AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30953

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30953.t1 MTR_0053s0030 90.576 191 11 2 1 188 1 187 1.01e-114 342
MS.gene30953.t1 MTR_4g026450 52.020 198 79 5 2 188 7 199 7.05e-52 177
MS.gene30953.t1 MTR_6g038750 38.710 93 55 2 93 184 78 169 1.28e-12 65.9
MS.gene30953.t1 MTR_1g046620 29.530 149 100 2 37 183 78 223 5.17e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30953.t1 AT1G79600 64.407 118 39 1 74 188 77 194 1.28e-45 160
MS.gene30953.t1 AT3G24190 35.870 92 59 0 92 183 140 231 3.92e-13 67.4

Find 46 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGACCATATTCACAAATT+TGG 0.128326 2.2:-5350819 MS.gene30953:CDS
GAATTGTTGGCTTCTAAATA+TGG 0.152719 2.2:-5351958 MS.gene30953:CDS
CATTTGCCCACCTGAATATT+TGG 0.168236 2.2:-5350750 MS.gene30953:CDS
TGGTCCCAAATTTGTGAATA+TGG 0.278942 2.2:+5350814 None:intergenic
GAGAGTTCTTCCAAATATTC+AGG 0.282444 2.2:+5350740 None:intergenic
TATTTAGAAGCCAACAATTC+AGG 0.302555 2.2:+5351961 None:intergenic
AAGACCATATTCACAAATTT+GGG 0.307258 2.2:-5350818 MS.gene30953:CDS
GGAAGAACTCTCTGAGCTTC+AGG 0.314029 2.2:-5350729 MS.gene30953:intron
GTGAGTGCTTTGGGTTCATT+TGG 0.326353 2.2:-5350911 MS.gene30953:CDS
GTTGAAATTGTGAGTGCTTT+GGG 0.327077 2.2:-5350920 MS.gene30953:CDS
ATCGTACCTTTGGTTAGAAA+TGG 0.357079 2.2:-5352081 MS.gene30953:CDS
GACACTTGATAAGAATAAAA+AGG 0.358611 2.2:-5350858 MS.gene30953:CDS
TCTGTATGGTCCTGAATTGT+TGG 0.372909 2.2:-5351971 MS.gene30953:CDS
TGTTGAAATTGTGAGTGCTT+TGG 0.381233 2.2:-5350921 MS.gene30953:CDS
AATTGTTGGCTTCTAAATAT+GGG 0.410967 2.2:-5351957 MS.gene30953:CDS
GCCACTGTTTCCTGTGATAG+TGG 0.427336 2.2:-5349996 MS.gene30953:CDS
GCTATTAATGCTACTCTGTA+TGG 0.440035 2.2:-5351985 MS.gene30953:CDS
TACAAGTAACATCGTACCTT+TGG 0.441869 2.2:-5352091 MS.gene30953:CDS
TCGTTGGATAGGAATTGAAC+TGG 0.469500 2.2:+5352185 None:intergenic
TATTCAGGTGGGCAAATGTC+AGG 0.469978 2.2:+5350755 None:intergenic
CTGAAACGACGTCGTTGGAT+AGG 0.472321 2.2:+5352174 None:intergenic
TGACCTAACTTCACAAAAGT+TGG 0.472861 2.2:+5350794 None:intergenic
TGAGTGCTTTGGGTTCATTT+GGG 0.477483 2.2:-5350910 MS.gene30953:CDS
CACAACCATGTTATTCATCA+TGG 0.483949 2.2:-5352224 MS.gene30953:CDS
CAAAATTCTTGCTGCTGTGG+TGG 0.496154 2.2:-5352127 MS.gene30953:CDS
ATATCATCAGCACGGTTCAA+TGG 0.498271 2.2:+5352036 None:intergenic
