Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30980.t1 | XP_003602583.1 | 98.1 | 637 | 12 | 0 | 57 | 693 | 1 | 637 | 0.00E+00 | 1307.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30980.t1 | Q9LSB1 | 67.7 | 637 | 185 | 6 | 74 | 693 | 22 | 654 | 3.8e-261 | 902.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30980.t1 | G7JBH4 | 98.1 | 637 | 12 | 0 | 57 | 693 | 1 | 637 | 0.0e+00 | 1307.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049302 | MS.gene30980 | 0.981126 | 7.77E-152 | -1.69E-46 |
| MS.gene05017 | MS.gene30980 | 0.808466 | 3.06E-50 | -1.69E-46 |
| MS.gene050649 | MS.gene30980 | 0.807015 | 6.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31842 | MS.gene30980 | PPI |
| MS.gene30980 | MS.gene32326 | PPI |
| MS.gene026687 | MS.gene30980 | PPI |
| MS.gene30980 | MS.gene054153 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30980.t1 | MTR_3g095910 | 98.116 | 637 | 12 | 0 | 57 | 693 | 1 | 637 | 0.0 | 1308 |
| MS.gene30980.t1 | MTR_1g029130 | 66.773 | 626 | 196 | 5 | 79 | 693 | 3 | 627 | 0.0 | 877 |
| MS.gene30980.t1 | MTR_1g019540 | 48.247 | 485 | 228 | 9 | 184 | 649 | 55 | 535 | 7.19e-163 | 479 |
| MS.gene30980.t1 | MTR_1g019540 | 48.247 | 485 | 228 | 9 | 184 | 649 | 108 | 588 | 1.84e-162 | 481 |
| MS.gene30980.t1 | MTR_1g019530 | 45.582 | 498 | 253 | 9 | 166 | 649 | 91 | 584 | 9.61e-149 | 445 |
| MS.gene30980.t1 | MTR_1g082880 | 44.726 | 474 | 221 | 8 | 207 | 652 | 91 | 551 | 5.31e-138 | 416 |
| MS.gene30980.t1 | MTR_7g113610 | 40.381 | 525 | 273 | 10 | 160 | 655 | 48 | 561 | 2.63e-136 | 412 |
| MS.gene30980.t1 | MTR_1g080460 | 35.802 | 162 | 103 | 1 | 362 | 523 | 27 | 187 | 9.83e-28 | 118 |
| MS.gene30980.t1 | MTR_7g115460 | 35.119 | 168 | 108 | 1 | 356 | 523 | 30 | 196 | 1.84e-27 | 117 |
| MS.gene30980.t1 | MTR_8g028085 | 98.000 | 50 | 1 | 0 | 1 | 50 | 1 | 50 | 3.64e-26 | 102 |
| MS.gene30980.t1 | MTR_7g109920 | 28.079 | 203 | 107 | 3 | 359 | 522 | 23 | 225 | 1.36e-17 | 84.0 |
| MS.gene30980.t1 | MTR_7g109920 | 28.079 | 203 | 107 | 3 | 359 | 522 | 23 | 225 | 4.39e-17 | 83.6 |
| MS.gene30980.t1 | MTR_1g084670 | 27.941 | 204 | 108 | 4 | 358 | 522 | 19 | 222 | 4.86e-16 | 79.3 |
| MS.gene30980.t1 | MTR_1g084670 | 27.799 | 259 | 131 | 9 | 358 | 572 | 19 | 265 | 5.95e-16 | 80.1 |
| MS.gene30980.t1 | MTR_1g084670 | 35.043 | 117 | 73 | 1 | 358 | 471 | 19 | 135 | 8.62e-16 | 77.8 |
| MS.gene30980.t1 | MTR_4g132185 | 26.961 | 204 | 110 | 3 | 358 | 522 | 20 | 223 | 1.21e-15 | 79.0 |
| MS.gene30980.t1 | MTR_5g012590 | 28.000 | 175 | 111 | 5 | 360 | 522 | 39 | 210 | 2.47e-14 | 76.6 |
| MS.gene30980.t1 | MTR_4g100950 | 26.163 | 172 | 118 | 4 | 360 | 522 | 37 | 208 | 1.51e-12 | 70.9 |
| MS.gene30980.t1 | MTR_7g111850 | 24.514 | 257 | 134 | 8 | 362 | 572 | 26 | 268 | 1.54e-12 | 69.7 |
| MS.gene30980.t1 | MTR_1g084660 | 26.562 | 256 | 125 | 9 | 358 | 572 | 19 | 252 | 1.36e-11 | 66.6 |
| MS.gene30980.t1 | MTR_1g084660 | 26.368 | 201 | 102 | 4 | 358 | 522 | 19 | 209 | 1.50e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30980.t1 | AT3G18660 | 67.290 | 642 | 189 | 6 | 69 | 693 | 17 | 654 | 0.0 | 887 |
| MS.gene30980.t1 | AT3G18660 | 66.822 | 642 | 188 | 6 | 69 | 693 | 17 | 650 | 0.0 | 879 |
| MS.gene30980.t1 | AT3G18660 | 66.667 | 642 | 188 | 6 | 69 | 693 | 17 | 649 | 0.0 | 876 |
| MS.gene30980.t1 | AT1G77130 | 63.065 | 620 | 192 | 9 | 61 | 669 | 1 | 594 | 0.0 | 789 |
| MS.gene30980.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 184 | 652 | 43 | 523 | 4.05e-170 | 498 |
| MS.gene30980.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 184 | 652 | 111 | 591 | 2.88e-169 | 498 |
| MS.gene30980.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 184 | 652 | 122 | 602 | 3.46e-169 | 498 |
| MS.gene30980.t1 | AT4G33330 | 50.716 | 489 | 219 | 9 | 184 | 655 | 111 | 594 | 7.60e-169 | 498 |
| MS.gene30980.t1 | AT1G08990 | 44.490 | 490 | 243 | 8 | 184 | 651 | 79 | 561 | 1.49e-141 | 426 |
| MS.gene30980.t1 | AT1G54940 | 44.422 | 493 | 231 | 10 | 184 | 649 | 74 | 550 | 2.33e-136 | 412 |
| MS.gene30980.t1 | AT4G33330 | 50.000 | 350 | 154 | 8 | 184 | 516 | 122 | 467 | 6.74e-107 | 333 |
| MS.gene30980.t1 | AT5G18480 | 36.095 | 169 | 107 | 1 | 354 | 522 | 24 | 191 | 1.62e-29 | 124 |
| MS.gene30980.t1 | AT1G60470 | 27.413 | 259 | 131 | 7 | 359 | 572 | 21 | 267 | 8.46e-18 | 85.9 |
| MS.gene30980.t1 | AT1G60450 | 27.184 | 206 | 109 | 3 | 358 | 522 | 16 | 221 | 2.04e-16 | 81.6 |
| MS.gene30980.t1 | AT1G56600 | 26.357 | 258 | 133 | 7 | 360 | 572 | 21 | 266 | 4.54e-16 | 80.5 |
| MS.gene30980.t1 | AT4G26250 | 25.806 | 217 | 120 | 4 | 360 | 535 | 24 | 240 | 1.53e-15 | 79.0 |
| MS.gene30980.t1 | AT1G09350 | 26.108 | 203 | 110 | 3 | 360 | 522 | 15 | 217 | 1.55e-15 | 79.0 |
| MS.gene30980.t1 | AT5G30500 | 25.123 | 203 | 112 | 3 | 357 | 519 | 21 | 223 | 2.40e-14 | 73.9 |
| MS.gene30980.t1 | AT5G30500 | 32.203 | 118 | 77 | 1 | 357 | 471 | 21 | 138 | 2.07e-13 | 72.4 |
| MS.gene30980.t1 | AT2G47180 | 34.211 | 114 | 72 | 1 | 362 | 472 | 31 | 144 | 2.70e-13 | 72.4 |
| MS.gene30980.t1 | AT3G07568 | 40.000 | 70 | 40 | 1 | 1 | 70 | 1 | 68 | 7.76e-12 | 61.6 |
| MS.gene30980.t1 | AT4G16600 | 25.989 | 177 | 114 | 6 | 360 | 523 | 58 | 230 | 2.08e-11 | 67.4 |
| MS.gene30980.t1 | AT2G35710 | 23.810 | 210 | 145 | 5 | 326 | 523 | 28 | 234 | 2.78e-11 | 65.9 |
| MS.gene30980.t1 | AT2G35710 | 26.136 | 176 | 115 | 5 | 360 | 523 | 62 | 234 | 8.84e-11 | 65.5 |
Find 144 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATGTGCTTCACTATTT+AGG | 0.175807 | 3.3:+79434431 | MS.gene30980:CDS |
