Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31180.t1 | AES67570.2 | 98.1 | 910 | 17 | 0 | 1 | 910 | 62 | 971 | 0.00E+00 | 1724.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31180.t1 | F4JI44 | 42.7 | 935 | 457 | 23 | 17 | 904 | 9 | 911 | 2.0e-169 | 597.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31180.t1 | G7IHK7 | 98.1 | 910 | 17 | 0 | 1 | 910 | 62 | 971 | 0.0e+00 | 1724.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene31180 | 0.81113 | 8.17E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene31180 | 0.825599 | 4.29E-54 | -1.69E-46 |
| MS.gene050119 | MS.gene31180 | 0.809577 | 1.77E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene31180 | 0.834544 | 2.82E-56 | -1.69E-46 |
| MS.gene052611 | MS.gene31180 | 0.832683 | 8.22E-56 | -1.69E-46 |
| MS.gene052612 | MS.gene31180 | 0.837004 | 6.71E-57 | -1.69E-46 |
| MS.gene053998 | MS.gene31180 | 0.813281 | 2.77E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene31180 | 0.810273 | 1.25E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene31180 | 0.808858 | 2.52E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene31180 | 0.809873 | 1.53E-50 | -1.69E-46 |
| MS.gene060470 | MS.gene31180 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene060568 | MS.gene31180 | 0.816019 | 6.86E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTGCAGCATTGCTTGA+TGG | 0.202076 | 2.4:+6951530 | None:intergenic |
| GCTTGTTCTTTACCGGTTAA+AGG | 0.208971 | 2.4:+6945246 | None:intergenic |
| GTCTAAATCTGTTGCATTAG+AGG | 0.217184 | 2.4:-6947770 | MS.gene31180:intron |
| TGCAATTTATATCTGTTAAC+AGG | 0.220547 | 2.4:-6950239 | MS.gene31180:CDS |
| TCCTCCACATTTAAGAAGTT+TGG | 0.238064 | 2.4:+6946387 | None:intergenic |
| GAATTACAGCAGCTATTTCT+AGG | 0.247178 | 2.4:-6947996 | MS.gene31180:CDS |
| GGAGCAACTTCTTAGGAATA+AGG | 0.247722 | 2.4:-6948710 | MS.gene31180:intron |
| ATATTCATGGATGCAGCTTT+TGG | 0.261565 | 2.4:-6948901 | MS.gene31180:CDS |
| CTATTTACATCAAATGGATT+TGG | 0.266168 | 2.4:-6945609 | MS.gene31180:CDS |
| TGTGAAGGATGCCACAAATT+TGG | 0.284599 | 2.4:-6946886 | MS.gene31180:CDS |
| GTAGAAAATAAAGGCTTATC+TGG | 0.303534 | 2.4:-6945096 | MS.gene31180:CDS |
| TGTTTAAGGAGCAACTTCTT+AGG | 0.312159 | 2.4:-6948717 | MS.gene31180:CDS |
| GCTGCATTCCGCTGCATATC+AGG | 0.315685 | 2.4:+6944802 | None:intergenic |
| TTCATGCTAACTGTTCTTGC+TGG | 0.316791 | 2.4:-6950400 | MS.gene31180:CDS |
| GCAGATGCTCAAACAAAGTT+TGG | 0.317363 | 2.4:-6943851 | MS.gene31180:CDS |
| AAGATCAGCTTGTTCTTTAC+CGG | 0.320561 | 2.4:+6945239 | None:intergenic |
| GTATTACGTTGTTCCAAGTT+TGG | 0.320577 | 2.4:+6945168 | None:intergenic |
| CAATCACTATTTACATCAAA+TGG | 0.335640 | 2.4:-6945615 | MS.gene31180:CDS |
