Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060568.t1 | XP_013458058.1 | 94.5 | 603 | 29 | 1 | 1 | 603 | 1 | 599 | 0.00E+00 | 1110.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060568.t1 | Q8GXJ1 | 64.4 | 522 | 173 | 5 | 85 | 603 | 41 | 552 | 2.0e-186 | 653.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060568.t1 | A0A072UQH9 | 94.5 | 603 | 29 | 1 | 1 | 603 | 1 | 599 | 0.0e+00 | 1110.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060568 | MS.gene27571 | 0.804765 | 1.85E-49 | -1.69E-46 |
| MS.gene060568 | MS.gene27972 | 0.803385 | 3.58E-49 | -1.69E-46 |
| MS.gene060568 | MS.gene28650 | 0.80419 | 2.43E-49 | -1.69E-46 |
| MS.gene060568 | MS.gene29377 | 0.803375 | 3.59E-49 | -1.69E-46 |
| MS.gene060568 | MS.gene30930 | 0.824593 | 7.42E-54 | -1.69E-46 |
| MS.gene060568 | MS.gene31180 | 0.816019 | 6.86E-52 | -1.69E-46 |
| MS.gene060568 | MS.gene35252 | 0.816032 | 6.81E-52 | -1.69E-46 |
| MS.gene060568 | MS.gene35253 | 0.811118 | 8.21E-51 | -1.69E-46 |
| MS.gene060568 | MS.gene35254 | 0.806696 | 7.26E-50 | -1.69E-46 |
| MS.gene060568 | MS.gene35631 | 0.803316 | 3.70E-49 | -1.69E-46 |
| MS.gene060568 | MS.gene45467 | 0.804522 | 2.07E-49 | -1.69E-46 |
| MS.gene060568 | MS.gene70648 | 0.805309 | 1.42E-49 | -1.69E-46 |
| MS.gene060568 | MS.gene72268 | 0.806246 | 9.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060573 | MS.gene060568 | PPI |
| MS.gene044567 | MS.gene060568 | PPI |
| MS.gene060568 | MS.gene038750 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060568.t1 | MTR_4g111985 | 96.352 | 603 | 18 | 2 | 1 | 603 | 1 | 599 | 0.0 | 1207 |
| MS.gene060568.t1 | MTR_4g111985 | 95.431 | 569 | 22 | 2 | 1 | 569 | 40 | 604 | 0.0 | 1043 |
| MS.gene060568.t1 | MTR_4g111985 | 95.960 | 495 | 16 | 2 | 1 | 495 | 1 | 491 | 0.0 | 986 |
| MS.gene060568.t1 | MTR_4g109500 | 41.972 | 355 | 191 | 6 | 205 | 547 | 23 | 374 | 4.55e-84 | 276 |
| MS.gene060568.t1 | MTR_4g109500 | 41.972 | 355 | 191 | 6 | 205 | 547 | 23 | 374 | 5.54e-84 | 276 |
| MS.gene060568.t1 | MTR_2g087270 | 32.544 | 338 | 218 | 6 | 222 | 552 | 50 | 384 | 1.75e-46 | 168 |
| MS.gene060568.t1 | MTR_8g093800 | 39.245 | 265 | 145 | 7 | 280 | 533 | 152 | 411 | 3.02e-46 | 169 |
| MS.gene060568.t1 | MTR_4g055080 | 28.870 | 239 | 158 | 7 | 327 | 563 | 111 | 339 | 5.07e-22 | 99.0 |
| MS.gene060568.t1 | MTR_4g055080 | 28.870 | 239 | 158 | 7 | 327 | 563 | 136 | 364 | 6.97e-22 | 99.0 |
| MS.gene060568.t1 | MTR_3g077160 | 25.723 | 311 | 213 | 8 | 222 | 520 | 45 | 349 | 4.00e-21 | 97.1 |
| MS.gene060568.t1 | MTR_3g118535 | 26.103 | 272 | 184 | 10 | 222 | 483 | 37 | 301 | 4.45e-21 | 97.4 |
