Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056925.t1 | XP_013467946.1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 5.50E-92 | 347.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056925.t1 | P0DI40 | 84.5 | 194 | 28 | 1 | 1 | 194 | 1 | 192 | 5.2e-83 | 308.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056925.t1 | A0A072VKN9 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 3.9e-92 | 347.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051996 | MS.gene056925 | 0.839607 | 1.43E-57 | -1.69E-46 |
| MS.gene052223 | MS.gene056925 | 0.822311 | 2.53E-53 | -1.69E-46 |
| MS.gene054277 | MS.gene056925 | 0.80752 | 4.86E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene056925 | 0.830678 | 2.56E-55 | -1.69E-46 |
| MS.gene056330 | MS.gene056925 | 0.812869 | 3.41E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene056925 | 0.836794 | 7.59E-57 | -1.69E-46 |
| MS.gene056922 | MS.gene056925 | 0.815696 | 8.10E-52 | -1.69E-46 |
| MS.gene056923 | MS.gene056925 | 0.945801 | 1.54E-104 | -1.69E-46 |
| MS.gene056924 | MS.gene056925 | 0.923112 | 4.08E-89 | -1.69E-46 |
| MS.gene056925 | MS.gene057261 | 0.810195 | 1.30E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene059328 | 0.803964 | 2.71E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene060087 | 0.803738 | 3.02E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene063988 | 0.829857 | 4.07E-55 | -1.69E-46 |
| MS.gene056925 | MS.gene065724 | 0.826823 | 2.20E-54 | -1.69E-46 |
| MS.gene056925 | MS.gene065728 | 0.803347 | 3.64E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene065729 | 0.912383 | 2.08E-83 | -1.69E-46 |
| MS.gene056925 | MS.gene06593 | 0.836637 | 8.33E-57 | -1.69E-46 |
| MS.gene056925 | MS.gene066937 | 0.810839 | 9.44E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene06756 | 0.812846 | 3.45E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene06805 | 0.836299 | 1.02E-56 | -1.69E-46 |
| MS.gene056925 | MS.gene074299 | 0.805172 | 1.52E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene08402 | 0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene09920 | 0.806001 | 1.02E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene23026 | 0.805587 | 1.24E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene23507 | 0.802907 | 4.49E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene24881 | 0.818123 | 2.31E-52 | -1.69E-46 |
| MS.gene056925 | MS.gene26285 | 0.804359 | 2.24E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene26289 | 0.805031 | 1.62E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene28548 | 0.802156 | 6.41E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene30666 | 0.80438 | 2.22E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene30911 | 0.801101 | 1.06E-48 | -1.69E-46 |
| MS.gene056925 | MS.gene33335 | 0.81442 | 1.55E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene35433 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene35460 | 0.805607 | 1.23E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene35690 | 0.821897 | 3.16E-53 | -1.69E-46 |