| CAACATCAATGAGGGTTATC+AGG | 0.342740 | 2.4:-6945400 | MS.gene31180:intron |
| TATTTACATCAAATGGATTT+GGG | 0.345795 | 2.4:-6945608 | MS.gene31180:CDS |
| GTAATTCTATTCGATGTATA+TGG | 0.348500 | 2.4:+6948012 | None:intergenic |
| GAACATGGCCTCGTCTCTAT+TGG | 0.353213 | 2.4:+6951124 | None:intergenic |
| TAAGCATGCTACTTGGGGTT+AGG | 0.357762 | 2.4:+6946856 | None:intergenic |
| TTGCTAGCAATGGAAACTTT+AGG | 0.358896 | 2.4:+6946536 | None:intergenic |
| GACTTGTTGAAGAAAGCTTT+TGG | 0.371189 | 2.4:-6947384 | MS.gene31180:CDS |
| CAGACGCAGGATAAGTGGTT+TGG | 0.372628 | 2.4:-6943980 | MS.gene31180:CDS |
| TTGGTATCATGAGAATAGTA+TGG | 0.379852 | 2.4:-6943832 | MS.gene31180:CDS |
| TTGTGGATGTTTGTGAGCTC+AGG | 0.389391 | 2.4:-6943928 | MS.gene31180:CDS |
| GTTGACATGGAAAAGCTTGC+AGG | 0.390495 | 2.4:-6951185 | MS.gene31180:CDS |
| GATCAGTTCGTGTGGCTGTT+AGG | 0.391856 | 2.4:-6948879 | MS.gene31180:CDS |
| AAGCTTCTTTACAGCTTCTT+CGG | 0.396342 | 2.4:-6948759 | MS.gene31180:CDS |
| AGGCAGAGAGGGCCAACAAT+TGG | 0.399431 | 2.4:-6944204 | MS.gene31180:CDS |
| ATGACAGGTTGACATATTCA+TGG | 0.400530 | 2.4:-6948914 | MS.gene31180:intron |
| TCTACCTGACTTTGCCGACT+TGG | 0.404498 | 2.4:+6945114 | None:intergenic |
| ATGCAGCTTTACTTCAATCA+TGG | 0.416081 | 2.4:-6944786 | MS.gene31180:CDS |
| CAAAGTCAGGTAGAAAATAA+AGG | 0.417480 | 2.4:-6945105 | MS.gene31180:CDS |
| TTACAGGAACTATGCGGAAA+GGG | 0.417723 | 2.4:-6948081 | MS.gene31180:intron |
| CTTTACCGGTTAAAGGTAAC+GGG | 0.418778 | 2.4:+6945253 | None:intergenic |
| TTTAATCTCCAGAGCAAGAA+AGG | 0.420874 | 2.4:-6946643 | MS.gene31180:intron |
| GGTCAATATGTTGTGCTTGT+TGG | 0.424655 | 2.4:-6944040 | MS.gene31180:CDS |
| GTGTGCAAGGAGAGGAGATT+GGG | 0.431924 | 2.4:-6944018 | MS.gene31180:CDS |
| AGACGCAGGATAAGTGGTTT+GGG | 0.434307 | 2.4:-6943979 | MS.gene31180:CDS |
| CGATGACCTTGCGGACGAAA+AGG | 0.439374 | 2.4:+6946618 | None:intergenic |
| AAGCTTTAAGCATGCTACTT+GGG | 0.439799 | 2.4:+6946850 | None:intergenic |
| ATGATCCATGTTCGGTAAGA+AGG | 0.442369 | 2.4:+6951294 | None:intergenic |
| TGCTGTCAGATTTGATTCCA+TGG | 0.444581 | 2.4:+6948816 | None:intergenic |
| GACTATAATGAATGCAGAAC+AGG | 0.445578 | 2.4:-6944857 | MS.gene31180:CDS |
| AGACACCCGTTACCTTTAAC+CGG | 0.445662 | 2.4:-6945258 | MS.gene31180:CDS |
| ATCTAAACTCCTTGCTGTGC+TGG | 0.446454 | 2.4:+6947795 | None:intergenic |
| GATCTATCTAACTTACTGCC+TGG | 0.449004 | 2.4:-6946581 | MS.gene31180:CDS |
| TCGAAATTCTAAGTTTGAGC+AGG | 0.452875 | 2.4:-6951048 | MS.gene31180:intron |
| TTATCTGGTAAAACAGCATC+AGG | 0.456723 | 2.4:-6945081 | MS.gene31180:CDS |
| GGCAGAGAGGGCCAACAATT+GGG | 0.460377 | 2.4:-6944203 | MS.gene31180:CDS |