TATGGTTTAGGTTGTACAAA+GGG 0.520941 2.2:-5350945 MS.gene30953:intron
AAAGGTACGATGTTACTTGT+AGG 0.523602 2.2:+5352093 None:intergenic
TTTGTTCCATTTCTAACCAA+AGG 0.539371 2.2:+5352075 None:intergenic
TGCCTCTGAAACGACGTCGT+TGG 0.544692 2.2:+5352169 None:intergenic
ATCCAACGACGTCGTTTCAG+AGG 0.546238 2.2:-5352171 MS.gene30953:CDS
TCTCAAAATTCTTGCTGCTG+TGG 0.563774 2.2:-5352130 MS.gene30953:CDS
TTGGTCTACTCCACTATCAC+AGG 0.564955 2.2:+5349986 None:intergenic
TAGGTCAAGGATCGTCCACT+AGG 0.585067 2.2:-5350778 MS.gene30953:CDS
ATATGGGTCCCAACGCATCA+AGG 0.588051 2.2:-5351941 MS.gene30953:intron
TGGGCAAATGTCAGGCCTAG+TGG 0.591643 2.2:+5350763 None:intergenic
AGTTCTTCCAAATATTCAGG+TGG 0.604803 2.2:+5350743 None:intergenic
TGCTGATGATATTCAAGCTG+AGG 0.610385 2.2:-5352025 MS.gene30953:CDS
TTATGGTTTAGGTTGTACAA+AGG 0.612841 2.2:-5350946 MS.gene30953:intron
CGAGTCCATGATGAATAACA+TGG 0.613087 2.2:+5352219 None:intergenic
TCCACTATCACAGGAAACAG+TGG 0.629471 2.2:+5349995 None:intergenic
GTTCTTCCAAATATTCAGGT+GGG 0.636431 2.2:+5350744 None:intergenic
CGTTGGATAGGAATTGAACT+GGG 0.640236 2.2:+5352186 None:intergenic
TGTTATTCATCATGGACTCG+TGG 0.651746 2.2:-5352216 MS.gene30953:CDS
CAGCTTGAATATCATCAGCA+CGG 0.663261 2.2:+5352028 None:intergenic
TCAATGGAAGTGTAAGAACA+CGG 0.678089 2.2:+5352052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAATACAAACAAAATA+GGG - chr2.2:5350421-5350440 MS.gene30953:intron 10.0%
!! TTATATAATACAAACAAAAT+AGG - chr2.2:5350420-5350439 MS.gene30953:intron 10.0%
!! ATAAAAAATTGTAGTCAATA+AGG + chr2.2:5350850-5350869 None:intergenic 15.0%
!! TGATTATTATGTACTTTATT+TGG - chr2.2:5350657-5350676 MS.gene30953:intron 15.0%
!!! TTCAAATATACATAACTTTT+CGG + chr2.2:5350926-5350945 None:intergenic 15.0%
!! AAAATGCAACTATATAAATG+AGG + chr2.2:5351552-5351571 None:intergenic 20.0%
!! AAATGCAACTATATAAATGA+GGG + chr2.2:5351551-5351570 None:intergenic 20.0%
!! CAAATTTCAACAACAATATT+TGG + chr2.2:5351140-5351159 None:intergenic 20.0%
! AACCAATAAAACCAAAATCA+GGG + chr2.2:5351270-5351289 None:intergenic 25.0%
! AACTATATAAATGAGGGAAA+GGG + chr2.2:5351545-5351564 None:intergenic 25.0%
! AAGACCATATTCACAAATTT+GGG - chr2.2:5351416-5351435 MS.gene30953:intron 25.0%
! ATGTATATTTGAACACAGTT+TGG - chr2.2:5350933-5350952 MS.gene30953:CDS 25.0%
! CAAGAAAGAACTTTCAAAAA+GGG + chr2.2:5350509-5350528 None:intergenic 25.0%
