 295 28 326 1.28e-49 167
MS.gene30911.t1 AT5G19890 33.113 302 187 6 2 295 33 327 1.46e-48 164
MS.gene30911.t1 AT2G43480 32.013 303 192 5 2 295 38 335 1.75e-47 162
MS.gene30911.t1 AT3G49960 32.781 302 191 5 3 295 31 329 2.71e-47 161
MS.gene30911.t1 AT5G19880 31.475 305 195 5 2 295 28 329 2.92e-47 161
MS.gene30911.t1 AT5G22410 32.441 299 189 5 1 292 30 322 5.56e-47 160
MS.gene30911.t1 AT5G67400 33.663 303 189 5 2 295 30 329 2.37e-46 159
MS.gene30911.t1 AT1G77100 32.226 301 191 9 1 295 26 319 1.33e-43 151
MS.gene30911.t1 AT5G64110 31.894 301 189 6 3 295 38 330 1.89e-43 151
MS.gene30911.t1 AT4G37530 33.594 256 158 5 2 248 30 282 2.46e-41 144
MS.gene30911.t1 AT2G35380 32.129 249 149 4 61 295 5 247 2.69e-41 143
MS.gene30911.t1 AT5G64100 28.947 304 196 6 1 295 39 331 3.20e-38 137
MS.gene30911.t1 AT4G25980 37.576 165 100 2 1 165 73 234 2.93e-32 121
MS.gene30911.t1 AT5G39580 33.526 173 111 2 1 173 27 195 1.13e-27 107
MS.gene30911.t1 AT2G24800 34.356 163 104 1 1 163 33 192 5.50e-27 106
MS.gene30911.t1 AT3G42570 35.714 98 58 2 69 163 52 147 1.23e-13 67.8

Find 68 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTCTTCATTTCAAATTT+TGG 0.167361 1.2:-50191483 None:intergenic
TTGATGATCTCTTCTGCTTT+TGG 0.188067 1.2:-50190965 None:intergenic
CAACTACTACAAGAACATTT+TGG 0.233199 1.2:+50191930 MS.gene30911:CDS
TTCACATAAGGTGATGTTCT+TGG 0.257639 1.2:-50191997 None:intergenic
AAGGGTACATTGCATGAATT+TGG 0.274410 1.2:+50191762 MS.gene30911:CDS
CAAATAATCATATAACTAAT+TGG 0.281961 1.2:-50192145 None:intergenic
TTTCTCAACAGCAGCTTTGA+TGG 0.284452 1.2:-50191259 None:intergenic
GCATATGTGGGGTCTAGCTT+TGG 0.306524 1.2:-50191811 None:intergenic
CAGACATCAGAGAGAAGTTC+CGG 0.336911 1.2:+50191210 MS.gene30911:CDS
ACAGCATTTGGATCTGGATT+TGG 0.338871 1.2:-50191862 None:intergenic
CTTGCATATAGAACAGCATT+TGG 0.340382 1.2:-50191874 None:intergenic
CTAAGGATATGGAGTCATTA+TGG 0.354994 1.2:-50191560 None:intergenic
TTGGATCTGGATTTGGTGTT+GGG 0.357857 1.2:-50191855 None:intergenic
ACGAGAAAGCACTAAGGATA+TGG 0.361019 1.2:-50191571 None:intergenic
TCAGAGAATAATCCTCTTAC+CGG 0.371092 1.2:+50192081 MS.gene30911:CDS
TCTAGCTTTGGGTCCACTGT+GGG 0.394817 1.2:-50191799 None:intergenic
CATATGTGGGGTCTAGCTTT+GGG 0.402844 1.2:-50191810 None:intergenic
GAAGCCACTGTTGCTCTGTT+AGG 0.406342 1.2:+50191618 MS.gene30911:CDS
TCACCTTGATCTCCGGTAAG+AGG 0.408149 1.2:-50192093 None:intergenic
CCACTGTGGGGTATAGCCTC+TGG 0.422051 1.2:-50191786 None:intergenic
GATATGGAGTCATTATGGTT+TGG 0.435385 1.2:-50191555 None:intergenic
TCTAATTTCACCTTGATCTC+CGG 0.439413 1.2:-50192100 None:intergenic