| GGTAATGAAGAGCACATAAA+TGG | 0.238422 | 3.3:-79433496 | None:intergenic |
| TGAAGCCATGGTTATGCTTC+AGG | 0.255686 | 3.3:+79434456 | MS.gene30980:CDS |
| TCTTCCTCATCAATCCATTC+TGG | 0.258883 | 3.3:-79433294 | None:intergenic |
| ATTTCGTTTGGAAGCATCTC+TGG | 0.265937 | 3.3:+79430247 | MS.gene30980:CDS |
| CTTCAAACTCGAATCGTGTT+TGG | 0.278884 | 3.3:+79430318 | MS.gene30980:CDS |
| TTGCACTAGAGCCTGTTAAA+TGG | 0.289954 | 3.3:-79432835 | None:intergenic |
| TACAATACCACCCATTTAAC+AGG | 0.292959 | 3.3:+79432824 | MS.gene30980:CDS |
| TCAGCTCATGTTTATGTTTG+TGG | 0.297365 | 3.3:+79433855 | MS.gene30980:CDS |
| TTACCGGTAGCAGTGATTTC+CGG | 0.297466 | 3.3:-79434161 | None:intergenic |
| TGCATCTTAAGTTTCTATCT+TGG | 0.305792 | 3.3:-79432724 | None:intergenic |
| CACCTGCAGCTTGCAGCTGC+TGG | 0.307481 | 3.3:+79433444 | MS.gene30980:CDS |
| CCTTCTGCTTTGACTTCAAC+AGG | 0.309519 | 3.3:-79434592 | None:intergenic |
| AATGGAATTACAGCAAATTC+AGG | 0.311462 | 3.3:+79434051 | MS.gene30980:CDS |
| TCTCTCAAAACACTCAAGTT+TGG | 0.319713 | 3.3:-79433594 | None:intergenic |
| ACGTCCAACTAGTTCTTTGC+AGG | 0.331846 | 3.3:-79433547 | None:intergenic |
| GAAAAGCATGTTGCGGCATT+GGG | 0.356116 | 3.3:+79434730 | MS.gene30980:CDS |
| TCTTTGCAGGTAAACAGATT+TGG | 0.366099 | 3.3:-79433534 | None:intergenic |
| CATTACAAAAGTGGCGGAAA+TGG | 0.368832 | 3.3:-79432780 | None:intergenic |
| CAGGTAAACAGATTTGGTAT+TGG | 0.380674 | 3.3:-79433528 | None:intergenic |
| AGAGATGCTTCCAAACGAAA+TGG | 0.389718 | 3.3:-79430245 | None:intergenic |
| CTGTTGTTTCCCATTTCGTT+TGG | 0.389744 | 3.3:+79430235 | MS.gene30980:CDS |
| ATCAAATGTAGATACTGATT+GGG | 0.390328 | 3.3:+79433095 | MS.gene30980:CDS |
| TATCAAATGTAGATACTGAT+TGG | 0.406559 | 3.3:+79433094 | MS.gene30980:CDS |
| TCAGGGACTATGATTGTAAC+TGG | 0.408838 | 3.3:+79434474 | MS.gene30980:CDS |
| GGAAAAGCATGTTGCGGCAT+TGG | 0.412425 | 3.3:+79434729 | MS.gene30980:CDS |
| TATGCTTTGTGCTGCAGCTA+TGG | 0.414347 | 3.3:-79433880 | None:intergenic |
| CTTGTAAGAATGGAGCTAAC+TGG | 0.418026 | 3.3:+79433400 | MS.gene30980:CDS |
| GGCATTGGGGAGAGAGTAAC+TGG | 0.422215 | 3.3:+79434744 | MS.gene30980:CDS |
| ATTGTTGCATAGGCTTCTCT+TGG | 0.422994 | 3.3:-79433825 | None:intergenic |
| GCAAAACTGTTGTAAAAGCT+TGG | 0.428800 | 3.3:-79434570 | None:intergenic |
| CCCTTGGTCCCCTCCATTGT+AGG | 0.431386 | 3.3:-79434276 | None:intergenic |
| TGGCGGAAATGGTTATCAAT+AGG | 0.431528 | 3.3:-79432769 | None:intergenic |
| TGGATATCACAGAAGCGGTT+TGG | 0.440256 | 3.3:+79433956 | MS.gene30980:CDS |
| CGATTGCTATGGTTCAGCTT+AGG | 0.442953 | 3.3:+79430195 | MS.gene30980:CDS |
| TGCACTAGAGCCTGTTAAAT+GGG | 0.445408 | 3.3:-79432834 | None:intergenic |
| TGGGTGGTATTGTAAATCTC+TGG | 0.456085 | 3.3:-79432815 | None:intergenic |
| CTTGGTAGAGAAGGGCAAAC+AGG | 0.457373 | 3.3:-79433330 | None:intergenic |
| ACTATTTAGGTTTGAAGCCA+TGG | 0.459094 | 3.3:+79434444 | MS.gene30980:CDS |
| GTAATGAAGAGCACATAAAT+GGG | 0.464788 | 3.3:-79433495 | None:intergenic |
| ACAACACTGAGATATCTAAC+TGG | 0.465253 | 3.3:+79433190 | MS.gene30980:CDS |
| TTCAAGAAGTTCATATGTCT+TGG | 0.466879 | 3.3:-79434335 | None:intergenic |
| CAAATGAAAACCATGTTGTT+TGG | 0.468309 | 3.3:+79434392 | MS.gene30980:CDS |
| GTCAAAGCAGAAGGCACAGT+TGG | 0.468496 | 3.3:+79434601 | MS.gene30980:CDS |
| GGCCAGCAGCTGCAAGCTGC+AGG | 0.469350 | 3.3:-79433446 | None:intergenic |
| CTACCAAGTCTCGGATCTCC+TGG | 0.470581 | 3.3:+79433345 | MS.gene30980:CDS |
| AGCTGAAATGTGCAGTTTGA+TGG | 0.471355 | 3.3:-79434224 | None:intergenic |
| CAAAACTGTTGTAAAAGCTT+GGG | 0.471650 | 3.3:-79434569 | None:intergenic |
| TAGTGAAGCACATAGAGAAT+TGG | 0.472510 | 3.3:-79434425 | None:intergenic |
| CAGTTAGCTCCATTCTTACA+AGG | 0.473497 | 3.3:-79433399 | None:intergenic |
| GTTAAGCTACCTTGTAAGAA+TGG | 0.484639 | 3.3:+79433390 | MS.gene30980:CDS |
| TGCCCTTCTCTACCAAGTCT+CGG | 0.486023 | 3.3:+79433336 | MS.gene30980:CDS |
| CTGAATATGAGAGGAACAAT+GGG | 0.489156 | 3.3:+79431192 | MS.gene30980:CDS |
| GAAGCCATGGTTATGCTTCA+GGG | 0.489159 | 3.3:+79434457 | MS.gene30980:CDS |
| GCACAAAGCATAAGAATGTC+AGG | 0.490485 | 3.3:+79433891 | MS.gene30980:CDS |
| GATCCGAGACTTGGTAGAGA+AGG | 0.490655 | 3.3:-79433339 | None:intergenic |
| TTTACCTGCAAAGAACTAGT+TGG | 0.491571 | 3.3:+79433543 | MS.gene30980:CDS |
| GCAAGTTCACATGATCCAAC+TGG | 0.492733 | 3.3:-79433630 | None:intergenic |
| TCTCATTTATATGATCCATC+AGG | 0.500815 | 3.3:-79434247 | None:intergenic |
| TTTCGTTTGGAAGCATCTCT+GGG | 0.507388 | 3.3:+79430248 | MS.gene30980:CDS |
| GAGATGCTTCCAAACGAAAT+GGG | 0.507494 | 3.3:-79430244 | None:intergenic |
| ATGGTAACTGTGGGAGGTGT+TGG | 0.516236 | 3.3:-79434788 | None:intergenic |
| ATATTTCATTCAAATACCCT+TGG | 0.517914 | 3.3:-79434292 | None:intergenic |
| TTCCTTTGAATGAGGTAGCA+AGG | 0.523339 | 3.3:-79433467 | None:intergenic |
| TGTAGTTTGCTATTTCCGCT+TGG | 0.524042 | 3.3:-79434637 | None:intergenic |
| AAATATTTACATGGTGGCAC+AGG | 0.525162 | 3.3:+79434309 | MS.gene30980:CDS |
| TAAGGAACTGACATGGATGA+AGG | 0.528957 | 3.3:-79431252 | None:intergenic |
| CTGCACATTTCAGCTCCTGA+TGG | 0.529440 | 3.3:+79434232 | MS.gene30980:CDS |
| ATTACAGCAAATTCAGGTTG+TGG | 0.530607 | 3.3:+79434057 | MS.gene30980:CDS |
| AACATACCTCTGCCTCTCAT+AGG | 0.531287 | 3.3:-79433657 | None:intergenic |
| GGGAGTCTCTATATCCAGAA+TGG | 0.532222 | 3.3:+79433280 | MS.gene30980:CDS |
| GTATAGATAATCTTTGTGAC+TGG | 0.535311 | 3.3:+79434708 | MS.gene30980:CDS |
| GCACTGGCGAATCAAAGTTA+AGG | 0.535732 | 3.3:+79434667 | MS.gene30980:CDS |
| GGGGTAATTTCCTTTGAATG+AGG | 0.536279 | 3.3:-79433475 | None:intergenic |
| GGAAACAACAGCAGCTGAAG+TGG | 0.537618 | 3.3:-79430223 | None:intergenic |