| MS.gene060568.t1 | MTR_5g004640 | 24.735 | 283 | 174 | 8 | 222 | 483 | 40 | 304 | 2.25e-18 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060568.t1 | AT3G18520 | 64.751 | 522 | 171 | 5 | 85 | 603 | 41 | 552 | 0.0 | 624 |
| MS.gene060568.t1 | AT3G18520 | 66.260 | 492 | 154 | 4 | 85 | 573 | 41 | 523 | 0.0 | 599 |
| MS.gene060568.t1 | AT3G18520 | 67.216 | 485 | 147 | 4 | 85 | 566 | 41 | 516 | 0.0 | 596 |
| MS.gene060568.t1 | AT3G18520 | 68.900 | 418 | 119 | 3 | 85 | 500 | 41 | 449 | 0.0 | 526 |
| MS.gene060568.t1 | AT5G61060 | 41.361 | 382 | 205 | 8 | 181 | 547 | 6 | 383 | 1.47e-84 | 278 |
| MS.gene060568.t1 | AT5G61060 | 40.674 | 386 | 206 | 9 | 181 | 547 | 6 | 387 | 2.51e-82 | 272 |
| MS.gene060568.t1 | AT5G61070 | 39.782 | 367 | 203 | 8 | 196 | 547 | 53 | 416 | 4.96e-80 | 266 |
| MS.gene060568.t1 | AT4G33470 | 33.699 | 365 | 200 | 12 | 171 | 514 | 46 | 389 | 1.95e-48 | 175 |
| MS.gene060568.t1 | AT1G08460 | 33.333 | 312 | 195 | 7 | 222 | 525 | 39 | 345 | 2.09e-40 | 151 |
| MS.gene060568.t1 | AT1G08460 | 35.000 | 240 | 150 | 5 | 222 | 457 | 39 | 276 | 5.80e-33 | 129 |
| MS.gene060568.t1 | AT4G38130 | 27.301 | 326 | 190 | 11 | 222 | 521 | 36 | 340 | 5.79e-21 | 96.7 |
| MS.gene060568.t1 | AT4G38130 | 27.301 | 326 | 190 | 11 | 222 | 521 | 36 | 340 | 1.06e-20 | 96.3 |
| MS.gene060568.t1 | AT5G63110 | 28.421 | 190 | 131 | 4 | 327 | 516 | 152 | 336 | 6.32e-20 | 93.6 |
| MS.gene060568.t1 | AT3G44680 | 29.146 | 199 | 133 | 5 | 327 | 525 | 136 | 326 | 2.64e-19 | 91.3 |
| MS.gene060568.t1 | AT4G09784 | 70.833 | 48 | 14 | 0 | 214 | 261 | 4 | 51 | 1.54e-15 | 72.0 |
Find 142 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCATCGGCAGTTATTTC+TGG | 0.083665 | 8.4:+15898419 | MS.gene060568:CDS |
| CGAAGTCGATCTGGCCTTTC+GGG | 0.116839 | 8.4:-15897333 | None:intergenic |
| CACATGTTGAATGCCCTTTC+TGG | 0.190069 | 8.4:+15901790 | MS.gene060568:CDS |
| GCATTGGCGGCCCAGGCTGC+AGG | 0.240046 | 8.4:+15898635 | MS.gene060568:CDS |
| ATCAAATCCTGCTGATATTA+TGG | 0.261921 | 8.4:-15901441 | None:intergenic |
| CCTTCCTAGCCCCTGCAGCC+TGG | 0.280478 | 8.4:-15898646 | None:intergenic |
| GAGAAGACGCTTACAGCATT+AGG | 0.302611 | 8.4:-15894768 | None:intergenic |
| TCGAAGTCGATCTGGCCTTT+CGG | 0.303861 | 8.4:-15897334 | None:intergenic |
| GAGAAGATACATACGGAATT+AGG | 0.318167 | 8.4:-15894452 | None:intergenic |
| TCTATTGGAACAGGTATTAC+TGG | 0.322073 | 8.4:+15902190 | MS.gene060568:intron |
| ATACTTGGCTGGATCTCATC+TGG | 0.334911 | 8.4:-15895435 | None:intergenic |
| AATAGTTTCCCTACCAAATC+TGG | 0.341902 | 8.4:+15902239 | MS.gene060568:CDS |
| CGGCCCAGGCTGCAGGGGCT+AGG | 0.342497 | 8.4:+15898642 | MS.gene060568:CDS |
| CTTCCTAGCCCCTGCAGCCT+GGG | 0.369957 | 8.4:-15898645 | None:intergenic |
| AACAGTTTGGAGGCCAGATT+TGG | 0.372142 | 8.4:-15902252 | None:intergenic |