TATAGAACAGCATTTGGATC+TGG 0.452583 1.2:-50191868 None:intergenic
TTTGGATCTGGATTTGGTGT+TGG 0.455653 1.2:-50191856 None:intergenic
ATGGAAACACGGCGGTTTCG+TGG 0.463264 1.2:+50191017 MS.gene30911:CDS
AGACATCAGAGAGAAGTTCC+GGG 0.476089 1.2:+50191211 MS.gene30911:CDS
TAGTTGTTGTCGATTATCAT+TGG 0.485138 1.2:-50191913 None:intergenic
AATCCTCTTACCGGAGATCA+AGG 0.499067 1.2:+50192090 MS.gene30911:CDS
GTCTAGCTTTGGGTCCACTG+TGG 0.510662 1.2:-50191800 None:intergenic
TCACCTTGACTATGCAATCA+TGG 0.511245 1.2:-50191054 None:intergenic
TTTAGATAGGCAGCATATGT+GGG 0.512711 1.2:-50191823 None:intergenic
CCAAAATTTGAAATGAAGAC+AGG 0.514773 1.2:+50191483 MS.gene30911:CDS
ATTCTTCTACCATTGTTACA+TGG 0.531531 1.2:-50191527 None:intergenic
CGCTAGAGATGGAATTGCCA+TGG 0.534187 1.2:+50191326 MS.gene30911:CDS
CCCCTACCGACTCTAAAAGC+AGG 0.535553 1.2:-50191173 None:intergenic
GTTGCTCTTTCCGCTAGAGA+TGG 0.543064 1.2:+50191315 MS.gene30911:CDS
GTCGGTAGGGGATGTAGTAT+CGG 0.545205 1.2:+50191185 MS.gene30911:CDS
TGGAAACACGGCGGTTTCGT+GGG 0.558064 1.2:+50191018 MS.gene30911:CDS
AGATCAAGGTGAAATTAGAA+AGG 0.559276 1.2:+50192104 MS.gene30911:CDS
CAGGAGGACACTCAGTGGGA+AGG 0.566579 1.2:+50191743 MS.gene30911:intron
ACTTCAATGAACAATTCTCA+AGG 0.567274 1.2:+50192043 MS.gene30911:CDS
ATACTTGAAGTTTCGCATCC+CGG 0.570050 1.2:-50191229 None:intergenic
CTAGCTTTGGGTCCACTGTG+GGG 0.577225 1.2:-50191798 None:intergenic
AGGAGGACACTCAGTGGGAA+GGG 0.577554 1.2:+50191744 MS.gene30911:intron
ATTGAACTGTATAACGAGCA+TGG 0.584782 1.2:+50190998 MS.gene30911:CDS
CAAAGAAAGCCATGTAACAA+TGG 0.587531 1.2:+50191518 MS.gene30911:CDS
TTGAAATGAAGACAGGACGA+AGG 0.588626 1.2:+50191490 MS.gene30911:CDS
ATGAAGACAGGACGAAGGGA+TGG 0.591567 1.2:+50191495 MS.gene30911:CDS
TGAAATGAAGACAGGACGAA+GGG 0.593661 1.2:+50191491 MS.gene30911:CDS
TTGAAAACGAGAAAGCACTA+AGG 0.594148 1.2:-50191577 None:intergenic
CTTCCATGATTGCATAGTCA+AGG 0.595237 1.2:+50191051 MS.gene30911:CDS
CCCTACCGACTCTAAAAGCA+GGG 0.599978 1.2:-50191172 None:intergenic
GTCGGCACATGATACTGTCA+AGG 0.601258 1.2:-50191289 None:intergenic
GTATAACGAGCATGGAAACA+CGG 0.609604 1.2:+50191006 MS.gene30911:CDS
GGTGCATTTGTATAGTTGGG+AGG 0.613238 1.2:+50191459 MS.gene30911:intron
CTTCAATGAACAATTCTCAA+GGG 0.615864 1.2:+50192044 MS.gene30911:CDS
GTTCTTCATCCACAGTGAGT+AGG 0.617420 1.2:-50191963 None:intergenic
CAATCAGGAGGACACTCAGT+GGG 0.618173 1.2:+50191739 MS.gene30911:intron
ATTGCATGAATTTGGTCCAG+AGG 0.619021 1.2:+50191770 MS.gene30911:CDS
AGCGGAAAGAGCAACAATGT+CGG 0.649811 1.2:-50191307 None:intergenic
CATGGCAATTCCATCTCTAG+CGG 0.653048 1.2:-50191325 None:intergenic