| TCCTACAATGGAGGGGACCA+AGG | 0.538011 | 3.3:+79434275 | MS.gene30980:CDS |
| ATGCAGATTTACTCATACTC+AGG | 0.538087 | 3.3:+79434114 | MS.gene30980:CDS |
| ATTTGAATGAAATATTTACA+TGG | 0.539540 | 3.3:+79434300 | MS.gene30980:CDS |
| GAAATAGCAAACTACACAGA+TGG | 0.541544 | 3.3:+79434644 | MS.gene30980:CDS |
| ATTTGGTATTGGAAAACAGT+TGG | 0.541578 | 3.3:-79433517 | None:intergenic |
| ATGCCGGAAATCACTGCTAC+CGG | 0.545589 | 3.3:+79434158 | MS.gene30980:CDS |
| TGAAGCACATAGAGAATTGG+TGG | 0.546520 | 3.3:-79434422 | None:intergenic |
| TTGGACGTGAAGGAAATGTA+TGG | 0.546585 | 3.3:+79433562 | MS.gene30980:CDS |
| AGAAGCGGTTTGGAAGCAGC+AGG | 0.547255 | 3.3:+79433966 | MS.gene30980:CDS |
| AGCAGAAGGCACAGTTGGAG+TGG | 0.548612 | 3.3:+79434606 | MS.gene30980:CDS |
| TTTGGAAGCAGCAGGGTGGA+AGG | 0.549025 | 3.3:+79433974 | MS.gene30980:CDS |
| TGAAGATTTATACAAGAGAA+AGG | 0.550106 | 3.3:+79432652 | MS.gene30980:CDS |
| TATGGGGTGGCTCAGATCCT+CGG | 0.552847 | 3.3:+79433067 | MS.gene30980:CDS |
| TCTCATCAACAAGTATTACT+AGG | 0.558372 | 3.3:-79433926 | None:intergenic |
| GTACCAGGAGATCCGAGACT+TGG | 0.558725 | 3.3:-79433348 | None:intergenic |
| TGATTCGAACTCGATTGCTA+TGG | 0.560773 | 3.3:+79430184 | MS.gene30980:CDS |
| AGATTGAGTCCTACAATGGA+GGG | 0.566288 | 3.3:+79434267 | MS.gene30980:CDS |
| CCTGTTGAAGTCAAAGCAGA+AGG | 0.570557 | 3.3:+79434592 | MS.gene30980:CDS |
| GCTGAATATGAGAGGAACAA+TGG | 0.571145 | 3.3:+79431191 | MS.gene30980:intron |
| GTAGAGGAACATTACAAAAG+TGG | 0.573234 | 3.3:-79432789 | None:intergenic |
| GGCCTTGCTACCTCATTCAA+AGG | 0.584805 | 3.3:+79433465 | MS.gene30980:CDS |
| ATCCGAGACTTGGTAGAGAA+GGG | 0.585852 | 3.3:-79433338 | None:intergenic |
| TCTTGGATAGATAAGTTGAA+AGG | 0.588178 | 3.3:-79432707 | None:intergenic |
| GCAGAAGGCACAGTTGGAGT+GGG | 0.589609 | 3.3:+79434607 | MS.gene30980:CDS |
| AACGCAGAACTGGTTTACAA+TGG | 0.591344 | 3.3:+79433795 | MS.gene30980:intron |
| GCACTTCCTATGAGAGGCAG+AGG | 0.595671 | 3.3:+79433651 | MS.gene30980:CDS |
| CAAACTACACAGATGGGCAC+TGG | 0.597035 | 3.3:+79434651 | MS.gene30980:CDS |
| AAAGAACTAGTTGGACGTGA+AGG | 0.598037 | 3.3:+79433552 | MS.gene30980:CDS |
| GAGATTGAGTCCTACAATGG+AGG | 0.602635 | 3.3:+79434266 | MS.gene30980:CDS |
| ATTTAACAGGCTCTAGTGCA+AGG | 0.604649 | 3.3:+79432837 | MS.gene30980:CDS |
| AAATAGCAAACTACACAGAT+GGG | 0.605901 | 3.3:+79434645 | MS.gene30980:CDS |
| TGAATGCAGAATTGTTGCAT+AGG | 0.609143 | 3.3:-79433835 | None:intergenic |
| AATGAGATTGAGTCCTACAA+TGG | 0.611979 | 3.3:+79434263 | MS.gene30980:CDS |
| GTGAACAGGTGGATATGGGG+TGG | 0.612033 | 3.3:+79433054 | MS.gene30980:intron |
| AAGAGATGACATGGTAACTG+TGG | 0.612180 | 3.3:-79434798 | None:intergenic |
| TGCTGCAAACAGTGTGACAT+GGG | 0.614941 | 3.3:+79433260 | MS.gene30980:CDS |
| TAAAGCAGAAAGAGATGACA+TGG | 0.615606 | 3.3:-79434807 | None:intergenic |
| ATGAGATTGAGTCTTGTACC+AGG | 0.621202 | 3.3:-79433363 | None:intergenic |
| AGAGATGACATGGTAACTGT+GGG | 0.623896 | 3.3:-79434797 | None:intergenic |
| TGGCTCAGCACCAAACAACA+TGG | 0.624342 | 3.3:-79434402 | None:intergenic |
| ATGCTGCAAACAGTGTGACA+TGG | 0.624925 | 3.3:+79433259 | MS.gene30980:CDS |
| ATATCCAGAATGGATTGATG+AGG | 0.627762 | 3.3:+79433290 | MS.gene30980:CDS |
| AAAAGCATGTTGCGGCATTG+GGG | 0.631670 | 3.3:+79434731 | MS.gene30980:CDS |
| ATCAGTGGATATCACAGAAG+CGG | 0.632224 | 3.3:+79433951 | MS.gene30980:CDS |
| CTTGTTGATGAGACAATCAG+TGG | 0.634716 | 3.3:+79433936 | MS.gene30980:CDS |
| TTTGTGAACAGGTGGATATG+GGG | 0.635856 | 3.3:+79433051 | MS.gene30980:intron |
| TGTAAATCTCTGGAGAGTAG+AGG | 0.638062 | 3.3:-79432805 | None:intergenic |
| TGAATGAAATATTTACATGG+TGG | 0.649910 | 3.3:+79434303 | MS.gene30980:CDS |
| CCTACAATGGAGGGGACCAA+GGG | 0.651743 | 3.3:+79434276 | MS.gene30980:CDS |
| GCTCTGTAGCTGAATATGAG+AGG | 0.662782 | 3.3:+79431183 | MS.gene30980:intron |
| GAGGAACATTACAAAAGTGG+CGG | 0.663674 | 3.3:-79432786 | None:intergenic |
| TCAAATGTAGATACTGATTG+GGG | 0.666900 | 3.3:+79433096 | MS.gene30980:CDS |
| ATGTAGCACATGCAAAGTGG+TGG | 0.666975 | 3.3:+79434528 | MS.gene30980:CDS |
| AGCACATGCAAAGTGGTGGA+AGG | 0.669357 | 3.3:+79434532 | MS.gene30980:CDS |
| GATTGAGTCCTACAATGGAG+GGG | 0.670790 | 3.3:+79434268 | MS.gene30980:CDS |
| GAAGCGGTTTGGAAGCAGCA+GGG | 0.673301 | 3.3:+79433967 | MS.gene30980:CDS |
| GCGGTTTGGAAGCAGCAGGG+TGG | 0.677572 | 3.3:+79433970 | MS.gene30980:CDS |
| GTGACTGGAAAAGCATGTTG+CGG | 0.678093 | 3.3:+79434723 | MS.gene30980:CDS |
| ACTAGAGCCTGTTAAATGGG+TGG | 0.681890 | 3.3:-79432831 | None:intergenic |
| TAATGAAGAGCACATAAATG+GGG | 0.692136 | 3.3:-79433494 | None:intergenic |
| GAACTTGCACTTCCTATGAG+AGG | 0.692338 | 3.3:+79433645 | MS.gene30980:CDS |
| TAGATGTAGAGCAACATGTG+TGG | 0.702518 | 3.3:-79433232 | None:intergenic |
| TAGTCCCTGAAGCATAACCA+TGG | 0.705595 | 3.3:-79434461 | None:intergenic |
| TCTACATTTGATATGTACCG+AGG | 0.712296 | 3.3:-79433084 | None:intergenic |
| AGTCTAGCTTCAACAGAACG+AGG | 0.720197 | 3.3:-79431222 | None:intergenic |
| GATGACATGGTAACTGTGGG+AGG | 0.721623 | 3.3:-79434794 | None:intergenic |
| GTGATGTAGCACATGCAAAG+TGG | 0.727257 | 3.3:+79434525 | MS.gene30980:CDS |
| GGAGTGGGATCGAAGCCAAG+CGG | 0.729172 | 3.3:+79434622 | MS.gene30980:CDS |
| CGTGAGAAGATAAAGCGTGA+CGG | 0.734239 | 3.3:-79430275 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAAATGAATTTCA+AGG | + | chr3.3:79433147-79433166 | MS.gene30980:CDS | 15.0% |
| !! | ATCAGTATTCAATATTAAAA+AGG | + | chr3.3:79431838-79431857 | MS.gene30980:intron | 15.0% |
| !! | ATTTGAATGAAATATTTACA+TGG | + | chr3.3:79434300-79434319 | MS.gene30980:CDS | 15.0% |