| GAAGCTTTAAGCATGCTACT+TGG | 0.461566 | 2.4:+6946849 | None:intergenic |
| TGGTCCAAGTCGGCAAAGTC+AGG | 0.463086 | 2.4:-6945118 | MS.gene31180:CDS |
| ACAAGCTGATCTTAATAAGA+AGG | 0.472088 | 2.4:-6945229 | MS.gene31180:CDS |
| GGTCATCGAGTGCTTGCAAA+TGG | 0.472556 | 2.4:-6946603 | MS.gene31180:CDS |
| CTACAAGAGTTGAATACAAA+AGG | 0.472851 | 2.4:+6950264 | None:intergenic |
| GAGCCATGGGACCCAATTGT+TGG | 0.478783 | 2.4:+6944192 | None:intergenic |
| TGGAACTTAATAAATTATTG+AGG | 0.479739 | 2.4:-6951340 | MS.gene31180:CDS |
| GAACCTACCTTCACAAACAT+TGG | 0.480607 | 2.4:+6946764 | None:intergenic |
| TAGGTTGAATTCCAAATTTG+TGG | 0.486191 | 2.4:+6946875 | None:intergenic |
| GTAAAGAAGCTTCACACTGC+TGG | 0.487048 | 2.4:+6948770 | None:intergenic |
| ATCTATCTAACTTACTGCCT+GGG | 0.489912 | 2.4:-6946580 | MS.gene31180:CDS |
| AAAACTGACGCAAGGTGCAT+TGG | 0.492961 | 2.4:+6951155 | None:intergenic |
| GGAACTTAATAAATTATTGA+GGG | 0.498528 | 2.4:-6951339 | MS.gene31180:CDS |
| GAGGTTTGATGAGCACCAAC+AGG | 0.498672 | 2.4:+6946989 | None:intergenic |
| AACCTACCTTCACAAACATT+GGG | 0.498815 | 2.4:+6946765 | None:intergenic |
| CAAATGTGAGGAGTCGTCTT+GGG | 0.501574 | 2.4:-6945439 | MS.gene31180:CDS |
| TCAGATGCCAGTTCTGCAAA+AGG | 0.502921 | 2.4:-6945009 | MS.gene31180:CDS |
| TTGTCGACATCAGCTGCTAC+TGG | 0.503377 | 2.4:+6944240 | None:intergenic |
| TAAGTGGTTTGGGAAGAACT+TGG | 0.505851 | 2.4:-6943969 | MS.gene31180:CDS |
| GTACAGCAGCTAAGGATGTT+CGG | 0.508640 | 2.4:-6944263 | MS.gene31180:CDS |
| ACAATTGCAAGCTGTTACCT+CGG | 0.512874 | 2.4:-6951363 | MS.gene31180:CDS |
| GCAAATGTGAGGAGTCGTCT+TGG | 0.513506 | 2.4:-6945440 | MS.gene31180:CDS |
| TGTTTCAGACGCAGGATAAG+TGG | 0.516162 | 2.4:-6943985 | MS.gene31180:CDS |
| CAGAAGTCACCCAATGGGAT+TGG | 0.516365 | 2.4:-6947334 | MS.gene31180:CDS |
| TCTTTACCGGTTAAAGGTAA+CGG | 0.520153 | 2.4:+6945252 | None:intergenic |
| ATAAACCTTCTTACCGAACA+TGG | 0.522239 | 2.4:-6951299 | MS.gene31180:CDS |
| AGATCGAAAATTTGAATCAT+CGG | 0.523350 | 2.4:+6947275 | None:intergenic |
| TGTGGATGTTTGTGAGCTCA+GGG | 0.526357 | 2.4:-6943927 | MS.gene31180:CDS |
| CATGGCTCACGTGTCAGTGC+AGG | 0.529073 | 2.4:-6944177 | MS.gene31180:intron |
| GGTGTGCAAGGAGAGGAGAT+TGG | 0.534010 | 2.4:-6944019 | MS.gene31180:CDS |
| CTTCAGCAATGATCCATGTT+CGG | 0.534248 | 2.4:+6951286 | None:intergenic |
| CTGTCAGCAGTGAGATGCCC+GGG | 0.534488 | 2.4:+6947354 | None:intergenic |
| GTGAGCTCAGGGTTGACAAA+GGG | 0.534791 | 2.4:-6943916 | MS.gene31180:CDS |
| GCTAGCTCGTACAGCAGCTA+AGG | 0.535622 | 2.4:-6944271 | MS.gene31180:CDS |
| GTGGTTTGGGAAGAACTTGG+AGG | 0.539187 | 2.4:-6943966 | MS.gene31180:CDS |
| AAGTCTCAGACAGGCAGAGA+GGG | 0.540452 | 2.4:-6944215 | MS.gene31180:CDS |