TTAGATAGGCAGCATATGTG+GGG 0.658332 1.2:-50191822 None:intergenic
AGTACCTAACAGAGCAACAG+TGG 0.665213 1.2:-50191622 None:intergenic
TCAATCAGGAGGACACTCAG+TGG 0.675558 1.2:+50191738 MS.gene30911:intron
TCGGCACATGATACTGTCAA+GGG 0.683470 1.2:-50191288 None:intergenic
ACACAAGGGCCTACTCACTG+TGG 0.693288 1.2:+50191954 MS.gene30911:CDS
CCAGAGGCTATACCCCACAG+TGG 0.772742 1.2:+50191786 MS.gene30911:CDS
TAACGAGCATGGAAACACGG+CGG 0.832552 1.2:+50191009 MS.gene30911:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAACATAAACATAATTAAT+CGG + chr1.2:50191705-50191724 MS.gene30911:intron 15.0%
!! TATAGAACATTGTAAATATT+GGG + chr1.2:50191420-50191439 MS.gene30911:intron 15.0%
!! TTATAGAACATTGTAAATAT+TGG + chr1.2:50191419-50191438 MS.gene30911:intron 15.0%
!!! AATTGATAATGATATATATG+TGG + chr1.2:50191124-50191143 MS.gene30911:intron 15.0%
!!! ATTCTAACATTTACTTTTTT+TGG + chr1.2:50191652-50191671 MS.gene30911:intron 15.0%
!!! ATTGATAATGATATATATGT+GGG + chr1.2:50191125-50191144 MS.gene30911:intron 15.0%
ACTTCAATGAACAATTCTCA+AGG + chr1.2:50192043-50192062 MS.gene30911:CDS 30.0%
AGATCAAGGTGAAATTAGAA+AGG + chr1.2:50192104-50192123 MS.gene30911:CDS 30.0%
ATCACCTTATGTGAAAAAGA+TGG + chr1.2:50192005-50192024 MS.gene30911:CDS 30.0%
ATTCTTCTACCATTGTTACA+TGG - chr1.2:50191530-50191549 None:intergenic 30.0%
CTTCAATGAACAATTCTCAA+GGG + chr1.2:50192044-50192063 MS.gene30911:CDS 30.0%
! CAACTACTACAAGAACATTT+TGG + chr1.2:50191930-50191949 MS.gene30911:CDS 30.0%
! CCAAAATTTGAAATGAAGAC+AGG + chr1.2:50191483-50191502 MS.gene30911:CDS 30.0%
! CCTGTCTTCATTTCAAATTT+TGG - chr1.2:50191486-50191505 None:intergenic 30.0%
! TAGTTGTTGTCGATTATCAT+TGG - chr1.2:50191916-50191935 None:intergenic 30.0%
! TTGGGTGTGAATTTTTATGT+TGG + chr1.2:50191438-50191457 MS.gene30911:intron 30.0%
!!! AAGAACATTTTGGAACACAA+GGG + chr1.2:50191940-50191959 MS.gene30911:CDS 30.0%
AAAAAGATGGCAGCTGATAA+TGG + chr1.2:50192018-50192037 MS.gene30911:CDS 35.0%
ATTGAACTGTATAACGAGCA+TGG + chr1.2:50190998-50191017 MS.gene30911:CDS 35.0%
CAAAGAAAGCCATGTAACAA+TGG + chr1.2:50191518-50191537 MS.gene30911:CDS 35.0%
CTAAGGATATGGAGTCATTA+TGG - chr1.2:50191563-50191582 None:intergenic 35.0%
CTTGCATATAGAACAGCATT+TGG - chr1.2:50191877-50191896 None:intergenic 35.0%
GATATGGAGTCATTATGGTT+TGG - chr1.2:50191558-50191577 None:intergenic 35.0%
GTTGGTGCATTTGTATAGTT+GGG + chr1.2:50191456-50191475 MS.gene30911:intron 35.0%
TATAGAACAGCATTTGGATC+TGG - chr1.2:50191871-50191890 None:intergenic 35.0%
TCAGAGAATAATCCTCTTAC+CGG + chr1.2:50192081-50192100 MS.gene30911:CDS 35.0%
TCTAATTTCACCTTGATCTC+CGG - chr1.2:50192103-50192122 None:intergenic 35.0%