! GACACTTGATAAGAATAAAA+AGG - chr2.2:5351376-5351395 MS.gene30953:intron 25.0%
! TAACCAATAAAACCAAAATC+AGG + chr2.2:5351271-5351290 None:intergenic 25.0%
! TCAAGAAAGAACTTTCAAAA+AGG + chr2.2:5350510-5350529 None:intergenic 25.0%
! TGTCATTAGTTACGATATTT+AGG + chr2.2:5351002-5351021 None:intergenic 25.0%
! TTGAATTCAAGCTCATAAAA+AGG + chr2.2:5351748-5351767 None:intergenic 25.0%
! TTTCAACAACAATATTTGGA+CGG + chr2.2:5351136-5351155 None:intergenic 25.0%
!! ATGAATTCAAGTTTGAGTTA+AGG + chr2.2:5351177-5351196 None:intergenic 25.0%
!!! AATTGTTGGCTTCTAAATAT+GGG - chr2.2:5350277-5350296 MS.gene30953:intron 25.0%
!!! GATTTTGGTTTTATTGGTTA+TGG - chr2.2:5351271-5351290 MS.gene30953:intron 25.0%
!!! TGTTTTTAGAGCAAAAGAAT+GGG - chr2.2:5351354-5351373 MS.gene30953:intron 25.0%
AACTAATGACATTCATGATG+TGG - chr2.2:5351011-5351030 MS.gene30953:intron 30.0%
ACATATCTTACATCTGTTCT+AGG - chr2.2:5352027-5352046 MS.gene30953:CDS 30.0%
AGACGGTTAATGAATATAAC+AGG + chr2.2:5351076-5351095 None:intergenic 30.0%
ATAGTACTAGTTCATACATG+TGG - chr2.2:5350700-5350719 MS.gene30953:intron 30.0%
ATATTTGAACACAGTTTGGT+TGG - chr2.2:5350937-5350956 MS.gene30953:CDS 30.0%
ATTCAAGCTCTTGAACAATT+CGG - chr2.2:5351762-5351781 MS.gene30953:intron 30.0%
CAACTATATAAATGAGGGAA+AGG + chr2.2:5351546-5351565 None:intergenic 30.0%
GAACAGATGTAAGATATGTT+TGG + chr2.2:5352026-5352045 None:intergenic 30.0%
GAAGACCATATTCACAAATT+TGG - chr2.2:5351415-5351434 MS.gene30953:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr2.2:5351919-5351938 MS.gene30953:intron 30.0%
GTAGTACTTGATTCACTAAT+TGG - chr2.2:5350530-5350549 MS.gene30953:intron 30.0%
TATTTAGAAGCCAACAATTC+AGG + chr2.2:5350276-5350295 None:intergenic 30.0%
TCATAAGGCGAAAAAAGTAA+TGG + chr2.2:5350331-5350350 None:intergenic 30.0%
TGATGTGGTTAATTACAATC+AGG - chr2.2:5351026-5351045 MS.gene30953:intron 30.0%
TTTGTTCCATTTCTAACCAA+AGG + chr2.2:5350162-5350181 None:intergenic 30.0%
! GTACTTTATTTGGTACTTGT+AGG - chr2.2:5350667-5350686 MS.gene30953:intron 30.0%
! TTTTGTGCGATTTGAAAATG+TGG - chr2.2:5351631-5351650 MS.gene30953:intron 30.0%
!! GAATTGTTGGCTTCTAAATA+TGG - chr2.2:5350276-5350295 MS.gene30953:intron 30.0%
!! TATGGTTTAGGTTGTACAAA+GGG - chr2.2:5351289-5351308 MS.gene30953:intron 30.0%
!! TTATGGTTTAGGTTGTACAA+AGG - chr2.2:5351288-5351307 MS.gene30953:intron 30.0%