| AACGAGCGTCTTAAAAGAGT+TGG | 0.541199 | 2.4:-6944940 | MS.gene31180:CDS |
| ACCATCAAGCAATGCTGCAA+AGG | 0.541213 | 2.4:-6951531 | MS.gene31180:intron |
| TCTGTCAGCAGTGAGATGCC+CGG | 0.541481 | 2.4:+6947353 | None:intergenic |
| GAATTCTGCAAATCCAAACT+TGG | 0.544557 | 2.4:-6945181 | MS.gene31180:CDS |
| TGGTATCATGAGAATAGTAT+GGG | 0.545629 | 2.4:-6943831 | MS.gene31180:CDS |
| TGAACAAAGTATTAGTGTTG+CGG | 0.546428 | 2.4:-6943805 | MS.gene31180:CDS |
| GTTGTTGTTCATGTGGATAA+CGG | 0.546629 | 2.4:-6944979 | MS.gene31180:CDS |
| ACAGCTGAAGACACAATTCA+AGG | 0.547283 | 2.4:-6945144 | MS.gene31180:CDS |
| TGCACTGACACGTGAGCCAT+GGG | 0.548146 | 2.4:+6944179 | None:intergenic |
| ATATATCTGCTGCAGTTGGA+TGG | 0.548166 | 2.4:-6946932 | MS.gene31180:CDS |
| GATTCCAAACTTCTTAAATG+TGG | 0.548185 | 2.4:-6946391 | MS.gene31180:CDS |
| CTGCACTGACACGTGAGCCA+TGG | 0.548926 | 2.4:+6944178 | None:intergenic |
| TGCAGCTTTACTTCAATCAT+GGG | 0.548989 | 2.4:-6944785 | MS.gene31180:CDS |
| TCCAAACTTCTTAAATGTGG+AGG | 0.550555 | 2.4:-6946388 | MS.gene31180:CDS |
| GTTGTGCTTGTTGGTGTGCA+AGG | 0.551205 | 2.4:-6944031 | MS.gene31180:CDS |
| GGTGCTCATGACTAAAAGCT+TGG | 0.551479 | 2.4:+6950285 | None:intergenic |
| GGTTGAACAATCGAAAAGCT+AGG | 0.557080 | 2.4:-6944293 | MS.gene31180:CDS |
| ACGGAGGTTCTTGCTAGCAA+TGG | 0.559169 | 2.4:+6946526 | None:intergenic |
| TCTAAACTCAACATCAATGA+GGG | 0.560333 | 2.4:-6945408 | MS.gene31180:CDS |
| AGCTTTAAGCATGCTACTTG+GGG | 0.561124 | 2.4:+6946851 | None:intergenic |
| GGGCCAACAATTGGGTCCCA+TGG | 0.561357 | 2.4:-6944195 | MS.gene31180:CDS |
| TGAGCTGTACCAATCCCATT+GGG | 0.561694 | 2.4:+6947325 | None:intergenic |
| TTGAATTGTGTCTTCAGCTG+TGG | 0.564285 | 2.4:+6945146 | None:intergenic |
| CAAGCTGATCTTAATAAGAA+GGG | 0.568843 | 2.4:-6945228 | MS.gene31180:CDS |
| GCCAATGGCTTCTGACGAGT+AGG | 0.568888 | 2.4:+6943883 | None:intergenic |
| TGTTCTTGCTGGTTACAGAC+AGG | 0.569943 | 2.4:-6950389 | MS.gene31180:intron |
| TTGAATGTGTAACTTCAAGA+TGG | 0.571720 | 2.4:+6948035 | None:intergenic |
| TTGAGCTGTACCAATCCCAT+TGG | 0.571816 | 2.4:+6947324 | None:intergenic |
| GGTGACGCAGATGATTGAAA+TGG | 0.573198 | 2.4:-6950428 | MS.gene31180:CDS |
| TTCTAAACTCAACATCAATG+AGG | 0.573442 | 2.4:-6945409 | MS.gene31180:CDS |
| AGAGGAGATTGGGAAAGGAA+CGG | 0.574433 | 2.4:-6944008 | MS.gene31180:CDS |
| GCTGACAGAAGTCACCCAAT+GGG | 0.574768 | 2.4:-6947339 | MS.gene31180:CDS |
| TCGACAATCAAGTCTCAGAC+AGG | 0.576747 | 2.4:-6944224 | MS.gene31180:CDS |
| CCCTACTCGTCAGAAGCCAT+TGG | 0.577203 | 2.4:-6943884 | MS.gene31180:CDS |
| CAGGGTTTATTTCAACACAA+TGG | 0.579467 | 2.4:-6950220 | MS.gene31180:CDS |
| ATCTGCAAATGTTGTGCCAA+TGG | 0.582162 | 2.4:+6943868 | None:intergenic |