TGTTGGTGCATTTGTATAGT+TGG + chr1.2:50191455-50191474 MS.gene30911:intron 35.0%
TTCACATAAGGTGATGTTCT+TGG - chr1.2:50192000-50192019 None:intergenic 35.0%
TTTAGATAGGCAGCATATGT+GGG - chr1.2:50191826-50191845 None:intergenic 35.0%
! AAGGGTACATTGCATGAATT+TGG + chr1.2:50191762-50191781 MS.gene30911:CDS 35.0%
! CGCAGCAGATATATCATTTT+TGG + chr1.2:50191090-50191109 MS.gene30911:intron 35.0%
! TTTTAGATAGGCAGCATATG+TGG - chr1.2:50191827-50191846 None:intergenic 35.0%
!! CTTTCTCGTTTTCAAGCTAT+TGG + chr1.2:50191585-50191604 MS.gene30911:CDS 35.0%
!! TGATGATCTCTTCTGCTTTT+GGG - chr1.2:50190967-50190986 None:intergenic 35.0%
!! TTGAAAACGAGAAAGCACTA+AGG - chr1.2:50191580-50191599 None:intergenic 35.0%
!! TTGATGATCTCTTCTGCTTT+TGG - chr1.2:50190968-50190987 None:intergenic 35.0%
!!! CAAGAACATTTTGGAACACA+AGG + chr1.2:50191939-50191958 MS.gene30911:CDS 35.0%
!!! TGGGCATCTAAGTTTTAGAT+AGG - chr1.2:50191839-50191858 None:intergenic 35.0%
ACAGCATTTGGATCTGGATT+TGG - chr1.2:50191865-50191884 None:intergenic 40.0%
ATACTTGAAGTTTCGCATCC+CGG - chr1.2:50191232-50191251 None:intergenic 40.0%
ATTGCATGAATTTGGTCCAG+AGG + chr1.2:50191770-50191789 MS.gene30911:CDS 40.0%
CTTCCATGATTGCATAGTCA+AGG + chr1.2:50191051-50191070 MS.gene30911:CDS 40.0%
GTATAACGAGCATGGAAACA+CGG + chr1.2:50191006-50191025 MS.gene30911:CDS 40.0%
TCACCTTGACTATGCAATCA+TGG - chr1.2:50191057-50191076 None:intergenic 40.0%
TGAAATGAAGACAGGACGAA+GGG + chr1.2:50191491-50191510 MS.gene30911:CDS 40.0%
TTAGATAGGCAGCATATGTG+GGG - chr1.2:50191825-50191844 None:intergenic 40.0%
TTGAAATGAAGACAGGACGA+AGG + chr1.2:50191490-50191509 MS.gene30911:CDS 40.0%
! GTCACTTTGATTCAATCAGG+AGG + chr1.2:50191727-50191746 MS.gene30911:intron 40.0%
! TCGGTCACTTTGATTCAATC+AGG + chr1.2:50191724-50191743 MS.gene30911:intron 40.0%
! TTTCTCAACAGCAGCTTTGA+TGG - chr1.2:50191262-50191281 None:intergenic 40.0%
!! ACGAGAAAGCACTAAGGATA+TGG - chr1.2:50191574-50191593 None:intergenic 40.0%
!! GCTGCCATCTTTTTCACATA+AGG - chr1.2:50192012-50192031 None:intergenic 40.0%
!! TTGGATCTGGATTTGGTGTT+GGG - chr1.2:50191858-50191877 None:intergenic 40.0%
!! TTTGGATCTGGATTTGGTGT+TGG - chr1.2:50191859-50191878 None:intergenic 40.0%
AATCCTCTTACCGGAGATCA+AGG + chr1.2:50192090-50192109 MS.gene30911:CDS 45.0%
AGACATCAGAGAGAAGTTCC+GGG + chr1.2:50191211-50191230 MS.gene30911:CDS 45.0%
AGCGGAAAGAGCAACAATGT+CGG - chr1.2:50191310-50191329 None:intergenic 45.0%
AGTACCTAACAGAGCAACAG+TGG - chr1.2:50191625-50191644 None:intergenic 45.0%
CAGACATCAGAGAGAAGTTC+CGG + chr1.2:50191210-50191229 MS.gene30911:CDS 45.0%