| !! | TATAATGAAAAAAATTGTGA+AGG | + | chr3.3:79430803-79430822 | MS.gene30980:intron | 15.0% |
| !! | TATTGAAAACTAAATTAAAC+TGG | - | chr3.3:79431071-79431090 | None:intergenic | 15.0% |
| !! | TCATAATTAAAAGAAAGAAA+AGG | - | chr3.3:79431304-79431323 | None:intergenic | 15.0% |
| !!! | GTTTTGTAAATTAATATAGT+TGG | - | chr3.3:79432342-79432361 | None:intergenic | 15.0% |
| !!! | TAAATTATTTGTTATGAACA+AGG | - | chr3.3:79431906-79431925 | None:intergenic | 15.0% |
| !!! | TATTTTAAACCAGATTAAAA+CGG | - | chr3.3:79430436-79430455 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTTTATATATGGA+TGG | - | chr3.3:79431736-79431755 | None:intergenic | 15.0% |
| !!! | TTTTTTACAAAACTCATTAT+TGG | - | chr3.3:79431789-79431808 | None:intergenic | 15.0% |
| !! | AAAAAAATTCACCAAACAAT+TGG | - | chr3.3:79432581-79432600 | None:intergenic | 20.0% |
| !! | AAATAAACACATATAATCAG+TGG | + | chr3.3:79432245-79432264 | MS.gene30980:intron | 20.0% |
| !! | AACTATGAAGAAGAAAATTA+AGG | - | chr3.3:79431273-79431292 | None:intergenic | 20.0% |
| !! | ATGATAATCATCATAAAATC+AGG | + | chr3.3:79431320-79431339 | MS.gene30980:intron | 20.0% |
| !! | ATTTAATGAGAAAAACATGA+TGG | - | chr3.3:79433742-79433761 | None:intergenic | 20.0% |
| !! | TAAAAAATGTATCTGGTAAA+AGG | + | chr3.3:79431802-79431821 | MS.gene30980:intron | 20.0% |
| !! | TACAATTACAATGTAATTAC+TGG | + | chr3.3:79431598-79431617 | MS.gene30980:intron | 20.0% |
| !! | TAGCAAAGTATATATATGTA+GGG | - | chr3.3:79430553-79430572 | None:intergenic | 20.0% |
| !! | TCCTAAAAATAAATGACTAT+TGG | - | chr3.3:79431394-79431413 | None:intergenic | 20.0% |
| !! | TTAGCAAAGTATATATATGT+AGG | - | chr3.3:79430554-79430573 | None:intergenic | 20.0% |
| !! | TTATATGAACCATTTATGTA+CGG | - | chr3.3:79430596-79430615 | None:intergenic | 20.0% |
| !!! | AATTAATTGATAGCATTGTT+GGG | - | chr3.3:79430869-79430888 | None:intergenic | 20.0% |
| !!! | AGTTTTGTAAAAAATGTATC+TGG | + | chr3.3:79431795-79431814 | MS.gene30980:intron | 20.0% |
| !!! | ATTTTAAACCAGATTAAAAC+GGG | - | chr3.3:79430435-79430454 | None:intergenic | 20.0% |
| !!! | GAGTTTATGTTTTTTTAGAT+TGG | + | chr3.3:79430360-79430379 | MS.gene30980:intron | 20.0% |
| !!! | TAATCTGGTTTAAAATAAAC+TGG | + | chr3.3:79430439-79430458 | MS.gene30980:intron | 20.0% |
| !!! | TCCAATAGTCATTTATTTTT+AGG | + | chr3.3:79431390-79431409 | MS.gene30980:intron | 20.0% |
| !!! | TTATGTTTTTTTAGATTGGA+GGG | + | chr3.3:79430364-79430383 | MS.gene30980:intron | 20.0% |
| !!! | TTTATGTTTTTTTAGATTGG+AGG | + | chr3.3:79430363-79430382 | MS.gene30980:intron | 20.0% |
| !!! | TTTCATTATAATTTTTTGGG+TGG | - | chr3.3:79430793-79430812 | None:intergenic | 20.0% |
| ! | AAAAAGATGCTTACAATGAA+TGG | + | chr3.3:79434033-79434052 | MS.gene30980:CDS | 25.0% |
| ! | AAAAATGAATTTCAAGGCAT+TGG | + | chr3.3:79433153-79433172 | MS.gene30980:CDS | 25.0% |
| ! | AAGTCAAGTTTCATAAATGA+TGG | + | chr3.3:79431454-79431473 | MS.gene30980:intron | 25.0% |
| ! | AATGTGTTTCATTAATAACG+AGG | + | chr3.3:79432624-79432643 | MS.gene30980:intron | 25.0% |
| ! | ACACAACACAATATGTATAA+TGG | - | chr3.3:79430993-79431012 | None:intergenic | 25.0% |
| ! | AGCAAAGTATATATATGTAG+GGG | - | chr3.3:79430552-79430571 | None:intergenic | 25.0% |
| ! | AGGAAAGAAACAAAATGAAA+TGG | - | chr3.3:79431104-79431123 | None:intergenic | 25.0% |
| ! | ATATTTCATTCAAATACCCT+TGG | - | chr3.3:79434295-79434314 | None:intergenic | 25.0% |
| ! | ATCATGAAACTTATGAAACT+GGG | + | chr3.3:79432893-79432912 | MS.gene30980:intron | 25.0% |
| ! | ATCGATGCATTTATTAAACT+TGG | + | chr3.3:79431124-79431143 | MS.gene30980:intron | 25.0% |
| ! | TATCAAATGTAGATACTGAT+TGG | + | chr3.3:79433094-79433113 | MS.gene30980:CDS | 25.0% |
| ! | TGAAGATTTATACAAGAGAA+AGG | + | chr3.3:79432652-79432671 | MS.gene30980:CDS | 25.0% |
| ! | TGAATGAAATATTTACATGG+TGG | + | chr3.3:79434303-79434322 | MS.gene30980:CDS | 25.0% |
| ! | TGTATACTTCAAATCCTATT+AGG | - | chr3.3:79432016-79432035 | None:intergenic | 25.0% |
| ! | TTAGGACTAAAATTATCACA+AGG | + | chr3.3:79431408-79431427 | MS.gene30980:intron | 25.0% |
| ! | TTATGTCCTTACATAAATGT+TGG | - | chr3.3:79432498-79432517 | None:intergenic | 25.0% |
| !! | AGGAACATAGATTTTCTATT+TGG | + | chr3.3:79434134-79434153 | MS.gene30980:CDS | 25.0% |
| !! | AGTTTAATAAATGCATCGAT+AGG | - | chr3.3:79431124-79431143 | None:intergenic | 25.0% |
| !! | ATACTTGAAGATGATTTTCT+AGG | + | chr3.3:79431041-79431060 | MS.gene30980:intron | 25.0% |
| !! | ATCAAATGTAGATACTGATT+GGG | + | chr3.3:79433095-79433114 | MS.gene30980:CDS | 25.0% |
| !! | ATTAATTGATAGCATTGTTG+GGG | - | chr3.3:79430868-79430887 | None:intergenic | 25.0% |
| !! | GAATTAATTGATAGCATTGT+TGG | - | chr3.3:79430870-79430889 | None:intergenic | 25.0% |
| !! | GGAACATAGATTTTCTATTT+GGG | + | chr3.3:79434135-79434154 | MS.gene30980:CDS | 25.0% |
| !! | TACTTGAAGATGATTTTCTA+GGG | + | chr3.3:79431042-79431061 | MS.gene30980:intron | 25.0% |
| !! | TATTTCTTGTTTACATTCGA+AGG | + | chr3.3:79432159-79432178 | MS.gene30980:intron | 25.0% |
| AAATAGCAAACTACACAGAT+GGG | + | chr3.3:79434645-79434664 | MS.gene30980:CDS | 30.0% | |
| AAATTGTGAAGGAAGTTACT+TGG | + | chr3.3:79430814-79430833 | MS.gene30980:intron | 30.0% | |
| AATGGAATTACAGCAAATTC+AGG | + | chr3.3:79434051-79434070 | MS.gene30980:CDS | 30.0% | |
| ACATAGTCTTTGTACTATAG+TGG | + | chr3.3:79430621-79430640 | MS.gene30980:intron | 30.0% | |
| AGAAAATTAAGGAACTGACA+TGG | - | chr3.3:79431262-79431281 | None:intergenic | 30.0% | |
| AGCAATAAACCGTACATAAA+TGG | + | chr3.3:79430584-79430603 | MS.gene30980:intron | 30.0% | |