| AAGCTTCTTACGCACACCAT+AGG | 0.584788 | 2.4:-6946833 | MS.gene31180:CDS |
| AAAGAATGTTGTTGTTCATG+TGG | 0.585615 | 2.4:-6944986 | MS.gene31180:CDS |
| CGTGGTTGTACAGGTTGACA+TGG | 0.585989 | 2.4:-6951198 | MS.gene31180:intron |
| GCTATAATTTCACTCTCCCA+TGG | 0.586016 | 2.4:-6947023 | MS.gene31180:CDS |
| CCAATGGCTTCTGACGAGTA+GGG | 0.586626 | 2.4:+6943884 | None:intergenic |
| TGACAAATAATGATGTCCTA+TGG | 0.586755 | 2.4:+6946817 | None:intergenic |
| ACCACTCTGCCAGAAAACTC+AGG | 0.587240 | 2.4:-6945466 | MS.gene31180:intron |
| TATGATATATCTGCTGCAGT+TGG | 0.588389 | 2.4:-6946936 | MS.gene31180:CDS |
| CAAGGAGAGGAGATTGGGAA+AGG | 0.589372 | 2.4:-6944013 | MS.gene31180:CDS |
| TATATCTGCTGCAGTTGGAT+GGG | 0.590351 | 2.4:-6946931 | MS.gene31180:CDS |
| TACAGGAACTATGCGGAAAG+GGG | 0.591420 | 2.4:-6948080 | MS.gene31180:intron |
| TGCTGACAGAAGTCACCCAA+TGG | 0.593221 | 2.4:-6947340 | MS.gene31180:CDS |
| ACAGGAACTATGCGGAAAGG+GGG | 0.593620 | 2.4:-6948079 | MS.gene31180:intron |
| TGTGAGCTCAGGGTTGACAA+AGG | 0.597457 | 2.4:-6943917 | MS.gene31180:CDS |
| TCAGGGTTGACAAAGGGTTG+CGG | 0.599029 | 2.4:-6943910 | MS.gene31180:CDS |
| AAGAAGGGTGGTCAAGTCGA+AGG | 0.599091 | 2.4:-6945213 | MS.gene31180:CDS |
| AGCTGCGAAGACGTAACCTC+AGG | 0.606779 | 2.4:+6944662 | None:intergenic |
| TTTGTTCCCAATGTTTGTGA+AGG | 0.607067 | 2.4:-6946771 | MS.gene31180:intron |
| CTCTGCCAGAAAACTCAGGA+TGG | 0.608284 | 2.4:-6945462 | MS.gene31180:intron |
| CTTACAGGAACTATGCGGAA+AGG | 0.609032 | 2.4:-6948082 | MS.gene31180:intron |
| GGAATCAGCAACCTGTGTTG+TGG | 0.611809 | 2.4:-6943945 | MS.gene31180:CDS |
| ATTCCAGACTGAAGTTCTGA+CGG | 0.615013 | 2.4:-6947045 | MS.gene31180:intron |
| CGAACATGGATCATTGCTGA+AGG | 0.616319 | 2.4:-6951285 | MS.gene31180:intron |
| ATGTTCAAATACGTGTTATG+TGG | 0.619472 | 2.4:-6951107 | MS.gene31180:CDS |
| GAAGACACAATTCAAGGCAA+TGG | 0.622872 | 2.4:-6945138 | MS.gene31180:CDS |
| GCAATTTATATCTGTTAACA+GGG | 0.623045 | 2.4:-6950238 | MS.gene31180:CDS |
| GGTGTTGCTTGCTCACCCCA+AGG | 0.624043 | 2.4:-6950183 | MS.gene31180:intron |
| TTATAATGAAGATATTTCCA+TGG | 0.627888 | 2.4:-6948833 | MS.gene31180:CDS |
| CGTCCTCCTCTGTCTCTGAG+AGG | 0.628499 | 2.4:+6946970 | None:intergenic |
| TAATACTTCACTGGATGTGA+AGG | 0.628752 | 2.4:-6946901 | MS.gene31180:CDS |
| TTCAAGGCAATGGTCCAAGT+CGG | 0.629987 | 2.4:-6945128 | MS.gene31180:CDS |
| ATGAAGTAGCCAGCACAGCA+AGG | 0.630372 | 2.4:-6947804 | MS.gene31180:CDS |
| AACTCAGGATGGCAAATGTG+AGG | 0.630909 | 2.4:-6945451 | MS.gene31180:CDS |
| ATCAAACCTCTCAGAGACAG+AGG | 0.631888 | 2.4:-6946976 | MS.gene31180:CDS |
| GCAAGCACTCGATGACCTTG+CGG | 0.634512 | 2.4:+6946609 | None:intergenic |
| AGGAACGGTGTTTCAGACGC+AGG | 0.635887 | 2.4:-6943993 | MS.gene31180:CDS |