CATGGCAATTCCATCTCTAG+CGG - chr1.2:50191328-50191347 None:intergenic 45.0%
GGTGCATTTGTATAGTTGGG+AGG + chr1.2:50191459-50191478 MS.gene30911:intron 45.0%
GTGCGACTCTTAACATACCA+TGG - chr1.2:50191346-50191365 None:intergenic 45.0%
GTTCTTCATCCACAGTGAGT+AGG - chr1.2:50191966-50191985 None:intergenic 45.0%
TCGGCACATGATACTGTCAA+GGG - chr1.2:50191291-50191310 None:intergenic 45.0%
!! CATATGTGGGGTCTAGCTTT+GGG - chr1.2:50191813-50191832 None:intergenic 45.0%
!! TTCTGCTTTTGGGCAGCTTT+TGG - chr1.2:50190957-50190976 None:intergenic 45.0%
ATGAAGACAGGACGAAGGGA+TGG + chr1.2:50191495-50191514 MS.gene30911:CDS 50.0%
CAATCAGGAGGACACTCAGT+GGG + chr1.2:50191739-50191758 MS.gene30911:intron 50.0%
CGCTAGAGATGGAATTGCCA+TGG + chr1.2:50191326-50191345 MS.gene30911:CDS 50.0%
GAAGCCACTGTTGCTCTGTT+AGG + chr1.2:50191618-50191637 MS.gene30911:CDS 50.0%
GTCGGCACATGATACTGTCA+AGG - chr1.2:50191292-50191311 None:intergenic 50.0%
GTCGGTAGGGGATGTAGTAT+CGG + chr1.2:50191185-50191204 MS.gene30911:CDS 50.0%
GTTGCTCTTTCCGCTAGAGA+TGG + chr1.2:50191315-50191334 MS.gene30911:CDS 50.0%
TAACGAGCATGGAAACACGG+CGG + chr1.2:50191009-50191028 MS.gene30911:CDS 50.0%
TCAATCAGGAGGACACTCAG+TGG + chr1.2:50191738-50191757 MS.gene30911:intron 50.0%
TCACCTTGATCTCCGGTAAG+AGG - chr1.2:50192096-50192115 None:intergenic 50.0%
! GCATATGTGGGGTCTAGCTT+TGG - chr1.2:50191814-50191833 None:intergenic 50.0%
!! CCCTACCGACTCTAAAAGCA+GGG - chr1.2:50191175-50191194 None:intergenic 50.0%
!! TCTAGCTTTGGGTCCACTGT+GGG - chr1.2:50191802-50191821 None:intergenic 50.0%
!!! CCCTGCTTTTAGAGTCGGTA+GGG + chr1.2:50191172-50191191 MS.gene30911:CDS 50.0%
!!! CCTGCTTTTAGAGTCGGTAG+GGG + chr1.2:50191173-50191192 MS.gene30911:CDS 50.0%
!!! CGCATCCCTGCTTTTAGAGT+CGG + chr1.2:50191167-50191186 MS.gene30911:CDS 50.0%
!!! TCCCTGCTTTTAGAGTCGGT+AGG + chr1.2:50191171-50191190 MS.gene30911:CDS 50.0%
ACACAAGGGCCTACTCACTG+TGG + chr1.2:50191954-50191973 MS.gene30911:CDS 55.0%
AGGAGGACACTCAGTGGGAA+GGG + chr1.2:50191744-50191763 MS.gene30911:intron 55.0%
ATGGAAACACGGCGGTTTCG+TGG + chr1.2:50191017-50191036 MS.gene30911:CDS 55.0%
TGGAAACACGGCGGTTTCGT+GGG + chr1.2:50191018-50191037 MS.gene30911:CDS 55.0%
!! CCCCTACCGACTCTAAAAGC+AGG - chr1.2:50191176-50191195 None:intergenic 55.0%
!! CTAGCTTTGGGTCCACTGTG+GGG - chr1.2:50191801-50191820 None:intergenic 55.0%
!! GTCTAGCTTTGGGTCCACTG+TGG - chr1.2:50191803-50191822 None:intergenic 55.0%
CAGGAGGACACTCAGTGGGA+AGG + chr1.2:50191743-50191762 MS.gene30911:intron 60.0%
CCACTGTGGGGTATAGCCTC+TGG - chr1.2:50191789-50191808 None:intergenic 60.0%