!!! AATGTTTTAACGTGTTTTGG+AGG - chr2.2:5350380-5350399 MS.gene30953:intron 30.0%
!!! CTGTTTTTAGAGCAAAAGAA+TGG - chr2.2:5351353-5351372 MS.gene30953:intron 30.0%
!!! GGAAATGTTTTAACGTGTTT+TGG - chr2.2:5350377-5350396 MS.gene30953:intron 30.0%
!!! GGTTTTATTGGTTATGGTTT+AGG - chr2.2:5351277-5351296 MS.gene30953:intron 30.0%
!!! TTGCGCACAGATTTTAAAAT+CGG - chr2.2:5350356-5350375 MS.gene30953:intron 30.0%
AAAAGGTTCATGATGAACTC+AGG + chr2.2:5351731-5351750 None:intergenic 35.0%
AAACGCAGTCAATCATGATT+AGG - chr2.2:5350822-5350841 MS.gene30953:CDS 35.0%
AAGTAAAAACCTTGATGCGT+TGG + chr2.2:5350305-5350324 None:intergenic 35.0%
AATTGGTAGAGCTGTCAAAA+CGG - chr2.2:5350547-5350566 MS.gene30953:intron 35.0%
AGTAAAAACCTTGATGCGTT+GGG + chr2.2:5350304-5350323 None:intergenic 35.0%
AGTTCTTCCAAATATTCAGG+TGG + chr2.2:5351494-5351513 None:intergenic 35.0%
ATCGTACCTTTGGTTAGAAA+TGG - chr2.2:5350153-5350172 MS.gene30953:intron 35.0%
CACAACCATGTTATTCATCA+TGG - chr2.2:5350010-5350029 MS.gene30953:intron 35.0%
GAGAGTTCTTCCAAATATTC+AGG + chr2.2:5351497-5351516 None:intergenic 35.0%
GCTATTAATGCTACTCTGTA+TGG - chr2.2:5350249-5350268 MS.gene30953:intron 35.0%
GCTCAATAGTTTGACTCATT+TGG - chr2.2:5351789-5351808 MS.gene30953:intron 35.0%
GCTTAGGACAGAACAAAATT+AGG - chr2.2:5351600-5351619 MS.gene30953:intron 35.0%
GGTTGATTACGTTCAATAGA+CGG + chr2.2:5351093-5351112 None:intergenic 35.0%
GTATGCATGCAATGTAGATT+GGG - chr2.2:5351225-5351244 MS.gene30953:intron 35.0%
GTCAGTGCAATTTAAATACG+TGG + chr2.2:5351114-5351133 None:intergenic 35.0%
GTTAATTACAATCAGGTCGA+TGG - chr2.2:5351033-5351052 MS.gene30953:intron 35.0%
GTTCTTCCAAATATTCAGGT+GGG + chr2.2:5351493-5351512 None:intergenic 35.0%
GTTGAAATTGTGAGTGCTTT+GGG - chr2.2:5351314-5351333 MS.gene30953:intron 35.0%
TACAAGTAACATCGTACCTT+TGG - chr2.2:5350143-5350162 MS.gene30953:intron 35.0%
TCATGATTGACTGCGTTTAA+TGG + chr2.2:5350820-5350839 None:intergenic 35.0%
TGACCTAACTTCACAAAAGT+TGG + chr2.2:5351443-5351462 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr2.2:5351924-5351943 MS.gene30953:intron 35.0%
TGGTCCCAAATTTGTGAATA+TGG + chr2.2:5351423-5351442 None:intergenic 35.0%
TGTATGCATGCAATGTAGAT+TGG - chr2.2:5351224-5351243 MS.gene30953:intron 35.0%
TGTTGAAATTGTGAGTGCTT+TGG - chr2.2:5351313-5351332 MS.gene30953:intron 35.0%
! AAAGGTACGATGTTACTTGT+AGG + chr2.2:5350144-5350163 None:intergenic 35.0%
