AlfalfaGEDB | MS.gene045060

M. sativa cultivar XinJiangDaYe / MS.gene045060

KEGG: K09580
GO: GO:0003674 GO:0003756 GO:0003824 GO:0008150 GO:0009987 GO:0016853 GO:0016860 GO:0016864 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0140096
PFAM: PF00085.23 PF13848.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045060.t1	P29828.1	99.8	512	1	0	1	512	1	512	3.50E-295	1023.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045060.t1	P29828	99.8	512	1	0	1	512	1	512	8.3e-298	1023.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045060.t1	A0A072V0J2	97.1	513	14	1	1	512	1	513	1.1e-287	998.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene013810	MS.gene045060	PPI
MS.gene045060	MS.gene28396	PPI
MS.gene045060	MS.gene76495	PPI
MS.gene045060	MS.gene57946	PPI
MS.gene045060	MS.gene000411	PPI
MS.gene045060	MS.gene62521	PPI
MS.gene045060	MS.gene57378	PPI
MS.gene045060	MS.gene058947	PPI
MS.gene045060	MS.gene57380	PPI
MS.gene045060	MS.gene49762	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045060.t1	MTR_3g088220	97.076	513	14	1	1	512	1	513	0.0	1014
MS.gene045060.t1	MTR_2g094180	34.091	484	294	15	35	510	80	546	8.46e-68	228
MS.gene045060.t1	MTR_4g059450	33.895	475	276	16	25	483	93	545	5.40e-63	216
MS.gene045060.t1	MTR_2g101880	27.333	450	297	13	26	463	55	486	4.84e-42	157
MS.gene045060.t1	MTR_1g096790	47.458	118	56	3	24	141	19	130	3.58e-27	114
MS.gene045060.t1	MTR_1g096790	30.252	119	78	3	365	482	16	130	2.90e-11	65.9
MS.gene045060.t1	MTR_1g087520	48.544	103	52	1	379	480	149	251	9.67e-23	100
MS.gene045060.t1	MTR_1g087520	46.809	94	47	2	53	146	168	258	7.68e-20	91.7
MS.gene045060.t1	MTR_1g087520	42.991	107	58	2	38	144	34	137	1.43e-19	90.9
MS.gene045060.t1	MTR_1g087520	41.860	86	49	1	396	480	47	132	1.27e-15	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045060.t1	AT1G21750	70.625	480	137	2	11	488	8	485	0.0	696
MS.gene045060.t1	AT1G77510	68.303	489	147	3	28	512	24	508	0.0	693
MS.gene045060.t1	AT1G21750	69.979	473	138	2	11	481	8	478	0.0	679
MS.gene045060.t1	AT1G21750	37.615	109	61	4	398	502	50	155	1.45e-15	79.7
MS.gene045060.t1	AT5G60640	33.902	469	265	14	35	483	105	548	4.52e-68	229
MS.gene045060.t1	AT5G60640	34.298	449	253	13	35	466	105	528	4.78e-68	228
MS.gene045060.t1	AT5G60640	42.478	113	62	3	370	482	96	205	2.84e-19	91.3
MS.gene045060.t1	AT3G54960	29.352	494	318	13	35	512	101	579	2.62e-56	197
MS.gene045060.t1	AT3G54960	30.529	416	269	10	35	443	101	503	3.63e-54	191
MS.gene045060.t1	AT3G54960	31.897	116	72	3	369	482	91	201	2.57e-12	69.7