| AAATTATTGAGGGAATCAGA+AGG | 0.636604 | 2.4:-6951329 | MS.gene31180:CDS |
| CAAGTCTCAGACAGGCAGAG+AGG | 0.639822 | 2.4:-6944216 | MS.gene31180:CDS |
| CTCAAACTTAGAATTTCGAG+AGG | 0.643809 | 2.4:+6951052 | None:intergenic |
| ACATAACACGTATTTGAACA+TGG | 0.645190 | 2.4:+6951109 | None:intergenic |
| CTCACAAACATCCACAACAC+AGG | 0.646113 | 2.4:+6943934 | None:intergenic |
| CAGGAACTATGCGGAAAGGG+GGG | 0.646619 | 2.4:-6948078 | MS.gene31180:CDS |
| ACAGGTGACAATGATAGAGA+AGG | 0.648411 | 2.4:-6944839 | MS.gene31180:CDS |
| GCTTGTTGGTGTGCAAGGAG+AGG | 0.661650 | 2.4:-6944026 | MS.gene31180:CDS |
| GCTGATCTTAATAAGAAGGG+TGG | 0.661742 | 2.4:-6945225 | MS.gene31180:CDS |
| CAAAGTATTAGTGTTGCGGA+CGG | 0.672111 | 2.4:-6943801 | MS.gene31180:CDS |
| ACGATATCAAAACTGACGCA+AGG | 0.677238 | 2.4:+6951147 | None:intergenic |
| TCGAGAGGATAAATCACACA+AGG | 0.682203 | 2.4:+6951067 | None:intergenic |
| ACAATGGAGAGATATTGCAC+AGG | 0.686223 | 2.4:-6950204 | MS.gene31180:CDS |
| TAGATGAACCTGATATGCAG+CGG | 0.688783 | 2.4:-6944810 | MS.gene31180:CDS |
| TCTGGTAAAACAGCATCAGG+AGG | 0.694098 | 2.4:-6945078 | MS.gene31180:CDS |
| ATTGCAAGCTGTTACCTCGG+TGG | 0.694425 | 2.4:-6951360 | MS.gene31180:CDS |
| TCAGTATCAAAAGAAAACCC+AGG | 0.703438 | 2.4:+6946563 | None:intergenic |
| TTTCTCTTACAGGAACTATG+CGG | 0.707151 | 2.4:-6948087 | MS.gene31180:intron |
| GATATCGTCCAATAGAGACG+AGG | 0.713931 | 2.4:-6951132 | MS.gene31180:CDS |
| AAACCTCTCAGAGACAGAGG+AGG | 0.723855 | 2.4:-6946973 | MS.gene31180:CDS |
| TAATTTATTAAGTTCCACCG+AGG | 0.728116 | 2.4:+6951346 | None:intergenic |
| AAAAGATTGAGCTCGCACAG+AGG | 0.741409 | 2.4:-6944894 | MS.gene31180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 6943796 | 6951575 | 6943796 | ID=MS.gene31180 |
| chr2.4 | mRNA | 6943796 | 6951575 | 6943796 | ID=MS.gene31180.t1;Parent=MS.gene31180 |
| chr2.4 | exon | 6951532 | 6951575 | 6951532 | ID=MS.gene31180.t1.exon1;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6951532 | 6951575 | 6951532 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6951286 | 6951411 | 6951286 | ID=MS.gene31180.t1.exon2;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6951286 | 6951411 | 6951286 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6951049 | 6951207 | 6951049 | ID=MS.gene31180.t1.exon3;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6951049 | 6951207 | 6951049 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6950390 | 6950473 | 6950390 | ID=MS.gene31180.t1.exon4;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6950390 | 6950473 | 6950390 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6950184 | 6950312 | 6950184 | ID=MS.gene31180.t1.exon5;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6950184 | 6950312 | 6950184 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6948711 | 6948929 | 6948711 | ID=MS.gene31180.t1.exon6;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6948711 | 6948929 | 6948711 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6947972 | 6948097 | 6947972 | ID=MS.gene31180.t1.exon7;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6947972 | 6948097 | 6947972 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6947771 | 6947866 | 6947771 | ID=MS.gene31180.t1.exon8;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6947771 | 6947866 | 6947771 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6947257 | 6947412 | 6947257 | ID=MS.gene31180.t1.exon9;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6947257 | 6947412 | 6947257 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6946772 | 6947060 | 6946772 | ID=MS.gene31180.t1.exon10;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6946772 | 6947060 | 6946772 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6946528 | 6946653 | 6946528 | ID=MS.gene31180.t1.exon11;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6946528 | 6946653 | 6946528 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6946372 | 6946441 | 6946372 | ID=MS.gene31180.t1.exon12;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6946372 | 6946441 | 6946372 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6945593 | 6945656 | 6945593 | ID=MS.gene31180.t1.exon13;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6945593 | 6945656 | 6945593 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6945401 | 6945475 | 6945401 | ID=MS.gene31180.t1.exon14;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6945401 | 6945475 | 6945401 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6944765 | 6945298 | 6944765 | ID=MS.gene31180.t1.exon15;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6944765 | 6945298 | 6944765 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6944653 | 6944687 | 6944653 | ID=MS.gene31180.t1.exon16;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6944653 | 6944687 | 6944653 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6944178 | 6944314 | 6944178 | ID=MS.gene31180.t1.exon17;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6944178 | 6944314 | 6944178 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| chr2.4 | exon | 6943796 | 6944061 | 6943796 | ID=MS.gene31180.t1.exon18;Parent=MS.gene31180.t1 |
| chr2.4 | CDS | 6943796 | 6944061 | 6943796 | ID=cds.MS.gene31180.t1;Parent=MS.gene31180.t1 |
| Gene Sequence |
| Protein sequence |