| ATATGATACGGATCACAATT+GGG | - | chr3.3:79432093-79432112 | None:intergenic | 30.0% | |
| CAAAACTGTTGTAAAAGCTT+GGG | - | chr3.3:79434572-79434591 | None:intergenic | 30.0% | |
| CAAACTCCAACATTTATGTA+AGG | + | chr3.3:79432489-79432508 | MS.gene30980:intron | 30.0% | |
| CAAATGAAAACCATGTTGTT+TGG | + | chr3.3:79434392-79434411 | MS.gene30980:CDS | 30.0% | |
| CATCATGAAACTTATGAAAC+TGG | + | chr3.3:79432892-79432911 | MS.gene30980:intron | 30.0% | |
| GAGAACAAGTACTAAAATAG+TGG | - | chr3.3:79432991-79433010 | None:intergenic | 30.0% | |
| GATGATAGATAATGCAAAGT+AGG | + | chr3.3:79430764-79430783 | MS.gene30980:intron | 30.0% | |
| GCTGAAATATGAAATGGTAA+TGG | + | chr3.3:79430670-79430689 | MS.gene30980:intron | 30.0% | |
| GTATAGATAATCTTTGTGAC+TGG | + | chr3.3:79434708-79434727 | MS.gene30980:CDS | 30.0% | |
| GTATGTGTTAGATAGCTATA+AGG | - | chr3.3:79431936-79431955 | None:intergenic | 30.0% | |
| TAAGAACGTTTAATACGTTG+AGG | - | chr3.3:79431580-79431599 | None:intergenic | 30.0% | |
| TATATGATACGGATCACAAT+TGG | - | chr3.3:79432094-79432113 | None:intergenic | 30.0% | |
| TATCTGCAAATCCAATTGTT+TGG | + | chr3.3:79432567-79432586 | MS.gene30980:intron | 30.0% | |
| TCATGAAACTTATGAAACTG+GGG | + | chr3.3:79432894-79432913 | MS.gene30980:intron | 30.0% | |
| TCATTTAGAAAAGACAGGAA+GGG | - | chr3.3:79432117-79432136 | None:intergenic | 30.0% | |
| TCTCATCAACAAGTATTACT+AGG | - | chr3.3:79433929-79433948 | None:intergenic | 30.0% | |
| TCTCATTTATATGATCCATC+AGG | - | chr3.3:79434250-79434269 | None:intergenic | 30.0% | |
| TGCATCTTAAGTTTCTATCT+TGG | - | chr3.3:79432727-79432746 | None:intergenic | 30.0% | |
| TTATGTACGGTTTATTGCTT+TGG | - | chr3.3:79430583-79430602 | None:intergenic | 30.0% | |
| TTCAAGAAGTTCATATGTCT+TGG | - | chr3.3:79434338-79434357 | None:intergenic | 30.0% | |
| ! | AATCATTTTCAAACCACATG+AGG | + | chr3.3:79432052-79432071 | MS.gene30980:intron | 30.0% |
| ! | ACGTATATTTTGCATGATGT+TGG | + | chr3.3:79432445-79432464 | MS.gene30980:intron | 30.0% |
| ! | ACTTGAAGATGATTTTCTAG+GGG | + | chr3.3:79431043-79431062 | MS.gene30980:intron | 30.0% |
| ! | ATCATTTTCAAACCACATGA+GGG | + | chr3.3:79432053-79432072 | MS.gene30980:intron | 30.0% |
| ! | ATTTGGTATTGGAAAACAGT+TGG | - | chr3.3:79433520-79433539 | None:intergenic | 30.0% |
| ! | GCATTTAGACTCTTTAGAAA+AGG | - | chr3.3:79431512-79431531 | None:intergenic | 30.0% |
| ! | GGTTTAAAATAAACTGGATC+AGG | + | chr3.3:79430445-79430464 | MS.gene30980:intron | 30.0% |
| ! | GTAATGAAGAGCACATAAAT+GGG | - | chr3.3:79433498-79433517 | None:intergenic | 30.0% |
| ! | GTTCACCATATTTTCAGATT+GGG | + | chr3.3:79430501-79430520 | MS.gene30980:intron | 30.0% |
| ! | TAATGAAGAGCACATAAATG+GGG | - | chr3.3:79433497-79433516 | None:intergenic | 30.0% |
| ! | TCAAATGTAGATACTGATTG+GGG | + | chr3.3:79433096-79433115 | MS.gene30980:CDS | 30.0% |
| ! | TCTTGGATAGATAAGTTGAA+AGG | - | chr3.3:79432710-79432729 | None:intergenic | 30.0% |
| ! | TTTTCTTGTCGCAAAATTGA+TGG | + | chr3.3:79433762-79433781 | MS.gene30980:intron | 30.0% |
| !! | ATATGAAATGGTAATGGAAC+AGG | + | chr3.3:79430676-79430695 | MS.gene30980:intron | 30.0% |
| !! | GAACTTCTTGAAGCATTTTT+GGG | + | chr3.3:79434346-79434365 | MS.gene30980:CDS | 30.0% |
| !! | TGAACTTCTTGAAGCATTTT+TGG | + | chr3.3:79434345-79434364 | MS.gene30980:CDS | 30.0% |
| !!! | TAAGCATCTTTTTCAGCTTT+GGG | - | chr3.3:79434026-79434045 | None:intergenic | 30.0% |
| !!! | TTTTTTAGATTGGAGGGTTT+GGG | + | chr3.3:79430370-79430389 | MS.gene30980:intron | 30.0% |
| !!! | TTTTTTTAGATTGGAGGGTT+TGG | + | chr3.3:79430369-79430388 | MS.gene30980:intron | 30.0% |
| AAATATTTACATGGTGGCAC+AGG | + | chr3.3:79434309-79434328 | MS.gene30980:CDS | 35.0% | |
| AAGAAAGAGGAATGTGAAGA+AGG | - | chr3.3:79430901-79430920 | None:intergenic | 35.0% | |
| AAGACAAGTGACATGCATTT+AGG | + | chr3.3:79432530-79432549 | MS.gene30980:intron | 35.0% | |
| AATGAATTCAAACGCAGAAC+TGG | + | chr3.3:79433785-79433804 | MS.gene30980:intron | 35.0% | |
| AATGAGATTGAGTCCTACAA+TGG | + | chr3.3:79434263-79434282 | MS.gene30980:CDS | 35.0% | |
| ACAACACTGAGATATCTAAC+TGG | + | chr3.3:79433190-79433209 | MS.gene30980:CDS | 35.0% | |
| ACGTCAGCTGAAATATGAAA+TGG | + | chr3.3:79430664-79430683 | MS.gene30980:intron | 35.0% | |
| ACTTGTTCTCTTCTTAGCAT+AGG | + | chr3.3:79433001-79433020 | MS.gene30980:intron | 35.0% | |
| AGGTCAAATGAAAGTGGTTT+GGG | + | chr3.3:79430465-79430484 | MS.gene30980:intron | 35.0% | |
| AGTAGATGAGCAGCATTATT+AGG | + | chr3.3:79432314-79432333 | MS.gene30980:intron | 35.0% | |
| ATGCAGATTTACTCATACTC+AGG | + | chr3.3:79434114-79434133 | MS.gene30980:CDS | 35.0% | |
| CACAGATAGAAACAAGAAAG+AGG | - | chr3.3:79430914-79430933 | None:intergenic | 35.0% | |
| CATGAAACTTATGAAACTGG+GGG | + | chr3.3:79432895-79432914 | MS.gene30980:intron | 35.0% | |
| CTCTATGTGCTTCACTATTT+AGG | + | chr3.3:79434431-79434450 | MS.gene30980:CDS | 35.0% | |
| CTGAATATGAGAGGAACAAT+GGG | + | chr3.3:79431192-79431211 | MS.gene30980:CDS | 35.0% | |
| CTTGTTCTCTTCTTAGCATA+GGG | + | chr3.3:79433002-79433021 | MS.gene30980:intron | 35.0% | |
| GAAATAGCAAACTACACAGA+TGG | + | chr3.3:79434644-79434663 | MS.gene30980:CDS | 35.0% | |
| GCAAAACTGTTGTAAAAGCT+TGG | - | chr3.3:79434573-79434592 | None:intergenic | 35.0% | |
| GTAGAGGAACATTACAAAAG+TGG | - | chr3.3:79432792-79432811 | None:intergenic | 35.0% | |
| GTAGATGAGCAGCATTATTA+GGG | + | chr3.3:79432315-79432334 | MS.gene30980:intron | 35.0% | |
| GTCATTTAGAAAAGACAGGA+AGG | - | chr3.3:79432118-79432137 | None:intergenic | 35.0% | |
| GTTAAGCTACCTTGTAAGAA+TGG | + | chr3.3:79433390-79433409 | MS.gene30980:CDS | 35.0% | |