| MS.gene056925 | MS.gene40846 | 0.812184 | 4.82E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene43162 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene45463 | 0.809508 | 1.83E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene48169 | 0.809332 | 1.99E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene54611 | 0.807315 | 5.37E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene60581 | 0.802482 | 5.49E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene64584 | 0.828843 | 7.18E-55 | -1.69E-46 |
| MS.gene056925 | MS.gene65144 | 0.811339 | 7.35E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene67371 | 0.846188 | 2.54E-59 | -1.69E-46 |
| MS.gene056925 | MS.gene71342 | 0.809606 | 1.74E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene71346 | 0.804999 | 1.65E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene75460 | 0.829186 | 5.92E-55 | -1.69E-46 |
| MS.gene056925 | MS.gene79232 | 0.823587 | 1.28E-53 | -1.69E-46 |
| MS.gene056925 | MS.gene79518 | 0.812094 | 5.04E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene80293 | 0.802628 | 5.13E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene81770 | 0.870651 | 1.24E-66 | -1.69E-46 |
| MS.gene056925 | MS.gene81771 | 0.822558 | 2.22E-53 | -1.69E-46 |
| MS.gene056925 | MS.gene81774 | 0.844312 | 8.17E-59 | -1.69E-46 |
| MS.gene056925 | MS.gene83366 | 0.808652 | 2.79E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene84143 | 0.824803 | 6.62E-54 | -1.69E-46 |
| MS.gene056925 | MS.gene85750 | 0.824377 | 8.34E-54 | -1.69E-46 |
| MS.gene056925 | MS.gene87222 | 0.809115 | 2.22E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene88971 | 0.820906 | 5.35E-53 | -1.69E-46 |
| MS.gene056925 | MS.gene90407 | 0.8061 | 9.69E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene91221 | 0.810046 | 1.40E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene91222 | 0.809336 | 1.99E-50 | -1.69E-46 |
| MS.gene056925 | MS.gene91754 | 0.800897 | 1.16E-48 | -1.69E-46 |
| MS.gene056925 | MS.gene93200 | 0.812976 | 3.23E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene96782 | 0.800796 | 1.22E-48 | -1.69E-46 |
| MS.gene056925 | MS.gene97024 | 0.811805 | 5.83E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene97182 | 0.834598 | 2.73E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056925 | MS.gene05033 | PPI |
| MS.gene056925 | MS.gene26200 | PPI |
| MS.gene008354 | MS.gene056925 | PPI |
| MS.gene061583 | MS.gene056925 | PPI |
| MS.gene056925 | MS.gene049677 | PPI |
| MS.gene056925 | MS.gene81804 | PPI |
| MS.gene017305 | MS.gene056925 | PPI |
| MS.gene05032 | MS.gene056925 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056925.t1 | MTR_1g058570 | 96.907 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 2.18e-136 | 379 |
| MS.gene056925.t1 | MTR_1g058540 | 79.082 | 196 | 39 | 1 | 1 | 194 | 1 | 196 | 1.02e-100 | 289 |
| MS.gene056925.t1 | MTR_1g058560 | 87.692 | 195 | 23 | 1 | 1 | 194 | 1 | 195 | 3.34e-100 | 288 |
| MS.gene056925.t1 | MTR_2g086740 | 56.818 | 176 | 76 | 0 | 18 | 193 | 44 | 219 | 1.98e-57 | 180 |
