AlfalfaGEDB | MS.gene31296

M. sativa cultivar XinJiangDaYe / MS.gene31296

KEGG: K09580
GO: GO:0003674 GO:0003756 GO:0003824 GO:0008150 GO:0009987 GO:0016853 GO:0016860 GO:0016864 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0140096
PFAM: PF00085.23 PF13848.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31296.t1	XP_003597231.1	95.4	565	25	1	1	565	1	564	3.60E-285	990.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31296.t1	Q9FF55	66.2	557	166	4	2	536	4	560	4.0e-216	752.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31296.t1	G7IRR6	95.4	565	25	1	1	565	1	564	2.6e-285	990.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene003513	MS.gene31296	PPI
MS.gene013275	MS.gene31296	PPI
MS.gene013810	MS.gene31296	PPI
MS.gene022334	MS.gene31296	PPI
MS.gene025228	MS.gene31296	PPI
MS.gene037185	MS.gene31296	PPI
MS.gene045060	MS.gene31296	PPI
MS.gene049245	MS.gene31296	PPI
MS.gene057716	MS.gene31296	PPI
MS.gene06356	MS.gene31296	PPI

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31296.t1	MTR_2g094180	95.596	545	23	1	21	565	21	564	0.0	1013
MS.gene31296.t1	MTR_4g059450	72.261	566	138	4	14	565	23	583	0.0	789
MS.gene31296.t1	MTR_2g101880	34.071	452	295	2	84	533	67	517	3.55e-95	300
MS.gene31296.t1	MTR_3g088220	36.009	436	257	13	81	501	35	463	1.36e-73	243
MS.gene31296.t1	MTR_3g088220	41.880	117	62	4	74	184	372	488	1.80e-16	82.8
MS.gene31296.t1	MTR_2g093500	28.329	353	213	4	175	527	199	511	1.91e-48	176
MS.gene31296.t1	MTR_1g096790	29.971	347	210	11	72	401	20	350	2.90e-25	108
MS.gene31296.t1	MTR_7g112040	41.618	173	79	6	80	232	25	195	5.07e-24	104
MS.gene31296.t1	MTR_7g112040	35.135	185	107	5	320	502	56	229	1.40e-19	90.9
MS.gene31296.t1	MTR_7g112040	44.954	109	54	4	81	184	144	251	4.63e-17	83.6

Showing 1 to 10 of 20 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31296.t1	AT5G60640	69.691	518	145	3	59	565	81	597	0.0	751
MS.gene31296.t1	AT3G54960	60.633	569	202	7	12	565	18	579	0.0	688
MS.gene31296.t1	AT5G60640	70.732	451	130	1	59	507	81	531	0.0	679
MS.gene31296.t1	AT3G54960	60.000	490	180	4	12	486	18	506	0.0	603
MS.gene31296.t1	AT5G60640	56.178	518	151	7	59	565	81	533	0.0	558
MS.gene31296.t1	AT3G16110	34.633	436	281	3	78	510	74	508	4.97e-93	295
MS.gene31296.t1	AT1G52260	32.749	513	320	8	3	510	18	510	1.14e-91	291
MS.gene31296.t1	AT1G21750	39.103	468	249	19	81	526	32	485	2.42e-84	271
MS.gene31296.t1	AT1G21750	38.745	462	252	17	81	524	32	480	1.36e-83	270
MS.gene31296.t1	AT1G77510	36.566	495	273	19	81	553	31	506	2.02e-78	256

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Find 120 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGTGTTTGAAGGAG+AGG	0.487863	2.4:+8116353	MS.gene31296:CDS
AAATGAGCATCCCAGGGCAA+AGG	0.601467	2.4:+8116973	MS.gene31296:CDS
AACACAAAATGAGCATCCCA+GGG	0.664470	2.4:+8116967	MS.gene31296:CDS
AAGCCTGTTTCAGATTACTT+CGG	0.573742	2.4:+8116152	MS.gene31296:CDS
AAGGATCAACGCAGGGCGTT+TGG	0.389545	2.4:-8115269	None:intergenic
AAGTAGCAACAGCGATGTCA+AGG	0.589607	2.4:+8117476	MS.gene31296:CDS
AATATCAGATATATGCTCCT+TGG	0.540524	2.4:+8116852	MS.gene31296:intron
AATTGTCTTGGATGAGTCAA+AGG	0.603484	2.4:+8116731	MS.gene31296:CDS
ACATCAGAGCTCTCTGATTT+AGG	0.211013	2.4:-8117423	None:intergenic
ACATGGATTAAGAAGAAGAC+TGG	0.536124	2.4:+8114304	MS.gene31296:CDS