! AACACAGTTTGGTTGGTTAA+CGG - chr2.2:5350944-5350963 MS.gene30953:intron 35.0%
! ACTTTTGTGAAGTTAGGTCA+AGG - chr2.2:5351443-5351462 MS.gene30953:intron 35.0%
! ATTCAACTCATTTTCAACCC+TGG + chr2.2:5351657-5351676 None:intergenic 35.0%
! CAATGTAGATTGGGTTTTTG+AGG - chr2.2:5351234-5351253 MS.gene30953:intron 35.0%
! GATAAGAATAAAAAGGCACG+TGG - chr2.2:5351383-5351402 MS.gene30953:intron 35.0%
! GGGTTGAAAATGAGTTGAAT+TGG - chr2.2:5351657-5351676 MS.gene30953:intron 35.0%
! TCAATGGAAGTGTAAGAACA+CGG + chr2.2:5350185-5350204 None:intergenic 35.0%
! TTGGTTGGTTAACGGATAAT+CGG - chr2.2:5350952-5350971 MS.gene30953:intron 35.0%
!! ACATGTTCTATGTGTTGCTT+AGG - chr2.2:5351584-5351603 MS.gene30953:intron 35.0%
!!! AATTTTGAGACGTTTGAGGT+AGG + chr2.2:5350094-5350113 None:intergenic 35.0%
!!! CAAGAATTTTGAGACGTTTG+AGG + chr2.2:5350098-5350117 None:intergenic 35.0%
!!! GACCCTGATTTTGGTTTTAT+TGG - chr2.2:5351265-5351284 MS.gene30953:intron 35.0%
!!! GGTTGACAGTGAACTTTTTT+TGG + chr2.2:5351970-5351989 None:intergenic 35.0%
!!! GTGTTTTGGAGGTTTTTATG+CGG - chr2.2:5350391-5350410 MS.gene30953:intron 35.0%
!!! TGACAGTGAACTTTTTTTGG+TGG + chr2.2:5351967-5351986 None:intergenic 35.0%
ACACAAAGAAGCTAGTTACC+TGG + chr2.2:5352151-5352170 None:intergenic 40.0%
AGCTCTTGAACAATTCGGTT+CGG - chr2.2:5351767-5351786 MS.gene30953:intron 40.0%
ATATCATCAGCACGGTTCAA+TGG + chr2.2:5350201-5350220 None:intergenic 40.0%
ATTGGTAGAGCTGTCAAAAC+GGG - chr2.2:5350548-5350567 MS.gene30953:intron 40.0%
CAGCTTGAATATCATCAGCA+CGG + chr2.2:5350209-5350228 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr2.2:5351926-5351945 MS.gene30953:intron 40.0%
CATTTGCCCACCTGAATATT+TGG - chr2.2:5351484-5351503 MS.gene30953:intron 40.0%
CGAGTCCATGATGAATAACA+TGG + chr2.2:5350018-5350037 None:intergenic 40.0%
CGTTGGATAGGAATTGAACT+GGG + chr2.2:5350051-5350070 None:intergenic 40.0%
CTAGCTTCTTTGTGTATGCT+TGG - chr2.2:5352156-5352175 MS.gene30953:CDS 40.0%
CTGTAAAACTGCCCTATGTA+GGG + chr2.2:5351991-5352010 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr2.2:5351925-5351944 MS.gene30953:intron 40.0%
TACTCAGTTGCACCGAATAT+AGG + chr2.2:5352071-5352090 None:intergenic 40.0%
TCGTTGGATAGGAATTGAAC+TGG + chr2.2:5350052-5350071 None:intergenic 40.0%
TCTCAAAATTCTTGCTGCTG+TGG - chr2.2:5350104-5350123 MS.gene30953:intron 40.0%