| MS.gene056925.t1 | MTR_7g011090 | 49.180 | 183 | 89 | 1 | 12 | 194 | 8 | 186 | 6.88e-55 | 172 |
| MS.gene056925.t1 | MTR_4g081880 | 43.784 | 185 | 99 | 2 | 9 | 193 | 7 | 186 | 7.07e-49 | 157 |
| MS.gene056925.t1 | MTR_5g041900 | 46.108 | 167 | 90 | 0 | 28 | 194 | 20 | 186 | 8.98e-43 | 142 |
| MS.gene056925.t1 | MTR_2g086740 | 57.944 | 107 | 45 | 0 | 18 | 124 | 44 | 150 | 1.84e-32 | 114 |
| MS.gene056925.t1 | MTR_0004s0210 | 35.849 | 159 | 89 | 4 | 31 | 187 | 3 | 150 | 2.16e-18 | 78.6 |
| MS.gene056925.t1 | MTR_7g108130 | 28.049 | 164 | 113 | 3 | 31 | 191 | 24 | 185 | 8.65e-14 | 67.0 |
| MS.gene056925.t1 | MTR_0097s0070 | 31.356 | 118 | 79 | 2 | 71 | 187 | 69 | 185 | 9.25e-13 | 64.3 |
| MS.gene056925.t1 | MTR_8g089300 | 31.013 | 158 | 96 | 4 | 40 | 187 | 30 | 184 | 1.10e-11 | 61.2 |
| MS.gene056925.t1 | MTR_3g064310 | 32.203 | 118 | 77 | 2 | 74 | 191 | 77 | 191 | 4.79e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056925.t1 | AT2G36100 | 58.911 | 202 | 74 | 1 | 2 | 194 | 5 | 206 | 3.22e-72 | 217 |
| MS.gene056925.t1 | AT5G06200 | 61.929 | 197 | 70 | 2 | 2 | 193 | 5 | 201 | 9.82e-65 | 198 |
| MS.gene056925.t1 | AT3G11550 | 61.000 | 200 | 71 | 2 | 2 | 194 | 5 | 204 | 3.59e-63 | 194 |
| MS.gene056925.t1 | AT2G27370 | 58.929 | 168 | 69 | 0 | 26 | 193 | 52 | 219 | 5.76e-61 | 189 |
| MS.gene056925.t1 | AT5G15290 | 48.000 | 150 | 78 | 0 | 25 | 174 | 17 | 166 | 1.12e-47 | 154 |
| MS.gene056925.t1 | AT1G14160 | 40.606 | 165 | 98 | 0 | 30 | 194 | 45 | 209 | 1.35e-41 | 139 |
| MS.gene056925.t1 | AT1G03700 | 32.215 | 149 | 92 | 2 | 39 | 187 | 12 | 151 | 7.01e-19 | 79.7 |
| MS.gene056925.t1 | AT4G03540 | 33.058 | 121 | 72 | 2 | 55 | 175 | 28 | 139 | 2.78e-15 | 70.5 |
| MS.gene056925.t1 | AT1G17200 | 27.545 | 167 | 109 | 4 | 29 | 191 | 23 | 181 | 3.14e-14 | 68.6 |
| MS.gene056925.t1 | AT4G15630 | 28.492 | 179 | 108 | 5 | 25 | 191 | 19 | 189 | 7.25e-14 | 67.4 |
| MS.gene056925.t1 | AT5G44550 | 30.263 | 152 | 97 | 3 | 40 | 183 | 22 | 172 | 2.26e-12 | 63.2 |
| MS.gene056925.t1 | AT3G06390 | 28.571 | 133 | 90 | 2 | 36 | 163 | 37 | 169 | 4.21e-12 | 62.8 |
Find 44 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTAATGTTGCTTGATTC+TGG | 0.093003 | 1.4:+48621641 | None:intergenic |
| CTAGCCATTTGCAACCAATT+TGG | 0.242258 | 1.4:-48620950 | MS.gene056925:CDS |
| GTGATGTCTGCTTTGGCTCT+TGG | 0.283856 | 1.4:-48620854 | MS.gene056925:CDS |
| AAGGCCTGGAGGATGGAAAA+AGG | 0.302153 | 1.4:-48621591 | MS.gene056925:CDS |
| CCTTAGAATGAAATCCATTA+TGG | 0.309686 | 1.4:+48621562 | None:intergenic |
| CCATAATGGATTTCATTCTA+AGG | 0.312115 | 1.4:-48621562 | MS.gene056925:CDS |
| TTCCATCCTCCAGGCCTTGT+AGG | 0.319831 | 1.4:+48621596 | None:intergenic |
| TTACGATATCTAAGATAATA+AGG | 0.319981 | 1.4:+48621231 | None:intergenic |
| TGATGTCTGCTTTGGCTCTT+GGG | 0.345325 | 1.4:-48620853 | MS.gene056925:CDS |
| TATTGCCGCTGCCGCCTCAA+TGG | 0.357738 | 1.4:-48621519 | MS.gene056925:CDS |
| ATTGCCGCTGCCGCCTCAAT+GGG | 0.364904 | 1.4:-48621518 | MS.gene056925:CDS |
| TGGTAATGTTGCTTGATTCT+GGG | 0.370302 | 1.4:+48621642 | None:intergenic |
| ATGGATTTCATTCTAAGGTT+AGG | 0.379588 | 1.4:-48621557 | MS.gene056925:CDS |