| CAGCATGTTGTACTTCCTAT+AGG | 0.374163 | 8.4:+15900641 | MS.gene060568:CDS |
| GGCAACAGACATCATTGTTT+AGG | 0.376916 | 8.4:-15895171 | None:intergenic |
| ACAACTCTTGGCTTTGATAC+AGG | 0.380517 | 8.4:-15895048 | None:intergenic |
| CATTGGCGGCCCAGGCTGCA+GGG | 0.382102 | 8.4:+15898636 | MS.gene060568:CDS |
| TTGCATCGGCAGTTATTTCT+GGG | 0.382630 | 8.4:+15898420 | MS.gene060568:CDS |
| GGAATTGAATGGCATCTTCC+TGG | 0.383668 | 8.4:-15897550 | None:intergenic |
| AGAAGACGCTTACAGCATTA+GGG | 0.385728 | 8.4:-15894767 | None:intergenic |
| ACCACATTGGTGCCAAAATT+CGG | 0.388042 | 8.4:-15902836 | None:intergenic |
| ATGATGAGGAGGACGATGAT+TGG | 0.390416 | 8.4:+15895080 | MS.gene060568:CDS |
| TGCTGCAGTGGCAGCATTGG+CGG | 0.393653 | 8.4:+15898622 | MS.gene060568:CDS |
| CGAGGACTTCGAAAACAGTT+TGG | 0.395135 | 8.4:-15902265 | None:intergenic |
| GGAATTGAAGGTTCATTCTT+CGG | 0.409641 | 8.4:+15898052 | MS.gene060568:intron |
| GCAAACAGTTCTACGGCAAT+TGG | 0.410293 | 8.4:+15896376 | MS.gene060568:CDS |
| TGTGCTGCTAGGTTGGCAGC+TGG | 0.415728 | 8.4:+15898383 | MS.gene060568:CDS |
| AAAATGCTTGTTATTCTTGA+GGG | 0.421420 | 8.4:+15901817 | MS.gene060568:CDS |
| GCTGATATTATGGTAAAATC+TGG | 0.422974 | 8.4:-15901431 | None:intergenic |
| TTTCGTTGCAGAAAAGGGTC+AGG | 0.423360 | 8.4:+15894565 | MS.gene060568:intron |
| TGAGAGTCCTGTACCTGAAC+TGG | 0.426221 | 8.4:+15902214 | MS.gene060568:CDS |
| CCAGGCTGCAGGGGCTAGGA+AGG | 0.432471 | 8.4:+15898646 | MS.gene060568:CDS |
| AGTCACATAGGTATATTTCC+AGG | 0.433775 | 8.4:+15897532 | MS.gene060568:intron |
| ATGATGATGAGGACGATGAT+TGG | 0.435547 | 8.4:+15894652 | MS.gene060568:CDS |
| AGTGGCAGCATTGGCGGCCC+AGG | 0.435884 | 8.4:+15898628 | MS.gene060568:CDS |
| GAAGATGGCCGTTCAGCATA+TGG | 0.436986 | 8.4:-15902887 | None:intergenic |
| TTGACTGCAGAAAAGGGTTA+AGG | 0.438290 | 8.4:+15895000 | MS.gene060568:intron |
| AAACCAAGACTTGTTTGATC+AGG | 0.441472 | 8.4:+15894623 | MS.gene060568:CDS |
| CATCCTCGTCAAACAACTCT+TGG | 0.444113 | 8.4:-15895060 | None:intergenic |
| ACAGCATTAGGGAGTGGATT+GGG | 0.444372 | 8.4:-15894756 | None:intergenic |
| CAGGATGTTCATCACGGAAA+TGG | 0.445304 | 8.4:+15898799 | MS.gene060568:intron |
| CTTTGGGAAATGCAATGTCT+TGG | 0.447271 | 8.4:+15902344 | MS.gene060568:CDS |
| ATGCAAAATGCCCACGGCTC+AGG | 0.448661 | 8.4:-15895389 | None:intergenic |
| TTTGGGAAATGCAATGTCTT+GGG | 0.449185 | 8.4:+15902345 | MS.gene060568:CDS |
| CGATCTGGCCTTTCGGGGTG+TGG | 0.454064 | 8.4:-15897327 | None:intergenic |
| TGATGAGGAGGACGATGATT+GGG | 0.458989 | 8.4:+15895081 | MS.gene060568:CDS |
| GCAATTGCTCGAAGTCGATC+TGG | 0.459181 | 8.4:-15897342 | None:intergenic |
| TTCTGCAACTGCAGTGATCA+AGG | 0.465701 | 8.4:+15901955 | MS.gene060568:CDS |