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Find 101 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATCACAATACGACGG+TGG	0.747587	3.2:+75162431	MS.gene045060:CDS
AAAGGTCCCCGTGAAGCTGA+AGG	0.611382	3.2:+75160115	MS.gene045060:CDS
AACAATACCTTCAGCTTCAC+GGG	0.431815	3.2:-75160122	None:intergenic
AACTTGATCAACTCCCAACT+TGG	0.471967	3.2:+75161268	MS.gene045060:CDS
AACTTGGTTGAAGGCATACA+AGG	0.511536	3.2:+75161284	MS.gene045060:CDS
AAGAACATTCAAGAATACAA+AGG	0.658966	3.2:+75160097	MS.gene045060:CDS
AAGGGAGACTCATCAGTGTC+TGG	0.415024	3.2:+75160468	MS.gene045060:CDS
AATGCCAAACACCTTCCAAA+GGG	0.555418	3.2:+75160450	MS.gene045060:CDS
ACAACAAAAGGGTGATTGCT+AGG	0.516435	3.2:-75160708	None:intergenic
ACAATACCTTCAGCTTCACG+GGG	0.710567	3.2:-75160121	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGATATTTCACATGC+AGG	-	chr3.2:75161701-75161720	None:intergenic	30.0%
AACATGATATTTCACATGCA+GGG	-	chr3.2:75161700-75161719	None:intergenic	30.0%
AGAAAAATAATTCACCTCTG+GGG	-	chr3.2:75159849-75159868	None:intergenic	30.0%
AGCATAAATTACACATGGAA+AGG	+	chr3.2:75161957-75161976	MS.gene045060:intron	30.0%
AGTTGATCAAGTTCCAAATT+GGG	-	chr3.2:75161261-75161280	None:intergenic	30.0%
GAAAAGAACAAGGATAAAAC+TGG	+	chr3.2:75162485-75162504	MS.gene045060:CDS	30.0%
GCTTATTTCGTGTTAGATAT+TGG	+	chr3.2:75159372-75159391	MS.gene045060:intron	30.0%
TAAAACTCTATCAAAACTGC+AGG	-	chr3.2:75162122-75162141	None:intergenic	30.0%
TAAAATTGTTTCATGCTCGT+AGG	+	chr3.2:75160611-75160630	MS.gene045060:intron	30.0%
TAAGATTAAACTACAATGGC+TGG	-	chr3.2:75160249-75160268	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	75159078	75162583	75159078	ID=MS.gene045060
chr3.2	mRNA	75159078	75162583	75159078	ID=MS.gene045060.t1;Parent=MS.gene045060
chr3.2	exon	75159078	75159259	75159078	ID=MS.gene045060.t1.exon1;Parent=MS.gene045060.t1
chr3.2	CDS	75159078	75159259	75159078	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75159823	75159853	75159823	ID=MS.gene045060.t1.exon2;Parent=MS.gene045060.t1
chr3.2	CDS	75159823	75159853	75159823	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75159950	75160237	75159950	ID=MS.gene045060.t1.exon3;Parent=MS.gene045060.t1
chr3.2	CDS	75159950	75160237	75159950	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75160354	75160542	75160354	ID=MS.gene045060.t1.exon4;Parent=MS.gene045060.t1
chr3.2	CDS	75160354	75160542	75160354	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75160633	75160758	75160633	ID=MS.gene045060.t1.exon5;Parent=MS.gene045060.t1
chr3.2	CDS	75160633	75160758	75160633	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75160953	75161090	75160953	ID=MS.gene045060.t1.exon6;Parent=MS.gene045060.t1
chr3.2	CDS	75160953	75161090	75160953	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75161186	75161305	75161186	ID=MS.gene045060.t1.exon7;Parent=MS.gene045060.t1
chr3.2	CDS	75161186	75161305	75161186	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75161473	75161590	75161473	ID=MS.gene045060.t1.exon8;Parent=MS.gene045060.t1
chr3.2	CDS	75161473	75161590	75161473	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75162126	75162238	75162126	ID=MS.gene045060.t1.exon9;Parent=MS.gene045060.t1
chr3.2	CDS	75162126	75162238	75162126	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1
chr3.2	exon	75162350	75162583	75162350	ID=MS.gene045060.t1.exon10;Parent=MS.gene045060.t1
chr3.2	CDS	75162350	75162583	75162350	ID=cds.MS.gene045060.t1;Parent=MS.gene045060.t1