TCTGTATGGTCCTGAATTGT+TGG - chr2.2:5350263-5350282 MS.gene30953:intron 40.0%
TGCTGATGATATTCAAGCTG+AGG - chr2.2:5350209-5350228 MS.gene30953:intron 40.0%
TGTTATTCATCATGGACTCG+TGG - chr2.2:5350018-5350037 MS.gene30953:intron 40.0%
TTCACTGTCAACCCTACATA+GGG - chr2.2:5351977-5351996 MS.gene30953:CDS 40.0%
! GGACCAACTTTTGTGAAGTT+AGG - chr2.2:5351437-5351456 MS.gene30953:intron 40.0%
! TGAGTGCTTTGGGTTCATTT+GGG - chr2.2:5351324-5351343 MS.gene30953:intron 40.0%
!! ATTTTGACAGCTCTACTGGT+TGG - chr2.2:5350583-5350602 MS.gene30953:intron 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG - chr2.2:5352125-5352144 MS.gene30953:CDS 40.0%
!!! CAGTGAACTTTTTTTGGTGG+TGG + chr2.2:5351964-5351983 None:intergenic 40.0%
!!! GATTGATTCGACCCTGATTT+TGG - chr2.2:5351256-5351275 MS.gene30953:intron 40.0%
!!! GTCTATTTTGACAGCTCTAC+TGG - chr2.2:5350579-5350598 MS.gene30953:intron 40.0%
ACACCACAGTCATTGACATC+TGG - chr2.2:5352090-5352109 MS.gene30953:CDS 45.0%
AGAGCTCCTGAGCCTATATT+CGG - chr2.2:5352056-5352075 MS.gene30953:CDS 45.0%
CAAAATTCTTGCTGCTGTGG+TGG - chr2.2:5350107-5350126 MS.gene30953:intron 45.0%
CCTGTAAAACTGCCCTATGT+AGG + chr2.2:5351992-5352011 None:intergenic 45.0%
CTGTGCGCAAGAAACTCATA+AGG + chr2.2:5350346-5350365 None:intergenic 45.0%
GCGATTTGAAAATGTGGCCA+GGG - chr2.2:5351637-5351656 MS.gene30953:intron 45.0%
GCGTGAGAAATCAATAGGGT+AGG - chr2.2:5350445-5350464 MS.gene30953:intron 45.0%
GTTCACTGTCAACCCTACAT+AGG - chr2.2:5351976-5351995 MS.gene30953:CDS 45.0%
TATTCAGGTGGGCAAATGTC+AGG + chr2.2:5351482-5351501 None:intergenic 45.0%
TCCACTATCACAGGAAACAG+TGG + chr2.2:5352242-5352261 None:intergenic 45.0%
TGACCAGATGTCAATGACTG+TGG + chr2.2:5352096-5352115 None:intergenic 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG - chr2.2:5351897-5351916 MS.gene30953:intron 45.0%
TGCGATTTGAAAATGTGGCC+AGG - chr2.2:5351636-5351655 MS.gene30953:intron 45.0%
! CCTACATAGGGCAGTTTTAC+AGG - chr2.2:5351989-5352008 MS.gene30953:CDS 45.0%
! GTGAGTGCTTTGGGTTCATT+TGG - chr2.2:5351323-5351342 MS.gene30953:intron 45.0%
!!! AACTTTTTTTGGTGGTGGCC+GGG + chr2.2:5351959-5351978 None:intergenic 45.0%
!!! GAACTTTTTTTGGTGGTGGC+CGG + chr2.2:5351960-5351979 None:intergenic 45.0%
AGGGCGCGTGAGAAATCAAT+AGG - chr2.2:5350440-5350459 MS.gene30953:intron 50.0%
ATATGGGTCCCAACGCATCA+AGG - chr2.2:5350293-5350312 MS.gene30953:intron 50.0%