| GTGCTGCTAGGTTGGCAGCT+GGG | 0.470291 | 8.4:+15898384 | MS.gene060568:CDS |
| CATCCTGATCAAACAAGTCT+TGG | 0.471025 | 8.4:-15894626 | None:intergenic |
| GGATCTTCATCTTGTGCAAA+GGG | 0.477219 | 8.4:-15895414 | None:intergenic |
| TAATGCTGCAGTGGCAGCAT+TGG | 0.477717 | 8.4:+15898619 | MS.gene060568:CDS |
| ATCTTCTATGTACAGATATG+TGG | 0.478631 | 8.4:+15895345 | MS.gene060568:intron |
| ATTGGCGGCCCAGGCTGCAG+GGG | 0.479227 | 8.4:+15898637 | MS.gene060568:CDS |
| AGACATTTCTGCAACTGAGT+TGG | 0.481819 | 8.4:-15895106 | None:intergenic |
| CTCGTGAGCACCTCCAGTAC+CGG | 0.488935 | 8.4:-15899806 | None:intergenic |
| TTCAGCATGTGCTGCTAGGT+TGG | 0.489674 | 8.4:+15898376 | MS.gene060568:CDS |
| GGATAGATAAATACCAGCTC+TGG | 0.490158 | 8.4:-15897376 | None:intergenic |
| TAAAATCAGGTTAGACCTCC+TGG | 0.499376 | 8.4:+15898551 | MS.gene060568:intron |
| TCTTGAGTGATTTCTCTAGC+AGG | 0.501539 | 8.4:-15897571 | None:intergenic |
| TTTCTCTAGCAGGAATTGAA+TGG | 0.507359 | 8.4:-15897561 | None:intergenic |
| AGCACATGCTGAATGCTCAT+TGG | 0.509083 | 8.4:-15898366 | None:intergenic |
| TTCTTACATCGCAACCTCCA+AGG | 0.511040 | 8.4:-15901481 | None:intergenic |
| TACAGCATTAGGGAGTGGAT+TGG | 0.514017 | 8.4:-15894757 | None:intergenic |
| TGATGATGAGGACGATGATT+GGG | 0.521594 | 8.4:+15894653 | MS.gene060568:CDS |
| CTATTGGAACAGGTATTACT+GGG | 0.522551 | 8.4:+15902191 | MS.gene060568:intron |
| TCTTCTATGTACAGATATGT+GGG | 0.527426 | 8.4:+15895346 | MS.gene060568:intron |
| AATAACTGCCGATGCAAGAT+CGG | 0.527658 | 8.4:-15898414 | None:intergenic |
| TTTACACCGGCATGATGACC+AGG | 0.528140 | 8.4:-15898569 | None:intergenic |
| ATTATGCAGATTACTCCCTC+TGG | 0.530460 | 8.4:+15901751 | MS.gene060568:intron |
| TGGCACCAATGTGGTGGAGG+TGG | 0.530662 | 8.4:+15902844 | MS.gene060568:CDS |
| TCTTACATCGCAACCTCCAA+GGG | 0.531390 | 8.4:-15901480 | None:intergenic |
| TTACAAGCAAGTTAATGTCT+AGG | 0.531906 | 8.4:+15898096 | MS.gene060568:CDS |
| GAAAAGGGTTAAGGTGCTAA+AGG | 0.533959 | 8.4:+15895009 | MS.gene060568:intron |
| GCTAGAGGTGATCCCCTTGG+AGG | 0.534965 | 8.4:+15901467 | MS.gene060568:CDS |
| GCTGCTAGTCTTGCCAGAGC+TGG | 0.535153 | 8.4:+15897363 | MS.gene060568:CDS |
| CACTCAAGAAGAACTGATGA+TGG | 0.535203 | 8.4:+15897585 | MS.gene060568:CDS |
| GCTGCTAGAGGTGATCCCCT+TGG | 0.536365 | 8.4:+15901464 | MS.gene060568:CDS |
| GTTGTTTGACGAGGATGATG+AGG | 0.540216 | 8.4:+15895066 | MS.gene060568:CDS |
| TTCTTATTCCATATGCTGAA+CGG | 0.541673 | 8.4:+15902879 | MS.gene060568:CDS |
| TTAAAGATAGGTTTCAAGGA+AGG | 0.543946 | 8.4:-15902308 | None:intergenic |
| TCATCAGCTTGCTTCTGAGA+TGG | 0.545120 | 8.4:-15894678 | None:intergenic |
| TTTGGAGGCCAGATTTGGTA+GGG | 0.545315 | 8.4:-15902247 | None:intergenic |
| ACGCTTACAGCATTAGGGAG+TGG | 0.553307 | 8.4:-15894762 | None:intergenic |