CCAGAGGCTATACCCCACAG+TGG + chr1.2:50191786-50191805 MS.gene30911:CDS 60.0%
GGATGCGTCGCATGACTGCG+TGG - chr1.2:50191154-50191173 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 50190941 50192152 50190941 ID=MS.gene30911
chr1.2 mRNA 50190941 50192152 50190941 ID=MS.gene30911.t1;Parent=MS.gene30911
chr1.2 exon 50190941 50191072 50190941 ID=MS.gene30911.t1.exon1;Parent=MS.gene30911.t1
chr1.2 CDS 50190941 50191072 50190941 ID=cds.MS.gene30911.t1;Parent=MS.gene30911.t1
chr1.2 exon 50191159 50191347 50191159 ID=MS.gene30911.t1.exon2;Parent=MS.gene30911.t1
chr1.2 CDS 50191159 50191347 50191159 ID=cds.MS.gene30911.t1;Parent=MS.gene30911.t1
chr1.2 exon 50191474 50191639 50191474 ID=MS.gene30911.t1.exon3;Parent=MS.gene30911.t1
chr1.2 CDS 50191474 50191639 50191474 ID=cds.MS.gene30911.t1;Parent=MS.gene30911.t1
chr1.2 exon 50191746 50192152 50191746 ID=MS.gene30911.t1.exon4;Parent=MS.gene30911.t1
chr1.2 CDS 50191746 50192152 50191746 ID=cds.MS.gene30911.t1;Parent=MS.gene30911.t1
Gene Sequence

>MS.gene30911

ATGAACTACTACTCCAAAAGCTGCCCAAAAGCAGAAGAGATCATCAAACAAAAAGTCATTGAACTGTATAACGAGCATGGAAACACGGCGGTTTCGTGGGCTAGAAATCTCTTCCATGATTGCATAGTCAAGGTGAGTGTAAATGTAATCGCAGCAGATATATCATTTTTGGATTAAAGAAGCAATTGATAATGATATATATGTGGGTTTCCACGCAGTCATGCGACGCATCCCTGCTTTTAGAGTCGGTAGGGGATGTAGTATCGGAGCAGACATCAGAGAGAAGTTCCGGGATGCGAAACTTCAAGTATGTGAAAACCATCAAAGCTGCTGTTGAGAAAGAATGTCCCTTGACAGTATCATGTGCCGACATTGTTGCTCTTTCCGCTAGAGATGGAATTGCCATGGTATGTTAAGAGTCGCACATTAGAAATCTCACATTAAAAGTGAGACTTAAAATTCTAAAGATTCTTCTATCTTATAGAACATTGTAAATATTGGGTGTGAATTTTTATGTTGGTGCATTTGTATAGTTGGGAGGTCCAAAATTTGAAATGAAGACAGGACGAAGGGATGGCAAAGAAAGCCATGTAACAATGGTAGAAGAATTCATTCCAAACCATAATGACTCCATATCCTTAGTGCTTTCTCGTTTTCAAGCTATTGGTGTTGACGTTGAAGCCACTGTTGCTCTGTTAGGTACTACTGTGCATTCTAACATTTACTTTTTTTGGTCAATACATTCTAACATTGACTTCAAAAGTCAAACATAAACATAATTAATCGGTCACTTTGATTCAATCAGGAGGACACTCAGTGGGAAGGGTACATTGCATGAATTTGGTCCAGAGGCTATACCCCACAGTGGACCCAAAGCTAGACCCCACATATGCTGCCTATCTAAAACTTAGATGCCCAACACCAAATCCAGATCCAAATGCTGTTCTATATGCAAGAAATGATAGAAAAACGCCAATGATAATCGACAACAACTACTACAAGAACATTTTGGAACACAAGGGCCTACTCACTGTGGATGAAGAACTAGCTACTGATCCAAGAACATCACCTTATGTGAAAAAGATGGCAGCTGATAATGGATACTTCAATGAACAATTCTCAAGGGCTGTTCAATTGTTATCAGAGAATAATCCTCTTACCGGAGATCAAGGTGAAATTAGAAAGGATTGTCGTTACGTTAATGCCAATTAG
Protein sequence

>MS.gene30911.t1

MNYYSKSCPKAEEIIKQKVIELYNEHGNTAVSWARNLFHDCIVKSCDASLLLESVGDVVSEQTSERSSGMRNFKYVKTIKAAVEKECPLTVSCADIVALSARDGIAMLGGPKFEMKTGRRDGKESHVTMVEEFIPNHNDSISLVLSRFQAIGVDVEATVALLGGHSVGRVHCMNLVQRLYPTVDPKLDPTYAAYLKLRCPTPNPDPNAVLYARNDRKTPMIIDNNYYKNILEHKGLLTVDEELATDPRTSPYVKKMAADNGYFNEQFSRAVQLLSENNPLTGDQGEIRKDCRYVNAN