| AGCTGCTTCCATAGTTTACT+TGG | 0.387801 | 1.4:-48621002 | MS.gene056925:CDS |
| GTTGGTTGTGATGTCTGCTT+TGG | 0.390211 | 1.4:-48620861 | MS.gene056925:CDS |
| GTGCACAGAAATCTCCAAAT+TGG | 0.409853 | 1.4:+48620936 | None:intergenic |
| ATGGAAATCAAGACACAAAC+TGG | 0.414877 | 1.4:-48620973 | MS.gene056925:CDS |
| AGCTGCAGCAGCACTTGAAG+TGG | 0.421850 | 1.4:+48621021 | None:intergenic |
| AAGCCTTGGTCCAGGCGCAT+GGG | 0.441787 | 1.4:+48621256 | None:intergenic |
| AAAGCCTTGGTCCAGGCGCA+TGG | 0.443522 | 1.4:+48621255 | None:intergenic |
| AGCGGCAATAGCCGCTGCTA+TGG | 0.444367 | 1.4:+48621532 | None:intergenic |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.445100 | 1.4:+48620946 | None:intergenic |
| TGGTAGGGATAGAACTAAGT+AGG | 0.473587 | 1.4:+48621304 | None:intergenic |
| TGTTCCCATTGAGGCGGCAG+CGG | 0.482406 | 1.4:+48621514 | None:intergenic |
| CTAGTTGCACCTACAAGGCC+TGG | 0.489392 | 1.4:-48621605 | MS.gene056925:CDS |
| ATTGTGTGCCAAGTAAACTA+TGG | 0.493367 | 1.4:+48620994 | None:intergenic |
| GCTTGATTCTGGGACATCAA+TGG | 0.503870 | 1.4:+48621652 | None:intergenic |
| TGGCTACGACAGAGAATGGT+AGG | 0.504458 | 1.4:+48621288 | None:intergenic |
| CAATTCTAGTTGCACCTACA+AGG | 0.507515 | 1.4:-48621610 | MS.gene056925:CDS |
| CACCTACAAGGCCTGGAGGA+TGG | 0.513895 | 1.4:-48621598 | MS.gene056925:CDS |
| CTGATCACTTGTTCCCATTG+AGG | 0.525536 | 1.4:+48621505 | None:intergenic |
| AGCCTTGGTCCAGGCGCATG+GGG | 0.531806 | 1.4:+48621257 | None:intergenic |
| ATGATGGCTACGACAGAGAA+TGG | 0.540767 | 1.4:+48621284 | None:intergenic |
| ATAAGGAAAAGCCTTGGTCC+AGG | 0.552077 | 1.4:+48621248 | None:intergenic |
| AAGATAATAAGGAAAAGCCT+TGG | 0.569952 | 1.4:+48621242 | None:intergenic |
| ATCACTTGTTCCCATTGAGG+CGG | 0.575884 | 1.4:+48621508 | None:intergenic |
| AGTTGCATCATTTATTACTG+TGG | 0.594258 | 1.4:-48620897 | MS.gene056925:CDS |
| ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1.4:-48620992 | MS.gene056925:CDS |
| AAGGTTAGGTGCCATAGCAG+CGG | 0.656083 | 1.4:-48621543 | MS.gene056925:CDS |
| GGCTACGACAGAGAATGGTA+GGG | 0.661247 | 1.4:+48621289 | None:intergenic |
| GCCTTGGTCCAGGCGCATGG+GGG | 0.663208 | 1.4:+48621258 | None:intergenic |
| AGAATCAAGCAACATTACCA+AGG | 0.678912 | 1.4:-48621639 | MS.gene056925:CDS |
| GATTTCTGTGCACAGACAAG+TGG | 0.683686 | 1.4:-48620926 | MS.gene056925:CDS |
| GTTGCACCTACAAGGCCTGG+AGG | 0.707990 | 1.4:-48621602 | MS.gene056925:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTAATAAAAATATGATAA+GGG | - | chr1.4:48621345-48621364 | MS.gene056925:intron | 10.0% |
| !! | TTGTTAATAAAAATATGATA+AGG | - | chr1.4:48621344-48621363 | MS.gene056925:intron | 10.0% |
| !! | ATTAAATTGTATACATCAAT+CGG | + | chr1.4:48621384-48621403 | None:intergenic | 15.0% |
| !! | GTTAATAAAAATATGATAAG+GGG | - | chr1.4:48621346-48621365 | MS.gene056925:intron | 15.0% |
| !!! | GTATTAGCTTATTATAATTA+TGG | + | chr1.4:48621136-48621155 | None:intergenic | 15.0% |
| !!! | AACTGTGTTTATGAAATTTT+AGG | - | chr1.4:48621447-48621466 | MS.gene056925:CDS | 20.0% |
| !!! | TTACGATATCTAAGATAATA+AGG | + | chr1.4:48621278-48621297 | None:intergenic | 20.0% |