| AGACCTCCTGGTCATCATGC+CGG | 0.553312 | 8.4:+15898563 | MS.gene060568:CDS |
| GGACTTCGAAAACAGTTTGG+AGG | 0.554541 | 8.4:-15902262 | None:intergenic |
| GTTGGTTATATGGGTGCAGA+AGG | 0.559442 | 8.4:+15900554 | MS.gene060568:CDS |
| GTTTGGAGGCCAGATTTGGT+AGG | 0.560072 | 8.4:-15902248 | None:intergenic |
| TGGATCTTCATCTTGTGCAA+AGG | 0.561337 | 8.4:-15895415 | None:intergenic |
| TTCGGAGCATATTGAATCTG+TGG | 0.564076 | 8.4:+15898070 | MS.gene060568:CDS |
| GTTACTGTGTGAATATTCCA+TGG | 0.566581 | 8.4:+15900576 | MS.gene060568:CDS |
| CGACTCCACCTCCACCACAT+TGG | 0.571135 | 8.4:-15902849 | None:intergenic |
| CCTTCACAATAATGCTGCAG+TGG | 0.574540 | 8.4:+15898610 | MS.gene060568:CDS |
| CCAACACCACCTCGACTCCA+TGG | 0.574845 | 8.4:-15900593 | None:intergenic |
| CCACTGCAGCATTATTGTGA+AGG | 0.576647 | 8.4:-15898610 | None:intergenic |
| TGCCGGTGTAAAAGATGTGA+TGG | 0.577642 | 8.4:+15898580 | MS.gene060568:CDS |
| ATTCTAAAATCCTGAGCCGT+GGG | 0.578392 | 8.4:+15895379 | MS.gene060568:CDS |
| TGCTTGTTATTCTTGAGGGG+GGG | 0.581434 | 8.4:+15901821 | MS.gene060568:CDS |
| ATCAGCAGCAAACAGTTCTA+CGG | 0.584811 | 8.4:+15896369 | MS.gene060568:CDS |
| TTCGTTGCAGAAAAGGGTCA+GGG | 0.586426 | 8.4:+15894566 | MS.gene060568:intron |
| CCATGGAGTCGAGGTGGTGT+TGG | 0.588677 | 8.4:+15900593 | MS.gene060568:CDS |
| ATGCTTGTTATTCTTGAGGG+GGG | 0.588693 | 8.4:+15901820 | MS.gene060568:CDS |
| AAGCAAGCTGATGATGATGA+TGG | 0.595134 | 8.4:+15894687 | MS.gene060568:CDS |
| GATTCTAAAATCCTGAGCCG+TGG | 0.595608 | 8.4:+15895378 | MS.gene060568:CDS |
| TACGGAATTAGGCGGTGGCA+TGG | 0.595758 | 8.4:-15894441 | None:intergenic |
| ATGTTGAATGCCCTTTCTGG+TGG | 0.598032 | 8.4:+15901793 | MS.gene060568:CDS |
| AATGCTTGTTATTCTTGAGG+GGG | 0.598743 | 8.4:+15901819 | MS.gene060568:CDS |
| GCCGGTGTAAAAGATGTGAT+GGG | 0.602652 | 8.4:+15898581 | MS.gene060568:CDS |
| GTTATGTGCCGATCTTGCAT+CGG | 0.611910 | 8.4:+15898406 | MS.gene060568:CDS |
| TCGTGAGCACCTCCAGTACC+GGG | 0.612589 | 8.4:-15899805 | None:intergenic |
| GCTGATGATGATGATGGAGT+TGG | 0.616107 | 8.4:+15894693 | MS.gene060568:CDS |
| ATACATACGGAATTAGGCGG+TGG | 0.617573 | 8.4:-15894446 | None:intergenic |
| CGGTACTGGAGGTGCTCACG+AGG | 0.622536 | 8.4:+15899807 | MS.gene060568:CDS |
| AATCACGTCCACACCCCGAA+AGG | 0.623126 | 8.4:+15897319 | MS.gene060568:CDS |
| AATGTCTCGAAGTCATCAAG+TGG | 0.624301 | 8.4:+15895122 | MS.gene060568:CDS |
| GAAGTCGATCTGGCCTTTCG+GGG | 0.624468 | 8.4:-15897332 | None:intergenic |
| AAATGCTTGTTATTCTTGAG+GGG | 0.625092 | 8.4:+15901818 | MS.gene060568:CDS |
| TATATCATTGCATAGACATG+AGG | 0.626961 | 8.4:+15899768 | MS.gene060568:CDS |
| GCAGGATTTGATGCTGCTAG+AGG | 0.629426 | 8.4:+15901452 | MS.gene060568:CDS |