| TAAACCAGATTAAAACGGGT+CGG | - | chr3.3:79430431-79430450 | None:intergenic | 35.0% | |
| TAAAGCAGAAAGAGATGACA+TGG | - | chr3.3:79434810-79434829 | None:intergenic | 35.0% | |
| TACAATACCACCCATTTAAC+AGG | + | chr3.3:79432824-79432843 | MS.gene30980:CDS | 35.0% | |
| TAGTGAAGCACATAGAGAAT+TGG | - | chr3.3:79434428-79434447 | None:intergenic | 35.0% | |
| TCAGCTCATGTTTATGTTTG+TGG | + | chr3.3:79433855-79433874 | MS.gene30980:CDS | 35.0% | |
| TCTACATTTGATATGTACCG+AGG | - | chr3.3:79433087-79433106 | None:intergenic | 35.0% | |
| TCTCTCAAAACACTCAAGTT+TGG | - | chr3.3:79433597-79433616 | None:intergenic | 35.0% | |
| TCTTTGCAGGTAAACAGATT+TGG | - | chr3.3:79433537-79433556 | None:intergenic | 35.0% | |
| TGAATGCAGAATTGTTGCAT+AGG | - | chr3.3:79433838-79433857 | None:intergenic | 35.0% | |
| TTGTTCTCTTCTTAGCATAG+GGG | + | chr3.3:79433003-79433022 | MS.gene30980:intron | 35.0% | |
| TTTACCTGCAAAGAACTAGT+TGG | + | chr3.3:79433543-79433562 | MS.gene30980:CDS | 35.0% | |
| ! | ACTATTTAGGTTTGAAGCCA+TGG | + | chr3.3:79434444-79434463 | MS.gene30980:CDS | 35.0% |
| ! | ATCTGTGCAATTTTGTGAAC+AGG | + | chr3.3:79433040-79433059 | MS.gene30980:intron | 35.0% |
| ! | ATTTTGTGAACAGGTGGATA+TGG | + | chr3.3:79433049-79433068 | MS.gene30980:intron | 35.0% |
| ! | CAGGTAAACAGATTTGGTAT+TGG | - | chr3.3:79433531-79433550 | None:intergenic | 35.0% |
| ! | CGTGTTTGGAATCGTAAAAT+CGG | + | chr3.3:79430332-79430351 | MS.gene30980:intron | 35.0% |
| ! | CGTTGTCATTTAGAAAAGAC+AGG | - | chr3.3:79432122-79432141 | None:intergenic | 35.0% |
| ! | GGAAAACAATATACCGATTG+AGG | - | chr3.3:79430972-79430991 | None:intergenic | 35.0% |
| ! | GGTAATGAAGAGCACATAAA+TGG | - | chr3.3:79433499-79433518 | None:intergenic | 35.0% |
| ! | GGTTCACCATATTTTCAGAT+TGG | + | chr3.3:79430500-79430519 | MS.gene30980:intron | 35.0% |
| ! | TCATTTTCAAACCACATGAG+GGG | + | chr3.3:79432054-79432073 | MS.gene30980:intron | 35.0% |
| ! | TTTTGTGAACAGGTGGATAT+GGG | + | chr3.3:79433050-79433069 | MS.gene30980:intron | 35.0% |
| !! | AGATTTTCTATTTGGGATGC+CGG | + | chr3.3:79434142-79434161 | MS.gene30980:CDS | 35.0% |
| !! | ATATCCAGAATGGATTGATG+AGG | + | chr3.3:79433290-79433309 | MS.gene30980:CDS | 35.0% |
| !! | ATTACAGCAAATTCAGGTTG+TGG | + | chr3.3:79434057-79434076 | MS.gene30980:CDS | 35.0% |
| !! | TCTTTTTAACTCTGGTGTCA+TGG | + | chr3.3:79434193-79434212 | MS.gene30980:CDS | 35.0% |
| !! | TGGTTTGGGCTTTTATAGTT+TGG | + | chr3.3:79430479-79430498 | MS.gene30980:intron | 35.0% |
| !!! | AAGCATCTTTTTCAGCTTTG+GGG | - | chr3.3:79434025-79434044 | None:intergenic | 35.0% |
| !!! | GTAAGCATCTTTTTCAGCTT+TGG | - | chr3.3:79434027-79434046 | None:intergenic | 35.0% |
| !!! | TTCTTGAAGCATTTTTGGGT+TGG | + | chr3.3:79434350-79434369 | MS.gene30980:CDS | 35.0% |
| AAAGAACTAGTTGGACGTGA+AGG | + | chr3.3:79433552-79433571 | MS.gene30980:CDS | 40.0% | |
| AAATGCGAAACTCACACACA+CGG | + | chr3.3:79431526-79431545 | MS.gene30980:intron | 40.0% | |
| AAGAGATGACATGGTAACTG+TGG | - | chr3.3:79434801-79434820 | None:intergenic | 40.0% | |
| AAGTTTGGGAATGTGAGAGA+TGG | - | chr3.3:79433694-79433713 | None:intergenic | 40.0% | |
| AATACACGCATGCACCTAAT+AGG | + | chr3.3:79431999-79432018 | MS.gene30980:intron | 40.0% | |
| AGAGATGACATGGTAACTGT+GGG | - | chr3.3:79434800-79434819 | None:intergenic | 40.0% | |
| AGAGATGCTTCCAAACGAAA+TGG | - | chr3.3:79430248-79430267 | None:intergenic | 40.0% | |
| AGATTGAGTCCTACAATGGA+GGG | + | chr3.3:79434267-79434286 | MS.gene30980:CDS | 40.0% | |
| AGCTGAAATGTGCAGTTTGA+TGG | - | chr3.3:79434227-79434246 | None:intergenic | 40.0% | |
| AGGAAGCTTAGCAAGATACT+AGG | + | chr3.3:79432179-79432198 | MS.gene30980:intron | 40.0% | |
| ATCAGTGGATATCACAGAAG+CGG | + | chr3.3:79433951-79433970 | MS.gene30980:CDS | 40.0% | |
| ATGCAAACGAGTGCAAGTTT+GGG | - | chr3.3:79433708-79433727 | None:intergenic | 40.0% | |
| ATTGTTGCATAGGCTTCTCT+TGG | - | chr3.3:79433828-79433847 | None:intergenic | 40.0% | |
| CAGGTCAAATGAAAGTGGTT+TGG | + | chr3.3:79430464-79430483 | MS.gene30980:intron | 40.0% | |
| CAGTTAGCTCCATTCTTACA+AGG | - | chr3.3:79433402-79433421 | None:intergenic | 40.0% | |
| CTCATCTACTTGACTAACTG+TGG | - | chr3.3:79432304-79432323 | None:intergenic | 40.0% | |
| CTTCAAACTCGAATCGTGTT+TGG | + | chr3.3:79430318-79430337 | MS.gene30980:CDS | 40.0% | |
| CTTGTAAGAATGGAGCTAAC+TGG | + | chr3.3:79433400-79433419 | MS.gene30980:CDS | 40.0% | |
| GAAAAAGTTCAGCTTCCAGT+TGG | + | chr3.3:79433615-79433634 | MS.gene30980:CDS | 40.0% | |
| GAATGTGAAGAAGGTGATGT+AGG | - | chr3.3:79430892-79430911 | None:intergenic | 40.0% | |
| GACACCAGAGTTAAAAAGAG+TGG | - | chr3.3:79434192-79434211 | None:intergenic | 40.0% | |
| GAGATGCTTCCAAACGAAAT+GGG | - | chr3.3:79430247-79430266 | None:intergenic | 40.0% | |
| GAGGAACATTACAAAAGTGG+CGG | - | chr3.3:79432789-79432808 | None:intergenic | 40.0% | |
| GCACAAAGCATAAGAATGTC+AGG | + | chr3.3:79433891-79433910 | MS.gene30980:CDS | 40.0% | |
| GCTGAATATGAGAGGAACAA+TGG | + | chr3.3:79431191-79431210 | MS.gene30980:intron | 40.0% | |
| GCTGACCCAATCTGAAAATA+TGG | - | chr3.3:79430509-79430528 | None:intergenic | 40.0% | |
| GGGGTAATTTCCTTTGAATG+AGG | - | chr3.3:79433478-79433497 | None:intergenic | 40.0% | |
| TAAGGAACTGACATGGATGA+AGG | - | chr3.3:79431255-79431274 | None:intergenic | 40.0% | |
| TAGATGTAGAGCAACATGTG+TGG | - | chr3.3:79433235-79433254 | None:intergenic | 40.0% | |
| TCAGGGACTATGATTGTAAC+TGG | + | chr3.3:79434474-79434493 | MS.gene30980:CDS | 40.0% | |
| TCTAGTGCAAGGTATGTTTC+TGG | + | chr3.3:79432848-79432867 | MS.gene30980:intron | 40.0% | |