ATCCAACGACGTCGTTTCAG+AGG - chr2.2:5350063-5350082 MS.gene30953:intron 50.0%
CTGAAACGACGTCGTTGGAT+AGG + chr2.2:5350063-5350082 None:intergenic 50.0%
GCCACTGTTTCCTGTGATAG+TGG - chr2.2:5352238-5352257 MS.gene30953:CDS 50.0%
GGAAGAACTCTCTGAGCTTC+AGG - chr2.2:5351505-5351524 MS.gene30953:intron 50.0%
GGGCGCGTGAGAAATCAATA+GGG - chr2.2:5350441-5350460 MS.gene30953:intron 50.0%
GTCATTGACATCTGGTCAGC+TGG - chr2.2:5352098-5352117 MS.gene30953:CDS 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - chr2.2:5351896-5351915 MS.gene30953:intron 50.0%
GTTGCACCGAATATAGGCTC+AGG + chr2.2:5352065-5352084 None:intergenic 50.0%
TAGGTCAAGGATCGTCCACT+AGG - chr2.2:5351456-5351475 MS.gene30953:intron 50.0%
! TGGTGAACTTTTGCTTGGCC+AGG - chr2.2:5352130-5352149 MS.gene30953:CDS 50.0%
!! GCTGTCAAAACGGGCTAAAG+TGG - chr2.2:5350557-5350576 MS.gene30953:intron 50.0%
CCAACTGAGCTAAGCTCACG+AGG + chr2.2:5351895-5351914 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr2.2:5351892-5351911 MS.gene30953:intron 55.0%
TGGGCAAATGTCAGGCCTAG+TGG + chr2.2:5351474-5351493 None:intergenic 55.0%
TGGTCAGCTGGTTGCGTACT+TGG - chr2.2:5352110-5352129 MS.gene30953:CDS 55.0%
!! TGCCTCTGAAACGACGTCGT+TGG + chr2.2:5350068-5350087 None:intergenic 55.0%
AAGGTCCGGGGTTCGATTCC+CGG - chr2.2:5351938-5351957 MS.gene30953:intron 60.0%
GGTGGCCGGGAATCGAACCC+CGG + chr2.2:5351946-5351965 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 5349991 5352265 5349991 ID=MS.gene30953
chr2.2 mRNA 5349991 5352265 5349991 ID=MS.gene30953.t1;Parent=MS.gene30953
chr2.2 exon 5351942 5352265 5351942 ID=MS.gene30953.t1.exon1;Parent=MS.gene30953.t1
chr2.2 CDS 5351942 5352265 5351942 ID=cds.MS.gene30953.t1;Parent=MS.gene30953.t1
chr2.2 exon 5350730 5350957 5350730 ID=MS.gene30953.t1.exon2;Parent=MS.gene30953.t1
chr2.2 CDS 5350730 5350957 5350730 ID=cds.MS.gene30953.t1;Parent=MS.gene30953.t1
chr2.2 exon 5349991 5350017 5349991 ID=MS.gene30953.t1.exon3;Parent=MS.gene30953.t1
chr2.2 CDS 5349991 5350017 5349991 ID=cds.MS.gene30953.t1;Parent=MS.gene30953.t1
Gene Sequence

>MS.gene30953