| TCATTGCATAGACATGAGGA+TGG | 0.631549 | 8.4:+15899772 | MS.gene060568:CDS |
| GTTTGACGAGGATGATGAGG+AGG | 0.631710 | 8.4:+15895069 | MS.gene060568:CDS |
| GTCATCTGTGCATAGCCAGA+GGG | 0.635405 | 8.4:-15901766 | None:intergenic |
| TGAAACTTCATCGATGACAT+CGG | 0.641947 | 8.4:-15894730 | None:intergenic |
| AGGGAGATGCAAAATGCCCA+CGG | 0.648259 | 8.4:-15895395 | None:intergenic |
| TGATGATCTCGATGCTGCTG+AGG | 0.649185 | 8.4:+15894418 | MS.gene060568:CDS |
| ATGCTCATTGGCGTATGTGT+CGG | 0.660374 | 8.4:-15898354 | None:intergenic |
| AGCATTCAGCATGTGCTGCT+AGG | 0.661436 | 8.4:+15898372 | MS.gene060568:CDS |
| GTGAATATTCCATGGAGTCG+AGG | 0.673165 | 8.4:+15900584 | MS.gene060568:CDS |
| AAGCCAAGAGTTGTTTGACG+AGG | 0.677592 | 8.4:+15895057 | MS.gene060568:CDS |
| TCATTGCAGGATGTTCATCA+CGG | 0.680384 | 8.4:+15898793 | MS.gene060568:intron |
| ATCGATGACATCGGACACCG+AGG | 0.689241 | 8.4:-15894721 | None:intergenic |
| TCATCACGGAAATGGCACAC+AGG | 0.691950 | 8.4:+15898807 | MS.gene060568:CDS |
| AAGATACATACGGAATTAGG+CGG | 0.700502 | 8.4:-15894449 | None:intergenic |
| CTTCTATGTACAGATATGTG+GGG | 0.701865 | 8.4:+15895347 | MS.gene060568:intron |
| TGATGGAGTTGGTCAGACCT+CGG | 0.704052 | 8.4:+15894704 | MS.gene060568:CDS |
| TGTCATCTGTGCATAGCCAG+AGG | 0.715415 | 8.4:-15901767 | None:intergenic |
| ACACCGGCATGATGACCAGG+AGG | 0.734651 | 8.4:-15898566 | None:intergenic |
| CCGGTGTAAAAGATGTGATG+GGG | 0.737323 | 8.4:+15898582 | MS.gene060568:CDS |
| CTTACATCGCAACCTCCAAG+GGG | 0.737439 | 8.4:-15901479 | None:intergenic |
| AATATTCCATGGAGTCGAGG+TGG | 0.740997 | 8.4:+15900587 | MS.gene060568:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 15894395 | 15902926 | 15894395 | ID=MS.gene060568 |
| chr8.4 | mRNA | 15894395 | 15902926 | 15894395 | ID=MS.gene060568.t1;Parent=MS.gene060568 |
| chr8.4 | exon | 15894395 | 15894460 | 15894395 | ID=MS.gene060568.t1.exon1;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15894395 | 15894460 | 15894395 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15894576 | 15894776 | 15894576 | ID=MS.gene060568.t1.exon2;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15894576 | 15894776 | 15894576 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15895010 | 15895195 | 15895010 | ID=MS.gene060568.t1.exon3;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15895010 | 15895195 | 15895010 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15895360 | 15895471 | 15895360 | ID=MS.gene060568.t1.exon4;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15895360 | 15895471 | 15895360 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15896353 | 15896429 | 15896353 | ID=MS.gene060568.t1.exon5;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15896353 | 15896429 | 15896353 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15897309 | 15897384 | 15897309 | ID=MS.gene060568.t1.exon6;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15897309 | 15897384 | 15897309 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15897542 | 15897606 | 15897542 | ID=MS.gene060568.t1.exon7;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15897542 | 15897606 | 15897542 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15898062 | 15898117 | 15898062 | ID=MS.gene060568.t1.exon8;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15898062 | 15898117 | 15898062 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15898343 | 15898466 | 15898343 | ID=MS.gene060568.t1.exon9;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15898343 | 15898466 | 15898343 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15898560 | 15898685 | 15898560 | ID=MS.gene060568.t1.exon10;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15898560 | 15898685 | 15898560 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15898802 | 15898852 | 15898802 | ID=MS.gene060568.t1.exon11;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15898802 | 15898852 | 15898802 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15899760 | 15899828 | 15899760 | ID=MS.gene060568.t1.exon12;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15899760 | 15899828 | 15899760 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15900554 | 15900662 | 15900554 | ID=MS.gene060568.t1.exon13;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15900554 | 15900662 | 15900554 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15901417 | 15901496 | 15901417 | ID=MS.gene060568.t1.exon14;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15901417 | 15901496 | 15901417 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15901760 | 15901842 | 15901760 | ID=MS.gene060568.t1.exon15;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15901760 | 15901842 | 15901760 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15901931 | 15901976 | 15901931 | ID=MS.gene060568.t1.exon16;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15901931 | 15901976 | 15901931 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15902203 | 15902374 | 15902203 | ID=MS.gene060568.t1.exon17;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15902203 | 15902374 | 15902203 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| chr8.4 | exon | 15902814 | 15902926 | 15902814 | ID=MS.gene060568.t1.exon18;Parent=MS.gene060568.t1 |
| chr8.4 | CDS | 15902814 | 15902926 | 15902814 | ID=cds.MS.gene060568.t1;Parent=MS.gene060568.t1 |
| Gene Sequence |
| Protein sequence |