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTTGTGTTTGAAGGAG+AGG	+	chr2.4:8116353-8116372	MS.gene31296:CDS	30.0%
AAGTTATATGCTATGAAGCA+CGG	+	chr2.4:8114556-8114575	MS.gene31296:intron	30.0%
AATATCAGATATATGCTCCT+TGG	+	chr2.4:8116852-8116871	MS.gene31296:intron	30.0%
AGAATTCGACTAAAACGAAT+CGG	-	chr2.4:8113963-8113982	None:intergenic	30.0%
ATCAAATAGCTTACACTTTC+AGG	-	chr2.4:8116597-8116616	None:intergenic	30.0%
ATCAATAAGTTATTGGATGC+AGG	-	chr2.4:8117077-8117096	None:intergenic	30.0%
ATCATACACATTCTGTAACA+TGG	-	chr2.4:8116441-8116460	None:intergenic	30.0%
CGTATCATCAAATTGAACAA+AGG	-	chr2.4:8116217-8116236	None:intergenic	30.0%
CTTGTAAAAACTGTTACCAA+AGG	-	chr2.4:8115473-8115492	None:intergenic	30.0%
GAAAGTTTAATCTTTGGACT+TGG	+	chr2.4:8114860-8114879	MS.gene31296:intron	30.0%

Showing 1 to 10 of 226 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	8113673	8117509	8113673	ID=MS.gene31296
chr2.4	mRNA	8113673	8117509	8113673	ID=MS.gene31296.t1;Parent=MS.gene31296
chr2.4	exon	8113673	8114187	8113673	ID=MS.gene31296.t1.exon1;Parent=MS.gene31296.t1
chr2.4	CDS	8113673	8114187	8113673	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8114291	8114420	8114291	ID=MS.gene31296.t1.exon2;Parent=MS.gene31296.t1
chr2.4	CDS	8114291	8114420	8114291	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8115160	8115325	8115160	ID=MS.gene31296.t1.exon3;Parent=MS.gene31296.t1
chr2.4	CDS	8115160	8115325	8115160	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8115417	8115535	8115417	ID=MS.gene31296.t1.exon4;Parent=MS.gene31296.t1
chr2.4	CDS	8115417	8115535	8115417	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8115652	8115732	8115652	ID=MS.gene31296.t1.exon5;Parent=MS.gene31296.t1
chr2.4	CDS	8115652	8115732	8115652	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8116110	8116196	8116110	ID=MS.gene31296.t1.exon6;Parent=MS.gene31296.t1
chr2.4	CDS	8116110	8116196	8116110	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8116321	8116395	8116321	ID=MS.gene31296.t1.exon7;Parent=MS.gene31296.t1
chr2.4	CDS	8116321	8116395	8116321	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8116534	8116602	8116534	ID=MS.gene31296.t1.exon8;Parent=MS.gene31296.t1
chr2.4	CDS	8116534	8116602	8116534	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8116687	8116767	8116687	ID=MS.gene31296.t1.exon9;Parent=MS.gene31296.t1
chr2.4	CDS	8116687	8116767	8116687	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8116860	8116994	8116860	ID=MS.gene31296.t1.exon10;Parent=MS.gene31296.t1
chr2.4	CDS	8116860	8116994	8116860	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8117125	8117181	8117125	ID=MS.gene31296.t1.exon11;Parent=MS.gene31296.t1
chr2.4	CDS	8117125	8117181	8117125	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1
chr2.4	exon	8117327	8117509	8117327	ID=MS.gene31296.t1.exon12;Parent=MS.gene31296.t1
chr2.4	CDS	8117327	8117509	8117327	ID=cds.MS.gene31296.t1;Parent=MS.gene31296.t1