| !!! | AACTAGAATTGTTTTTTCCT+TGG | + | chr1.4:48620887-48620906 | None:intergenic | 25.0% |
| !!! | CAGGTTTTTTGTTATTTCAA+TGG | - | chr1.4:48621167-48621186 | MS.gene056925:intron | 25.0% |
| AAGATAATAAGGAAAAGCCT+TGG | + | chr1.4:48621267-48621286 | None:intergenic | 30.0% | |
| AGTTGCATCATTTATTACTG+TGG | - | chr1.4:48621609-48621628 | MS.gene056925:CDS | 30.0% | |
| CCTTAGAATGAAATCCATTA+TGG | + | chr1.4:48620947-48620966 | None:intergenic | 30.0% | |
| GAAAGAACTGAGTGAAAAAA+GGG | + | chr1.4:48621032-48621051 | None:intergenic | 30.0% | |
| TAAAAATATGATAAGGGGTG+CGG | - | chr1.4:48621351-48621370 | MS.gene056925:intron | 30.0% | |
| TGAAAGAACTGAGTGAAAAA+AGG | + | chr1.4:48621033-48621052 | None:intergenic | 30.0% | |
| !! | ATGGATTTCATTCTAAGGTT+AGG | - | chr1.4:48620949-48620968 | MS.gene056925:CDS | 30.0% |
| !! | ATTTTAGGTGTTTCTTACTC+TGG | - | chr1.4:48621462-48621481 | MS.gene056925:CDS | 30.0% |
| !! | CCATAATGGATTTCATTCTA+AGG | - | chr1.4:48620944-48620963 | MS.gene056925:CDS | 30.0% |
| !!! | AAGTTTTGAGTGTTACATAC+TGG | + | chr1.4:48621089-48621108 | None:intergenic | 30.0% |
| !!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1.4:48621627-48621646 | MS.gene056925:CDS | 30.0% |
| AGAATCAAGCAACATTACCA+AGG | - | chr1.4:48620867-48620886 | MS.gene056925:CDS | 35.0% | |
| ATAGTTTACTTGGCACACAA+TGG | - | chr1.4:48621514-48621533 | MS.gene056925:CDS | 35.0% | |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1.4:48621563-48621582 | None:intergenic | 35.0% | |
| ATGGAAATCAAGACACAAAC+TGG | - | chr1.4:48621533-48621552 | MS.gene056925:CDS | 35.0% | |
| ATTGTGTGCCAAGTAAACTA+TGG | + | chr1.4:48621515-48621534 | None:intergenic | 35.0% | |
| GCTAATACTTGAAACAATGC+AGG | - | chr1.4:48621148-48621167 | MS.gene056925:intron | 35.0% | |
| TTTGAGTGTTACATACTGGA+AGG | + | chr1.4:48621085-48621104 | None:intergenic | 35.0% | |
| ! | TGGTAATGTTGCTTGATTCT+GGG | + | chr1.4:48620867-48620886 | None:intergenic | 35.0% |
| !! | TTGGTAATGTTGCTTGATTC+TGG | + | chr1.4:48620868-48620887 | None:intergenic | 35.0% |
| AGCTGCTTCCATAGTTTACT+TGG | - | chr1.4:48621504-48621523 | MS.gene056925:CDS | 40.0% | |
| CTAGCCATTTGCAACCAATT+TGG | - | chr1.4:48621556-48621575 | MS.gene056925:CDS | 40.0% | |
| GAAAAAGGGAACAGCCATAA+TGG | - | chr1.4:48620930-48620949 | MS.gene056925:CDS | 40.0% | |
| GTGCACAGAAATCTCCAAAT+TGG | + | chr1.4:48621573-48621592 | None:intergenic | 40.0% | |
| TGGTAGGGATAGAACTAAGT+AGG | + | chr1.4:48621205-48621224 | None:intergenic | 40.0% | |
| ! | CAATTCTAGTTGCACCTACA+AGG | - | chr1.4:48620896-48620915 | MS.gene056925:CDS | 40.0% |
| ATAAGGAAAAGCCTTGGTCC+AGG | + | chr1.4:48621261-48621280 | None:intergenic | 45.0% | |
| ATCACTTGTTCCCATTGAGG+CGG | + | chr1.4:48621001-48621020 | None:intergenic | 45.0% | |
| ATGATGGCTACGACAGAGAA+TGG | + | chr1.4:48621225-48621244 | None:intergenic | 45.0% | |
| CTGATCACTTGTTCCCATTG+AGG | + | chr1.4:48621004-48621023 | None:intergenic | 45.0% | |
| GATTTCTGTGCACAGACAAG+TGG | - | chr1.4:48621580-48621599 | MS.gene056925:CDS | 45.0% | |
| GTTGGTTGTGATGTCTGCTT+TGG | - | chr1.4:48621645-48621664 | MS.gene056925:CDS | 45.0% | |