Gene Sequence

>MS.gene045060

ATGGCGAAAAACGTTGCGATTTTCGGCTTATTGTTTTCTCTTCTTGTGTTGGTTCCTTCTCAGATCTTCGCTGAGGAATCATCAACTGACGCTAAGGAATTTGTTCTTACATTGGATAACACTAATTTCCATGACACTGTTAAGAAGCACGATTTCATCGTCGTTGAATTCTACGCACCTTGGTATGGTTCGATTCTCCTATTTTTTATGTTTTTTTTTTTGTGTATGCTCGATTCATCGATTCTTGTTCTGATCTGTCTTATTTGCTTTTATTGTGTTCTAGATCTTAATTTTGCTTATTTCGTGTTAGATATTGGTAATTATGCTAAATTAGGTATAATTATTACATAGTTTTTGTTTTGTGTACTAATTTCAACGATTAGAGTTAGACTTGTTAATCTCTGTAGCACTACTCTTATGATCGATGTCGTGTCTGTGTCCGGTTTTGTCAGTGTCCGACACACGCTGACACGACTAACTCATGTGATTATGTTGAATTATGTTATTTCCTCGATGCGTGTCTATGCTTCATAGTTGAAAATATTGTCAATTTTTTTTTTGTTAGTTTTTTTTCAATTTTTTTTATTCAGATTGTATTTGTTGCATGCACGCTGATGTTTGTTAAATTTTCTGTAATGGAATGTTATTAAATCCAATTTTCATTTTGATCAATTGTTATGAATATTTTTGCATTGCATTTACCTTATAATTGTTAATTTGATTTTATTTTTTCCCATCTTTCTAGGTGTGGACACTGTAAGAAGCTAGCCCCAGAGGTGAATTATTTTTCTTTATTTTCTTTAATTATTTTGGGTTAAAAAATGAAAGAATATTATGCTGATGCTGATTTTTTGTTGTGTTTACATCTGCAGTATGAGAAGGCTGCTTCTATCTTGAGCACTCACGAGCCACCAGTTGTTTTGGCTAAAGTTGATGCCAATGAGGAGCACAACAAAGACCTCGCATCGGAAAATGATGTTAAGGGATTCCCAACCATTAAGATTTTTAGGAATGGTGGAAAGAACATTCAAGAATACAAAGGTCCCCGTGAAGCTGAAGGTATTGTTGAGTATTTGAAAAAACAAAGTGGCCCTGCATCCACAGAAATTAAATCTGCTGATGATGCGACCGCTTTTGTTGGTGACAACAAAGTTGTTATTGTAAGTATCCAGCCATTGTAGTTTAATCTTAGAATTTAATTCATATATACCGTAACATCTTTTATAATGCGATGCATGAAAATAAAACTCTTAATATTATCTTTCAATTTTTTCAGGTCGGAGTTTTCCCTAAATTTTCTGGTGAGGAGTACGATAACTTCATTGCATTAGCAGAGAAGTTGCGTTCTGACTATGACTTTGCTCACACTTTGAATGCCAAACACCTTCCAAAGGGAGACTCATCAGTGTCTGGGCCTGTGGTTAGGTTATTTAAGCCATTTGACGAGCTCTTTGTGGACTCAAAGGTATTTCTGATTTCTGCAGCTTGACTGTTCCATGTTACATATTTTAGTTTTTTTGTTTGTTTGTTGTTTAAAATTGTTTCATGCTCGTAGGATTTCAATGTAGAAGCTCTAGAGAAATTCATTGAAGAATCCAGTACCCCAATTGTGACTGTCTTCAACAATGAGCCTAGCAATCACCCTTTTGTTGTCAAATTCTTTAACTCTCCCAACGCAAAGGTAATATGCTATTTAAGTTATTTTTATGATTCGTAGTTGTTATTAATTTATAGAAGCATATTATTGATATATTTGCCTTTAGCTTACCATTTTGTGTCTCAAAGCATTTTACAAACCTTGCTTCCTTTGTCTCTGTTTTACACCCATATTATCCTGTGTCCCGTAAATCTAAATTAAAGTTATAAAATTGGCAGGCTATGTTGTTCATCAACTTTACTACCGAAGGTGCTGAATCTTTCAAAACAAAATACCATGAAGTTGCTGAGCAATACAAACAACAGGGAGTTAGCTTTCTTGTTGGAGATGTTGAGTCTAGTCAAGGTGCCTTCCAGGTTTGTATCAAATCAAAGTTTTATTATTTAAATATTTTCAAGTTATTCTTTGCTCAATATTAATATTTGACATTGTCAATGGCTTTTCTTGGCAGTATTTTGGACTGAAGGAAGAACAAGTACCTCTAATTATTATTCAGCATAATGATGGCAAGAAGTTTTTCAAACCCAATTTGGAACTTGATCAACTCCCAACTTGGTTGAAGGCATACAAGGTATTAGCTCATTTCTCTTGGTAGCTTTTTGCCTTTGACTTCTTTAAGTTGGTACCCTTATTTCTATTAGGATATTTGGTTTTGTAAACTCTTTCATTCAAGATATTTTATATTTTACTTCTATTGTTTGTCTTCAAGATTTTTAATTTATCATATTTTCTTTTCAGGATGGCAAGGTTGAACCATTTGTCAAGTCTGAACCTATTCCTGAAACTAACAACGAGCCTGTTAAAGTGGTGGTTGGGCAAACTCTTGAGGACGTTGTTTTCAAGTCTGGGAAGAATGGTATTAAAATTTTGCCTTTTATTTTTGCCTTTTTCTATGGATTATCAGATAGATTTTGGTACTCACTGTGTTCAAACAACATATCATGTTTCAAAATATTTATGTTCCCTGCATGTGAAATATCATGTTTCAAAATATTTATGTTCCCTGCATGTGAAAGAGTTTGGACAAAAATATTTGAGATGATTAGATAATGCATTCATATAAAGATTGTCAAAACTAGATTATAATTTGACAAAAATATAATGAATTTTGTTTTTAAAGCTAGAGATTTATGTACTTCTTGTCATATATGTTCTATGGAAGTTCTCCAGGAAACATGTTTCTTTGAAGCTGTTACTATTACAACCTTGTGATTATGTATATAGCATAAATTACACATGGAAAGGAACATGTCTTTCTGATTCCATTATGTTGCAGTAATTACCATACAGAAACCACTGTCTCTCATTCACAACTTGTATTAATTAGTTGTTTGCCTTATTCATTTAGAGTTACACTAATAATATACTGGCATAAACTATACAACCTGCAGTTTTGATAGAGTTTTATGCTCCTTGGTGTGGTCACTGCAAGCAGTTGGCTCCAATCTTGGATGAAGTTGCTGTCTCATTCCAAAGCGATGCTGATGTTGTTATTGCAAAACTGGTAAGATATGTGTCTTGTTTCATATCCTTTGATGATTATAACATTATCCTTTTTCTTTTATTTTTTGATATGGCTAACTTTATTCTATGCATCATTTGTGTCACTTTCCAGGATGCAACTGCCAACGATATCCCAACCGACACCTTTGATGTCCAAGGCTATCCAACCTTGTACTTCAGGTCAGCAAGTGGAAAACTATCACAATACGACGGTGGTAGGACAAAGGAAGACATCATAGAATTCATTGAAAAGAACAAGGATAAAACTGGTGCTGCTCATCAAGAAGTAGAACAACCAAAAGCTGCTGCTCAGCCAGAAGCAGAACAACCAAAAGATGAGCTTTGA

Protein sequence

>MS.gene045060.t1

MAKNVAIFGLLFSLLVLVPSQIFAEESSTDAKEFVLTLDNTNFHDTVKKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSTHEPPVVLAKVDANEEHNKDLASENDVKGFPTIKIFRNGGKNIQEYKGPREAEGIVEYLKKQSGPASTEIKSADDATAFVGDNKVVIVGVFPKFSGEEYDNFIALAEKLRSDYDFAHTLNAKHLPKGDSSVSGPVVRLFKPFDELFVDSKDFNVEALEKFIEESSTPIVTVFNNEPSNHPFVVKFFNSPNAKAMLFINFTTEGAESFKTKYHEVAEQYKQQGVSFLVGDVESSQGAFQYFGLKEEQVPLIIIQHNDGKKFFKPNLELDQLPTWLKAYKDGKVEPFVKSEPIPETNNEPVKVVVGQTLEDVVFKSGKNVLIEFYAPWCGHCKQLAPILDEVAVSFQSDADVVIAKLDATANDIPTDTFDVQGYPTLYFRSASGKLSQYDGGRTKEDIIEFIEKNKDKTGAAHQEVEQPKAAAQPEAEQPKDEL