Gene Sequence

>MS.gene31296

ATGAGAATTCTCATTCTCCTTTCCCTCACTACCCTTCTCTTCTTCTCCACCTTCTCTCCCATTCTCTCCTCAAACGAACTCGATGACGAAGATCTCAGTTTCCTCGACGAACCAGAAGCTGGTGAAACCACCACCACACACCACCACCACGGCGATGATTCCGACGCCGATCTCGAAGAAGATTTCTCCGGTTACGAAGATTCAGAAACTTACCAACCCCCTGAATTCGACGAAAAAGACGTCGTCGTTTTGAATGATACAAACTTCACTCACGTAGTCAACAAAAACCGATTCGTTTTAGTCGAATTCTACGCACCATGGTGTGGTCATTGTCAAGCATTGGCACCAGAATATGCCGCCGCTGCGACGGAATTGAAGGGTGAAAATGTCATTTTAGCTAAACTTGATGCCACTGAAGATAATGAAGTTGCTCAGAAATTTGATGTTCAGGGTTTTCCTACTATTCTTTTCTTCATTGATGGTGTTCATAAGAGTTACACTGGTCAAAGAACAAAGTAATAGTTTTCATATTTGAATTTTCCCTTTCAATTATTGAAATTTTACTCAATTTTATTGGATCTGAAAATGTGATTTTTTGTTTGTTTGATTGTGATGCAGAGAAGCTATTGTGACATGGATTAAGAAGAAGACTGGACCTGGTATTCATAACATTACTTCATTGGATGATGCTAAAACAATATTGTCTTCTGAAACCAAAGTTGTTTTGGGTTTTCTCAATTCTTTAGTTGTAAGTAATTTTTTTTATTAGTTTTGTTTCTTAAGTTAAATGTTGATTTTAAATGGTTTGTTAGATTGTTGTTTGAATATGATTAGATTAAGTTTGTTGTAGTAATAAGAAGTGTAGCTTTATTTCTTGTTTCTTAAGTTATATGCTATGAAGCACGGACACGACACTGACTCATCAACTTTGGTAATAGTTTGTGAAAATAATATAATTGAATGTAGTTAAATGTGTCTCGGTCGTGTTTCTGTGTCAGTGTCAACAGTGACACATGTTGGACATGCATTCGAACAGAAGTGTCGGTGCTACGTAGGTTATATGTTGATTTTAAGTGGTTGTTTGATTGATGTTTGCGTATGATATTCATTAGAAAACTTCCAAATACCATAGATAATCCATCTACGAATTCCAAGAATACTAACGTGTCATGGTGTTAATTAAGGAAGAAAGTTTAATCTTTGGACTTGGCGGAATTCGTGGATGGTTGCGCATACAAATTTAAACCGTCGGTGTTTTCATGGGTTGACTCTTGTGTGGCTTGAATGATTTTCCTATTCGTTATGATTTGCTAATTTTCTTGTAGTAAGATGTGTTGCTTAATTGCTTTATTTAACCATCAATTAGCAAATTTGTTTTTCGATGAAGCTGACGATTAAAGGTTTTTGTCACTGTTGATTTGATTTTATGCAGTGAATGATATTGTTGATTGTTGTATGTTACTTATCCTGTTATGCACAATATGTAGGGTCCTGAGAGTGAGGAGCTAGCTGCGGCTTCACGTCTTGAGGATGATGTCAGTTTTTACCAGACTGTGGATCCTGAAGTTGCAAAGCTTTTCAATATTGACGCTAATGCCAAACGCCCTGCGTTGATCCTTGTCAAGAAAGAAGAAGAAAAGCTCAACCATTTTGGTTTGTTTAATTTCTCATTCTTATATCTGTATTTTCTTTTTGTTTTGTTTTAACGTGCTAATTTGATGTAATGTTCACCGTGTCCCTACAGATGGAAAATTCGATAAGTCTGCAATAGTAGACTTTGTCTCCTCCAACAAGATTCCTTTGGTAACAGTTTTTACAAGAGAAAATGCTCCAACAATCTTTGAAAATCCAATCAAGAAACAGGTAATTATTTTTTAGATGTACCTTATTATAATATAATCTCATTGGCAAATTGTTATTGAAAGATGCTATCACAATGTTCTTCAAAGATTGTTACATGTTTGAAACTTTTTTTTCAGGTGTTGCTGTTTGTGACTTCAAATGATTCAGAGAAATTGCTCCCAGTATTTCAGGAAGCATCAAAGTCTTTCAAGGGAAAGGTATATTTTCATAGACGCAACTAATTATTACTTTCATCTTGTCATTTTTTGGGTCTAGACAAATTTTTATATGTCAAACAGTGCAAATAAAATAGAATTCCTTGCTTTCGACAAGAATTCAGGTGTAGTGTACTTCTTAGTGGGTCGTTATAAGTATTGAATCTGTTGACCATGCTTCAGTTTATAAAATCATGAGAATCGAGTGTATTTGACTTGTGCTGAGTAGTGATATCTGAAATATGTTCTCTCTGATTTTGCTAATTGCTACATTTTACTGATAAATAAAATTGTCATAGCATTGATCCAGCTCTTCCTCCTAAAGGGTGCTTATGTTTTTGAGAATGAATGATTTATCTGTGTGCACTTATCCATTGCAGTTGATCTTTGTGCTTGTGGAAACTGATAACGAAGATGTTGGAAAGCCTGTTTCAGATTACTTCGGTATTAGTGGGACTGCTCCAAAAGTAATTATTTCTTTTTCCCTTTGTTCAATTTGATGATACGTCATGAAATTCATAGAATTAACATATTACATCTTTTGAATAACTTGGAAGTATATTTGAGTAACCAGTTGAATTTCCAATGCAGGTACTTGCATACACCGGAAACGATGATGGAAGAAAATTTGTGTTTGAAGGAGAGGTGACTATTGACAGAATTAAGGTACTCTTTTCTCCCTTGCCTTAGACTCTGTTAGTTTTGCTACCATGTTACAGAATGTGTATGATTGCCTTTTTCTTTCATTTAATGAGGTTTGAAAGTAGTATTTTGACAAAATTTCAAATCTTCATTTTATCTCAGGCATTTGGGGAAGATTTCCTTGAAGACAAGCTAAAACCTTTTTTCAAGTCAGACCCAATTCCTGAAAGTGTAAGCTATTTGATTTGGCAGCCATCAATTATGTTTTGTTAACTTGGTGTTTCGTGTCTAACATGTTTGTTAACTCGGCGACAGAATGATGGTGATGTGAAAATAGTTGTTGGAAACAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGGTACAACTTTGACCCTCTATTTTACCAGTTATATTTGCATCTCTAATGATCTGCATCTTGTATTGTTAATTTAATGGTTGGTGGAATATCAGATATATGCTCCTTGGTGTGGCCATTGCCAACATTTGGAACCGATATACAACAAGCTTGCAAAACACCTTCGCAGTATTGACTCTCTTGTAATAGCCAAGATGGACGGAACACAAAATGAGCATCCCAGGGCAAAGGTAAACCCAAATTCAAACTAGACATTGCTAGCATATAATGATATTTGCTACAACTTATGCTAACTTTTGAATTTTCGATCCTGCATCCAATAACTTATTGATCAATCTTTGATTTATGTTCACTTTGCAGTCTGATGGATTCCCCACTCTTCTCTTCTTCCCAGCAGGAAACAAAAGTTTTGATCCTGTAAGTGAATATTAAGCAATAGTACATATTTTTATTAATTCAGCTTTGTTAAATATAAATAAGCTCCCGTGTGTGTGCGAGAGTGATCTGCATATGGTTTATCATTATGTGATTGACATTTATAATTGCTTTATTGTGTTTGCAGATTACTGTTGAGACAGATCGCACTGTTGTAGCCTTTTACAAGTTCCTCAAGCAGCATGCATCAATCCCATTCAAGCTCCAGAAACCAGCCTCAACTCCTAAATCAGAGAGCTCTGATGTCAAGGAGAGTTCTGATGCCAAAGAGAACCAAAGTAGCAACAGCGATGTCAAGGATGAGCTATGA