| !! | GCTTGATTCTGGGACATCAA+TGG | + | chr1.4:48620857-48620876 | None:intergenic | 45.0% |
| !! | TGATGTCTGCTTTGGCTCTT+GGG | - | chr1.4:48621653-48621672 | MS.gene056925:CDS | 45.0% |
| AAGGCCTGGAGGATGGAAAA+AGG | - | chr1.4:48620915-48620934 | MS.gene056925:CDS | 50.0% | |
| AGGCCTGGAGGATGGAAAAA+GGG | - | chr1.4:48620916-48620935 | MS.gene056925:CDS | 50.0% | |
| GGCTACGACAGAGAATGGTA+GGG | + | chr1.4:48621220-48621239 | None:intergenic | 50.0% | |
| TGGCTACGACAGAGAATGGT+AGG | + | chr1.4:48621221-48621240 | None:intergenic | 50.0% | |
| ! | AAGGTTAGGTGCCATAGCAG+CGG | - | chr1.4:48620963-48620982 | MS.gene056925:CDS | 50.0% |
| ! | GTTCCCTTTTTCCATCCTCC+AGG | + | chr1.4:48620922-48620941 | None:intergenic | 50.0% |
| !! | GTGATGTCTGCTTTGGCTCT+TGG | - | chr1.4:48621652-48621671 | MS.gene056925:CDS | 50.0% |
| AGCTGCAGCAGCACTTGAAG+TGG | + | chr1.4:48621488-48621507 | None:intergenic | 55.0% | |
| CTAGTTGCACCTACAAGGCC+TGG | - | chr1.4:48620901-48620920 | MS.gene056925:CDS | 55.0% | |
| ! | TTCCATCCTCCAGGCCTTGT+AGG | + | chr1.4:48620913-48620932 | None:intergenic | 55.0% |
| AAAGCCTTGGTCCAGGCGCA+TGG | + | chr1.4:48621254-48621273 | None:intergenic | 60.0% | |
| AAGCCTTGGTCCAGGCGCAT+GGG | + | chr1.4:48621253-48621272 | None:intergenic | 60.0% | |
| AGCGGCAATAGCCGCTGCTA+TGG | + | chr1.4:48620977-48620996 | None:intergenic | 60.0% | |
| ATTGCCGCTGCCGCCTCAAT+GGG | - | chr1.4:48620988-48621007 | MS.gene056925:CDS | 60.0% | |
| CACCTACAAGGCCTGGAGGA+TGG | - | chr1.4:48620908-48620927 | MS.gene056925:CDS | 60.0% | |
| GTTGCACCTACAAGGCCTGG+AGG | - | chr1.4:48620904-48620923 | MS.gene056925:CDS | 60.0% | |
| TATTGCCGCTGCCGCCTCAA+TGG | - | chr1.4:48620987-48621006 | MS.gene056925:CDS | 60.0% | |
| TGTTCCCATTGAGGCGGCAG+CGG | + | chr1.4:48620995-48621014 | None:intergenic | 60.0% | |
| AGCCTTGGTCCAGGCGCATG+GGG | + | chr1.4:48621252-48621271 | None:intergenic | 65.0% | |
| ATCATACGCCCCCATGCGCC+TGG | - | chr1.4:48621240-48621259 | MS.gene056925:CDS | 65.0% | |
| ! | AGGCGCATGGGGGCGTATGA+TGG | + | chr1.4:48621241-48621260 | None:intergenic | 65.0% |
| GCCTTGGTCCAGGCGCATGG+GGG | + | chr1.4:48621251-48621270 | None:intergenic | 70.0% | |
| GCCCCCATGCGCCTGGACCA+AGG | - | chr1.4:48621247-48621266 | MS.gene056925:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 48620844 | 48621684 | 48620844 | ID=MS.gene056925 |
| chr1.4 | mRNA | 48620844 | 48621684 | 48620844 | ID=MS.gene056925.t1;Parent=MS.gene056925 |
| chr1.4 | exon | 48621440 | 48621684 | 48621440 | ID=MS.gene056925.t1.exon1;Parent=MS.gene056925.t1 |
| chr1.4 | CDS | 48621440 | 48621684 | 48621440 | ID=cds.MS.gene056925.t1;Parent=MS.gene056925.t1 |
| chr1.4 | exon | 48621235 | 48621358 | 48621235 | ID=MS.gene056925.t1.exon2;Parent=MS.gene056925.t1 |
| chr1.4 | CDS | 48621235 | 48621358 | 48621235 | ID=cds.MS.gene056925.t1;Parent=MS.gene056925.t1 |
| chr1.4 | exon | 48620844 | 48621059 | 48620844 | ID=MS.gene056925.t1.exon3;Parent=MS.gene056925.t1 |
| chr1.4 | CDS | 48620844 | 48621059 | 48620844 | ID=cds.MS.gene056925.t1;Parent=MS.gene056925.t1 |
| Gene Sequence |
| Protein sequence |