| TCTTCCTCATCAATCCATTC+TGG | - | chr3.3:79433297-79433316 | None:intergenic | 40.0% | |
| TGAAGCACATAGAGAATTGG+TGG | - | chr3.3:79434425-79434444 | None:intergenic | 40.0% | |
| TGATTCGAACTCGATTGCTA+TGG | + | chr3.3:79430184-79430203 | MS.gene30980:CDS | 40.0% | |
| TGCACTAGAGCCTGTTAAAT+GGG | - | chr3.3:79432837-79432856 | None:intergenic | 40.0% | |
| TGGATCAGGTCAAATGAAAG+TGG | + | chr3.3:79430459-79430478 | MS.gene30980:intron | 40.0% | |
| TGGCGGAAATGGTTATCAAT+AGG | - | chr3.3:79432772-79432791 | None:intergenic | 40.0% | |
| TGGGTGGTATTGTAAATCTC+TGG | - | chr3.3:79432818-79432837 | None:intergenic | 40.0% | |
| TTCCTTTGAATGAGGTAGCA+AGG | - | chr3.3:79433470-79433489 | None:intergenic | 40.0% | |
| TTGCACTAGAGCCTGTTAAA+TGG | - | chr3.3:79432838-79432857 | None:intergenic | 40.0% | |
| TTGGACGTGAAGGAAATGTA+TGG | + | chr3.3:79433562-79433581 | MS.gene30980:CDS | 40.0% | |
| TTTGCATGATGTTGGAGTTC+AGG | + | chr3.3:79432453-79432472 | MS.gene30980:intron | 40.0% | |
| TTTGTGAACAGGTGGATATG+GGG | + | chr3.3:79433051-79433070 | MS.gene30980:intron | 40.0% | |
| ! | AACGCAGAACTGGTTTACAA+TGG | + | chr3.3:79433795-79433814 | MS.gene30980:intron | 40.0% |
| ! | ATGAGATTGAGTCTTGTACC+AGG | - | chr3.3:79433366-79433385 | None:intergenic | 40.0% |
| ! | ATTTAACAGGCTCTAGTGCA+AGG | + | chr3.3:79432837-79432856 | MS.gene30980:CDS | 40.0% |
| ! | CATTACAAAAGTGGCGGAAA+TGG | - | chr3.3:79432783-79432802 | None:intergenic | 40.0% |
| ! | CTTGTTGATGAGACAATCAG+TGG | + | chr3.3:79433936-79433955 | MS.gene30980:CDS | 40.0% |
| ! | GACAGGAAGGGTATATGATA+CGG | - | chr3.3:79432105-79432124 | None:intergenic | 40.0% |
| ! | GCAAATTTTGTTGCGCATGT+TGG | + | chr3.3:79430933-79430952 | MS.gene30980:intron | 40.0% |
| ! | TGCAGAGATTTTGCATTGCA+TGG | + | chr3.3:79431161-79431180 | MS.gene30980:intron | 40.0% |
| ! | TGTAAATCTCTGGAGAGTAG+AGG | - | chr3.3:79432808-79432827 | None:intergenic | 40.0% |
| ! | TGTGCAATTTTGTGAACAGG+TGG | + | chr3.3:79433043-79433062 | MS.gene30980:intron | 40.0% |
| !! | ATTTCGTTTGGAAGCATCTC+TGG | + | chr3.3:79430247-79430266 | MS.gene30980:CDS | 40.0% |
| !! | CTGTTGTTTCCCATTTCGTT+TGG | + | chr3.3:79430235-79430254 | MS.gene30980:CDS | 40.0% |
| !! | GATGCCACTCTTTTTAACTC+TGG | + | chr3.3:79434185-79434204 | MS.gene30980:CDS | 40.0% |
| !! | TGTAGTTTGCTATTTCCGCT+TGG | - | chr3.3:79434640-79434659 | None:intergenic | 40.0% |
| !! | TTTCGTTTGGAAGCATCTCT+GGG | + | chr3.3:79430248-79430267 | MS.gene30980:CDS | 40.0% |
| !!! | TTTTAACTCTGGTGTCATGG+TGG | + | chr3.3:79434196-79434215 | MS.gene30980:CDS | 40.0% |
| AACATACCTCTGCCTCTCAT+AGG | - | chr3.3:79433660-79433679 | None:intergenic | 45.0% | |
| ACTAGAGCCTGTTAAATGGG+TGG | - | chr3.3:79432834-79432853 | None:intergenic | 45.0% | |
| ATGCTGCAAACAGTGTGACA+TGG | + | chr3.3:79433259-79433278 | MS.gene30980:CDS | 45.0% | |
| ATGTAGCACATGCAAAGTGG+TGG | + | chr3.3:79434528-79434547 | MS.gene30980:CDS | 45.0% | |
| CATGCAAACGAGTGCAAGTT+TGG | - | chr3.3:79433709-79433728 | None:intergenic | 45.0% | |
| CCTGTTGAAGTCAAAGCAGA+AGG | + | chr3.3:79434592-79434611 | MS.gene30980:CDS | 45.0% | |
| CGATTGCTATGGTTCAGCTT+AGG | + | chr3.3:79430195-79430214 | MS.gene30980:CDS | 45.0% | |
| CGTGAGAAGATAAAGCGTGA+CGG | - | chr3.3:79430278-79430297 | None:intergenic | 45.0% | |
| GAACTTGCACTTCCTATGAG+AGG | + | chr3.3:79433645-79433664 | MS.gene30980:CDS | 45.0% | |
| GAAGCCATGGTTATGCTTCA+GGG | + | chr3.3:79434457-79434476 | MS.gene30980:CDS | 45.0% | |
| GAGATTGAGTCCTACAATGG+AGG | + | chr3.3:79434266-79434285 | MS.gene30980:CDS | 45.0% | |
| GATTGAGTCCTACAATGGAG+GGG | + | chr3.3:79434268-79434287 | MS.gene30980:CDS | 45.0% | |
| GCAAGTTCACATGATCCAAC+TGG | - | chr3.3:79433633-79433652 | None:intergenic | 45.0% | |
| GCTCTGTAGCTGAATATGAG+AGG | + | chr3.3:79431183-79431202 | MS.gene30980:intron | 45.0% | |
| GGGACTATCTGTGAGAAAAC+AGG | + | chr3.3:79432915-79432934 | MS.gene30980:intron | 45.0% | |
| GGGAGTCTCTATATCCAGAA+TGG | + | chr3.3:79433280-79433299 | MS.gene30980:CDS | 45.0% | |
| GGGTCGGTTACCCATTAATA+CGG | - | chr3.3:79430415-79430434 | None:intergenic | 45.0% | |
| GGTAACCGACCCGTATTAAT+GGG | + | chr3.3:79430402-79430421 | MS.gene30980:intron | 45.0% | |
| GGTCGGTTACCCATTAATAC+GGG | - | chr3.3:79430414-79430433 | None:intergenic | 45.0% | |
| GGTTACCCATTAATACGGGT+CGG | - | chr3.3:79430410-79430429 | None:intergenic | 45.0% | |
| GTGATGTAGCACATGCAAAG+TGG | + | chr3.3:79434525-79434544 | MS.gene30980:CDS | 45.0% | |
| TAGTCCCTGAAGCATAACCA+TGG | - | chr3.3:79434464-79434483 | None:intergenic | 45.0% | |
| TATGCTTTGTGCTGCAGCTA+TGG | - | chr3.3:79433883-79433902 | None:intergenic | 45.0% | |
| TCACAATTGGGACTGTATGC+AGG | - | chr3.3:79432081-79432100 | None:intergenic | 45.0% | |
| TGAAGCCATGGTTATGCTTC+AGG | + | chr3.3:79434456-79434475 | MS.gene30980:CDS | 45.0% | |
| TGCTGCAAACAGTGTGACAT+GGG | + | chr3.3:79433260-79433279 | MS.gene30980:CDS | 45.0% | |
| TGGAGGGTTTGGGTAGTAAA+CGG | + | chr3.3:79430380-79430399 | MS.gene30980:intron | 45.0% | |
| TGGATATCACAGAAGCGGTT+TGG | + | chr3.3:79433956-79433975 | MS.gene30980:CDS | 45.0% | |
| ! | AAAAGCATGTTGCGGCATTG+GGG | + | chr3.3:79434731-79434750 | MS.gene30980:CDS | 45.0% |
| ! | ACGTCCAACTAGTTCTTTGC+AGG | - | chr3.3:79433550-79433569 | None:intergenic | 45.0% |
| ! | AGTCTAGCTTCAACAGAACG+AGG | - | chr3.3:79431225-79431244 | None:intergenic | 45.0% |
| ! | ATCCGAGACTTGGTAGAGAA+GGG | - | chr3.3:79433341-79433360 | None:intergenic | 45.0% |