Protein sequence

>MS.gene31296.t1

MRILILLSLTTLLFFSTFSPILSSNELDDEDLSFLDEPEAGETTTTHHHHGDDSDADLEEDFSGYEDSETYQPPEFDEKDVVVLNDTNFTHVVNKNRFVLVEFYAPWCGHCQALAPEYAAAATELKGENVILAKLDATEDNEVAQKFDVQGFPTILFFIDGVHKSYTGQRTKEAIVTWIKKKTGPGIHNITSLDDAKTILSSETKVVLGFLNSLVGPESEELAAASRLEDDVSFYQTVDPEVAKLFNIDANAKRPALILVKKEEEKLNHFDGKFDKSAIVDFVSSNKIPLVTVFTRENAPTIFENPIKKQVLLFVTSNDSEKLLPVFQEASKSFKGKLIFVLVETDNEDVGKPVSDYFGISGTAPKVLAYTGNDDGRKFVFEGEVTIDRIKAFGEDFLEDKLKPFFKSDPIPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQHLEPIYNKLAKHLRSIDSLVIAKMDGTQNEHPRAKSDGFPTLLFFPAGNKSFDPITVETDRTVVAFYKFLKQHASIPFKLQKPASTPKSESSDVKESSDAKENQSSNSDVKDEL