ATGACTACAGTTGCAACAACACAACCATGTTATTCATCATGGACTCGTGGTTCAATTCCCAGTTCAATTCCTATCCAACGACGTCGTTTCAGAGGCAAAACCTACCTCAAACGTCTCAAAATTCTTGCTGCTGTGGTGGAAGAAACAACACCTACAAGTAACATCGTACCTTTGGTTAGAAATGGAACAAACCGTGTTCTTACACTTCCATTGAACCGTGCTGATGATATTCAAGCTGAGGCTAGAGCTATGACACGTGCTATTAATGCTACTCTGTATGGTCCTGAATTGTTGGCTTCTAAATATGGGTCCCAACGCATCAAGGTTTTTACTTTGACCATTACTTTTTTCGCCTTATGAGTTTCTTGCGCACAGATTTTAAAATCGGAAATGTTTTAACGTGTTTTGGAGGTTTTTATGCGGTTTGAGTTATATAATACAAACAAAATAGGGCGCGTGAGAAATCAATAGGGTAGGAAAAGAAAGAGTCTTTTACTTTTACTGTTTTTTGAATACCCTTTTTGAAAGTTCTTTCTTGAGTAGTACTTGATTCACTAATTGGTAGAGCTGTCAAAACGGGCTAAAGTGGTCTATTTTGACAGCTCTACTGGTTGGATATTTTATGATAAATATTATGCAAAATTATGTTTTAAAGTAAAAATGCTATGATTATTATGTACTTTATTTGGTACTTGTAGGCACTTTTTGAATAGTACTAGTTCATACATGTGGTTTGACTAAGAAATGAATTATTTTGATACACAATTTTAACAAGAAGTTTAAATTTGTTAATGTATATAACAAAGTGTTCTTTTTTATTAATCATCCATTAAACGCAGTCAATCATGATTAGGAACCTTATTGACTACAATTTTTTATGTGTATGTTTGAACACAATTCATAGTTTAATGTATATCATATGTATTTGAACACCGAAAAGTTATGTATATTTGAACACAGTTTGGTTGGTTAACGGATAATCGGATATCATGCACATATGTTTAAACACCTAAATATCGTAACTAATGACATTCATGATGTGGTTAATTACAATCAGGTCGATGGTTGATGAATTGTGACATCCTGTTATATTCATTAACCGTCTATTGAACGTAATCAACCACGTATTTAAATTGCACTGACCGTCCAAATATTGTTGTTGAAATTTGTTGTCAAATTTGTACCTTAACTCAAACTTGAATTCATACTGTTATCAGTATTCAGCATAATACTTGTATGCATGCAATGTAGATTGGGTTTTTGAGGATTGATTCGACCCTGATTTTGGTTTTATTGGTTATGGTTTAGGTTGTACAAAGGGCTGTTGAAATTGTGAGTGCTTTGGGTTCATTTGGGTTGAAACTGTTTTTAGAGCAAAAGAATGGGACACTTGATAAGAATAAAAAGGCACGTGGTACTGAATTGAAGACCATATTCACAAATTTGGGACCAACTTTTGTGAAGTTAGGTCAAGGATCGTCCACTAGGCCTGACATTTGCCCACCTGAATATTTGGAAGAACTCTCTGAGCTTCAGGTGTTGTGTTCTCTACCCTTTCCCTCATTTATATAGTTGCATTTTTCTGTTCAATTTACATGTTCTATGTGTTGCTTAGGACAGAACAAAATTAGGTGTTCTGATTTTGTGCGATTTGAAAATGTGGCCAGGGTTGAAAATGAGTTGAATTGGTTTAGTTTGAAGCGACTCGATATAAATTGATTTTAGCTTAAAATTCGACCTGAGTTCATCATGAACCTTTTTATGAGCTTGAATTCAAGCTCTTGAACAATTCGGTTCGGCTCAATAGTTTGACTCATTTGGTTCATGAAACATATTTAACAAGTTAATTAGCAAAATTCATGAACTACTTTCGAGTTTGTTCAGTTCACTGTCAACTTTGTCCTCGTGAGCTTAGCTCAGTTGGTTGGGACAATGCATAAAATATGCAAGGTCCGGGGTTCGATTCCCGGCCACCACCAAAAAAAGTTCACTGTCAACCCTACATAGGGCAGTTTTACAGGTTAAATGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCCTATATTCGGTGCAACTGAGTACACCACAGTCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGGTAACTAGCTTCTTTGTGTATGCTTGGTCAAGTTACATTTAGAATTCATGTATGTCAAAACTAATGATGAATTTCTGTTCTTATCAGCCACTGTTTCCTGTGATAGTGGAGTAG
Protein sequence

>MS.gene30953.t1

MTTVATTQPCYSSWTRGSIPSSIPIQRRRFRGKTYLKRLKILAAVVEETTPTSNIVPLVRNGTNRVLTLPLNRADDIQAEARAMTRAINATLYGPELLASKYGSQRIKVVQRAVEIVSALGSFGLKLFLEQKNGTLDKNKKARGTELKTIFTNLGPTFVKLGQGSSTRPDICPPEYLEELSELQPLFPVIVE