| ! | CCTTCTGCTTTGACTTCAAC+AGG | - | chr3.3:79434595-79434614 | None:intergenic | 45.0% |
| ! | GAAAAGCATGTTGCGGCATT+GGG | + | chr3.3:79434730-79434749 | MS.gene30980:CDS | 45.0% |
| ! | GCACTGGCGAATCAAAGTTA+AGG | + | chr3.3:79434667-79434686 | MS.gene30980:CDS | 45.0% |
| ! | GTGACTGGAAAAGCATGTTG+CGG | + | chr3.3:79434723-79434742 | MS.gene30980:CDS | 45.0% |
| ! | TATACCGATTGAGGTGTACG+TGG | - | chr3.3:79430963-79430982 | None:intergenic | 45.0% |
| !! | GTAACCGACCCGTTTTAATC+TGG | + | chr3.3:79430424-79430443 | MS.gene30980:intron | 45.0% |
| !!! | GCATTTTTGGGTTGGTGATG+AGG | + | chr3.3:79434358-79434377 | MS.gene30980:CDS | 45.0% |
| !!! | TTTATTTAAGTTTTTATATA+TGG | - | chr3.3:79431740-79431759 | None:intergenic | 5.0% |
| !!! | TTTTTTCATTATAATTTTTT+GGG | - | chr3.3:79430796-79430815 | None:intergenic | 5.0% |
| !!! | TTTTTTTCATTATAATTTTT+TGG | - | chr3.3:79430797-79430816 | None:intergenic | 5.0% |
| AGCACCACGTACACCTCAAT+CGG | + | chr3.3:79430956-79430975 | MS.gene30980:intron | 50.0% | |
| ATGCCGGAAATCACTGCTAC+CGG | + | chr3.3:79434158-79434177 | MS.gene30980:CDS | 50.0% | |
| CAAACTACACAGATGGGCAC+TGG | + | chr3.3:79434651-79434670 | MS.gene30980:CDS | 50.0% | |
| CTGCACATTTCAGCTCCTGA+TGG | + | chr3.3:79434232-79434251 | MS.gene30980:CDS | 50.0% | |
| CTTGGTAGAGAAGGGCAAAC+AGG | - | chr3.3:79433333-79433352 | None:intergenic | 50.0% | |
| GATGACATGGTAACTGTGGG+AGG | - | chr3.3:79434797-79434816 | None:intergenic | 50.0% | |
| GGAAACAACAGCAGCTGAAG+TGG | - | chr3.3:79430226-79430245 | None:intergenic | 50.0% | |
| GGAGGGTTTGGGTAGTAAAC+GGG | + | chr3.3:79430381-79430400 | MS.gene30980:intron | 50.0% | |
| GGCCTTGCTACCTCATTCAA+AGG | + | chr3.3:79433465-79433484 | MS.gene30980:CDS | 50.0% | |
| GGGTAACCGACCCGTATTAA+TGG | + | chr3.3:79430401-79430420 | MS.gene30980:intron | 50.0% | |
| TGCCCTTCTCTACCAAGTCT+CGG | + | chr3.3:79433336-79433355 | MS.gene30980:CDS | 50.0% | |
| TGGCTCAGCACCAAACAACA+TGG | - | chr3.3:79434405-79434424 | None:intergenic | 50.0% | |
| ! | AGCACATGCAAAGTGGTGGA+AGG | + | chr3.3:79434532-79434551 | MS.gene30980:CDS | 50.0% |
| ! | ATGGTAACTGTGGGAGGTGT+TGG | - | chr3.3:79434791-79434810 | None:intergenic | 50.0% |
| ! | GATCCGAGACTTGGTAGAGA+AGG | - | chr3.3:79433342-79433361 | None:intergenic | 50.0% |
| ! | GGAAAAGCATGTTGCGGCAT+TGG | + | chr3.3:79434729-79434748 | MS.gene30980:CDS | 50.0% |
| ! | GTAGGGGTGTGCATAGAAAC+TGG | - | chr3.3:79430536-79430555 | None:intergenic | 50.0% |
| ! | GTCAAAGCAGAAGGCACAGT+TGG | + | chr3.3:79434601-79434620 | MS.gene30980:CDS | 50.0% |
| !! | GGATGCAGACTTGATAACGC+TGG | - | chr3.3:79432283-79432302 | None:intergenic | 50.0% |
| CCTACAATGGAGGGGACCAA+GGG | + | chr3.3:79434276-79434295 | MS.gene30980:CDS | 55.0% | |
| CTACCAAGTCTCGGATCTCC+TGG | + | chr3.3:79433345-79433364 | MS.gene30980:CDS | 55.0% | |
| GCACTTCCTATGAGAGGCAG+AGG | + | chr3.3:79433651-79433670 | MS.gene30980:CDS | 55.0% | |
| GTACCAGGAGATCCGAGACT+TGG | - | chr3.3:79433351-79433370 | None:intergenic | 55.0% | |
| GTGAACAGGTGGATATGGGG+TGG | + | chr3.3:79433054-79433073 | MS.gene30980:intron | 55.0% | |
| TATGGGGTGGCTCAGATCCT+CGG | + | chr3.3:79433067-79433086 | MS.gene30980:CDS | 55.0% | |
| TCCTACAATGGAGGGGACCA+AGG | + | chr3.3:79434275-79434294 | MS.gene30980:CDS | 55.0% | |
| TGTATGCAGGTCCCCTCATG+TGG | - | chr3.3:79432068-79432087 | None:intergenic | 55.0% | |
| TTTGGAAGCAGCAGGGTGGA+AGG | + | chr3.3:79433974-79433993 | MS.gene30980:CDS | 55.0% | |
| ! | AGAAGCGGTTTGGAAGCAGC+AGG | + | chr3.3:79433966-79433985 | MS.gene30980:CDS | 55.0% |
| ! | AGCAGAAGGCACAGTTGGAG+TGG | + | chr3.3:79434606-79434625 | MS.gene30980:CDS | 55.0% |
| ! | GAAGCGGTTTGGAAGCAGCA+GGG | + | chr3.3:79433967-79433986 | MS.gene30980:CDS | 55.0% |
| ! | GCAGAAGGCACAGTTGGAGT+GGG | + | chr3.3:79434607-79434626 | MS.gene30980:CDS | 55.0% |
| ! | GGCATTGGGGAGAGAGTAAC+TGG | + | chr3.3:79434744-79434763 | MS.gene30980:CDS | 55.0% |
| CCCTTGGTCCCCTCCATTGT+AGG | - | chr3.3:79434279-79434298 | None:intergenic | 60.0% | |
| GGAGTGGGATCGAAGCCAAG+CGG | + | chr3.3:79434622-79434641 | MS.gene30980:CDS | 60.0% | |
| CACCTGCAGCTTGCAGCTGC+TGG | + | chr3.3:79433444-79433463 | MS.gene30980:CDS | 65.0% | |
| ! | GCGGTTTGGAAGCAGCAGGG+TGG | + | chr3.3:79433970-79433989 | MS.gene30980:CDS | 65.0% |
| GGCCAGCAGCTGCAAGCTGC+AGG | - | chr3.3:79433449-79433468 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79430183 | 79434832 | 79430183 | ID=MS.gene30980 |
| chr3.3 | mRNA | 79430183 | 79434832 | 79430183 | ID=MS.gene30980.t1;Parent=MS.gene30980 |
| chr3.3 | exon | 79430183 | 79430344 | 79430183 | ID=MS.gene30980.t1.exon1;Parent=MS.gene30980.t1 |
| chr3.3 | CDS | 79430183 | 79430344 | 79430183 | ID=cds.MS.gene30980.t1;Parent=MS.gene30980.t1 |
| chr3.3 | exon | 79431192 | 79431262 | 79431192 | ID=MS.gene30980.t1.exon2;Parent=MS.gene30980.t1 |
| chr3.3 | CDS | 79431192 | 79431262 | 79431192 | ID=cds.MS.gene30980.t1;Parent=MS.gene30980.t1 |
| chr3.3 | exon | 79432652 | 79432858 | 79432652 | ID=MS.gene30980.t1.exon3;Parent=MS.gene30980.t1 |
| chr3.3 | CDS | 79432652 | 79432858 | 79432652 | ID=cds.MS.gene30980.t1;Parent=MS.gene30980.t1 |
| chr3.3 | exon | 79433062 | 79433672 | 79433062 | ID=MS.gene30980.t1.exon4;Parent=MS.gene30980.t1 |
| chr3.3 | CDS | 79433062 | 79433672 | 79433062 | ID=cds.MS.gene30980.t1;Parent=MS.gene30980.t1 |
| chr3.3 | exon | 79433802 | 79434832 | 79433802 | ID=MS.gene30980.t1.exon5;Parent=MS.gene30980.t1 |
| chr3.3 | CDS | 79433802 | 79434832 | 79433802 | ID=cds.MS.gene30980.t1;Parent=MS.gene30980.t1 |
| Gene Sequence |
| Protein sequence |
